Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303040 | XP_003597529.1 | 97.912 | 431 | 7 | 1 | 1 | 431 | 1 | 429 | 0.0 | 862 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303040 | sp|Q04088|POF21_ARATH | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.02e-150 | 435 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303040 | G7IHV8 | 97.912 | 431 | 7 | 1 | 1 | 431 | 1 | 429 | 0.0 | 862 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0303040 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0303040 | Msa1242940 | 0.800576 | 1.350629e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303040 | MtrunA17_Chr2g0329551 | 97.912 | 431 | 7 | 1 | 1 | 431 | 1 | 429 | 0.0 | 862 |
| Msa0303040 | MtrunA17_Chr3g0107491 | 45.402 | 348 | 141 | 10 | 72 | 406 | 38 | 349 | 3.26e-66 | 216 |
| Msa0303040 | MtrunA17_Chr5g0432701 | 52.549 | 255 | 68 | 9 | 72 | 320 | 51 | 258 | 8.96e-65 | 212 |
| Msa0303040 | MtrunA17_Chr3g0128781 | 43.796 | 274 | 80 | 8 | 72 | 335 | 7 | 216 | 6.07e-51 | 174 |
| Msa0303040 | MtrunA17_Chr4g0036071 | 44.318 | 264 | 88 | 8 | 109 | 323 | 213 | 466 | 3.38e-49 | 174 |
| Msa0303040 | MtrunA17_Chr6g0463571 | 42.532 | 308 | 122 | 12 | 66 | 366 | 22 | 281 | 8.73e-48 | 166 |
| Msa0303040 | MtrunA17_Chr1g0156051 | 59.712 | 139 | 53 | 2 | 176 | 313 | 343 | 479 | 2.17e-32 | 129 |
| Msa0303040 | MtrunA17_Chr2g0316551 | 37.821 | 156 | 82 | 2 | 219 | 374 | 206 | 346 | 2.13e-20 | 92.0 |
| Msa0303040 | MtrunA17_Chr2g0325131 | 45.614 | 114 | 57 | 2 | 219 | 327 | 189 | 302 | 1.48e-19 | 89.4 |
| Msa0303040 | MtrunA17_Chr4g0040891 | 46.000 | 100 | 54 | 0 | 219 | 318 | 192 | 291 | 8.30e-19 | 87.0 |
| Msa0303040 | MtrunA17_Chr1g0202051 | 36.697 | 109 | 69 | 0 | 206 | 314 | 109 | 217 | 2.65e-13 | 70.1 |
| Msa0303040 | MtrunA17_Chr8g0380611 | 27.341 | 267 | 158 | 6 | 58 | 313 | 80 | 321 | 2.66e-12 | 68.2 |
| Msa0303040 | MtrunA17_Chr2g0306581 | 63.265 | 49 | 18 | 0 | 209 | 257 | 1 | 49 | 2.93e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303040 | AT1G06070.1 | 73.810 | 336 | 69 | 6 | 19 | 352 | 21 | 339 | 3.64e-168 | 479 |
| Msa0303040 | AT2G31370.5 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 6.84e-152 | 436 |
| Msa0303040 | AT2G31370.2 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.05e-151 | 435 |
| Msa0303040 | AT2G31370.4 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.05e-151 | 435 |
| Msa0303040 | AT2G31370.1 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.05e-151 | 435 |
| Msa0303040 | AT2G31370.7 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.05e-151 | 435 |
| Msa0303040 | AT2G31370.3 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.05e-151 | 435 |
| Msa0303040 | AT2G31370.6 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.05e-151 | 435 |
| Msa0303040 | AT2G40620.1 | 49.231 | 260 | 95 | 7 | 66 | 324 | 28 | 251 | 2.15e-61 | 203 |
| Msa0303040 | AT1G43700.1 | 49.746 | 197 | 90 | 3 | 161 | 348 | 129 | 325 | 2.14e-49 | 171 |
| Msa0303040 | AT1G06850.1 | 52.459 | 183 | 61 | 2 | 204 | 360 | 131 | 313 | 4.19e-48 | 167 |
| Msa0303040 | AT4G38900.2 | 67.769 | 121 | 39 | 0 | 199 | 319 | 372 | 492 | 1.22e-45 | 166 |
| Msa0303040 | AT4G38900.3 | 67.769 | 121 | 39 | 0 | 199 | 319 | 372 | 492 | 1.22e-45 | 166 |
| Msa0303040 | AT4G38900.1 | 41.328 | 271 | 99 | 7 | 109 | 319 | 228 | 498 | 3.54e-43 | 159 |
| Msa0303040 | AT2G21230.4 | 63.415 | 123 | 45 | 0 | 196 | 318 | 345 | 467 | 1.31e-42 | 157 |
| Msa0303040 | AT2G21230.1 | 63.415 | 123 | 45 | 0 | 196 | 318 | 345 | 467 | 1.31e-42 | 157 |
| Msa0303040 | AT2G21230.3 | 59.690 | 129 | 46 | 1 | 196 | 318 | 345 | 473 | 1.39e-39 | 149 |
| Msa0303040 | AT2G21230.2 | 65.421 | 107 | 37 | 0 | 196 | 302 | 345 | 451 | 6.78e-37 | 140 |
| Msa0303040 | AT1G06850.2 | 76.712 | 73 | 17 | 0 | 204 | 276 | 131 | 203 | 8.33e-27 | 107 |
| Msa0303040 | AT2G42380.2 | 47.000 | 100 | 53 | 0 | 219 | 318 | 184 | 283 | 5.76e-20 | 90.5 |
| Msa0303040 | AT3G58120.1 | 47.959 | 98 | 51 | 0 | 221 | 318 | 202 | 299 | 1.01e-19 | 90.1 |
| Msa0303040 | AT2G12900.1 | 34.109 | 129 | 77 | 1 | 196 | 316 | 83 | 211 | 1.37e-18 | 85.5 |
| Msa0303040 | AT2G42380.5 | 47.619 | 84 | 44 | 0 | 219 | 302 | 184 | 267 | 3.48e-17 | 81.6 |
| Msa0303040 | AT3G58120.2 | 49.367 | 79 | 40 | 0 | 221 | 299 | 202 | 280 | 4.64e-16 | 78.6 |
| Msa0303040 | AT2G13150.1 | 37.615 | 109 | 67 | 1 | 207 | 315 | 136 | 243 | 6.18e-16 | 77.8 |
| Msa0303040 | AT2G12940.1 | 34.188 | 117 | 76 | 1 | 197 | 313 | 125 | 240 | 3.02e-15 | 76.3 |
| Msa0303040 | AT2G42380.1 | 42.000 | 100 | 47 | 1 | 219 | 318 | 184 | 272 | 1.29e-13 | 71.6 |
| Msa0303040 | AT2G21235.1 | 43.678 | 87 | 49 | 0 | 221 | 307 | 359 | 445 | 3.34e-13 | 72.0 |
| Msa0303040 | AT1G58110.1 | 41.860 | 86 | 50 | 0 | 230 | 315 | 238 | 323 | 1.21e-11 | 66.2 |
| Msa0303040 | AT1G58110.2 | 41.860 | 86 | 50 | 0 | 230 | 315 | 238 | 323 | 1.21e-11 | 66.2 |
| Msa0303040 | AT2G42380.3 | 60.000 | 45 | 18 | 0 | 219 | 263 | 184 | 228 | 7.67e-11 | 62.4 |
| Msa0303040 | AT2G42380.4 | 60.000 | 45 | 18 | 0 | 219 | 263 | 184 | 228 | 7.67e-11 | 62.4 |
Find 150 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGTGCTGGTGTCTGATTC+TGG | 0.087788 | 2_3:+60077085 | None:intergenic |
| TCCCCTTTCTCTCTATTTCT+AGG | 0.178092 | 2_3:-60077935 | Msa0303040:five_prime_UTR |
| CCTATGAACTTTAATTCTTT+TGG | 0.197858 | 2_3:-60074673 | Msa0303040:CDS |
| TTCTTGGCATCTCAGTTAAT+TGG | 0.220227 | 2_3:-60074190 | Msa0303040:three_prime_UTR |
| GTGATTGCTTAGTGTTGTTT+AGG | 0.228415 | 2_3:-60077637 | Msa0303040:five_prime_UTR |
| GCTGTTTCTGAGGATGAATT+TGG | 0.240472 | 2_3:+60074575 | None:intergenic |
