Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0303040 | XP_003597529.1 | 97.912 | 431 | 7 | 1 | 1 | 431 | 1 | 429 | 0.0 | 862 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0303040 | sp|Q04088|POF21_ARATH | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.02e-150 | 435 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0303040 | G7IHV8 | 97.912 | 431 | 7 | 1 | 1 | 431 | 1 | 429 | 0.0 | 862 |
Gene ID | Type | Classification |
---|---|---|
Msa0303040 | TF | bZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0303040 | Msa1242940 | 0.800576 | 1.350629e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0303040 | MtrunA17_Chr2g0329551 | 97.912 | 431 | 7 | 1 | 1 | 431 | 1 | 429 | 0.0 | 862 |
Msa0303040 | MtrunA17_Chr3g0107491 | 45.402 | 348 | 141 | 10 | 72 | 406 | 38 | 349 | 3.26e-66 | 216 |
Msa0303040 | MtrunA17_Chr5g0432701 | 52.549 | 255 | 68 | 9 | 72 | 320 | 51 | 258 | 8.96e-65 | 212 |
Msa0303040 | MtrunA17_Chr3g0128781 | 43.796 | 274 | 80 | 8 | 72 | 335 | 7 | 216 | 6.07e-51 | 174 |
Msa0303040 | MtrunA17_Chr4g0036071 | 44.318 | 264 | 88 | 8 | 109 | 323 | 213 | 466 | 3.38e-49 | 174 |
Msa0303040 | MtrunA17_Chr6g0463571 | 42.532 | 308 | 122 | 12 | 66 | 366 | 22 | 281 | 8.73e-48 | 166 |
Msa0303040 | MtrunA17_Chr1g0156051 | 59.712 | 139 | 53 | 2 | 176 | 313 | 343 | 479 | 2.17e-32 | 129 |
Msa0303040 | MtrunA17_Chr2g0316551 | 37.821 | 156 | 82 | 2 | 219 | 374 | 206 | 346 | 2.13e-20 | 92.0 |
Msa0303040 | MtrunA17_Chr2g0325131 | 45.614 | 114 | 57 | 2 | 219 | 327 | 189 | 302 | 1.48e-19 | 89.4 |
Msa0303040 | MtrunA17_Chr4g0040891 | 46.000 | 100 | 54 | 0 | 219 | 318 | 192 | 291 | 8.30e-19 | 87.0 |
Msa0303040 | MtrunA17_Chr1g0202051 | 36.697 | 109 | 69 | 0 | 206 | 314 | 109 | 217 | 2.65e-13 | 70.1 |
Msa0303040 | MtrunA17_Chr8g0380611 | 27.341 | 267 | 158 | 6 | 58 | 313 | 80 | 321 | 2.66e-12 | 68.2 |
Msa0303040 | MtrunA17_Chr2g0306581 | 63.265 | 49 | 18 | 0 | 209 | 257 | 1 | 49 | 2.93e-12 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0303040 | AT1G06070.1 | 73.810 | 336 | 69 | 6 | 19 | 352 | 21 | 339 | 3.64e-168 | 479 |
Msa0303040 | AT2G31370.5 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 6.84e-152 | 436 |
Msa0303040 | AT2G31370.2 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.05e-151 | 435 |
Msa0303040 | AT2G31370.4 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.05e-151 | 435 |
Msa0303040 | AT2G31370.1 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.05e-151 | 435 |
Msa0303040 | AT2G31370.7 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.05e-151 | 435 |
Msa0303040 | AT2G31370.3 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.05e-151 | 435 |
Msa0303040 | AT2G31370.6 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.05e-151 | 435 |
Msa0303040 | AT2G40620.1 | 49.231 | 260 | 95 | 7 | 66 | 324 | 28 | 251 | 2.15e-61 | 203 |
Msa0303040 | AT1G43700.1 | 49.746 | 197 | 90 | 3 | 161 | 348 | 129 | 325 | 2.14e-49 | 171 |
