AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0303040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0303040 MtrunA17_Chr2g0329551 97.912 431 7 1 1 431 1 429 0.0 862
Msa0303040 MtrunA17_Chr3g0107491 45.402 348 141 10 72 406 38 349 3.26e-66 216
Msa0303040 MtrunA17_Chr5g0432701 52.549 255 68 9 72 320 51 258 8.96e-65 212
Msa0303040 MtrunA17_Chr3g0128781 43.796 274 80 8 72 335 7 216 6.07e-51 174
Msa0303040 MtrunA17_Chr4g0036071 44.318 264 88 8 109 323 213 466 3.38e-49 174
Msa0303040 MtrunA17_Chr6g0463571 42.532 308 122 12 66 366 22 281 8.73e-48 166
Msa0303040 MtrunA17_Chr1g0156051 59.712 139 53 2 176 313 343 479 2.17e-32 129
Msa0303040 MtrunA17_Chr2g0316551 37.821 156 82 2 219 374 206 346 2.13e-20 92.0
Msa0303040 MtrunA17_Chr2g0325131 45.614 114 57 2 219 327 189 302 1.48e-19 89.4
Msa0303040 MtrunA17_Chr4g0040891 46.000 100 54 0 219 318 192 291 8.30e-19 87.0
Msa0303040 MtrunA17_Chr1g0202051 36.697 109 69 0 206 314 109 217 2.65e-13 70.1
Msa0303040 MtrunA17_Chr8g0380611 27.341 267 158 6 58 313 80 321 2.66e-12 68.2
Msa0303040 MtrunA17_Chr2g0306581 63.265 49 18 0 209 257 1 49 2.93e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0303040 AT1G06070.1 73.810 336 69 6 19 352 21 339 3.64e-168 479
Msa0303040 AT2G31370.5 66.301 365 92 10 1 361 1 338 6.84e-152 436
Msa0303040 AT2G31370.2 66.301 365 92 10 1 361 1 338 2.05e-151 435
Msa0303040 AT2G31370.4 66.301 365 92 10 1 361 1 338 2.05e-151 435
Msa0303040 AT2G31370.1 66.301 365 92 10 1 361 1 338 2.05e-151 435
Msa0303040 AT2G31370.7 66.301 365 92 10 1 361 1 338 2.05e-151 435
Msa0303040 AT2G31370.3 66.301 365 92 10 1 361 1 338 2.05e-151 435
Msa0303040 AT2G31370.6 66.301 365 92 10 1 361 1 338 2.05e-151 435
Msa0303040 AT2G40620.1 49.231 260 95 7 66 324 28 251 2.15e-61 203
Msa0303040 AT1G43700.1 49.746 197 90 3 161 348 129 325 2.14e-49 171
Msa0303040 AT1G06850.1 52.459 183 61 2 204 360 131 313 4.19e-48 167
Msa0303040 AT4G38900.2 67.769 121 39 0 199 319 372 492 1.22e-45 166
Msa0303040 AT4G38900.3 67.769 121 39 0 199 319 372 492 1.22e-45 166
Msa0303040 AT4G38900.1 41.328 271 99 7 109 319 228 498 3.54e-43 159
Msa0303040 AT2G21230.4 63.415 123 45 0 196 318 345 467 1.31e-42 157
Msa0303040 AT2G21230.1 63.415 123 45 0 196 318 345 467 1.31e-42 157
Msa0303040 AT2G21230.3 59.690 129 46 1 196 318 345 473 1.39e-39 149
Msa0303040 AT2G21230.2 65.421 107 37 0 196 302 345 451 6.78e-37 140
Msa0303040 AT1G06850.2 76.712 73 17 0 204 276 131 203 8.33e-27 107
Msa0303040 AT2G42380.2 47.000 100 53 0 219 318 184 283 5.76e-20 90.5
Msa0303040 AT3G58120.1 47.959 98 51 0 221 318 202 299 1.01e-19 90.1
Msa0303040 AT2G12900.1 34.109 129 77 1 196 316 83 211 1.37e-18 85.5
Msa0303040 AT2G42380.5 47.619 84 44 0 219 302 184 267 3.48e-17 81.6
Msa0303040 AT3G58120.2 49.367 79 40 0 221 299 202 280 4.64e-16 78.6
Msa0303040 AT2G13150.1 37.615 109 67 1 207 315 136 243 6.18e-16 77.8
Msa0303040 AT2G12940.1 34.188 117 76 1 197 313 125 240 3.02e-15 76.3
Msa0303040 AT2G42380.1 42.000 100 47 1 219 318 184 272 1.29e-13 71.6
Msa0303040 AT2G21235.1 43.678 87 49 0 221 307 359 445 3.34e-13 72.0
Msa0303040 AT1G58110.1 41.860 86 50 0 230 315 238 323 1.21e-11 66.2
Msa0303040 AT1G58110.2 41.860 86 50 0 230 315 238 323 1.21e-11 66.2
Msa0303040 AT2G42380.3 60.000 45 18 0 219 263 184 228 7.67e-11 62.4
Msa0303040 AT2G42380.4 60.000 45 18 0 219 263 184 228 7.67e-11 62.4

Find 150 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGTGCTGGTGTCTGATTC+TGG 0.087788 2_3:+60077085 None:intergenic
TCCCCTTTCTCTCTATTTCT+AGG 0.178092 2_3:-60077935 Msa0303040:five_prime_UTR
CCTATGAACTTTAATTCTTT+TGG 0.197858 2_3:-60074673 Msa0303040:CDS
TTCTTGGCATCTCAGTTAAT+TGG 0.220227 2_3:-60074190 Msa0303040:three_prime_UTR
GTGATTGCTTAGTGTTGTTT+AGG 0.228415 2_3:-60077637 Msa0303040:five_prime_UTR
GCTGTTTCTGAGGATGAATT+TGG 0.240472 2_3:+60074575 None:intergenic
TGAAGTGATTGAACTGGATT+AGG 0.244656 2_3:-60077664 Msa0303040:five_prime_UTR
ATCTGATGAAGGATTATCTT+TGG 0.251730 2_3:+60074405 None:intergenic
CCATGCCATGCACACTCTTT+TGG 0.268695 2_3:-60074620 Msa0303040:CDS
TGTATAATACTAAAATTTCT+TGG 0.277005 2_3:-60074206 Msa0303040:three_prime_UTR
GTGCATGGCATGGTTATTAT+TGG 0.277488 2_3:+60074630 None:intergenic
TCAGGAGGAGGTACCTCTTC+TGG 0.279881 2_3:-60077143 Msa0303040:CDS
CTAGAATCTGAGCTGGTTCC+AGG 0.284646 2_3:+60077464 None:intergenic
TTCCGAGATTCTTACCTTGC+CGG 0.302193 2_3:-60077372 Msa0303040:CDS
ACCTTTGCGCCGCGTAGATC+AGG 0.306683 2_3:+60077883 None:intergenic
ACCTCCATCAGGACGTTATC+CGG 0.323576 2_3:-60077558 Msa0303040:CDS
TACCTCTTCTGGGGAAAATA+TGG 0.331870 2_3:-60077132 Msa0303040:CDS
TGATTGCTTAGTGTTGTTTA+GGG 0.334346 2_3:-60077636 Msa0303040:five_prime_UTR
TCTGATGAAGGATTATCTTT+GGG 0.340833 2_3:+60074406 None:intergenic
CTGTGCTGGTGTCTGATTCT+GGG 0.348924 2_3:+60077086 None:intergenic
ACAAATGCAGCAGCAGCAGC+AGG 0.359774 2_3:-60074485 Msa0303040:CDS
GAAGTGATTGAACTGGATTA+GGG 0.360372 2_3:-60077663 Msa0303040:five_prime_UTR