| TGAAGTGATTGAACTGGATT+AGG | 0.244656 | 2_3:-60077664 | Msa0303040:five_prime_UTR |
| ATCTGATGAAGGATTATCTT+TGG | 0.251730 | 2_3:+60074405 | None:intergenic |
| CCATGCCATGCACACTCTTT+TGG | 0.268695 | 2_3:-60074620 | Msa0303040:CDS |
| TGTATAATACTAAAATTTCT+TGG | 0.277005 | 2_3:-60074206 | Msa0303040:three_prime_UTR |
| GTGCATGGCATGGTTATTAT+TGG | 0.277488 | 2_3:+60074630 | None:intergenic |
| TCAGGAGGAGGTACCTCTTC+TGG | 0.279881 | 2_3:-60077143 | Msa0303040:CDS |
| CTAGAATCTGAGCTGGTTCC+AGG | 0.284646 | 2_3:+60077464 | None:intergenic |
| TTCCGAGATTCTTACCTTGC+CGG | 0.302193 | 2_3:-60077372 | Msa0303040:CDS |
| ACCTTTGCGCCGCGTAGATC+AGG | 0.306683 | 2_3:+60077883 | None:intergenic |
| ACCTCCATCAGGACGTTATC+CGG | 0.323576 | 2_3:-60077558 | Msa0303040:CDS |
| TACCTCTTCTGGGGAAAATA+TGG | 0.331870 | 2_3:-60077132 | Msa0303040:CDS |
| TGATTGCTTAGTGTTGTTTA+GGG | 0.334346 | 2_3:-60077636 | Msa0303040:five_prime_UTR |
| TCTGATGAAGGATTATCTTT+GGG | 0.340833 | 2_3:+60074406 | None:intergenic |
| CTGTGCTGGTGTCTGATTCT+GGG | 0.348924 | 2_3:+60077086 | None:intergenic |
| ACAAATGCAGCAGCAGCAGC+AGG | 0.359774 | 2_3:-60074485 | Msa0303040:CDS |
| GAAGTGATTGAACTGGATTA+GGG | 0.360372 | 2_3:-60077663 | Msa0303040:five_prime_UTR |
| TTTGTTGCTGCTGTATTTGT+TGG | 0.370991 | 2_3:+60074518 | None:intergenic |
| TGCACAGTTAACTCTCTTAC+AGG | 0.371836 | 2_3:-60075391 | Msa0303040:intron |
| TTGTTGATTGAGATGGTATA+GGG | 0.373709 | 2_3:-60074110 | Msa0303040:three_prime_UTR |
| CCCCTTTCTCTCTATTTCTA+GGG | 0.376649 | 2_3:-60077934 | Msa0303040:five_prime_UTR |
| CAGGAGGAGGTACCTCTTCT+GGG | 0.381898 | 2_3:-60077142 | Msa0303040:CDS |
| GTTGTCCATGTACCTTGATA+TGG | 0.382193 | 2_3:-60077267 | Msa0303040:CDS |
| CGCAGTTTCTCAACAATCCT+TGG | 0.383849 | 2_3:+60074366 | None:intergenic |
| TCGTATCCGCCGCTTGCTCC+TGG | 0.385842 | 2_3:-60077482 | Msa0303040:CDS |
| TTTGTTGATTGAGATGGTAT+AGG | 0.386419 | 2_3:-60074111 | Msa0303040:three_prime_UTR |
| GTCTAATGCTGCCGGAGCAT+CGG | 0.391354 | 2_3:-60077195 | Msa0303040:CDS |
| TGCTGCCGGAGCATCGGGTT+TGG | 0.393129 | 2_3:-60077189 | Msa0303040:CDS |
| CGGAATGAAGAGAGAGAAAG+TGG | 0.396602 | 2_3:+60077967 | None:intergenic |
| CATCCATGGACTGGCTGTGC+TGG | 0.409055 | 2_3:+60077072 | None:intergenic |
| GGAGCAACAAGTTCACTTGC+AGG | 0.420631 | 2_3:-60075188 | Msa0303040:CDS |
| TCTAATGCTGCCGGAGCATC+GGG | 0.422071 | 2_3:-60077194 | Msa0303040:CDS |
| AATGGAAAAGGACAAATCAT+TGG | 0.426956 | 2_3:-60077600 | Msa0303040:CDS |
| TTGACCCCAAGCGTGCAAAA+AGG | 0.430308 | 2_3:-60076941 | Msa0303040:intron |
| CAAGGCAAGTTCTGCAAGCT+TGG | 0.432209 | 2_3:+60076965 | None:intergenic |
| AACCCTAGAAATAGAGAGAA+AGG | 0.437708 | 2_3:+60077932 | None:intergenic |
| TGCACGCTTGGGGTCAATCA+AGG | 0.439782 | 2_3:+60076947 | None:intergenic |
| GTTTGATTCGTTGACGAGAA+TGG | 0.440805 | 2_3:-60078061 | Msa0303040:five_prime_UTR |
| GAGAAAGGGGAAATGAATAT+CGG | 0.452502 | 2_3:+60077947 | None:intergenic |
| TTTAAATGACGCGTTAAAAG+AGG | 0.453730 | 2_3:-60074749 | Msa0303040:CDS |
| CTTAGTGTTGTTTAGGGTCA+AGG | 0.453918 | 2_3:-60077630 | Msa0303040:five_prime_UTR |
| TATCCGGGTTATTCACCAAC+TGG | 0.455335 | 2_3:-60077542 | Msa0303040:CDS |
| GTAACAGGATATGGGCAAAT+AGG | 0.455791 | 2_3:-60075509 | Msa0303040:intron |
| CAAGTGAACTTGTTGCTCCA+TGG | 0.458049 | 2_3:+60075192 | None:intergenic |
| TGCATGGCATGGTTATTATT+GGG | 0.461227 | 2_3:+60074631 | None:intergenic |
| ATTTGTGTGTAACAGGATAT+GGG | 0.465089 | 2_3:-60075517 | Msa0303040:intron |
| GTTTACTTTGTTGATTGAGA+TGG | 0.465856 | 2_3:-60074117 | Msa0303040:three_prime_UTR |
| GGCTATGAATATATCAATGT+AGG | 0.467004 | 2_3:-60074169 | Msa0303040:three_prime_UTR |
| TGGCGCCAAACCCGATGCTC+CGG | 0.468192 | 2_3:+60077184 | None:intergenic |
| GTAGATCAGGGGAGATAGAT+TGG | 0.469223 | 2_3:+60077896 | None:intergenic |
| AAATCATTGGGTCTTGGCGG+TGG | 0.469321 | 2_3:-60077587 | Msa0303040:CDS |
| CAAACCTGAGATGTTAATCT+CGG | 0.472947 | 2_3:-60077036 | Msa0303040:CDS |
| TTCATCAGATGTAAATCCTT+CGG | 0.478143 | 2_3:-60074392 | Msa0303040:CDS |
| AAGTTCATAGGTCCTCCATT+TGG | 0.480765 | 2_3:+60074685 | None:intergenic |
| CCAAAAGAATTAAAGTTCAT+AGG | 0.483391 | 2_3:+60074673 | None:intergenic |
| CGTCTATGACCTCTATTTCT+CGG | 0.485976 | 2_3:+60077401 | None:intergenic |
| CCTTTGCGCCGCGTAGATCA+GGG | 0.489306 | 2_3:+60077884 | None:intergenic |
| GCGGCGGATACGACGATGAT+GGG | 0.489367 | 2_3:+60077492 | None:intergenic |
| GGTTATTCACCAACTGGAAG+TGG | 0.489501 | 2_3:-60077536 | Msa0303040:CDS |
| AAGGACAAATCATTGGGTCT+TGG | 0.496632 | 2_3:-60077593 | Msa0303040:CDS |
| CAAGGAATCGTGAATGGAAA+AGG | 0.498524 | 2_3:-60077612 | Msa0303040:exon |
| GGGCAAGCTATGCCGCCAAA+TGG | 0.498892 | 2_3:-60074700 | Msa0303040:CDS |
| ACCCTAGAAATAGAGAGAAA+GGG | 0.501328 | 2_3:+60077933 | None:intergenic |
| GGTGTAGTTGGTGGTGCTGA+TGG | 0.502800 | 2_3:-60077323 | Msa0303040:CDS |
| CTTGGTGTCCTAGTGTTGGT+AGG | 0.502821 | 2_3:-60074312 | Msa0303040:three_prime_UTR |
| GACAAATCATTGGGTCTTGG+CGG | 0.504559 | 2_3:-60077590 | Msa0303040:CDS |
| GAAGGATTTACATCTGATGA+AGG | 0.504672 | 2_3:+60074394 | None:intergenic |
| CGCATTTGAAAGTACTGACT+GGG | 0.505823 | 2_3:-60074720 | Msa0303040:CDS |
| ATGGAAAAGGACAAATCATT+GGG | 0.507816 | 2_3:-60077599 | Msa0303040:CDS |
| GATAGTGACCTCGGTGTAGT+TGG | 0.507851 | 2_3:-60077335 | Msa0303040:CDS |
| AGCGGCGGATACGACGATGA+TGG | 0.508995 | 2_3:+60077491 | None:intergenic |
| TTCATAGGTCCTCCATTTGG+CGG | 0.509377 | 2_3:+60074688 | None:intergenic |
| CAGCACAGCCAGTCCATGGA+TGG | 0.510016 | 2_3:-60077071 | Msa0303040:CDS |
| CAACAATCCTTGGCTGCCGA+AGG | 0.516507 | 2_3:+60074376 | None:intergenic |
| CTATCAAAGCTAATATCATC+CGG | 0.517208 | 2_3:+60077353 | None:intergenic |