Msa0303040 | AT1G06850.1 | 52.459 | 183 | 61 | 2 | 204 | 360 | 131 | 313 | 4.19e-48 | 167 |
Msa0303040 | AT4G38900.2 | 67.769 | 121 | 39 | 0 | 199 | 319 | 372 | 492 | 1.22e-45 | 166 |
Msa0303040 | AT4G38900.3 | 67.769 | 121 | 39 | 0 | 199 | 319 | 372 | 492 | 1.22e-45 | 166 |
Msa0303040 | AT4G38900.1 | 41.328 | 271 | 99 | 7 | 109 | 319 | 228 | 498 | 3.54e-43 | 159 |
Msa0303040 | AT2G21230.4 | 63.415 | 123 | 45 | 0 | 196 | 318 | 345 | 467 | 1.31e-42 | 157 |
Msa0303040 | AT2G21230.1 | 63.415 | 123 | 45 | 0 | 196 | 318 | 345 | 467 | 1.31e-42 | 157 |
Msa0303040 | AT2G21230.3 | 59.690 | 129 | 46 | 1 | 196 | 318 | 345 | 473 | 1.39e-39 | 149 |
Msa0303040 | AT2G21230.2 | 65.421 | 107 | 37 | 0 | 196 | 302 | 345 | 451 | 6.78e-37 | 140 |
Msa0303040 | AT1G06850.2 | 76.712 | 73 | 17 | 0 | 204 | 276 | 131 | 203 | 8.33e-27 | 107 |
Msa0303040 | AT2G42380.2 | 47.000 | 100 | 53 | 0 | 219 | 318 | 184 | 283 | 5.76e-20 | 90.5 |
Msa0303040 | AT3G58120.1 | 47.959 | 98 | 51 | 0 | 221 | 318 | 202 | 299 | 1.01e-19 | 90.1 |
Msa0303040 | AT2G12900.1 | 34.109 | 129 | 77 | 1 | 196 | 316 | 83 | 211 | 1.37e-18 | 85.5 |
Msa0303040 | AT2G42380.5 | 47.619 | 84 | 44 | 0 | 219 | 302 | 184 | 267 | 3.48e-17 | 81.6 |
Msa0303040 | AT3G58120.2 | 49.367 | 79 | 40 | 0 | 221 | 299 | 202 | 280 | 4.64e-16 | 78.6 |
Msa0303040 | AT2G13150.1 | 37.615 | 109 | 67 | 1 | 207 | 315 | 136 | 243 | 6.18e-16 | 77.8 |
Msa0303040 | AT2G12940.1 | 34.188 | 117 | 76 | 1 | 197 | 313 | 125 | 240 | 3.02e-15 | 76.3 |
Msa0303040 | AT2G42380.1 | 42.000 | 100 | 47 | 1 | 219 | 318 | 184 | 272 | 1.29e-13 | 71.6 |
Msa0303040 | AT2G21235.1 | 43.678 | 87 | 49 | 0 | 221 | 307 | 359 | 445 | 3.34e-13 | 72.0 |
Msa0303040 | AT1G58110.1 | 41.860 | 86 | 50 | 0 | 230 | 315 | 238 | 323 | 1.21e-11 | 66.2 |
Msa0303040 | AT1G58110.2 | 41.860 | 86 | 50 | 0 | 230 | 315 | 238 | 323 | 1.21e-11 | 66.2 |
Msa0303040 | AT2G42380.3 | 60.000 | 45 | 18 | 0 | 219 | 263 | 184 | 228 | 7.67e-11 | 62.4 |
Msa0303040 | AT2G42380.4 | 60.000 | 45 | 18 | 0 | 219 | 263 | 184 | 228 | 7.67e-11 | 62.4 |
Find 150 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTGTGCTGGTGTCTGATTC+TGG | 0.087788 | 2_3:+60077085 | None:intergenic |
TCCCCTTTCTCTCTATTTCT+AGG | 0.178092 | 2_3:-60077935 | Msa0303040:five_prime_UTR |
CCTATGAACTTTAATTCTTT+TGG | 0.197858 | 2_3:-60074673 | Msa0303040:CDS |
TTCTTGGCATCTCAGTTAAT+TGG | 0.220227 | 2_3:-60074190 | Msa0303040:three_prime_UTR |
GTGATTGCTTAGTGTTGTTT+AGG | 0.228415 | 2_3:-60077637 | Msa0303040:five_prime_UTR |
GCTGTTTCTGAGGATGAATT+TGG | 0.240472 | 2_3:+60074575 | None:intergenic |
TGAAGTGATTGAACTGGATT+AGG | 0.244656 | 2_3:-60077664 | Msa0303040:five_prime_UTR |
ATCTGATGAAGGATTATCTT+TGG | 0.251730 | 2_3:+60074405 | None:intergenic |
CCATGCCATGCACACTCTTT+TGG | 0.268695 | 2_3:-60074620 | Msa0303040:CDS |
TGTATAATACTAAAATTTCT+TGG | 0.277005 | 2_3:-60074206 | Msa0303040:three_prime_UTR |
GTGCATGGCATGGTTATTAT+TGG | 0.277488 | 2_3:+60074630 | None:intergenic |