TTTGTTGCTGCTGTATTTGT+TGG 0.370991 2_3:+60074518 None:intergenic
TGCACAGTTAACTCTCTTAC+AGG 0.371836 2_3:-60075391 Msa0303040:intron
TTGTTGATTGAGATGGTATA+GGG 0.373709 2_3:-60074110 Msa0303040:three_prime_UTR
CCCCTTTCTCTCTATTTCTA+GGG 0.376649 2_3:-60077934 Msa0303040:five_prime_UTR
CAGGAGGAGGTACCTCTTCT+GGG 0.381898 2_3:-60077142 Msa0303040:CDS
GTTGTCCATGTACCTTGATA+TGG 0.382193 2_3:-60077267 Msa0303040:CDS
CGCAGTTTCTCAACAATCCT+TGG 0.383849 2_3:+60074366 None:intergenic
TCGTATCCGCCGCTTGCTCC+TGG 0.385842 2_3:-60077482 Msa0303040:CDS
TTTGTTGATTGAGATGGTAT+AGG 0.386419 2_3:-60074111 Msa0303040:three_prime_UTR
GTCTAATGCTGCCGGAGCAT+CGG 0.391354 2_3:-60077195 Msa0303040:CDS
TGCTGCCGGAGCATCGGGTT+TGG 0.393129 2_3:-60077189 Msa0303040:CDS
CGGAATGAAGAGAGAGAAAG+TGG 0.396602 2_3:+60077967 None:intergenic
CATCCATGGACTGGCTGTGC+TGG 0.409055 2_3:+60077072 None:intergenic
GGAGCAACAAGTTCACTTGC+AGG 0.420631 2_3:-60075188 Msa0303040:CDS
TCTAATGCTGCCGGAGCATC+GGG 0.422071 2_3:-60077194 Msa0303040:CDS
AATGGAAAAGGACAAATCAT+TGG 0.426956 2_3:-60077600 Msa0303040:CDS
TTGACCCCAAGCGTGCAAAA+AGG 0.430308 2_3:-60076941 Msa0303040:intron
CAAGGCAAGTTCTGCAAGCT+TGG 0.432209 2_3:+60076965 None:intergenic
AACCCTAGAAATAGAGAGAA+AGG 0.437708 2_3:+60077932 None:intergenic
TGCACGCTTGGGGTCAATCA+AGG 0.439782 2_3:+60076947 None:intergenic
GTTTGATTCGTTGACGAGAA+TGG 0.440805 2_3:-60078061 Msa0303040:five_prime_UTR
GAGAAAGGGGAAATGAATAT+CGG 0.452502 2_3:+60077947 None:intergenic
TTTAAATGACGCGTTAAAAG+AGG 0.453730 2_3:-60074749 Msa0303040:CDS
CTTAGTGTTGTTTAGGGTCA+AGG 0.453918 2_3:-60077630 Msa0303040:five_prime_UTR
TATCCGGGTTATTCACCAAC+TGG 0.455335 2_3:-60077542 Msa0303040:CDS
GTAACAGGATATGGGCAAAT+AGG 0.455791 2_3:-60075509 Msa0303040:intron
CAAGTGAACTTGTTGCTCCA+TGG 0.458049 2_3:+60075192 None:intergenic
TGCATGGCATGGTTATTATT+GGG 0.461227 2_3:+60074631 None:intergenic
ATTTGTGTGTAACAGGATAT+GGG 0.465089 2_3:-60075517 Msa0303040:intron
GTTTACTTTGTTGATTGAGA+TGG 0.465856 2_3:-60074117 Msa0303040:three_prime_UTR
GGCTATGAATATATCAATGT+AGG 0.467004 2_3:-60074169 Msa0303040:three_prime_UTR
TGGCGCCAAACCCGATGCTC+CGG 0.468192 2_3:+60077184 None:intergenic
GTAGATCAGGGGAGATAGAT+TGG 0.469223 2_3:+60077896 None:intergenic
AAATCATTGGGTCTTGGCGG+TGG 0.469321 2_3:-60077587 Msa0303040:CDS
CAAACCTGAGATGTTAATCT+CGG 0.472947 2_3:-60077036 Msa0303040:CDS
TTCATCAGATGTAAATCCTT+CGG 0.478143 2_3:-60074392 Msa0303040:CDS
AAGTTCATAGGTCCTCCATT+TGG 0.480765 2_3:+60074685 None:intergenic
CCAAAAGAATTAAAGTTCAT+AGG 0.483391 2_3:+60074673 None:intergenic
CGTCTATGACCTCTATTTCT+CGG 0.485976 2_3:+60077401 None:intergenic
CCTTTGCGCCGCGTAGATCA+GGG 0.489306 2_3:+60077884 None:intergenic
GCGGCGGATACGACGATGAT+GGG 0.489367 2_3:+60077492 None:intergenic
GGTTATTCACCAACTGGAAG+TGG 0.489501 2_3:-60077536 Msa0303040:CDS
AAGGACAAATCATTGGGTCT+TGG 0.496632 2_3:-60077593 Msa0303040:CDS
CAAGGAATCGTGAATGGAAA+AGG 0.498524 2_3:-60077612 Msa0303040:exon
GGGCAAGCTATGCCGCCAAA+TGG 0.498892 2_3:-60074700 Msa0303040:CDS
ACCCTAGAAATAGAGAGAAA+GGG 0.501328 2_3:+60077933 None:intergenic
GGTGTAGTTGGTGGTGCTGA+TGG 0.502800 2_3:-60077323 Msa0303040:CDS
CTTGGTGTCCTAGTGTTGGT+AGG 0.502821 2_3:-60074312 Msa0303040:three_prime_UTR
GACAAATCATTGGGTCTTGG+CGG 0.504559 2_3:-60077590 Msa0303040:CDS
GAAGGATTTACATCTGATGA+AGG 0.504672 2_3:+60074394 None:intergenic
CGCATTTGAAAGTACTGACT+GGG 0.505823 2_3:-60074720 Msa0303040:CDS
ATGGAAAAGGACAAATCATT+GGG 0.507816 2_3:-60077599 Msa0303040:CDS
GATAGTGACCTCGGTGTAGT+TGG 0.507851 2_3:-60077335 Msa0303040:CDS
AGCGGCGGATACGACGATGA+TGG 0.508995 2_3:+60077491 None:intergenic
TTCATAGGTCCTCCATTTGG+CGG 0.509377 2_3:+60074688 None:intergenic
CAGCACAGCCAGTCCATGGA+TGG 0.510016 2_3:-60077071 Msa0303040:CDS
CAACAATCCTTGGCTGCCGA+AGG 0.516507 2_3:+60074376 None:intergenic
CTATCAAAGCTAATATCATC+CGG 0.517208 2_3:+60077353 None:intergenic
GATTGTTGTTGACCCATCCA+TGG 0.518412 2_3:+60077058 None:intergenic
TATAGGAAGGGCAGTTGCTA+AGG 0.518572 2_3:+60074084 None:intergenic
CTTATCCATATCAAGGTACA+TGG 0.520173 2_3:+60077262 None:intergenic
ATGTCGGTAGGGCAGACATC+AGG 0.524354 2_3:-60077161 Msa0303040:CDS
GCTATATTGCTGAGCTTGAA+AGG 0.525278 2_3:-60075452 Msa0303040:CDS
CCTCCATCAGGACGTTATCC+GGG 0.528655 2_3:-60077557 Msa0303040:CDS
ATCGGGTTTGGCGCCAATGT+CGG 0.530842 2_3:-60077177 Msa0303040:CDS
GGTTTGGCGCCAATGTCGGT+AGG 0.535811 2_3:-60077173 Msa0303040:CDS
GATGTCTGCCCTACCGACAT+TGG 0.538923 2_3:+60077164 None:intergenic
TAGGGTCAAGGAATCGTGAA+TGG 0.539205 2_3:-60077618 Msa0303040:exon
ATCCGGCAAGGTAAGAATCT+CGG 0.540794 2_3:+60077370 None:intergenic
CTGCGGCAAGGTCAAAAGAA+AGG 0.542300 2_3:-60075482 Msa0303040:CDS
CATGGACAACAAATCTTCCT+CGG 0.543636 2_3:+60077280 None:intergenic
CCCTGATCTACGCGGCGCAA+AGG 0.544257 2_3:-60077884 Msa0303040:intron
GAAGGATTATCTTTGGGGCA+TGG 0.547961 2_3:+60074412 None:intergenic
AATTGAACTTATCCATATCA+AGG 0.549561 2_3:+60077255 None:intergenic