| GATTGTTGTTGACCCATCCA+TGG | 0.518412 | 2_3:+60077058 | None:intergenic |
| TATAGGAAGGGCAGTTGCTA+AGG | 0.518572 | 2_3:+60074084 | None:intergenic |
| CTTATCCATATCAAGGTACA+TGG | 0.520173 | 2_3:+60077262 | None:intergenic |
| ATGTCGGTAGGGCAGACATC+AGG | 0.524354 | 2_3:-60077161 | Msa0303040:CDS |
| GCTATATTGCTGAGCTTGAA+AGG | 0.525278 | 2_3:-60075452 | Msa0303040:CDS |
| CCTCCATCAGGACGTTATCC+GGG | 0.528655 | 2_3:-60077557 | Msa0303040:CDS |
| ATCGGGTTTGGCGCCAATGT+CGG | 0.530842 | 2_3:-60077177 | Msa0303040:CDS |
| GGTTTGGCGCCAATGTCGGT+AGG | 0.535811 | 2_3:-60077173 | Msa0303040:CDS |
| GATGTCTGCCCTACCGACAT+TGG | 0.538923 | 2_3:+60077164 | None:intergenic |
| TAGGGTCAAGGAATCGTGAA+TGG | 0.539205 | 2_3:-60077618 | Msa0303040:exon |
| ATCCGGCAAGGTAAGAATCT+CGG | 0.540794 | 2_3:+60077370 | None:intergenic |
| CTGCGGCAAGGTCAAAAGAA+AGG | 0.542300 | 2_3:-60075482 | Msa0303040:CDS |
| CATGGACAACAAATCTTCCT+CGG | 0.543636 | 2_3:+60077280 | None:intergenic |
| CCCTGATCTACGCGGCGCAA+AGG | 0.544257 | 2_3:-60077884 | Msa0303040:intron |
| GAAGGATTATCTTTGGGGCA+TGG | 0.547961 | 2_3:+60074412 | None:intergenic |
| AATTGAACTTATCCATATCA+AGG | 0.549561 | 2_3:+60077255 | None:intergenic |
| TGTAAATCCTTCGGCAGCCA+AGG | 0.553319 | 2_3:-60074383 | Msa0303040:CDS |
| GCTATGAATATATCAATGTA+GGG | 0.556993 | 2_3:-60074168 | Msa0303040:three_prime_UTR |
| GAACCCGAGATTAACATCTC+AGG | 0.557523 | 2_3:+60077032 | None:intergenic |
| ACGCATTTGAAAGTACTGAC+TGG | 0.558522 | 2_3:-60074721 | Msa0303040:CDS |
| TTGTCTTGGTGTCCTAGTGT+TGG | 0.558889 | 2_3:-60074316 | Msa0303040:three_prime_UTR |
| ACACCAGCACAGCCAGTCCA+TGG | 0.559692 | 2_3:-60077075 | Msa0303040:CDS |
| CCCTAGAAATAGAGAGAAAG+GGG | 0.561303 | 2_3:+60077934 | None:intergenic |
| GGTGAGGGGTCTAATGCTGC+CGG | 0.563134 | 2_3:-60077203 | Msa0303040:CDS |
| TTGTTGACCCATCCATGGAC+TGG | 0.565600 | 2_3:+60077063 | None:intergenic |
| GAAAGTGCAGACATTGCAAA+CGG | 0.566063 | 2_3:-60075430 | Msa0303040:CDS |
| AAACCTGAGATGTTAATCTC+GGG | 0.567313 | 2_3:-60077035 | Msa0303040:CDS |
| GATAATCCTCCGAGAAATAG+AGG | 0.571302 | 2_3:-60077410 | Msa0303040:CDS |
| TGATGTTGCTGCTGTTTCTG+AGG | 0.574585 | 2_3:+60074565 | None:intergenic |
| CAAGCTATGCCGCCAAATGG+AGG | 0.574883 | 2_3:-60074697 | Msa0303040:CDS |
| CTGATGAAGGATTATCTTTG+GGG | 0.574967 | 2_3:+60074407 | None:intergenic |
| CGGCGGATACGACGATGATG+GGG | 0.587072 | 2_3:+60077493 | None:intergenic |
| AAAGCCACTAGAATCTGAGC+TGG | 0.591242 | 2_3:+60077457 | None:intergenic |
| CCAAAAGAGTGTGCATGGCA+TGG | 0.592655 | 2_3:+60074620 | None:intergenic |
| CTTCCAGTTGGTGAATAACC+CGG | 0.596092 | 2_3:+60077539 | None:intergenic |
| GGATAACGTCCTGATGGAGG+TGG | 0.599011 | 2_3:+60077560 | None:intergenic |
| ATTAGCTTTGATAGTGACCT+CGG | 0.599687 | 2_3:-60077344 | Msa0303040:CDS |
| ACATTGAAACCACTTCCAGT+TGG | 0.606876 | 2_3:+60077527 | None:intergenic |
| TGCAGCCAAAAGAGTGTGCA+TGG | 0.611169 | 2_3:+60074615 | None:intergenic |
| AGTGACCTCGGTGTAGTTGG+TGG | 0.612819 | 2_3:-60077332 | Msa0303040:CDS |
| GTTTGGCGCCAATGTCGGTA+GGG | 0.616468 | 2_3:-60077172 | Msa0303040:CDS |
| AGCACAGCCAGTCCATGGAT+GGG | 0.619422 | 2_3:-60077070 | Msa0303040:CDS |
| GAGCTGGTTCCAGGAGCAAG+CGG | 0.619940 | 2_3:+60077473 | None:intergenic |
| GAAGCTGCGGTTGCAAACCA+TGG | 0.620439 | 2_3:-60075209 | Msa0303040:CDS |
| CAACAAGTTCACTTGCAGGA+TGG | 0.622286 | 2_3:-60075184 | Msa0303040:intron |
| TAACCCGGATAACGTCCTGA+TGG | 0.622648 | 2_3:+60077554 | None:intergenic |
| CTGGTTCCAGGAGCAAGCGG+CGG | 0.624878 | 2_3:+60077476 | None:intergenic |
| AAAGCTAATATCATCCGGCA+AGG | 0.625947 | 2_3:+60077358 | None:intergenic |
| CAAATAGGCAGTCTGCGGCA+AGG | 0.630192 | 2_3:-60075494 | Msa0303040:CDS |
| TCTGGGGAAAATATGGCAGT+CGG | 0.630934 | 2_3:-60077125 | Msa0303040:CDS |
| CCCGGATAACGTCCTGATGG+AGG | 0.636399 | 2_3:+60077557 | None:intergenic |
| TCGGTAGGGCAGACATCAGG+AGG | 0.636796 | 2_3:-60077158 | Msa0303040:CDS |
| GGCTGCAACCTACCAACACT+AGG | 0.637292 | 2_3:+60074304 | None:intergenic |
| CAGTCGGTACTACAAATGAA+AGG | 0.639281 | 2_3:-60077109 | Msa0303040:CDS |
| CTTTGCGCCGCGTAGATCAG+GGG | 0.647338 | 2_3:+60077885 | None:intergenic |
| GGAACCAGCTCAGATTCTAG+TGG | 0.650014 | 2_3:-60077461 | Msa0303040:CDS |
| GGATTATCTTTGGGGCATGG+AGG | 0.651440 | 2_3:+60074415 | None:intergenic |
| AGGAGGAGGTACCTCTTCTG+GGG | 0.666286 | 2_3:-60077141 | Msa0303040:CDS |
| ATGAACAGAGAGATACAAGT+GGG | 0.666459 | 2_3:-60075255 | Msa0303040:intron |
| GTAGGGCAGACATCAGGAGG+AGG | 0.666831 | 2_3:-60077155 | Msa0303040:CDS |
| AAGTGATTGAACTGGATTAG+GGG | 0.672133 | 2_3:-60077662 | Msa0303040:five_prime_UTR |
| CTATGACCTCTATTTCTCGG+AGG | 0.675680 | 2_3:+60077404 | None:intergenic |
| ATGGGCAAATAGGCAGTCTG+CGG | 0.682103 | 2_3:-60075499 | Msa0303040:CDS |
| AGAACAGTGAGCTGAAGCTG+CGG | 0.689015 | 2_3:-60075222 | Msa0303040:CDS |
| GTCGTTCTCTGATGATACCG+AGG | 0.690738 | 2_3:-60077297 | Msa0303040:CDS |
| TATGAACAGAGAGATACAAG+TGG | 0.694542 | 2_3:-60075256 | Msa0303040:intron |
| GGCGGATACGACGATGATGG+GGG | 0.706397 | 2_3:+60077494 | None:intergenic |
| TCTATCTCCCCTGATCTACG+CGG | 0.750401 | 2_3:-60077892 | Msa0303040:five_prime_UTR |
| TCGGTATCATCAGAGAACGA+CGG | 0.752661 | 2_3:+60077299 | None:intergenic |
| CAGCACCACCAACTACACCG+AGG | 0.826194 | 2_3:+60077327 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTATTAATTTGTTACT+AGG | - | chr2_3:60074475-60074494 | Msa0303040:CDS | 10.0% |
| !!! | TTATTATTAATTTGTTACTA+GGG | - | chr2_3:60074476-60074495 | Msa0303040:CDS | 10.0% |
| !! | AAAATAACTAAGAAACATTA+TGG | + | chr2_3:60075279-60075298 | None:intergenic | 15.0% |