TCAGGAGGAGGTACCTCTTC+TGG | 0.279881 | 2_3:-60077143 | Msa0303040:CDS |
CTAGAATCTGAGCTGGTTCC+AGG | 0.284646 | 2_3:+60077464 | None:intergenic |
TTCCGAGATTCTTACCTTGC+CGG | 0.302193 | 2_3:-60077372 | Msa0303040:CDS |
ACCTTTGCGCCGCGTAGATC+AGG | 0.306683 | 2_3:+60077883 | None:intergenic |
ACCTCCATCAGGACGTTATC+CGG | 0.323576 | 2_3:-60077558 | Msa0303040:CDS |
TACCTCTTCTGGGGAAAATA+TGG | 0.331870 | 2_3:-60077132 | Msa0303040:CDS |
TGATTGCTTAGTGTTGTTTA+GGG | 0.334346 | 2_3:-60077636 | Msa0303040:five_prime_UTR |
TCTGATGAAGGATTATCTTT+GGG | 0.340833 | 2_3:+60074406 | None:intergenic |
CTGTGCTGGTGTCTGATTCT+GGG | 0.348924 | 2_3:+60077086 | None:intergenic |
ACAAATGCAGCAGCAGCAGC+AGG | 0.359774 | 2_3:-60074485 | Msa0303040:CDS |
GAAGTGATTGAACTGGATTA+GGG | 0.360372 | 2_3:-60077663 | Msa0303040:five_prime_UTR |
TTTGTTGCTGCTGTATTTGT+TGG | 0.370991 | 2_3:+60074518 | None:intergenic |
TGCACAGTTAACTCTCTTAC+AGG | 0.371836 | 2_3:-60075391 | Msa0303040:intron |
TTGTTGATTGAGATGGTATA+GGG | 0.373709 | 2_3:-60074110 | Msa0303040:three_prime_UTR |
CCCCTTTCTCTCTATTTCTA+GGG | 0.376649 | 2_3:-60077934 | Msa0303040:five_prime_UTR |
CAGGAGGAGGTACCTCTTCT+GGG | 0.381898 | 2_3:-60077142 | Msa0303040:CDS |
GTTGTCCATGTACCTTGATA+TGG | 0.382193 | 2_3:-60077267 | Msa0303040:CDS |
CGCAGTTTCTCAACAATCCT+TGG | 0.383849 | 2_3:+60074366 | None:intergenic |
TCGTATCCGCCGCTTGCTCC+TGG | 0.385842 | 2_3:-60077482 | Msa0303040:CDS |
TTTGTTGATTGAGATGGTAT+AGG | 0.386419 | 2_3:-60074111 | Msa0303040:three_prime_UTR |
GTCTAATGCTGCCGGAGCAT+CGG | 0.391354 | 2_3:-60077195 | Msa0303040:CDS |
TGCTGCCGGAGCATCGGGTT+TGG | 0.393129 | 2_3:-60077189 | Msa0303040:CDS |
CGGAATGAAGAGAGAGAAAG+TGG | 0.396602 | 2_3:+60077967 | None:intergenic |
CATCCATGGACTGGCTGTGC+TGG | 0.409055 | 2_3:+60077072 | None:intergenic |
GGAGCAACAAGTTCACTTGC+AGG | 0.420631 | 2_3:-60075188 | Msa0303040:CDS |
TCTAATGCTGCCGGAGCATC+GGG | 0.422071 | 2_3:-60077194 | Msa0303040:CDS |
AATGGAAAAGGACAAATCAT+TGG | 0.426956 | 2_3:-60077600 | Msa0303040:CDS |
TTGACCCCAAGCGTGCAAAA+AGG | 0.430308 | 2_3:-60076941 | Msa0303040:intron |
CAAGGCAAGTTCTGCAAGCT+TGG | 0.432209 | 2_3:+60076965 | None:intergenic |
AACCCTAGAAATAGAGAGAA+AGG | 0.437708 | 2_3:+60077932 | None:intergenic |
TGCACGCTTGGGGTCAATCA+AGG | 0.439782 | 2_3:+60076947 | None:intergenic |
GTTTGATTCGTTGACGAGAA+TGG | 0.440805 | 2_3:-60078061 | Msa0303040:five_prime_UTR |
GAGAAAGGGGAAATGAATAT+CGG | 0.452502 | 2_3:+60077947 | None:intergenic |
TTTAAATGACGCGTTAAAAG+AGG | 0.453730 | 2_3:-60074749 | Msa0303040:CDS |
CTTAGTGTTGTTTAGGGTCA+AGG | 0.453918 | 2_3:-60077630 | Msa0303040:five_prime_UTR |
TATCCGGGTTATTCACCAAC+TGG | 0.455335 | 2_3:-60077542 | Msa0303040:CDS |
GTAACAGGATATGGGCAAAT+AGG | 0.455791 | 2_3:-60075509 | Msa0303040:intron |
CAAGTGAACTTGTTGCTCCA+TGG | 0.458049 | 2_3:+60075192 | None:intergenic |
TGCATGGCATGGTTATTATT+GGG | 0.461227 | 2_3:+60074631 | None:intergenic |
ATTTGTGTGTAACAGGATAT+GGG | 0.465089 | 2_3:-60075517 | Msa0303040:intron |