TGTAAATCCTTCGGCAGCCA+AGG 0.553319 2_3:-60074383 Msa0303040:CDS
GCTATGAATATATCAATGTA+GGG 0.556993 2_3:-60074168 Msa0303040:three_prime_UTR
GAACCCGAGATTAACATCTC+AGG 0.557523 2_3:+60077032 None:intergenic
ACGCATTTGAAAGTACTGAC+TGG 0.558522 2_3:-60074721 Msa0303040:CDS
TTGTCTTGGTGTCCTAGTGT+TGG 0.558889 2_3:-60074316 Msa0303040:three_prime_UTR
ACACCAGCACAGCCAGTCCA+TGG 0.559692 2_3:-60077075 Msa0303040:CDS
CCCTAGAAATAGAGAGAAAG+GGG 0.561303 2_3:+60077934 None:intergenic
GGTGAGGGGTCTAATGCTGC+CGG 0.563134 2_3:-60077203 Msa0303040:CDS
TTGTTGACCCATCCATGGAC+TGG 0.565600 2_3:+60077063 None:intergenic
GAAAGTGCAGACATTGCAAA+CGG 0.566063 2_3:-60075430 Msa0303040:CDS
AAACCTGAGATGTTAATCTC+GGG 0.567313 2_3:-60077035 Msa0303040:CDS
GATAATCCTCCGAGAAATAG+AGG 0.571302 2_3:-60077410 Msa0303040:CDS
TGATGTTGCTGCTGTTTCTG+AGG 0.574585 2_3:+60074565 None:intergenic
CAAGCTATGCCGCCAAATGG+AGG 0.574883 2_3:-60074697 Msa0303040:CDS
CTGATGAAGGATTATCTTTG+GGG 0.574967 2_3:+60074407 None:intergenic
CGGCGGATACGACGATGATG+GGG 0.587072 2_3:+60077493 None:intergenic
AAAGCCACTAGAATCTGAGC+TGG 0.591242 2_3:+60077457 None:intergenic
CCAAAAGAGTGTGCATGGCA+TGG 0.592655 2_3:+60074620 None:intergenic
CTTCCAGTTGGTGAATAACC+CGG 0.596092 2_3:+60077539 None:intergenic
GGATAACGTCCTGATGGAGG+TGG 0.599011 2_3:+60077560 None:intergenic
ATTAGCTTTGATAGTGACCT+CGG 0.599687 2_3:-60077344 Msa0303040:CDS
ACATTGAAACCACTTCCAGT+TGG 0.606876 2_3:+60077527 None:intergenic
TGCAGCCAAAAGAGTGTGCA+TGG 0.611169 2_3:+60074615 None:intergenic
AGTGACCTCGGTGTAGTTGG+TGG 0.612819 2_3:-60077332 Msa0303040:CDS
GTTTGGCGCCAATGTCGGTA+GGG 0.616468 2_3:-60077172 Msa0303040:CDS
AGCACAGCCAGTCCATGGAT+GGG 0.619422 2_3:-60077070 Msa0303040:CDS
GAGCTGGTTCCAGGAGCAAG+CGG 0.619940 2_3:+60077473 None:intergenic
GAAGCTGCGGTTGCAAACCA+TGG 0.620439 2_3:-60075209 Msa0303040:CDS
CAACAAGTTCACTTGCAGGA+TGG 0.622286 2_3:-60075184 Msa0303040:intron
TAACCCGGATAACGTCCTGA+TGG 0.622648 2_3:+60077554 None:intergenic
CTGGTTCCAGGAGCAAGCGG+CGG 0.624878 2_3:+60077476 None:intergenic
AAAGCTAATATCATCCGGCA+AGG 0.625947 2_3:+60077358 None:intergenic
CAAATAGGCAGTCTGCGGCA+AGG 0.630192 2_3:-60075494 Msa0303040:CDS
TCTGGGGAAAATATGGCAGT+CGG 0.630934 2_3:-60077125 Msa0303040:CDS
CCCGGATAACGTCCTGATGG+AGG 0.636399 2_3:+60077557 None:intergenic
TCGGTAGGGCAGACATCAGG+AGG 0.636796 2_3:-60077158 Msa0303040:CDS
GGCTGCAACCTACCAACACT+AGG 0.637292 2_3:+60074304 None:intergenic
CAGTCGGTACTACAAATGAA+AGG 0.639281 2_3:-60077109 Msa0303040:CDS
CTTTGCGCCGCGTAGATCAG+GGG 0.647338 2_3:+60077885 None:intergenic
GGAACCAGCTCAGATTCTAG+TGG 0.650014 2_3:-60077461 Msa0303040:CDS
GGATTATCTTTGGGGCATGG+AGG 0.651440 2_3:+60074415 None:intergenic
AGGAGGAGGTACCTCTTCTG+GGG 0.666286 2_3:-60077141 Msa0303040:CDS
ATGAACAGAGAGATACAAGT+GGG 0.666459 2_3:-60075255 Msa0303040:intron
GTAGGGCAGACATCAGGAGG+AGG 0.666831 2_3:-60077155 Msa0303040:CDS
AAGTGATTGAACTGGATTAG+GGG 0.672133 2_3:-60077662 Msa0303040:five_prime_UTR
CTATGACCTCTATTTCTCGG+AGG 0.675680 2_3:+60077404 None:intergenic
ATGGGCAAATAGGCAGTCTG+CGG 0.682103 2_3:-60075499 Msa0303040:CDS
AGAACAGTGAGCTGAAGCTG+CGG 0.689015 2_3:-60075222 Msa0303040:CDS
GTCGTTCTCTGATGATACCG+AGG 0.690738 2_3:-60077297 Msa0303040:CDS
TATGAACAGAGAGATACAAG+TGG 0.694542 2_3:-60075256 Msa0303040:intron
GGCGGATACGACGATGATGG+GGG 0.706397 2_3:+60077494 None:intergenic
TCTATCTCCCCTGATCTACG+CGG 0.750401 2_3:-60077892 Msa0303040:five_prime_UTR
TCGGTATCATCAGAGAACGA+CGG 0.752661 2_3:+60077299 None:intergenic
CAGCACCACCAACTACACCG+AGG 0.826194 2_3:+60077327 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTATTAATTTGTTACT+AGG - chr2_3:60074475-60074494 Msa0303040:CDS 10.0%
!!! TTATTATTAATTTGTTACTA+GGG - chr2_3:60074476-60074495 Msa0303040:CDS 10.0%
!! AAAATAACTAAGAAACATTA+TGG + chr2_3:60075279-60075298 None:intergenic 15.0%
!! ACAGAATAATATATAACATT+TGG + chr2_3:60075351-60075370 None:intergenic 15.0%
!!! TCAAATTTTAGAAAATGTAT+TGG - chr2_3:60075661-60075680 Msa0303040:intron 15.0%
!!! CAAATTTTAGAAAATGTATT+GGG - chr2_3:60075662-60075681 Msa0303040:intron 15.0%
!!! TATTGTATACTTTATTTTTG+TGG - chr2_3:60075902-60075921 Msa0303040:intron 15.0%
!!! AAAATTGTAAGATTTTTCTA+AGG - chr2_3:60075978-60075997 Msa0303040:intron 15.0%
!!! TTATTTTCTAAAACTGTTTT+TGG - chr2_3:60076327-60076346 Msa0303040:intron 15.0%
!!! TATTTTCTAAAACTGTTTTT+GGG - chr2_3:60076328-60076347 Msa0303040:intron 15.0%
!!! AGGACTATATTAATATTTTT+TGG - chr2_3:60076882-60076901 Msa0303040:intron 15.0%
!! AGTATTTATTTAATGCAATA+TGG - chr2_3:60077096-60077115 Msa0303040:CDS 15.0%
!! GACAAATATATTAATCTATT+GGG + chr2_3:60077178-60077197 None:intergenic 15.0%
!! AGACAAATATATTAATCTAT+TGG + chr2_3:60077179-60077198 None:intergenic 15.0%
!! TAGATTAATATATTTGTCTT+AGG - chr2_3:60077180-60077199 Msa0303040:CDS 15.0%
!! TAAGAATAAAAAATAGAACA+AGG + chr2_3:60077886-60077905 None:intergenic 15.0%
!! TGTATAATACTAAAATTTCT+TGG - chr2_3:60077960-60077979 Msa0303040:five_prime_UTR 15.0%