| !! | ACAGAATAATATATAACATT+TGG | + | chr2_3:60075351-60075370 | None:intergenic | 15.0% |
| !!! | TCAAATTTTAGAAAATGTAT+TGG | - | chr2_3:60075661-60075680 | Msa0303040:intron | 15.0% |
| !!! | CAAATTTTAGAAAATGTATT+GGG | - | chr2_3:60075662-60075681 | Msa0303040:intron | 15.0% |
| !!! | TATTGTATACTTTATTTTTG+TGG | - | chr2_3:60075902-60075921 | Msa0303040:intron | 15.0% |
| !!! | AAAATTGTAAGATTTTTCTA+AGG | - | chr2_3:60075978-60075997 | Msa0303040:intron | 15.0% |
| !!! | TTATTTTCTAAAACTGTTTT+TGG | - | chr2_3:60076327-60076346 | Msa0303040:intron | 15.0% |
| !!! | TATTTTCTAAAACTGTTTTT+GGG | - | chr2_3:60076328-60076347 | Msa0303040:intron | 15.0% |
| !!! | AGGACTATATTAATATTTTT+TGG | - | chr2_3:60076882-60076901 | Msa0303040:intron | 15.0% |
| !! | AGTATTTATTTAATGCAATA+TGG | - | chr2_3:60077096-60077115 | Msa0303040:CDS | 15.0% |
| !! | GACAAATATATTAATCTATT+GGG | + | chr2_3:60077178-60077197 | None:intergenic | 15.0% |
| !! | AGACAAATATATTAATCTAT+TGG | + | chr2_3:60077179-60077198 | None:intergenic | 15.0% |
| !! | TAGATTAATATATTTGTCTT+AGG | - | chr2_3:60077180-60077199 | Msa0303040:CDS | 15.0% |
| !! | TAAGAATAAAAAATAGAACA+AGG | + | chr2_3:60077886-60077905 | None:intergenic | 15.0% |
| !! | TGTATAATACTAAAATTTCT+TGG | - | chr2_3:60077960-60077979 | Msa0303040:five_prime_UTR | 15.0% |
| !! | AGATAACAAAAGAGAAAAAT+TGG | + | chr2_3:60074381-60074400 | None:intergenic | 20.0% |
| !! | TAATCTAGCATTCATAAATT+AGG | - | chr2_3:60075384-60075403 | Msa0303040:intron | 20.0% |
| !! | AAACATGTTTATAAGCTATA+TGG | + | chr2_3:60075613-60075632 | None:intergenic | 20.0% |
| !! | TTGTGTTTATTAATTTCAAC+AGG | + | chr2_3:60075801-60075820 | None:intergenic | 20.0% |
| !! | TGAAATTAATAAACACAACA+AGG | - | chr2_3:60075803-60075822 | Msa0303040:intron | 20.0% |
| !!! | ACAAAAATATAGTGTTATTG+TGG | + | chr2_3:60075845-60075864 | None:intergenic | 20.0% |
| !!! | ACAATAACACTATATTTTTG+TGG | - | chr2_3:60075844-60075863 | Msa0303040:intron | 20.0% |
| !!! | ATACAAAATATTGTAGGTTT+TGG | - | chr2_3:60075926-60075945 | Msa0303040:intron | 20.0% |
| !! | TTCCAAAAAATCTCATTATT+GGG | - | chr2_3:60076362-60076381 | Msa0303040:intron | 20.0% |
| ! | GTTGAAAATTGAAATGATGA+AGG | + | chr2_3:60074322-60074341 | None:intergenic | 25.0% |
| !! | AATGAGCTAGTTTAAGAAAT+TGG | - | chr2_3:60074409-60074428 | Msa0303040:CDS | 25.0% |
| !! | ATGAGCTAGTTTAAGAAATT+GGG | - | chr2_3:60074410-60074429 | Msa0303040:CDS | 25.0% |
| ! | AATTGAACTTATCCATATCA+AGG | + | chr2_3:60074914-60074933 | None:intergenic | 25.0% |
| ! | TTTCTCTTTCACTATCATTT+CGG | - | chr2_3:60075558-60075577 | Msa0303040:intron | 25.0% |
| ! | ATGAGAAAAAATCTCAGAAA+TGG | - | chr2_3:60075727-60075746 | Msa0303040:intron | 25.0% |
| !! | GGTACTTTTGTATTATACAT+AGG | + | chr2_3:60075776-60075795 | None:intergenic | 25.0% |
| ! | GTTTATTAATTTCAACAGGA+AGG | + | chr2_3:60075797-60075816 | None:intergenic | 25.0% |
| ! | TTCAAATACTACCAAAACAA+TGG | + | chr2_3:60076301-60076320 | None:intergenic | 25.0% |
| ! | CTTCCAAAAAATCTCATTAT+TGG | - | chr2_3:60076361-60076380 | Msa0303040:intron | 25.0% |
| ! | TGCAATAGATAAAGCAAAAT+AGG | + | chr2_3:60076528-60076547 | None:intergenic | 25.0% |
| !! | TTTTCTTTCTATCTCTTTTG+TGG | - | chr2_3:60076584-60076603 | Msa0303040:intron | 25.0% |
| ! | AGGAAACATTTATAATGTTG+TGG | + | chr2_3:60077013-60077032 | None:intergenic | 25.0% |
| ! | TATCCTTGCAATTTACAATA+TGG | - | chr2_3:60077130-60077149 | Msa0303040:CDS | 25.0% |
| ! | ATACCATATTGTAAATTGCA+AGG | + | chr2_3:60077136-60077155 | None:intergenic | 25.0% |
| ! | AATATATTTGTCTTAGGTGA+AGG | - | chr2_3:60077186-60077205 | Msa0303040:CDS | 25.0% |
| ! | CCAAAAGAATTAAAGTTCAT+AGG | + | chr2_3:60077496-60077515 | None:intergenic | 25.0% |
| !! | CCTATGAACTTTAATTCTTT+TGG | - | chr2_3:60077493-60077512 | Msa0303040:CDS | 25.0% |
| !! | ATGAACTTTAATTCTTTTGG+AGG | - | chr2_3:60077496-60077515 | Msa0303040:CDS | 25.0% |
| !! | CTTTTTAGATTTCATTGTCT+TGG | - | chr2_3:60077836-60077855 | Msa0303040:intron | 25.0% |
| ! | GCTATGAATATATCAATGTA+GGG | - | chr2_3:60077998-60078017 | Msa0303040:intron | 25.0% |
| !! | GATTTTGTCAAATCTACAAT+AGG | - | chr2_3:60078023-60078042 | Msa0303040:five_prime_UTR | 25.0% |
| !! | TGATTGCTTAGTGTTGTTTA+GGG | - | chr2_3:60074530-60074549 | Msa0303040:CDS | 30.0% |
| AATGGAAAAGGACAAATCAT+TGG | - | chr2_3:60074566-60074585 | Msa0303040:CDS | 30.0% | |
| ATGGAAAAGGACAAATCATT+GGG | - | chr2_3:60074567-60074586 | Msa0303040:CDS | 30.0% | |
| CTATCAAAGCTAATATCATC+CGG | + | chr2_3:60074816-60074835 | None:intergenic | 30.0% | |
| ! | AGCAACGTCTAATTTTCAAA+TGG | - | chr2_3:60074941-60074960 | Msa0303040:intron | 30.0% |
| ! | GCAACGTCTAATTTTCAAAT+GGG | - | chr2_3:60074942-60074961 | Msa0303040:intron | 30.0% |
| ! | TCTAATTTTCAAATGGGTGA+GGG | - | chr2_3:60074948-60074967 | Msa0303040:intron | 30.0% |
| !!! | TGACATTGCTTTTTTGGAAT+CGG | + | chr2_3:60075177-60075196 | None:intergenic | 30.0% |
| TTCTCTTTCACTATCATTTC+GGG | - | chr2_3:60075559-60075578 | Msa0303040:intron | 30.0% | |
| ! | TTCGGGATAATTTTATTCAC+TGG | - | chr2_3:60075576-60075595 | Msa0303040:intron | 30.0% |
| CATGTTTAGCAAAACTATTG+AGG | - | chr2_3:60075626-60075645 | Msa0303040:intron | 30.0% | |
| ! | TGTTATTGTGGTTCATGTTT+TGG | + | chr2_3:60075833-60075852 | None:intergenic | 30.0% |
| ! | GCAAAATATTGTAGGTTTTG+TGG | - | chr2_3:60075870-60075889 | Msa0303040:intron | 30.0% |
| TGTGGCATACAAAATATTGT+AGG | - | chr2_3:60075888-60075907 | Msa0303040:intron | 30.0% | |
| GGTATACTTTGCAATTGATA+AGG | - | chr2_3:60075947-60075966 | Msa0303040:intron | 30.0% | |
| ATACTTTGCAATTGATAAGG+AGG | - | chr2_3:60075950-60075969 | Msa0303040:intron | 30.0% | |