GTTTACTTTGTTGATTGAGA+TGG | 0.465856 | 2_3:-60074117 | Msa0303040:three_prime_UTR |
GGCTATGAATATATCAATGT+AGG | 0.467004 | 2_3:-60074169 | Msa0303040:three_prime_UTR |
TGGCGCCAAACCCGATGCTC+CGG | 0.468192 | 2_3:+60077184 | None:intergenic |
GTAGATCAGGGGAGATAGAT+TGG | 0.469223 | 2_3:+60077896 | None:intergenic |
AAATCATTGGGTCTTGGCGG+TGG | 0.469321 | 2_3:-60077587 | Msa0303040:CDS |
CAAACCTGAGATGTTAATCT+CGG | 0.472947 | 2_3:-60077036 | Msa0303040:CDS |
TTCATCAGATGTAAATCCTT+CGG | 0.478143 | 2_3:-60074392 | Msa0303040:CDS |
AAGTTCATAGGTCCTCCATT+TGG | 0.480765 | 2_3:+60074685 | None:intergenic |
CCAAAAGAATTAAAGTTCAT+AGG | 0.483391 | 2_3:+60074673 | None:intergenic |
CGTCTATGACCTCTATTTCT+CGG | 0.485976 | 2_3:+60077401 | None:intergenic |
CCTTTGCGCCGCGTAGATCA+GGG | 0.489306 | 2_3:+60077884 | None:intergenic |
GCGGCGGATACGACGATGAT+GGG | 0.489367 | 2_3:+60077492 | None:intergenic |
GGTTATTCACCAACTGGAAG+TGG | 0.489501 | 2_3:-60077536 | Msa0303040:CDS |
AAGGACAAATCATTGGGTCT+TGG | 0.496632 | 2_3:-60077593 | Msa0303040:CDS |
CAAGGAATCGTGAATGGAAA+AGG | 0.498524 | 2_3:-60077612 | Msa0303040:exon |
GGGCAAGCTATGCCGCCAAA+TGG | 0.498892 | 2_3:-60074700 | Msa0303040:CDS |
ACCCTAGAAATAGAGAGAAA+GGG | 0.501328 | 2_3:+60077933 | None:intergenic |
GGTGTAGTTGGTGGTGCTGA+TGG | 0.502800 | 2_3:-60077323 | Msa0303040:CDS |
CTTGGTGTCCTAGTGTTGGT+AGG | 0.502821 | 2_3:-60074312 | Msa0303040:three_prime_UTR |
GACAAATCATTGGGTCTTGG+CGG | 0.504559 | 2_3:-60077590 | Msa0303040:CDS |
GAAGGATTTACATCTGATGA+AGG | 0.504672 | 2_3:+60074394 | None:intergenic |
CGCATTTGAAAGTACTGACT+GGG | 0.505823 | 2_3:-60074720 | Msa0303040:CDS |
ATGGAAAAGGACAAATCATT+GGG | 0.507816 | 2_3:-60077599 | Msa0303040:CDS |
GATAGTGACCTCGGTGTAGT+TGG | 0.507851 | 2_3:-60077335 | Msa0303040:CDS |
AGCGGCGGATACGACGATGA+TGG | 0.508995 | 2_3:+60077491 | None:intergenic |
TTCATAGGTCCTCCATTTGG+CGG | 0.509377 | 2_3:+60074688 | None:intergenic |
CAGCACAGCCAGTCCATGGA+TGG | 0.510016 | 2_3:-60077071 | Msa0303040:CDS |
CAACAATCCTTGGCTGCCGA+AGG | 0.516507 | 2_3:+60074376 | None:intergenic |
CTATCAAAGCTAATATCATC+CGG | 0.517208 | 2_3:+60077353 | None:intergenic |
GATTGTTGTTGACCCATCCA+TGG | 0.518412 | 2_3:+60077058 | None:intergenic |
TATAGGAAGGGCAGTTGCTA+AGG | 0.518572 | 2_3:+60074084 | None:intergenic |
CTTATCCATATCAAGGTACA+TGG | 0.520173 | 2_3:+60077262 | None:intergenic |
ATGTCGGTAGGGCAGACATC+AGG | 0.524354 | 2_3:-60077161 | Msa0303040:CDS |
GCTATATTGCTGAGCTTGAA+AGG | 0.525278 | 2_3:-60075452 | Msa0303040:CDS |
CCTCCATCAGGACGTTATCC+GGG | 0.528655 | 2_3:-60077557 | Msa0303040:CDS |
ATCGGGTTTGGCGCCAATGT+CGG | 0.530842 | 2_3:-60077177 | Msa0303040:CDS |
GGTTTGGCGCCAATGTCGGT+AGG | 0.535811 | 2_3:-60077173 | Msa0303040:CDS |
GATGTCTGCCCTACCGACAT+TGG | 0.538923 | 2_3:+60077164 | None:intergenic |
TAGGGTCAAGGAATCGTGAA+TGG | 0.539205 | 2_3:-60077618 | Msa0303040:exon |
ATCCGGCAAGGTAAGAATCT+CGG | 0.540794 | 2_3:+60077370 | None:intergenic |
CTGCGGCAAGGTCAAAAGAA+AGG | 0.542300 | 2_3:-60075482 | Msa0303040:CDS |