!! AGATAACAAAAGAGAAAAAT+TGG + chr2_3:60074381-60074400 None:intergenic 20.0%
!! TAATCTAGCATTCATAAATT+AGG - chr2_3:60075384-60075403 Msa0303040:intron 20.0%
!! AAACATGTTTATAAGCTATA+TGG + chr2_3:60075613-60075632 None:intergenic 20.0%
!! TTGTGTTTATTAATTTCAAC+AGG + chr2_3:60075801-60075820 None:intergenic 20.0%
!! TGAAATTAATAAACACAACA+AGG - chr2_3:60075803-60075822 Msa0303040:intron 20.0%
!!! ACAAAAATATAGTGTTATTG+TGG + chr2_3:60075845-60075864 None:intergenic 20.0%
!!! ACAATAACACTATATTTTTG+TGG - chr2_3:60075844-60075863 Msa0303040:intron 20.0%
!!! ATACAAAATATTGTAGGTTT+TGG - chr2_3:60075926-60075945 Msa0303040:intron 20.0%
!! TTCCAAAAAATCTCATTATT+GGG - chr2_3:60076362-60076381 Msa0303040:intron 20.0%
! GTTGAAAATTGAAATGATGA+AGG + chr2_3:60074322-60074341 None:intergenic 25.0%
!! AATGAGCTAGTTTAAGAAAT+TGG - chr2_3:60074409-60074428 Msa0303040:CDS 25.0%
!! ATGAGCTAGTTTAAGAAATT+GGG - chr2_3:60074410-60074429 Msa0303040:CDS 25.0%
! AATTGAACTTATCCATATCA+AGG + chr2_3:60074914-60074933 None:intergenic 25.0%
! TTTCTCTTTCACTATCATTT+CGG - chr2_3:60075558-60075577 Msa0303040:intron 25.0%
! ATGAGAAAAAATCTCAGAAA+TGG - chr2_3:60075727-60075746 Msa0303040:intron 25.0%
!! GGTACTTTTGTATTATACAT+AGG + chr2_3:60075776-60075795 None:intergenic 25.0%
! GTTTATTAATTTCAACAGGA+AGG + chr2_3:60075797-60075816 None:intergenic 25.0%
! TTCAAATACTACCAAAACAA+TGG + chr2_3:60076301-60076320 None:intergenic 25.0%
! CTTCCAAAAAATCTCATTAT+TGG - chr2_3:60076361-60076380 Msa0303040:intron 25.0%
! TGCAATAGATAAAGCAAAAT+AGG + chr2_3:60076528-60076547 None:intergenic 25.0%
!! TTTTCTTTCTATCTCTTTTG+TGG - chr2_3:60076584-60076603 Msa0303040:intron 25.0%
! AGGAAACATTTATAATGTTG+TGG + chr2_3:60077013-60077032 None:intergenic 25.0%
! TATCCTTGCAATTTACAATA+TGG - chr2_3:60077130-60077149 Msa0303040:CDS 25.0%
! ATACCATATTGTAAATTGCA+AGG + chr2_3:60077136-60077155 None:intergenic 25.0%
! AATATATTTGTCTTAGGTGA+AGG - chr2_3:60077186-60077205 Msa0303040:CDS 25.0%
! CCAAAAGAATTAAAGTTCAT+AGG + chr2_3:60077496-60077515 None:intergenic 25.0%
!! CCTATGAACTTTAATTCTTT+TGG - chr2_3:60077493-60077512 Msa0303040:CDS 25.0%
!! ATGAACTTTAATTCTTTTGG+AGG - chr2_3:60077496-60077515 Msa0303040:CDS 25.0%
!! CTTTTTAGATTTCATTGTCT+TGG - chr2_3:60077836-60077855 Msa0303040:intron 25.0%
! GCTATGAATATATCAATGTA+GGG - chr2_3:60077998-60078017 Msa0303040:intron 25.0%
!! GATTTTGTCAAATCTACAAT+AGG - chr2_3:60078023-60078042 Msa0303040:five_prime_UTR 25.0%
!! TGATTGCTTAGTGTTGTTTA+GGG - chr2_3:60074530-60074549 Msa0303040:CDS 30.0%
AATGGAAAAGGACAAATCAT+TGG - chr2_3:60074566-60074585 Msa0303040:CDS 30.0%
ATGGAAAAGGACAAATCATT+GGG - chr2_3:60074567-60074586 Msa0303040:CDS 30.0%
CTATCAAAGCTAATATCATC+CGG + chr2_3:60074816-60074835 None:intergenic 30.0%
! AGCAACGTCTAATTTTCAAA+TGG - chr2_3:60074941-60074960 Msa0303040:intron 30.0%
! GCAACGTCTAATTTTCAAAT+GGG - chr2_3:60074942-60074961 Msa0303040:intron 30.0%
! TCTAATTTTCAAATGGGTGA+GGG - chr2_3:60074948-60074967 Msa0303040:intron 30.0%
!!! TGACATTGCTTTTTTGGAAT+CGG + chr2_3:60075177-60075196 None:intergenic 30.0%
TTCTCTTTCACTATCATTTC+GGG - chr2_3:60075559-60075578 Msa0303040:intron 30.0%
! TTCGGGATAATTTTATTCAC+TGG - chr2_3:60075576-60075595 Msa0303040:intron 30.0%
CATGTTTAGCAAAACTATTG+AGG - chr2_3:60075626-60075645 Msa0303040:intron 30.0%
! TGTTATTGTGGTTCATGTTT+TGG + chr2_3:60075833-60075852 None:intergenic 30.0%
! GCAAAATATTGTAGGTTTTG+TGG - chr2_3:60075870-60075889 Msa0303040:intron 30.0%
TGTGGCATACAAAATATTGT+AGG - chr2_3:60075888-60075907 Msa0303040:intron 30.0%
GGTATACTTTGCAATTGATA+AGG - chr2_3:60075947-60075966 Msa0303040:intron 30.0%
ATACTTTGCAATTGATAAGG+AGG - chr2_3:60075950-60075969 Msa0303040:intron 30.0%
! TTGTTGTTGTTGTTGTTCTA+AGG - chr2_3:60076016-60076035 Msa0303040:intron 30.0%
ACTGAAAGAAAATGTTGGAA+TGG - chr2_3:60076042-60076061 Msa0303040:intron 30.0%
AGTTAATCTTACCTAGCATT+TGG + chr2_3:60076128-60076147 None:intergenic 30.0%
TAACTACAATAGACCCATAA+TGG - chr2_3:60076143-60076162 Msa0303040:intron 30.0%
AACTACAATAGACCCATAAT+GGG - chr2_3:60076144-60076163 Msa0303040:intron 30.0%
TACTTCCATGATAACATCTA+GGG + chr2_3:60076180-60076199 None:intergenic 30.0%
!!! GTTGCGTTTTATTTACTTGA+AGG - chr2_3:60076215-60076234 Msa0303040:intron 30.0%
AATATATGGCATTATCTCCT+GGG - chr2_3:60076502-60076521 Msa0303040:intron 30.0%
TTTGCTTTATCTATTGCACT+TGG - chr2_3:60076530-60076549 Msa0303040:intron 30.0%
! TTTCTATCTCTTTTGTGGTT+TGG - chr2_3:60076589-60076608 Msa0303040:intron 30.0%
! TTCTATCTCTTTTGTGGTTT+GGG - chr2_3:60076590-60076609 Msa0303040:intron 30.0%
TGCTTATATTTGTGTGTAAC+AGG - chr2_3:60076642-60076661 Msa0303040:intron 30.0%
TATTTGTGTGTAACAGGATA+TGG - chr2_3:60076648-60076667 Msa0303040:intron 30.0%
ATTTGTGTGTAACAGGATAT+GGG - chr2_3:60076649-60076668 Msa0303040:intron 30.0%
CTGGTTTAAAAGCTAATAGT+AGG - chr2_3:60076862-60076881 Msa0303040:intron 30.0%
AATTGCAAGGATATTACACA+CGG + chr2_3:60077123-60077142 None:intergenic 30.0%