| ! | TTGTTGTTGTTGTTGTTCTA+AGG | - | chr2_3:60076016-60076035 | Msa0303040:intron | 30.0% |
| ACTGAAAGAAAATGTTGGAA+TGG | - | chr2_3:60076042-60076061 | Msa0303040:intron | 30.0% | |
| AGTTAATCTTACCTAGCATT+TGG | + | chr2_3:60076128-60076147 | None:intergenic | 30.0% | |
| TAACTACAATAGACCCATAA+TGG | - | chr2_3:60076143-60076162 | Msa0303040:intron | 30.0% | |
| AACTACAATAGACCCATAAT+GGG | - | chr2_3:60076144-60076163 | Msa0303040:intron | 30.0% | |
| TACTTCCATGATAACATCTA+GGG | + | chr2_3:60076180-60076199 | None:intergenic | 30.0% | |
| !!! | GTTGCGTTTTATTTACTTGA+AGG | - | chr2_3:60076215-60076234 | Msa0303040:intron | 30.0% |
| AATATATGGCATTATCTCCT+GGG | - | chr2_3:60076502-60076521 | Msa0303040:intron | 30.0% | |
| TTTGCTTTATCTATTGCACT+TGG | - | chr2_3:60076530-60076549 | Msa0303040:intron | 30.0% | |
| ! | TTTCTATCTCTTTTGTGGTT+TGG | - | chr2_3:60076589-60076608 | Msa0303040:intron | 30.0% |
| ! | TTCTATCTCTTTTGTGGTTT+GGG | - | chr2_3:60076590-60076609 | Msa0303040:intron | 30.0% |
| TGCTTATATTTGTGTGTAAC+AGG | - | chr2_3:60076642-60076661 | Msa0303040:intron | 30.0% | |
| TATTTGTGTGTAACAGGATA+TGG | - | chr2_3:60076648-60076667 | Msa0303040:intron | 30.0% | |
| ATTTGTGTGTAACAGGATAT+GGG | - | chr2_3:60076649-60076668 | Msa0303040:intron | 30.0% | |
| CTGGTTTAAAAGCTAATAGT+AGG | - | chr2_3:60076862-60076881 | Msa0303040:intron | 30.0% | |
| AATTGCAAGGATATTACACA+CGG | + | chr2_3:60077123-60077142 | None:intergenic | 30.0% | |
| TATAAGCTTGAGAATATCCA+AGG | - | chr2_3:60077322-60077341 | Msa0303040:CDS | 30.0% | |
| TTTAAATGACGCGTTAAAAG+AGG | - | chr2_3:60077417-60077436 | Msa0303040:CDS | 30.0% | |
| !! | AACTTTAATTCTTTTGGAGG+AGG | - | chr2_3:60077499-60077518 | Msa0303040:CDS | 30.0% |
| !! | ACTTTAATTCTTTTGGAGGA+GGG | - | chr2_3:60077500-60077519 | Msa0303040:CDS | 30.0% |
| TCTGATGAAGGATTATCTTT+GGG | + | chr2_3:60077763-60077782 | None:intergenic | 30.0% | |
| ATCTGATGAAGGATTATCTT+TGG | + | chr2_3:60077764-60077783 | None:intergenic | 30.0% | |
| TTCATCAGATGTAAATCCTT+CGG | - | chr2_3:60077774-60077793 | Msa0303040:intron | 30.0% | |
| GGCTATGAATATATCAATGT+AGG | - | chr2_3:60077997-60078016 | Msa0303040:intron | 30.0% | |
| ! | GTTTACTTTGTTGATTGAGA+TGG | - | chr2_3:60078049-60078068 | Msa0303040:five_prime_UTR | 30.0% |
| ! | TTTGTTGATTGAGATGGTAT+AGG | - | chr2_3:60078055-60078074 | Msa0303040:five_prime_UTR | 30.0% |
| ! | TTGTTGATTGAGATGGTATA+GGG | - | chr2_3:60078056-60078075 | Msa0303040:five_prime_UTR | 30.0% |
| GAGAAAGGGGAAATGAATAT+CGG | + | chr2_3:60074222-60074241 | None:intergenic | 35.0% | |
| ACCCTAGAAATAGAGAGAAA+GGG | + | chr2_3:60074236-60074255 | None:intergenic | 35.0% | |
| AACCCTAGAAATAGAGAGAA+AGG | + | chr2_3:60074237-60074256 | None:intergenic | 35.0% | |
| TGAAGTGATTGAACTGGATT+AGG | - | chr2_3:60074502-60074521 | Msa0303040:CDS | 35.0% | |
| GAAGTGATTGAACTGGATTA+GGG | - | chr2_3:60074503-60074522 | Msa0303040:CDS | 35.0% | |
| ! | AAGTGATTGAACTGGATTAG+GGG | - | chr2_3:60074504-60074523 | Msa0303040:CDS | 35.0% |
| !! | GTGATTGCTTAGTGTTGTTT+AGG | - | chr2_3:60074529-60074548 | Msa0303040:CDS | 35.0% |
| !! | ATTAGCTTTGATAGTGACCT+CGG | - | chr2_3:60074822-60074841 | Msa0303040:intron | 35.0% |
| CTTATCCATATCAAGGTACA+TGG | + | chr2_3:60074907-60074926 | None:intergenic | 35.0% | |
| ! | GTCTAATTTTCAAATGGGTG+AGG | - | chr2_3:60074947-60074966 | Msa0303040:intron | 35.0% |
| ! | CTAATTTTCAAATGGGTGAG+GGG | - | chr2_3:60074949-60074968 | Msa0303040:intron | 35.0% |
| CAAACCTGAGATGTTAATCT+CGG | - | chr2_3:60075130-60075149 | Msa0303040:intron | 35.0% | |
| AAACCTGAGATGTTAATCTC+GGG | - | chr2_3:60075131-60075150 | Msa0303040:intron | 35.0% | |
| ! | TAATACCTTTTTGCACGCTT+GGG | + | chr2_3:60075233-60075252 | None:intergenic | 35.0% |
| ! | ATAATACCTTTTTGCACGCT+TGG | + | chr2_3:60075234-60075253 | None:intergenic | 35.0% |
| ! | CATGTTGGTGAAAAAAAAGG+TGG | + | chr2_3:60075500-60075519 | None:intergenic | 35.0% |
| AATGACAAAACAGAGCTTTG+AGG | + | chr2_3:60075532-60075551 | None:intergenic | 35.0% | |
| ! | TCAAAGCTCTGTTTTGTCAT+TGG | - | chr2_3:60075531-60075550 | Msa0303040:intron | 35.0% |
| TTTAGCAAAACTATTGAGGC+AGG | - | chr2_3:60075630-60075649 | Msa0303040:intron | 35.0% | |
| !! | TTTGAGACAGGATAGGATTT+TGG | - | chr2_3:60075687-60075706 | Msa0303040:intron | 35.0% |
| TGTGGCATGCAAAATATTGT+AGG | - | chr2_3:60075862-60075881 | Msa0303040:intron | 35.0% | |
| !!! | GATTTTTCTAAGGTCTACCA+AGG | - | chr2_3:60075988-60076007 | Msa0303040:intron | 35.0% |
| GGTCTACTGAAAGAAAATGT+TGG | - | chr2_3:60076037-60076056 | Msa0303040:intron | 35.0% | |
| ! | GCAAATGTTTTCCAAATGCT+AGG | - | chr2_3:60076114-60076133 | Msa0303040:intron | 35.0% |
| CTACTTCCATGATAACATCT+AGG | + | chr2_3:60076181-60076200 | None:intergenic | 35.0% | |
| CAAGTAAATAAAACGCAACC+TGG | + | chr2_3:60076214-60076233 | None:intergenic | 35.0% | |
| !!! | TCTAAAACTGTTTTTGGGTG+TGG | - | chr2_3:60076333-60076352 | Msa0303040:intron | 35.0% |
| !!! | GGCCCAATAATGAGATTTTT+TGG | + | chr2_3:60076367-60076386 | None:intergenic | 35.0% |
| !! | GGTATTGATGAAATACTGCT+CGG | - | chr2_3:60076413-60076432 | Msa0303040:intron | 35.0% |
| AGTTCCAGCTCATCAATATA+TGG | - | chr2_3:60076488-60076507 | Msa0303040:intron | 35.0% | |
| AATGCCATATATTGATGAGC+TGG | + | chr2_3:60076495-60076514 | None:intergenic | 35.0% | |
| CAATATATGGCATTATCTCC+TGG | - | chr2_3:60076501-60076520 | Msa0303040:intron | 35.0% | |
| CCAGCAAGTGAAATAGTAAT+TGG | + | chr2_3:60076846-60076865 | None:intergenic | 35.0% | |
| CCAATTACTATTTCACTTGC+TGG | - | chr2_3:60076843-60076862 | Msa0303040:intron | 35.0% | |