CATGGACAACAAATCTTCCT+CGG | 0.543636 | 2_3:+60077280 | None:intergenic |
CCCTGATCTACGCGGCGCAA+AGG | 0.544257 | 2_3:-60077884 | Msa0303040:intron |
GAAGGATTATCTTTGGGGCA+TGG | 0.547961 | 2_3:+60074412 | None:intergenic |
AATTGAACTTATCCATATCA+AGG | 0.549561 | 2_3:+60077255 | None:intergenic |
TGTAAATCCTTCGGCAGCCA+AGG | 0.553319 | 2_3:-60074383 | Msa0303040:CDS |
GCTATGAATATATCAATGTA+GGG | 0.556993 | 2_3:-60074168 | Msa0303040:three_prime_UTR |
GAACCCGAGATTAACATCTC+AGG | 0.557523 | 2_3:+60077032 | None:intergenic |
ACGCATTTGAAAGTACTGAC+TGG | 0.558522 | 2_3:-60074721 | Msa0303040:CDS |
TTGTCTTGGTGTCCTAGTGT+TGG | 0.558889 | 2_3:-60074316 | Msa0303040:three_prime_UTR |
ACACCAGCACAGCCAGTCCA+TGG | 0.559692 | 2_3:-60077075 | Msa0303040:CDS |
CCCTAGAAATAGAGAGAAAG+GGG | 0.561303 | 2_3:+60077934 | None:intergenic |
GGTGAGGGGTCTAATGCTGC+CGG | 0.563134 | 2_3:-60077203 | Msa0303040:CDS |
TTGTTGACCCATCCATGGAC+TGG | 0.565600 | 2_3:+60077063 | None:intergenic |
GAAAGTGCAGACATTGCAAA+CGG | 0.566063 | 2_3:-60075430 | Msa0303040:CDS |
AAACCTGAGATGTTAATCTC+GGG | 0.567313 | 2_3:-60077035 | Msa0303040:CDS |
GATAATCCTCCGAGAAATAG+AGG | 0.571302 | 2_3:-60077410 | Msa0303040:CDS |
TGATGTTGCTGCTGTTTCTG+AGG | 0.574585 | 2_3:+60074565 | None:intergenic |
CAAGCTATGCCGCCAAATGG+AGG | 0.574883 | 2_3:-60074697 | Msa0303040:CDS |
CTGATGAAGGATTATCTTTG+GGG | 0.574967 | 2_3:+60074407 | None:intergenic |
CGGCGGATACGACGATGATG+GGG | 0.587072 | 2_3:+60077493 | None:intergenic |
AAAGCCACTAGAATCTGAGC+TGG | 0.591242 | 2_3:+60077457 | None:intergenic |
CCAAAAGAGTGTGCATGGCA+TGG | 0.592655 | 2_3:+60074620 | None:intergenic |
CTTCCAGTTGGTGAATAACC+CGG | 0.596092 | 2_3:+60077539 | None:intergenic |
GGATAACGTCCTGATGGAGG+TGG | 0.599011 | 2_3:+60077560 | None:intergenic |
ATTAGCTTTGATAGTGACCT+CGG | 0.599687 | 2_3:-60077344 | Msa0303040:CDS |
ACATTGAAACCACTTCCAGT+TGG | 0.606876 | 2_3:+60077527 | None:intergenic |
TGCAGCCAAAAGAGTGTGCA+TGG | 0.611169 | 2_3:+60074615 | None:intergenic |
AGTGACCTCGGTGTAGTTGG+TGG | 0.612819 | 2_3:-60077332 | Msa0303040:CDS |
GTTTGGCGCCAATGTCGGTA+GGG | 0.616468 | 2_3:-60077172 | Msa0303040:CDS |
AGCACAGCCAGTCCATGGAT+GGG | 0.619422 | 2_3:-60077070 | Msa0303040:CDS |
GAGCTGGTTCCAGGAGCAAG+CGG | 0.619940 | 2_3:+60077473 | None:intergenic |
GAAGCTGCGGTTGCAAACCA+TGG | 0.620439 | 2_3:-60075209 | Msa0303040:CDS |
CAACAAGTTCACTTGCAGGA+TGG | 0.622286 | 2_3:-60075184 | Msa0303040:intron |
TAACCCGGATAACGTCCTGA+TGG | 0.622648 | 2_3:+60077554 | None:intergenic |
CTGGTTCCAGGAGCAAGCGG+CGG | 0.624878 | 2_3:+60077476 | None:intergenic |
AAAGCTAATATCATCCGGCA+AGG | 0.625947 | 2_3:+60077358 | None:intergenic |
CAAATAGGCAGTCTGCGGCA+AGG | 0.630192 | 2_3:-60075494 | Msa0303040:CDS |
TCTGGGGAAAATATGGCAGT+CGG | 0.630934 | 2_3:-60077125 | Msa0303040:CDS |
CCCGGATAACGTCCTGATGG+AGG | 0.636399 | 2_3:+60077557 | None:intergenic |
TCGGTAGGGCAGACATCAGG+AGG | 0.636796 | 2_3:-60077158 | Msa0303040:CDS |