TATAAGCTTGAGAATATCCA+AGG - chr2_3:60077322-60077341 Msa0303040:CDS 30.0%
TTTAAATGACGCGTTAAAAG+AGG - chr2_3:60077417-60077436 Msa0303040:CDS 30.0%
!! AACTTTAATTCTTTTGGAGG+AGG - chr2_3:60077499-60077518 Msa0303040:CDS 30.0%
!! ACTTTAATTCTTTTGGAGGA+GGG - chr2_3:60077500-60077519 Msa0303040:CDS 30.0%
TCTGATGAAGGATTATCTTT+GGG + chr2_3:60077763-60077782 None:intergenic 30.0%
ATCTGATGAAGGATTATCTT+TGG + chr2_3:60077764-60077783 None:intergenic 30.0%
TTCATCAGATGTAAATCCTT+CGG - chr2_3:60077774-60077793 Msa0303040:intron 30.0%
GGCTATGAATATATCAATGT+AGG - chr2_3:60077997-60078016 Msa0303040:intron 30.0%
! GTTTACTTTGTTGATTGAGA+TGG - chr2_3:60078049-60078068 Msa0303040:five_prime_UTR 30.0%
! TTTGTTGATTGAGATGGTAT+AGG - chr2_3:60078055-60078074 Msa0303040:five_prime_UTR 30.0%
! TTGTTGATTGAGATGGTATA+GGG - chr2_3:60078056-60078075 Msa0303040:five_prime_UTR 30.0%
GAGAAAGGGGAAATGAATAT+CGG + chr2_3:60074222-60074241 None:intergenic 35.0%
ACCCTAGAAATAGAGAGAAA+GGG + chr2_3:60074236-60074255 None:intergenic 35.0%
AACCCTAGAAATAGAGAGAA+AGG + chr2_3:60074237-60074256 None:intergenic 35.0%
TGAAGTGATTGAACTGGATT+AGG - chr2_3:60074502-60074521 Msa0303040:CDS 35.0%
GAAGTGATTGAACTGGATTA+GGG - chr2_3:60074503-60074522 Msa0303040:CDS 35.0%
! AAGTGATTGAACTGGATTAG+GGG - chr2_3:60074504-60074523 Msa0303040:CDS 35.0%
!! GTGATTGCTTAGTGTTGTTT+AGG - chr2_3:60074529-60074548 Msa0303040:CDS 35.0%
!! ATTAGCTTTGATAGTGACCT+CGG - chr2_3:60074822-60074841 Msa0303040:intron 35.0%
CTTATCCATATCAAGGTACA+TGG + chr2_3:60074907-60074926 None:intergenic 35.0%
! GTCTAATTTTCAAATGGGTG+AGG - chr2_3:60074947-60074966 Msa0303040:intron 35.0%
! CTAATTTTCAAATGGGTGAG+GGG - chr2_3:60074949-60074968 Msa0303040:intron 35.0%
CAAACCTGAGATGTTAATCT+CGG - chr2_3:60075130-60075149 Msa0303040:intron 35.0%
AAACCTGAGATGTTAATCTC+GGG - chr2_3:60075131-60075150 Msa0303040:intron 35.0%
! TAATACCTTTTTGCACGCTT+GGG + chr2_3:60075233-60075252 None:intergenic 35.0%
! ATAATACCTTTTTGCACGCT+TGG + chr2_3:60075234-60075253 None:intergenic 35.0%
! CATGTTGGTGAAAAAAAAGG+TGG + chr2_3:60075500-60075519 None:intergenic 35.0%
AATGACAAAACAGAGCTTTG+AGG + chr2_3:60075532-60075551 None:intergenic 35.0%
! TCAAAGCTCTGTTTTGTCAT+TGG - chr2_3:60075531-60075550 Msa0303040:intron 35.0%
TTTAGCAAAACTATTGAGGC+AGG - chr2_3:60075630-60075649 Msa0303040:intron 35.0%
!! TTTGAGACAGGATAGGATTT+TGG - chr2_3:60075687-60075706 Msa0303040:intron 35.0%
TGTGGCATGCAAAATATTGT+AGG - chr2_3:60075862-60075881 Msa0303040:intron 35.0%
!!! GATTTTTCTAAGGTCTACCA+AGG - chr2_3:60075988-60076007 Msa0303040:intron 35.0%
GGTCTACTGAAAGAAAATGT+TGG - chr2_3:60076037-60076056 Msa0303040:intron 35.0%
! GCAAATGTTTTCCAAATGCT+AGG - chr2_3:60076114-60076133 Msa0303040:intron 35.0%
CTACTTCCATGATAACATCT+AGG + chr2_3:60076181-60076200 None:intergenic 35.0%
CAAGTAAATAAAACGCAACC+TGG + chr2_3:60076214-60076233 None:intergenic 35.0%
!!! TCTAAAACTGTTTTTGGGTG+TGG - chr2_3:60076333-60076352 Msa0303040:intron 35.0%
!!! GGCCCAATAATGAGATTTTT+TGG + chr2_3:60076367-60076386 None:intergenic 35.0%
!! GGTATTGATGAAATACTGCT+CGG - chr2_3:60076413-60076432 Msa0303040:intron 35.0%
AGTTCCAGCTCATCAATATA+TGG - chr2_3:60076488-60076507 Msa0303040:intron 35.0%
AATGCCATATATTGATGAGC+TGG + chr2_3:60076495-60076514 None:intergenic 35.0%
CAATATATGGCATTATCTCC+TGG - chr2_3:60076501-60076520 Msa0303040:intron 35.0%
CCAGCAAGTGAAATAGTAAT+TGG + chr2_3:60076846-60076865 None:intergenic 35.0%
CCAATTACTATTTCACTTGC+TGG - chr2_3:60076843-60076862 Msa0303040:intron 35.0%
TATGAACAGAGAGATACAAG+TGG - chr2_3:60076910-60076929 Msa0303040:intron 35.0%
ATGAACAGAGAGATACAAGT+GGG - chr2_3:60076911-60076930 Msa0303040:intron 35.0%
!! TGGCTGCAAAATTTTGTTGT+TGG - chr2_3:60077228-60077247 Msa0303040:CDS 35.0%
!!! GGCTGCAAAATTTTGTTGTT+GGG - chr2_3:60077229-60077248 Msa0303040:CDS 35.0%
!!! GCAAAATTTTGTTGTTGGGT+TGG - chr2_3:60077233-60077252 Msa0303040:CDS 35.0%
TGCATGGCATGGTTATTATT+GGG + chr2_3:60077538-60077557 None:intergenic 35.0%
TTTGTTGCTGCTGTATTTGT+TGG + chr2_3:60077651-60077670 None:intergenic 35.0%
GAACAACAACAACAACAATC+AGG - chr2_3:60077703-60077722 Msa0303040:intron 35.0%
CTGATGAAGGATTATCTTTG+GGG + chr2_3:60077762-60077781 None:intergenic 35.0%
GAAGGATTTACATCTGATGA+AGG + chr2_3:60077775-60077794 None:intergenic 35.0%
TTCTTGGCATCTCAGTTAAT+TGG - chr2_3:60077976-60077995 Msa0303040:intron 35.0%
! GTTTGATTCGTTGACGAGAA+TGG - chr2_3:60074105-60074124 Msa0303040:three_prime_UTR 40.0%
! TCCCCTTTCTCTCTATTTCT+AGG - chr2_3:60074231-60074250 Msa0303040:three_prime_UTR 40.0%
CCCTAGAAATAGAGAGAAAG+GGG + chr2_3:60074235-60074254 None:intergenic 40.0%
!! CCCCTTTCTCTCTATTTCTA+GGG - chr2_3:60074232-60074251 Msa0303040:three_prime_UTR 40.0%
!!! GGGTTTTGAAGTGATTGAAC+TGG - chr2_3:60074496-60074515 Msa0303040:CDS 40.0%
!! CTTAGTGTTGTTTAGGGTCA+AGG - chr2_3:60074536-60074555 Msa0303040:CDS 40.0%
CAAGGAATCGTGAATGGAAA+AGG - chr2_3:60074554-60074573 Msa0303040:CDS 40.0%