| TATGAACAGAGAGATACAAG+TGG | - | chr2_3:60076910-60076929 | Msa0303040:intron | 35.0% | |
| ATGAACAGAGAGATACAAGT+GGG | - | chr2_3:60076911-60076930 | Msa0303040:intron | 35.0% | |
| !! | TGGCTGCAAAATTTTGTTGT+TGG | - | chr2_3:60077228-60077247 | Msa0303040:CDS | 35.0% |
| !!! | GGCTGCAAAATTTTGTTGTT+GGG | - | chr2_3:60077229-60077248 | Msa0303040:CDS | 35.0% |
| !!! | GCAAAATTTTGTTGTTGGGT+TGG | - | chr2_3:60077233-60077252 | Msa0303040:CDS | 35.0% |
| TGCATGGCATGGTTATTATT+GGG | + | chr2_3:60077538-60077557 | None:intergenic | 35.0% | |
| TTTGTTGCTGCTGTATTTGT+TGG | + | chr2_3:60077651-60077670 | None:intergenic | 35.0% | |
| GAACAACAACAACAACAATC+AGG | - | chr2_3:60077703-60077722 | Msa0303040:intron | 35.0% | |
| CTGATGAAGGATTATCTTTG+GGG | + | chr2_3:60077762-60077781 | None:intergenic | 35.0% | |
| GAAGGATTTACATCTGATGA+AGG | + | chr2_3:60077775-60077794 | None:intergenic | 35.0% | |
| TTCTTGGCATCTCAGTTAAT+TGG | - | chr2_3:60077976-60077995 | Msa0303040:intron | 35.0% | |
| ! | GTTTGATTCGTTGACGAGAA+TGG | - | chr2_3:60074105-60074124 | Msa0303040:three_prime_UTR | 40.0% |
| ! | TCCCCTTTCTCTCTATTTCT+AGG | - | chr2_3:60074231-60074250 | Msa0303040:three_prime_UTR | 40.0% |
| CCCTAGAAATAGAGAGAAAG+GGG | + | chr2_3:60074235-60074254 | None:intergenic | 40.0% | |
| !! | CCCCTTTCTCTCTATTTCTA+GGG | - | chr2_3:60074232-60074251 | Msa0303040:three_prime_UTR | 40.0% |
| !!! | GGGTTTTGAAGTGATTGAAC+TGG | - | chr2_3:60074496-60074515 | Msa0303040:CDS | 40.0% |
| !! | CTTAGTGTTGTTTAGGGTCA+AGG | - | chr2_3:60074536-60074555 | Msa0303040:CDS | 40.0% |
| CAAGGAATCGTGAATGGAAA+AGG | - | chr2_3:60074554-60074573 | Msa0303040:CDS | 40.0% | |
| AAGGACAAATCATTGGGTCT+TGG | - | chr2_3:60074573-60074592 | Msa0303040:CDS | 40.0% | |
| ACATTGAAACCACTTCCAGT+TGG | + | chr2_3:60074642-60074661 | None:intergenic | 40.0% | |
| GATAATCCTCCGAGAAATAG+AGG | - | chr2_3:60074756-60074775 | Msa0303040:intron | 40.0% | |
| ! | CGTCTATGACCTCTATTTCT+CGG | + | chr2_3:60074768-60074787 | None:intergenic | 40.0% |
| AAAGCTAATATCATCCGGCA+AGG | + | chr2_3:60074811-60074830 | None:intergenic | 40.0% | |
| CATGGACAACAAATCTTCCT+CGG | + | chr2_3:60074889-60074908 | None:intergenic | 40.0% | |
| GTTGTCCATGTACCTTGATA+TGG | - | chr2_3:60074899-60074918 | Msa0303040:intron | 40.0% | |
| ! | TACCTCTTCTGGGGAAAATA+TGG | - | chr2_3:60075034-60075053 | Msa0303040:intron | 40.0% |
| CAGTCGGTACTACAAATGAA+AGG | - | chr2_3:60075057-60075076 | Msa0303040:intron | 40.0% | |
| ! | AATACCTTTTTGCACGCTTG+GGG | + | chr2_3:60075232-60075251 | None:intergenic | 40.0% |
| AGTCAATAATACAGACCGAG+TGG | + | chr2_3:60075476-60075495 | None:intergenic | 40.0% | |
| ! | CGGCATGTTGGTGAAAAAAA+AGG | + | chr2_3:60075503-60075522 | None:intergenic | 40.0% |
| !! | ACAGAGCTTTGAGGAATTCA+CGG | + | chr2_3:60075523-60075542 | None:intergenic | 40.0% |
| CAAAACTATTGAGGCAGGAT+AGG | - | chr2_3:60075635-60075654 | Msa0303040:intron | 40.0% | |
| !! | ATGTATTGGGTCTTTGAGAC+AGG | - | chr2_3:60075675-60075694 | Msa0303040:intron | 40.0% |
| CAACAACAACAACTAAGCCT+TGG | + | chr2_3:60076008-60076027 | None:intergenic | 40.0% | |
| CCATGATAACATCTAGGGAA+GGG | + | chr2_3:60076175-60076194 | None:intergenic | 40.0% | |
| TCCATGATAACATCTAGGGA+AGG | + | chr2_3:60076176-60076195 | None:intergenic | 40.0% | |
| ! | ACACACTCACACCATTGTTT+TGG | - | chr2_3:60076287-60076306 | Msa0303040:intron | 40.0% |
| GAAATACTGCTCGGATAGAA+TGG | - | chr2_3:60076422-60076441 | Msa0303040:intron | 40.0% | |
| ATAGAATGGCCTTCCTTAGA+GGG | - | chr2_3:60076436-60076455 | Msa0303040:intron | 40.0% | |
| AGATAAAGCAAAATAGGCCC+AGG | + | chr2_3:60076522-60076541 | None:intergenic | 40.0% | |
| TAAGCAGTGTTTGTCGATGT+TGG | + | chr2_3:60076628-60076647 | None:intergenic | 40.0% | |
| GTAACAGGATATGGGCAAAT+AGG | - | chr2_3:60076657-60076676 | Msa0303040:intron | 40.0% | |
| GCTATATTGCTGAGCTTGAA+AGG | - | chr2_3:60076714-60076733 | Msa0303040:intron | 40.0% | |
| ! | GAAAGTGCAGACATTGCAAA+CGG | - | chr2_3:60076736-60076755 | Msa0303040:intron | 40.0% |
| TGCACAGTTAACTCTCTTAC+AGG | - | chr2_3:60076775-60076794 | Msa0303040:intron | 40.0% | |
| AGCAGAAAAGTAGTAGCTTC+AGG | + | chr2_3:60077033-60077052 | None:intergenic | 40.0% | |
| AAGCTTGAGAATATCCAAGG+TGG | - | chr2_3:60077325-60077344 | Msa0303040:CDS | 40.0% | |
| TCAAGATAAACTGTCCACCT+TGG | + | chr2_3:60077342-60077361 | None:intergenic | 40.0% | |
| ! | ACGCGTCATTTAAAGCTACA+AGG | + | chr2_3:60077411-60077430 | None:intergenic | 40.0% |
| !! | ACGCATTTGAAAGTACTGAC+TGG | - | chr2_3:60077445-60077464 | Msa0303040:CDS | 40.0% |
| !! | CGCATTTGAAAGTACTGACT+GGG | - | chr2_3:60077446-60077465 | Msa0303040:CDS | 40.0% |
| AAGTTCATAGGTCCTCCATT+TGG | + | chr2_3:60077484-60077503 | None:intergenic | 40.0% | |
| GTGCATGGCATGGTTATTAT+TGG | + | chr2_3:60077539-60077558 | None:intergenic | 40.0% | |
| !! | GCTGTTTCTGAGGATGAATT+TGG | + | chr2_3:60077594-60077613 | None:intergenic | 40.0% |
| CGGAATGAAGAGAGAGAAAG+TGG | + | chr2_3:60074202-60074221 | None:intergenic | 45.0% | |
| GTAGATCAGGGGAGATAGAT+TGG | + | chr2_3:60074273-60074292 | None:intergenic | 45.0% | |
| TAGGGTCAAGGAATCGTGAA+TGG | - | chr2_3:60074548-60074567 | Msa0303040:CDS | 45.0% | |
| GACAAATCATTGGGTCTTGG+CGG | - | chr2_3:60074576-60074595 | Msa0303040:CDS | 45.0% | |
| TATCCGGGTTATTCACCAAC+TGG | - | chr2_3:60074624-60074643 | Msa0303040:CDS | 45.0% | |
| !! | CTTCCAGTTGGTGAATAACC+CGG | + | chr2_3:60074630-60074649 | None:intergenic | 45.0% |
| GGTTATTCACCAACTGGAAG+TGG | - | chr2_3:60074630-60074649 | Msa0303040:CDS | 45.0% | |
| AAAGCCACTAGAATCTGAGC+TGG | + | chr2_3:60074712-60074731 | None:intergenic | 45.0% | |