GGCTGCAACCTACCAACACT+AGG | 0.637292 | 2_3:+60074304 | None:intergenic |
CAGTCGGTACTACAAATGAA+AGG | 0.639281 | 2_3:-60077109 | Msa0303040:CDS |
CTTTGCGCCGCGTAGATCAG+GGG | 0.647338 | 2_3:+60077885 | None:intergenic |
GGAACCAGCTCAGATTCTAG+TGG | 0.650014 | 2_3:-60077461 | Msa0303040:CDS |
GGATTATCTTTGGGGCATGG+AGG | 0.651440 | 2_3:+60074415 | None:intergenic |
AGGAGGAGGTACCTCTTCTG+GGG | 0.666286 | 2_3:-60077141 | Msa0303040:CDS |
ATGAACAGAGAGATACAAGT+GGG | 0.666459 | 2_3:-60075255 | Msa0303040:intron |
GTAGGGCAGACATCAGGAGG+AGG | 0.666831 | 2_3:-60077155 | Msa0303040:CDS |
AAGTGATTGAACTGGATTAG+GGG | 0.672133 | 2_3:-60077662 | Msa0303040:five_prime_UTR |
CTATGACCTCTATTTCTCGG+AGG | 0.675680 | 2_3:+60077404 | None:intergenic |
ATGGGCAAATAGGCAGTCTG+CGG | 0.682103 | 2_3:-60075499 | Msa0303040:CDS |
AGAACAGTGAGCTGAAGCTG+CGG | 0.689015 | 2_3:-60075222 | Msa0303040:CDS |
GTCGTTCTCTGATGATACCG+AGG | 0.690738 | 2_3:-60077297 | Msa0303040:CDS |
TATGAACAGAGAGATACAAG+TGG | 0.694542 | 2_3:-60075256 | Msa0303040:intron |
GGCGGATACGACGATGATGG+GGG | 0.706397 | 2_3:+60077494 | None:intergenic |
TCTATCTCCCCTGATCTACG+CGG | 0.750401 | 2_3:-60077892 | Msa0303040:five_prime_UTR |
TCGGTATCATCAGAGAACGA+CGG | 0.752661 | 2_3:+60077299 | None:intergenic |
CAGCACCACCAACTACACCG+AGG | 0.826194 | 2_3:+60077327 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTATTATTAATTTGTTACT+AGG | - | chr2_3:60074475-60074494 | Msa0303040:CDS | 10.0% |
!!! | TTATTATTAATTTGTTACTA+GGG | - | chr2_3:60074476-60074495 | Msa0303040:CDS | 10.0% |
!! | AAAATAACTAAGAAACATTA+TGG | + | chr2_3:60075279-60075298 | None:intergenic | 15.0% |
!! | ACAGAATAATATATAACATT+TGG | + | chr2_3:60075351-60075370 | None:intergenic | 15.0% |
!!! | TCAAATTTTAGAAAATGTAT+TGG | - | chr2_3:60075661-60075680 | Msa0303040:intron | 15.0% |
!!! | CAAATTTTAGAAAATGTATT+GGG | - | chr2_3:60075662-60075681 | Msa0303040:intron | 15.0% |
!!! | TATTGTATACTTTATTTTTG+TGG | - | chr2_3:60075902-60075921 | Msa0303040:intron | 15.0% |
!!! | AAAATTGTAAGATTTTTCTA+AGG | - | chr2_3:60075978-60075997 | Msa0303040:intron | 15.0% |
!!! | TTATTTTCTAAAACTGTTTT+TGG | - | chr2_3:60076327-60076346 | Msa0303040:intron | 15.0% |
!!! | TATTTTCTAAAACTGTTTTT+GGG | - | chr2_3:60076328-60076347 | Msa0303040:intron | 15.0% |
!!! | AGGACTATATTAATATTTTT+TGG | - | chr2_3:60076882-60076901 | Msa0303040:intron | 15.0% |
!! | AGTATTTATTTAATGCAATA+TGG | - | chr2_3:60077096-60077115 | Msa0303040:CDS | 15.0% |
!! | GACAAATATATTAATCTATT+GGG | + | chr2_3:60077178-60077197 | None:intergenic | 15.0% |
!! | AGACAAATATATTAATCTAT+TGG | + | chr2_3:60077179-60077198 | None:intergenic | 15.0% |
!! | TAGATTAATATATTTGTCTT+AGG | - | chr2_3:60077180-60077199 | Msa0303040:CDS | 15.0% |
!! | TAAGAATAAAAAATAGAACA+AGG | + | chr2_3:60077886-60077905 | None:intergenic | 15.0% |
!! | TGTATAATACTAAAATTTCT+TGG | - | chr2_3:60077960-60077979 | Msa0303040:five_prime_UTR | 15.0% |
!! | AGATAACAAAAGAGAAAAAT+TGG | + | chr2_3:60074381-60074400 | None:intergenic | 20.0% |