AAGGACAAATCATTGGGTCT+TGG - chr2_3:60074573-60074592 Msa0303040:CDS 40.0%
ACATTGAAACCACTTCCAGT+TGG + chr2_3:60074642-60074661 None:intergenic 40.0%
GATAATCCTCCGAGAAATAG+AGG - chr2_3:60074756-60074775 Msa0303040:intron 40.0%
! CGTCTATGACCTCTATTTCT+CGG + chr2_3:60074768-60074787 None:intergenic 40.0%
AAAGCTAATATCATCCGGCA+AGG + chr2_3:60074811-60074830 None:intergenic 40.0%
CATGGACAACAAATCTTCCT+CGG + chr2_3:60074889-60074908 None:intergenic 40.0%
GTTGTCCATGTACCTTGATA+TGG - chr2_3:60074899-60074918 Msa0303040:intron 40.0%
! TACCTCTTCTGGGGAAAATA+TGG - chr2_3:60075034-60075053 Msa0303040:intron 40.0%
CAGTCGGTACTACAAATGAA+AGG - chr2_3:60075057-60075076 Msa0303040:intron 40.0%
! AATACCTTTTTGCACGCTTG+GGG + chr2_3:60075232-60075251 None:intergenic 40.0%
AGTCAATAATACAGACCGAG+TGG + chr2_3:60075476-60075495 None:intergenic 40.0%
! CGGCATGTTGGTGAAAAAAA+AGG + chr2_3:60075503-60075522 None:intergenic 40.0%
!! ACAGAGCTTTGAGGAATTCA+CGG + chr2_3:60075523-60075542 None:intergenic 40.0%
CAAAACTATTGAGGCAGGAT+AGG - chr2_3:60075635-60075654 Msa0303040:intron 40.0%
!! ATGTATTGGGTCTTTGAGAC+AGG - chr2_3:60075675-60075694 Msa0303040:intron 40.0%
CAACAACAACAACTAAGCCT+TGG + chr2_3:60076008-60076027 None:intergenic 40.0%
CCATGATAACATCTAGGGAA+GGG + chr2_3:60076175-60076194 None:intergenic 40.0%
TCCATGATAACATCTAGGGA+AGG + chr2_3:60076176-60076195 None:intergenic 40.0%
! ACACACTCACACCATTGTTT+TGG - chr2_3:60076287-60076306 Msa0303040:intron 40.0%
GAAATACTGCTCGGATAGAA+TGG - chr2_3:60076422-60076441 Msa0303040:intron 40.0%
ATAGAATGGCCTTCCTTAGA+GGG - chr2_3:60076436-60076455 Msa0303040:intron 40.0%
AGATAAAGCAAAATAGGCCC+AGG + chr2_3:60076522-60076541 None:intergenic 40.0%
TAAGCAGTGTTTGTCGATGT+TGG + chr2_3:60076628-60076647 None:intergenic 40.0%
GTAACAGGATATGGGCAAAT+AGG - chr2_3:60076657-60076676 Msa0303040:intron 40.0%
GCTATATTGCTGAGCTTGAA+AGG - chr2_3:60076714-60076733 Msa0303040:intron 40.0%
! GAAAGTGCAGACATTGCAAA+CGG - chr2_3:60076736-60076755 Msa0303040:intron 40.0%
TGCACAGTTAACTCTCTTAC+AGG - chr2_3:60076775-60076794 Msa0303040:intron 40.0%
AGCAGAAAAGTAGTAGCTTC+AGG + chr2_3:60077033-60077052 None:intergenic 40.0%
AAGCTTGAGAATATCCAAGG+TGG - chr2_3:60077325-60077344 Msa0303040:CDS 40.0%
TCAAGATAAACTGTCCACCT+TGG + chr2_3:60077342-60077361 None:intergenic 40.0%
! ACGCGTCATTTAAAGCTACA+AGG + chr2_3:60077411-60077430 None:intergenic 40.0%
!! ACGCATTTGAAAGTACTGAC+TGG - chr2_3:60077445-60077464 Msa0303040:CDS 40.0%
!! CGCATTTGAAAGTACTGACT+GGG - chr2_3:60077446-60077465 Msa0303040:CDS 40.0%
AAGTTCATAGGTCCTCCATT+TGG + chr2_3:60077484-60077503 None:intergenic 40.0%
GTGCATGGCATGGTTATTAT+TGG + chr2_3:60077539-60077558 None:intergenic 40.0%
!! GCTGTTTCTGAGGATGAATT+TGG + chr2_3:60077594-60077613 None:intergenic 40.0%
CGGAATGAAGAGAGAGAAAG+TGG + chr2_3:60074202-60074221 None:intergenic 45.0%
GTAGATCAGGGGAGATAGAT+TGG + chr2_3:60074273-60074292 None:intergenic 45.0%
TAGGGTCAAGGAATCGTGAA+TGG - chr2_3:60074548-60074567 Msa0303040:CDS 45.0%
GACAAATCATTGGGTCTTGG+CGG - chr2_3:60074576-60074595 Msa0303040:CDS 45.0%
TATCCGGGTTATTCACCAAC+TGG - chr2_3:60074624-60074643 Msa0303040:CDS 45.0%
!! CTTCCAGTTGGTGAATAACC+CGG + chr2_3:60074630-60074649 None:intergenic 45.0%
GGTTATTCACCAACTGGAAG+TGG - chr2_3:60074630-60074649 Msa0303040:CDS 45.0%
AAAGCCACTAGAATCTGAGC+TGG + chr2_3:60074712-60074731 None:intergenic 45.0%
! CTATGACCTCTATTTCTCGG+AGG + chr2_3:60074765-60074784 None:intergenic 45.0%
TTCCGAGATTCTTACCTTGC+CGG - chr2_3:60074794-60074813 Msa0303040:intron 45.0%
ATCCGGCAAGGTAAGAATCT+CGG + chr2_3:60074799-60074818 None:intergenic 45.0%
TCGGTATCATCAGAGAACGA+CGG + chr2_3:60074870-60074889 None:intergenic 45.0%
! TGCCATATTTTCCCCAGAAG+AGG + chr2_3:60075039-60075058 None:intergenic 45.0%
TCTGGGGAAAATATGGCAGT+CGG - chr2_3:60075041-60075060 Msa0303040:intron 45.0%
! GATTGTTGTTGACCCATCCA+TGG + chr2_3:60075111-60075130 None:intergenic 45.0%
GAACCCGAGATTAACATCTC+AGG + chr2_3:60075137-60075156 None:intergenic 45.0%
!!! GGCTGCTGACATTGCTTTTT+TGG + chr2_3:60075183-60075202 None:intergenic 45.0%
ATCCTGACGTGTATTCCACT+CGG - chr2_3:60075458-60075477 Msa0303040:CDS 45.0%
TTGAGGAATTCACGGCATGT+TGG + chr2_3:60075515-60075534 None:intergenic 45.0%
!! TTGGGTCTTTGAGACAGGAT+AGG - chr2_3:60075680-60075699 Msa0303040:intron 45.0%
GATAACATCTAGGGAAGGGT+TGG + chr2_3:60076171-60076190 None:intergenic 45.0%
CCCTTCCCTAGATGTTATCA+TGG - chr2_3:60076172-60076191 Msa0303040:intron 45.0%
ATCAATACCTGCTGCAGTGT+GGG + chr2_3:60076402-60076421 None:intergenic 45.0%
GATAGAATGGCCTTCCTTAG+AGG - chr2_3:60076435-60076454 Msa0303040:intron 45.0%
TGTATAGACTGTGCCCTCTA+AGG + chr2_3:60076452-60076471 None:intergenic 45.0%
!! CAAGTGAACTTGTTGCTCCA+TGG + chr2_3:60076977-60076996 None:intergenic 45.0%
CAACAAGTTCACTTGCAGGA+TGG - chr2_3:60076982-60077001 Msa0303040:CDS 45.0%
GTGCATGTTTAGTGTGAAGC+TGG - chr2_3:60077208-60077227 Msa0303040:CDS 45.0%