| ! | CTATGACCTCTATTTCTCGG+AGG | + | chr2_3:60074765-60074784 | None:intergenic | 45.0% |
| TTCCGAGATTCTTACCTTGC+CGG | - | chr2_3:60074794-60074813 | Msa0303040:intron | 45.0% | |
| ATCCGGCAAGGTAAGAATCT+CGG | + | chr2_3:60074799-60074818 | None:intergenic | 45.0% | |
| TCGGTATCATCAGAGAACGA+CGG | + | chr2_3:60074870-60074889 | None:intergenic | 45.0% | |
| ! | TGCCATATTTTCCCCAGAAG+AGG | + | chr2_3:60075039-60075058 | None:intergenic | 45.0% |
| TCTGGGGAAAATATGGCAGT+CGG | - | chr2_3:60075041-60075060 | Msa0303040:intron | 45.0% | |
| ! | GATTGTTGTTGACCCATCCA+TGG | + | chr2_3:60075111-60075130 | None:intergenic | 45.0% |
| GAACCCGAGATTAACATCTC+AGG | + | chr2_3:60075137-60075156 | None:intergenic | 45.0% | |
| !!! | GGCTGCTGACATTGCTTTTT+TGG | + | chr2_3:60075183-60075202 | None:intergenic | 45.0% |
| ATCCTGACGTGTATTCCACT+CGG | - | chr2_3:60075458-60075477 | Msa0303040:CDS | 45.0% | |
| TTGAGGAATTCACGGCATGT+TGG | + | chr2_3:60075515-60075534 | None:intergenic | 45.0% | |
| !! | TTGGGTCTTTGAGACAGGAT+AGG | - | chr2_3:60075680-60075699 | Msa0303040:intron | 45.0% |
| GATAACATCTAGGGAAGGGT+TGG | + | chr2_3:60076171-60076190 | None:intergenic | 45.0% | |
| CCCTTCCCTAGATGTTATCA+TGG | - | chr2_3:60076172-60076191 | Msa0303040:intron | 45.0% | |
| ATCAATACCTGCTGCAGTGT+GGG | + | chr2_3:60076402-60076421 | None:intergenic | 45.0% | |
| GATAGAATGGCCTTCCTTAG+AGG | - | chr2_3:60076435-60076454 | Msa0303040:intron | 45.0% | |
| TGTATAGACTGTGCCCTCTA+AGG | + | chr2_3:60076452-60076471 | None:intergenic | 45.0% | |
| !! | CAAGTGAACTTGTTGCTCCA+TGG | + | chr2_3:60076977-60076996 | None:intergenic | 45.0% |
| CAACAAGTTCACTTGCAGGA+TGG | - | chr2_3:60076982-60077001 | Msa0303040:CDS | 45.0% | |
| GTGCATGTTTAGTGTGAAGC+TGG | - | chr2_3:60077208-60077227 | Msa0303040:CDS | 45.0% | |
| TTCATAGGTCCTCCATTTGG+CGG | + | chr2_3:60077481-60077500 | None:intergenic | 45.0% | |
| !! | TGATGTTGCTGCTGTTTCTG+AGG | + | chr2_3:60077604-60077623 | None:intergenic | 45.0% |
| !! | GAAGGATTATCTTTGGGGCA+TGG | + | chr2_3:60077757-60077776 | None:intergenic | 45.0% |
| CGCAGTTTCTCAACAATCCT+TGG | + | chr2_3:60077803-60077822 | None:intergenic | 45.0% | |
| !! | TTGTCTTGGTGTCCTAGTGT+TGG | - | chr2_3:60077850-60077869 | Msa0303040:intron | 45.0% |
| TCTATCTCCCCTGATCTACG+CGG | - | chr2_3:60074274-60074293 | Msa0303040:three_prime_UTR | 50.0% | |
| AAATCATTGGGTCTTGGCGG+TGG | - | chr2_3:60074579-60074598 | Msa0303040:CDS | 50.0% | |
| ACCTCCATCAGGACGTTATC+CGG | - | chr2_3:60074608-60074627 | Msa0303040:CDS | 50.0% | |
| TAACCCGGATAACGTCCTGA+TGG | + | chr2_3:60074615-60074634 | None:intergenic | 50.0% | |
| ! | CTAGAATCTGAGCTGGTTCC+AGG | + | chr2_3:60074705-60074724 | None:intergenic | 50.0% |
| GGAACCAGCTCAGATTCTAG+TGG | - | chr2_3:60074705-60074724 | Msa0303040:CDS | 50.0% | |
| ! | GATAGTGACCTCGGTGTAGT+TGG | - | chr2_3:60074831-60074850 | Msa0303040:intron | 50.0% |
| GTCGTTCTCTGATGATACCG+AGG | - | chr2_3:60074869-60074888 | Msa0303040:intron | 50.0% | |
| ! | CTGTGCTGGTGTCTGATTCT+GGG | + | chr2_3:60075083-60075102 | None:intergenic | 50.0% |
| TTGTTGACCCATCCATGGAC+TGG | + | chr2_3:60075106-60075125 | None:intergenic | 50.0% | |
| CAAGGCAAGTTCTGCAAGCT+TGG | + | chr2_3:60075204-60075223 | None:intergenic | 50.0% | |
| TTGACCCCAAGCGTGCAAAA+AGG | - | chr2_3:60075225-60075244 | Msa0303040:CDS | 50.0% | |
| GGAAGGGTTGGACCCATTAT+GGG | + | chr2_3:60076159-60076178 | None:intergenic | 50.0% | |
| ! | GGAAGTAGCTCTATAGCACC+AGG | - | chr2_3:60076193-60076212 | Msa0303040:intron | 50.0% |
| CAGTGTGGGAAGGGATCAAA+AGG | + | chr2_3:60076388-60076407 | None:intergenic | 50.0% | |
| CATCAATACCTGCTGCAGTG+TGG | + | chr2_3:60076403-60076422 | None:intergenic | 50.0% | |
| ! | TAGACTGTGCCCTCTAAGGA+AGG | + | chr2_3:60076448-60076467 | None:intergenic | 50.0% |
| ATGGGCAAATAGGCAGTCTG+CGG | - | chr2_3:60076667-60076686 | Msa0303040:intron | 50.0% | |
| CTGCGGCAAGGTCAAAAGAA+AGG | - | chr2_3:60076684-60076703 | Msa0303040:intron | 50.0% | |
| AGAACAGTGAGCTGAAGCTG+CGG | - | chr2_3:60076944-60076963 | Msa0303040:CDS | 50.0% | |
| GGAGCAACAAGTTCACTTGC+AGG | - | chr2_3:60076978-60076997 | Msa0303040:CDS | 50.0% | |
| ! | CCAAAAGAGTGTGCATGGCA+TGG | + | chr2_3:60077549-60077568 | None:intergenic | 50.0% |
| ! | CCATGCCATGCACACTCTTT+TGG | - | chr2_3:60077546-60077565 | Msa0303040:CDS | 50.0% |
| ! | TGCAGCCAAAAGAGTGTGCA+TGG | + | chr2_3:60077554-60077573 | None:intergenic | 50.0% |
| !! | GGATTATCTTTGGGGCATGG+AGG | + | chr2_3:60077754-60077773 | None:intergenic | 50.0% |
| TGTAAATCCTTCGGCAGCCA+AGG | - | chr2_3:60077783-60077802 | Msa0303040:intron | 50.0% | |
| !! | CTTGGTGTCCTAGTGTTGGT+AGG | - | chr2_3:60077854-60077873 | Msa0303040:intron | 50.0% |
| ! | GGTGGTTTTCCACCTCCATC+AGG | - | chr2_3:60074597-60074616 | Msa0303040:CDS | 55.0% |
| GGATAACGTCCTGATGGAGG+TGG | + | chr2_3:60074609-60074628 | None:intergenic | 55.0% | |
| CCTCCATCAGGACGTTATCC+GGG | - | chr2_3:60074609-60074628 | Msa0303040:CDS | 55.0% | |
| ! | AGTGACCTCGGTGTAGTTGG+TGG | - | chr2_3:60074834-60074853 | Msa0303040:intron | 55.0% |
| !! | GGTGTAGTTGGTGGTGCTGA+TGG | - | chr2_3:60074843-60074862 | Msa0303040:intron | 55.0% |
| GTCTAATGCTGCCGGAGCAT+CGG | - | chr2_3:60074971-60074990 | Msa0303040:intron | 55.0% | |
| ! | TCTAATGCTGCCGGAGCATC+GGG | - | chr2_3:60074972-60074991 | Msa0303040:intron | 55.0% |
| ATCGGGTTTGGCGCCAATGT+CGG | - | chr2_3:60074989-60075008 | Msa0303040:intron | 55.0% | |
| GTTTGGCGCCAATGTCGGTA+GGG | - | chr2_3:60074994-60075013 | Msa0303040:intron | 55.0% | |
| GATGTCTGCCCTACCGACAT+TGG | + | chr2_3:60075005-60075024 | None:intergenic | 55.0% | |