!! | TAATCTAGCATTCATAAATT+AGG | - | chr2_3:60075384-60075403 | Msa0303040:intron | 20.0% |
!! | AAACATGTTTATAAGCTATA+TGG | + | chr2_3:60075613-60075632 | None:intergenic | 20.0% |
!! | TTGTGTTTATTAATTTCAAC+AGG | + | chr2_3:60075801-60075820 | None:intergenic | 20.0% |
!! | TGAAATTAATAAACACAACA+AGG | - | chr2_3:60075803-60075822 | Msa0303040:intron | 20.0% |
!!! | ACAAAAATATAGTGTTATTG+TGG | + | chr2_3:60075845-60075864 | None:intergenic | 20.0% |
!!! | ACAATAACACTATATTTTTG+TGG | - | chr2_3:60075844-60075863 | Msa0303040:intron | 20.0% |
!!! | ATACAAAATATTGTAGGTTT+TGG | - | chr2_3:60075926-60075945 | Msa0303040:intron | 20.0% |
!! | TTCCAAAAAATCTCATTATT+GGG | - | chr2_3:60076362-60076381 | Msa0303040:intron | 20.0% |
! | GTTGAAAATTGAAATGATGA+AGG | + | chr2_3:60074322-60074341 | None:intergenic | 25.0% |
!! | AATGAGCTAGTTTAAGAAAT+TGG | - | chr2_3:60074409-60074428 | Msa0303040:CDS | 25.0% |
!! | ATGAGCTAGTTTAAGAAATT+GGG | - | chr2_3:60074410-60074429 | Msa0303040:CDS | 25.0% |
! | AATTGAACTTATCCATATCA+AGG | + | chr2_3:60074914-60074933 | None:intergenic | 25.0% |
! | TTTCTCTTTCACTATCATTT+CGG | - | chr2_3:60075558-60075577 | Msa0303040:intron | 25.0% |
! | ATGAGAAAAAATCTCAGAAA+TGG | - | chr2_3:60075727-60075746 | Msa0303040:intron | 25.0% |
!! | GGTACTTTTGTATTATACAT+AGG | + | chr2_3:60075776-60075795 | None:intergenic | 25.0% |
! | GTTTATTAATTTCAACAGGA+AGG | + | chr2_3:60075797-60075816 | None:intergenic | 25.0% |
! | TTCAAATACTACCAAAACAA+TGG | + | chr2_3:60076301-60076320 | None:intergenic | 25.0% |
! | CTTCCAAAAAATCTCATTAT+TGG | - | chr2_3:60076361-60076380 | Msa0303040:intron | 25.0% |
! | TGCAATAGATAAAGCAAAAT+AGG | + | chr2_3:60076528-60076547 | None:intergenic | 25.0% |
!! | TTTTCTTTCTATCTCTTTTG+TGG | - | chr2_3:60076584-60076603 | Msa0303040:intron | 25.0% |
! | AGGAAACATTTATAATGTTG+TGG | + | chr2_3:60077013-60077032 | None:intergenic | 25.0% |
! | TATCCTTGCAATTTACAATA+TGG | - | chr2_3:60077130-60077149 | Msa0303040:CDS | 25.0% |
! | ATACCATATTGTAAATTGCA+AGG | + | chr2_3:60077136-60077155 | None:intergenic | 25.0% |
! | AATATATTTGTCTTAGGTGA+AGG | - | chr2_3:60077186-60077205 | Msa0303040:CDS | 25.0% |
! | CCAAAAGAATTAAAGTTCAT+AGG | + | chr2_3:60077496-60077515 | None:intergenic | 25.0% |
!! | CCTATGAACTTTAATTCTTT+TGG | - | chr2_3:60077493-60077512 | Msa0303040:CDS | 25.0% |
!! | ATGAACTTTAATTCTTTTGG+AGG | - | chr2_3:60077496-60077515 | Msa0303040:CDS | 25.0% |
!! | CTTTTTAGATTTCATTGTCT+TGG | - | chr2_3:60077836-60077855 | Msa0303040:intron | 25.0% |
! | GCTATGAATATATCAATGTA+GGG | - | chr2_3:60077998-60078017 | Msa0303040:intron | 25.0% |
!! | GATTTTGTCAAATCTACAAT+AGG | - | chr2_3:60078023-60078042 | Msa0303040:five_prime_UTR | 25.0% |
!! | TGATTGCTTAGTGTTGTTTA+GGG | - | chr2_3:60074530-60074549 | Msa0303040:CDS | 30.0% |
AATGGAAAAGGACAAATCAT+TGG | - | chr2_3:60074566-60074585 | Msa0303040:CDS | 30.0% | |
ATGGAAAAGGACAAATCATT+GGG | - | chr2_3:60074567-60074586 | Msa0303040:CDS | 30.0% | |