TTCATAGGTCCTCCATTTGG+CGG + chr2_3:60077481-60077500 None:intergenic 45.0%
!! TGATGTTGCTGCTGTTTCTG+AGG + chr2_3:60077604-60077623 None:intergenic 45.0%
!! GAAGGATTATCTTTGGGGCA+TGG + chr2_3:60077757-60077776 None:intergenic 45.0%
CGCAGTTTCTCAACAATCCT+TGG + chr2_3:60077803-60077822 None:intergenic 45.0%
!! TTGTCTTGGTGTCCTAGTGT+TGG - chr2_3:60077850-60077869 Msa0303040:intron 45.0%
TCTATCTCCCCTGATCTACG+CGG - chr2_3:60074274-60074293 Msa0303040:three_prime_UTR 50.0%
AAATCATTGGGTCTTGGCGG+TGG - chr2_3:60074579-60074598 Msa0303040:CDS 50.0%
ACCTCCATCAGGACGTTATC+CGG - chr2_3:60074608-60074627 Msa0303040:CDS 50.0%
TAACCCGGATAACGTCCTGA+TGG + chr2_3:60074615-60074634 None:intergenic 50.0%
! CTAGAATCTGAGCTGGTTCC+AGG + chr2_3:60074705-60074724 None:intergenic 50.0%
GGAACCAGCTCAGATTCTAG+TGG - chr2_3:60074705-60074724 Msa0303040:CDS 50.0%
! GATAGTGACCTCGGTGTAGT+TGG - chr2_3:60074831-60074850 Msa0303040:intron 50.0%
GTCGTTCTCTGATGATACCG+AGG - chr2_3:60074869-60074888 Msa0303040:intron 50.0%
! CTGTGCTGGTGTCTGATTCT+GGG + chr2_3:60075083-60075102 None:intergenic 50.0%
TTGTTGACCCATCCATGGAC+TGG + chr2_3:60075106-60075125 None:intergenic 50.0%
CAAGGCAAGTTCTGCAAGCT+TGG + chr2_3:60075204-60075223 None:intergenic 50.0%
TTGACCCCAAGCGTGCAAAA+AGG - chr2_3:60075225-60075244 Msa0303040:CDS 50.0%
GGAAGGGTTGGACCCATTAT+GGG + chr2_3:60076159-60076178 None:intergenic 50.0%
! GGAAGTAGCTCTATAGCACC+AGG - chr2_3:60076193-60076212 Msa0303040:intron 50.0%
CAGTGTGGGAAGGGATCAAA+AGG + chr2_3:60076388-60076407 None:intergenic 50.0%
CATCAATACCTGCTGCAGTG+TGG + chr2_3:60076403-60076422 None:intergenic 50.0%
! TAGACTGTGCCCTCTAAGGA+AGG + chr2_3:60076448-60076467 None:intergenic 50.0%
ATGGGCAAATAGGCAGTCTG+CGG - chr2_3:60076667-60076686 Msa0303040:intron 50.0%
CTGCGGCAAGGTCAAAAGAA+AGG - chr2_3:60076684-60076703 Msa0303040:intron 50.0%
AGAACAGTGAGCTGAAGCTG+CGG - chr2_3:60076944-60076963 Msa0303040:CDS 50.0%
GGAGCAACAAGTTCACTTGC+AGG - chr2_3:60076978-60076997 Msa0303040:CDS 50.0%
! CCAAAAGAGTGTGCATGGCA+TGG + chr2_3:60077549-60077568 None:intergenic 50.0%
! CCATGCCATGCACACTCTTT+TGG - chr2_3:60077546-60077565 Msa0303040:CDS 50.0%
! TGCAGCCAAAAGAGTGTGCA+TGG + chr2_3:60077554-60077573 None:intergenic 50.0%
!! GGATTATCTTTGGGGCATGG+AGG + chr2_3:60077754-60077773 None:intergenic 50.0%
TGTAAATCCTTCGGCAGCCA+AGG - chr2_3:60077783-60077802 Msa0303040:intron 50.0%
!! CTTGGTGTCCTAGTGTTGGT+AGG - chr2_3:60077854-60077873 Msa0303040:intron 50.0%
! GGTGGTTTTCCACCTCCATC+AGG - chr2_3:60074597-60074616 Msa0303040:CDS 55.0%
GGATAACGTCCTGATGGAGG+TGG + chr2_3:60074609-60074628 None:intergenic 55.0%
CCTCCATCAGGACGTTATCC+GGG - chr2_3:60074609-60074628 Msa0303040:CDS 55.0%
! AGTGACCTCGGTGTAGTTGG+TGG - chr2_3:60074834-60074853 Msa0303040:intron 55.0%
!! GGTGTAGTTGGTGGTGCTGA+TGG - chr2_3:60074843-60074862 Msa0303040:intron 55.0%
GTCTAATGCTGCCGGAGCAT+CGG - chr2_3:60074971-60074990 Msa0303040:intron 55.0%
! TCTAATGCTGCCGGAGCATC+GGG - chr2_3:60074972-60074991 Msa0303040:intron 55.0%
ATCGGGTTTGGCGCCAATGT+CGG - chr2_3:60074989-60075008 Msa0303040:intron 55.0%
GTTTGGCGCCAATGTCGGTA+GGG - chr2_3:60074994-60075013 Msa0303040:intron 55.0%
GATGTCTGCCCTACCGACAT+TGG + chr2_3:60075005-60075024 None:intergenic 55.0%
ATGTCGGTAGGGCAGACATC+AGG - chr2_3:60075005-60075024 Msa0303040:intron 55.0%
!! TCAGGAGGAGGTACCTCTTC+TGG - chr2_3:60075023-60075042 Msa0303040:intron 55.0%
!! CAGGAGGAGGTACCTCTTCT+GGG - chr2_3:60075024-60075043 Msa0303040:intron 55.0%
!! AGGAGGAGGTACCTCTTCTG+GGG - chr2_3:60075025-60075044 Msa0303040:intron 55.0%
! GCTGTGCTGGTGTCTGATTC+TGG + chr2_3:60075084-60075103 None:intergenic 55.0%
AGCACAGCCAGTCCATGGAT+GGG - chr2_3:60075096-60075115 Msa0303040:intron 55.0%
TGCACGCTTGGGGTCAATCA+AGG + chr2_3:60075222-60075241 None:intergenic 55.0%
GACCGAGTGGAATACACGTC+AGG + chr2_3:60075463-60075482 None:intergenic 55.0%
GGGAAGGGTTGGACCCATTA+TGG + chr2_3:60076160-60076179 None:intergenic 55.0%
TACCTGCTGCAGTGTGGGAA+GGG + chr2_3:60076397-60076416 None:intergenic 55.0%
ATACCTGCTGCAGTGTGGGA+AGG + chr2_3:60076398-60076417 None:intergenic 55.0%
CAAATAGGCAGTCTGCGGCA+AGG - chr2_3:60076672-60076691 Msa0303040:intron 55.0%
GAAGCTGCGGTTGCAAACCA+TGG - chr2_3:60076957-60076976 Msa0303040:CDS 55.0%
CAAGCTATGCCGCCAAATGG+AGG - chr2_3:60077469-60077488 Msa0303040:CDS 55.0%
ACAAATGCAGCAGCAGCAGC+AGG - chr2_3:60077681-60077700 Msa0303040:intron 55.0%
CAACAATCCTTGGCTGCCGA+AGG + chr2_3:60077793-60077812 None:intergenic 55.0%
GGCTGCAACCTACCAACACT+AGG + chr2_3:60077865-60077884 None:intergenic 55.0%
CTTTGCGCCGCGTAGATCAG+GGG + chr2_3:60074284-60074303 None:intergenic 60.0%
CCTTTGCGCCGCGTAGATCA+GGG + chr2_3:60074285-60074304 None:intergenic 60.0%
ACCTTTGCGCCGCGTAGATC+AGG + chr2_3:60074286-60074305 None:intergenic 60.0%
CCCGGATAACGTCCTGATGG+AGG + chr2_3:60074612-60074631 None:intergenic 60.0%
! GGCGGATACGACGATGATGG+GGG + chr2_3:60074675-60074694 None:intergenic 60.0%