| ATGTCGGTAGGGCAGACATC+AGG | - | chr2_3:60075005-60075024 | Msa0303040:intron | 55.0% | |
| !! | TCAGGAGGAGGTACCTCTTC+TGG | - | chr2_3:60075023-60075042 | Msa0303040:intron | 55.0% |
| !! | CAGGAGGAGGTACCTCTTCT+GGG | - | chr2_3:60075024-60075043 | Msa0303040:intron | 55.0% |
| !! | AGGAGGAGGTACCTCTTCTG+GGG | - | chr2_3:60075025-60075044 | Msa0303040:intron | 55.0% |
| ! | GCTGTGCTGGTGTCTGATTC+TGG | + | chr2_3:60075084-60075103 | None:intergenic | 55.0% |
| AGCACAGCCAGTCCATGGAT+GGG | - | chr2_3:60075096-60075115 | Msa0303040:intron | 55.0% | |
| TGCACGCTTGGGGTCAATCA+AGG | + | chr2_3:60075222-60075241 | None:intergenic | 55.0% | |
| GACCGAGTGGAATACACGTC+AGG | + | chr2_3:60075463-60075482 | None:intergenic | 55.0% | |
| GGGAAGGGTTGGACCCATTA+TGG | + | chr2_3:60076160-60076179 | None:intergenic | 55.0% | |
| TACCTGCTGCAGTGTGGGAA+GGG | + | chr2_3:60076397-60076416 | None:intergenic | 55.0% | |
| ATACCTGCTGCAGTGTGGGA+AGG | + | chr2_3:60076398-60076417 | None:intergenic | 55.0% | |
| CAAATAGGCAGTCTGCGGCA+AGG | - | chr2_3:60076672-60076691 | Msa0303040:intron | 55.0% | |
| GAAGCTGCGGTTGCAAACCA+TGG | - | chr2_3:60076957-60076976 | Msa0303040:CDS | 55.0% | |
| CAAGCTATGCCGCCAAATGG+AGG | - | chr2_3:60077469-60077488 | Msa0303040:CDS | 55.0% | |
| ACAAATGCAGCAGCAGCAGC+AGG | - | chr2_3:60077681-60077700 | Msa0303040:intron | 55.0% | |
| CAACAATCCTTGGCTGCCGA+AGG | + | chr2_3:60077793-60077812 | None:intergenic | 55.0% | |
| GGCTGCAACCTACCAACACT+AGG | + | chr2_3:60077865-60077884 | None:intergenic | 55.0% | |
| CTTTGCGCCGCGTAGATCAG+GGG | + | chr2_3:60074284-60074303 | None:intergenic | 60.0% | |
| CCTTTGCGCCGCGTAGATCA+GGG | + | chr2_3:60074285-60074304 | None:intergenic | 60.0% | |
| ACCTTTGCGCCGCGTAGATC+AGG | + | chr2_3:60074286-60074305 | None:intergenic | 60.0% | |
| CCCGGATAACGTCCTGATGG+AGG | + | chr2_3:60074612-60074631 | None:intergenic | 60.0% | |
| ! | GGCGGATACGACGATGATGG+GGG | + | chr2_3:60074675-60074694 | None:intergenic | 60.0% |
| CGGCGGATACGACGATGATG+GGG | + | chr2_3:60074676-60074695 | None:intergenic | 60.0% | |
| GCGGCGGATACGACGATGAT+GGG | + | chr2_3:60074677-60074696 | None:intergenic | 60.0% | |
| AGCGGCGGATACGACGATGA+TGG | + | chr2_3:60074678-60074697 | None:intergenic | 60.0% | |
| ! | GAGCTGGTTCCAGGAGCAAG+CGG | + | chr2_3:60074696-60074715 | None:intergenic | 60.0% |
| CAGCACCACCAACTACACCG+AGG | + | chr2_3:60074842-60074861 | None:intergenic | 60.0% | |
| GGTGAGGGGTCTAATGCTGC+CGG | - | chr2_3:60074963-60074982 | Msa0303040:intron | 60.0% | |
| GGTTTGGCGCCAATGTCGGT+AGG | - | chr2_3:60074993-60075012 | Msa0303040:intron | 60.0% | |
| TCGGTAGGGCAGACATCAGG+AGG | - | chr2_3:60075008-60075027 | Msa0303040:intron | 60.0% | |
| GTAGGGCAGACATCAGGAGG+AGG | - | chr2_3:60075011-60075030 | Msa0303040:intron | 60.0% | |
| ACACCAGCACAGCCAGTCCA+TGG | - | chr2_3:60075091-60075110 | Msa0303040:intron | 60.0% | |
| !! | CATCCATGGACTGGCTGTGC+TGG | + | chr2_3:60075097-60075116 | None:intergenic | 60.0% |
| CAGCACAGCCAGTCCATGGA+TGG | - | chr2_3:60075095-60075114 | Msa0303040:intron | 60.0% | |
| ATCCCTTCCCACACTGCAGC+AGG | - | chr2_3:60076392-60076411 | Msa0303040:intron | 60.0% | |
| GGGCAAGCTATGCCGCCAAA+TGG | - | chr2_3:60077466-60077485 | Msa0303040:CDS | 60.0% | |
| CCCTGATCTACGCGGCGCAA+AGG | - | chr2_3:60074282-60074301 | Msa0303040:three_prime_UTR | 65.0% | |
| TCGTATCCGCCGCTTGCTCC+TGG | - | chr2_3:60074684-60074703 | Msa0303040:CDS | 65.0% | |
| CTGGTTCCAGGAGCAAGCGG+CGG | + | chr2_3:60074693-60074712 | None:intergenic | 65.0% | |
| !! | TGCTGCCGGAGCATCGGGTT+TGG | - | chr2_3:60074977-60074996 | Msa0303040:intron | 65.0% |
| TGGCGCCAAACCCGATGCTC+CGG | + | chr2_3:60074985-60075004 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 60074099 | 60078089 | 60074099 | ID=Msa0303040;Name=Msa0303040 |
| chr2_3 | mRNA | 60074099 | 60078089 | 60074099 | ID=Msa0303040-mRNA-1;Parent=Msa0303040;Name=Msa0303040-mRNA-1;_AED=0.08;_eAED=0.08;_QI=254|1|1|1|0.6|0.5|6|276|431 |
| chr2_3 | exon | 60074099 | 60074772 | 60074099 | ID=Msa0303040-mRNA-1:exon:19549;Parent=Msa0303040-mRNA-1 |
| chr2_3 | exon | 60075185 | 60075269 | 60075185 | ID=Msa0303040-mRNA-1:exon:19548;Parent=Msa0303040-mRNA-1 |
| chr2_3 | exon | 60075392 | 60075524 | 60075392 | ID=Msa0303040-mRNA-1:exon:19547;Parent=Msa0303040-mRNA-1 |
| chr2_3 | exon | 60076942 | 60077691 | 60076942 | ID=Msa0303040-mRNA-1:exon:19546;Parent=Msa0303040-mRNA-1 |
| chr2_3 | exon | 60077885 | 60077993 | 60077885 | ID=Msa0303040-mRNA-1:exon:19545;Parent=Msa0303040-mRNA-1 |
| chr2_3 | exon | 60078015 | 60078089 | 60078015 | ID=Msa0303040-mRNA-1:exon:19544;Parent=Msa0303040-mRNA-1 |
| chr2_3 | five_prime_UTR | 60078015 | 60078089 | 60078015 | ID=Msa0303040-mRNA-1:five_prime_utr;Parent=Msa0303040-mRNA-1 |
| chr2_3 | five_prime_UTR | 60077885 | 60077993 | 60077885 | ID=Msa0303040-mRNA-1:five_prime_utr;Parent=Msa0303040-mRNA-1 |
| chr2_3 | five_prime_UTR | 60077622 | 60077691 | 60077622 | ID=Msa0303040-mRNA-1:five_prime_utr;Parent=Msa0303040-mRNA-1 |
| chr2_3 | CDS | 60076942 | 60077621 | 60076942 | ID=Msa0303040-mRNA-1:cds;Parent=Msa0303040-mRNA-1 |
| chr2_3 | CDS | 60075392 | 60075524 | 60075392 | ID=Msa0303040-mRNA-1:cds;Parent=Msa0303040-mRNA-1 |
| chr2_3 | CDS | 60075185 | 60075269 | 60075185 | ID=Msa0303040-mRNA-1:cds;Parent=Msa0303040-mRNA-1 |
| chr2_3 | CDS | 60074375 | 60074772 | 60074375 | ID=Msa0303040-mRNA-1:cds;Parent=Msa0303040-mRNA-1 |
| chr2_3 | three_prime_UTR | 60074099 | 60074374 | 60074099 | ID=Msa0303040-mRNA-1:three_prime_utr;Parent=Msa0303040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