CGGCGGATACGACGATGATG+GGG + chr2_3:60074676-60074695 None:intergenic 60.0%
GCGGCGGATACGACGATGAT+GGG + chr2_3:60074677-60074696 None:intergenic 60.0%
AGCGGCGGATACGACGATGA+TGG + chr2_3:60074678-60074697 None:intergenic 60.0%
! GAGCTGGTTCCAGGAGCAAG+CGG + chr2_3:60074696-60074715 None:intergenic 60.0%
CAGCACCACCAACTACACCG+AGG + chr2_3:60074842-60074861 None:intergenic 60.0%
GGTGAGGGGTCTAATGCTGC+CGG - chr2_3:60074963-60074982 Msa0303040:intron 60.0%
GGTTTGGCGCCAATGTCGGT+AGG - chr2_3:60074993-60075012 Msa0303040:intron 60.0%
TCGGTAGGGCAGACATCAGG+AGG - chr2_3:60075008-60075027 Msa0303040:intron 60.0%
GTAGGGCAGACATCAGGAGG+AGG - chr2_3:60075011-60075030 Msa0303040:intron 60.0%
ACACCAGCACAGCCAGTCCA+TGG - chr2_3:60075091-60075110 Msa0303040:intron 60.0%
!! CATCCATGGACTGGCTGTGC+TGG + chr2_3:60075097-60075116 None:intergenic 60.0%
CAGCACAGCCAGTCCATGGA+TGG - chr2_3:60075095-60075114 Msa0303040:intron 60.0%
ATCCCTTCCCACACTGCAGC+AGG - chr2_3:60076392-60076411 Msa0303040:intron 60.0%
GGGCAAGCTATGCCGCCAAA+TGG - chr2_3:60077466-60077485 Msa0303040:CDS 60.0%
CCCTGATCTACGCGGCGCAA+AGG - chr2_3:60074282-60074301 Msa0303040:three_prime_UTR 65.0%
TCGTATCCGCCGCTTGCTCC+TGG - chr2_3:60074684-60074703 Msa0303040:CDS 65.0%
CTGGTTCCAGGAGCAAGCGG+CGG + chr2_3:60074693-60074712 None:intergenic 65.0%
!! TGCTGCCGGAGCATCGGGTT+TGG - chr2_3:60074977-60074996 Msa0303040:intron 65.0%
TGGCGCCAAACCCGATGCTC+CGG + chr2_3:60074985-60075004 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 60074099 60078089 60074099 ID=Msa0303040;Name=Msa0303040
chr2_3 mRNA 60074099 60078089 60074099 ID=Msa0303040-mRNA-1;Parent=Msa0303040;Name=Msa0303040-mRNA-1;_AED=0.08;_eAED=0.08;_QI=254|1|1|1|0.6|0.5|6|276|431
chr2_3 exon 60074099 60074772 60074099 ID=Msa0303040-mRNA-1:exon:19549;Parent=Msa0303040-mRNA-1
chr2_3 exon 60075185 60075269 60075185 ID=Msa0303040-mRNA-1:exon:19548;Parent=Msa0303040-mRNA-1
chr2_3 exon 60075392 60075524 60075392 ID=Msa0303040-mRNA-1:exon:19547;Parent=Msa0303040-mRNA-1
chr2_3 exon 60076942 60077691 60076942 ID=Msa0303040-mRNA-1:exon:19546;Parent=Msa0303040-mRNA-1
chr2_3 exon 60077885 60077993 60077885 ID=Msa0303040-mRNA-1:exon:19545;Parent=Msa0303040-mRNA-1
chr2_3 exon 60078015 60078089 60078015 ID=Msa0303040-mRNA-1:exon:19544;Parent=Msa0303040-mRNA-1
chr2_3 five_prime_UTR 60078015 60078089 60078015 ID=Msa0303040-mRNA-1:five_prime_utr;Parent=Msa0303040-mRNA-1
chr2_3 five_prime_UTR 60077885 60077993 60077885 ID=Msa0303040-mRNA-1:five_prime_utr;Parent=Msa0303040-mRNA-1
chr2_3 five_prime_UTR 60077622 60077691 60077622 ID=Msa0303040-mRNA-1:five_prime_utr;Parent=Msa0303040-mRNA-1
chr2_3 CDS 60076942 60077621 60076942 ID=Msa0303040-mRNA-1:cds;Parent=Msa0303040-mRNA-1
chr2_3 CDS 60075392 60075524 60075392 ID=Msa0303040-mRNA-1:cds;Parent=Msa0303040-mRNA-1
chr2_3 CDS 60075185 60075269 60075185 ID=Msa0303040-mRNA-1:cds;Parent=Msa0303040-mRNA-1
chr2_3 CDS 60074375 60074772 60074375 ID=Msa0303040-mRNA-1:cds;Parent=Msa0303040-mRNA-1
chr2_3 three_prime_UTR 60074099 60074374 60074099 ID=Msa0303040-mRNA-1:three_prime_utr;Parent=Msa0303040-mRNA-1
Gene Sequence

>Msa0303040

ATGGAAAAGGACAAATCATTGGGTCTTGGCGGTGGTTTTCCACCTCCATCAGGACGTTATCCGGGTTATTCACCAACTGGAAGTGGTTTCAATGTGAAATCTGAACCCCCATCATCGTCGTATCCGCCGCTTGCTCCTGGAACCAGCTCAGATTCTAGTGGCTTTAGTCATGATATAAGCAAAATGTCTGATAATCCTCCGAGAAATAGAGGTCATAGACGTGCTCATTCCGAGATTCTTACCTTGCCGGATGATATTAGCTTTGATAGTGACCTCGGTGTAGTTGGTGGTGCTGATGGACCGTCGTTCTCTGATGATACCGAGGAAGATTTGTTGTCCATGTACCTTGATATGGATAAGTTCAATTCGTCGTCAGCAACGTCTAATTTTCAAATGGGTGAGGGGTCTAATGCTGCCGGAGCATCGGGTTTGGCGCCAATGTCGGTAGGGCAGACATCAGGAGGAGGTACCTCTTCTGGGGAAAATATGGCAGTCGGTACTACAAATGAAAGGCCCAGAATCAGACACCAGCACAGCCAGTCCATGGATGGGTCAACAACAATCAAACCTGAGATGTTAATCTCGGGTTCAGATGACATGTCTGCAGCCGATTCCAAAAAAGCAATGTCAGCAGCCAAGCTTGCAGAACTTGCCTTGATTGACCCCAAGCGTGCAAAAAGGATATGGGCAAATAGGCAGTCTGCGGCAAGGTCAAAAGAAAGGAAGATGCGCTATATTGCTGAGCTTGAAAGGAAAGTGCAGACATTGCAAACGGAAGCAACATCTTTGTCTGCACAGTTAACTCTCTTACAGAGAGATACAAGTGGGCTGAATTCTGAGAACAGTGAGCTGAAGCTGCGGTTGCAAACCATGGAGCAACAAGTTCACTTGCAGGATGCTTTAAATGACGCGTTAAAAGAGGAAATTACGCATTTGAAAGTACTGACTGGGCAAGCTATGCCGCCAAATGGAGGACCTATGAACTTTAATTCTTTTGGAGGAGGGCAGCAGTTCTATCCCAATAATAACCATGCCATGCACACTCTTTTGGCTGCACAACAGTTTCAACAGCTCCAAATTCATCCTCAGAAACAGCAGCAACATCAGTTTCAGCAACAAATACAACAACACCAACAAATACAGCAGCAACAAATGCAACAGCAACAAATGCAGCAGCAGCAGCAGGAACAACAACAACAACAATCAGGTGACTTGAAAATGAGAGCAACTACACCTCCATGCCCCAAAGATAATCCTTCATCAGATGTAAATCCTTCGGCAGCCAAGGATTGTTGA

Protein sequence

>Msa0303040

MEKDKSLGLGGGFPPPSGRYPGYSPTGSGFNVKSEPPSSSYPPLAPGTSSDSSGFSHDISKMSDNPPRNRGHRRAHSEILTLPDDISFDSDLGVVGGADGPSFSDDTEEDLLSMYLDMDKFNSSSATSNFQMGEGSNAAGASGLAPMSVGQTSGGGTSSGENMAVGTTNERPRIRHQHSQSMDGSTTIKPEMLISGSDDMSAADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTSGLNSENSELKLRLQTMEQQVHLQDALNDALKEEITHLKVLTGQAMPPNGGPMNFNSFGGGQQFYPNNNHAMHTLLAAQQFQQLQIHPQKQQQHQFQQQIQQHQQIQQQQMQQQQMQQQQQEQQQQQSGDLKMRATTPPCPKDNPSSDVNPSAAKDC*