CTATCAAAGCTAATATCATC+CGG | + | chr2_3:60074816-60074835 | None:intergenic | 30.0% | |
! | AGCAACGTCTAATTTTCAAA+TGG | - | chr2_3:60074941-60074960 | Msa0303040:intron | 30.0% |
! | GCAACGTCTAATTTTCAAAT+GGG | - | chr2_3:60074942-60074961 | Msa0303040:intron | 30.0% |
! | TCTAATTTTCAAATGGGTGA+GGG | - | chr2_3:60074948-60074967 | Msa0303040:intron | 30.0% |
!!! | TGACATTGCTTTTTTGGAAT+CGG | + | chr2_3:60075177-60075196 | None:intergenic | 30.0% |
TTCTCTTTCACTATCATTTC+GGG | - | chr2_3:60075559-60075578 | Msa0303040:intron | 30.0% | |
! | TTCGGGATAATTTTATTCAC+TGG | - | chr2_3:60075576-60075595 | Msa0303040:intron | 30.0% |
CATGTTTAGCAAAACTATTG+AGG | - | chr2_3:60075626-60075645 | Msa0303040:intron | 30.0% | |
! | TGTTATTGTGGTTCATGTTT+TGG | + | chr2_3:60075833-60075852 | None:intergenic | 30.0% |
! | GCAAAATATTGTAGGTTTTG+TGG | - | chr2_3:60075870-60075889 | Msa0303040:intron | 30.0% |
TGTGGCATACAAAATATTGT+AGG | - | chr2_3:60075888-60075907 | Msa0303040:intron | 30.0% | |
GGTATACTTTGCAATTGATA+AGG | - | chr2_3:60075947-60075966 | Msa0303040:intron | 30.0% | |
ATACTTTGCAATTGATAAGG+AGG | - | chr2_3:60075950-60075969 | Msa0303040:intron | 30.0% | |
! | TTGTTGTTGTTGTTGTTCTA+AGG | - | chr2_3:60076016-60076035 | Msa0303040:intron | 30.0% |
ACTGAAAGAAAATGTTGGAA+TGG | - | chr2_3:60076042-60076061 | Msa0303040:intron | 30.0% | |
AGTTAATCTTACCTAGCATT+TGG | + | chr2_3:60076128-60076147 | None:intergenic | 30.0% | |
TAACTACAATAGACCCATAA+TGG | - | chr2_3:60076143-60076162 | Msa0303040:intron | 30.0% | |
AACTACAATAGACCCATAAT+GGG | - | chr2_3:60076144-60076163 | Msa0303040:intron | 30.0% | |
TACTTCCATGATAACATCTA+GGG | + | chr2_3:60076180-60076199 | None:intergenic | 30.0% | |
!!! | GTTGCGTTTTATTTACTTGA+AGG | - | chr2_3:60076215-60076234 | Msa0303040:intron | 30.0% |
AATATATGGCATTATCTCCT+GGG | - | chr2_3:60076502-60076521 | Msa0303040:intron | 30.0% | |
TTTGCTTTATCTATTGCACT+TGG | - | chr2_3:60076530-60076549 | Msa0303040:intron | 30.0% | |
! | TTTCTATCTCTTTTGTGGTT+TGG | - | chr2_3:60076589-60076608 | Msa0303040:intron | 30.0% |
! | TTCTATCTCTTTTGTGGTTT+GGG | - | chr2_3:60076590-60076609 | Msa0303040:intron | 30.0% |
TGCTTATATTTGTGTGTAAC+AGG | - | chr2_3:60076642-60076661 | Msa0303040:intron | 30.0% | |
TATTTGTGTGTAACAGGATA+TGG | - | chr2_3:60076648-60076667 | Msa0303040:intron | 30.0% | |
ATTTGTGTGTAACAGGATAT+GGG | - | chr2_3:60076649-60076668 | Msa0303040:intron | 30.0% | |
CTGGTTTAAAAGCTAATAGT+AGG | - | chr2_3:60076862-60076881 | Msa0303040:intron | 30.0% | |
AATTGCAAGGATATTACACA+CGG | + | chr2_3:60077123-60077142 | None:intergenic | 30.0% | |
TATAAGCTTGAGAATATCCA+AGG | - | chr2_3:60077322-60077341 | Msa0303040:CDS | 30.0% | |
TTTAAATGACGCGTTAAAAG+AGG | - | chr2_3:60077417-60077436 | Msa0303040:CDS | 30.0% | |
!! | AACTTTAATTCTTTTGGAGG+AGG | - | chr2_3:60077499-60077518 | Msa0303040:CDS | 30.0% |
!! | ACTTTAATTCTTTTGGAGGA+GGG | - | chr2_3:60077500-60077519 | Msa0303040:CDS | 30.0% |
TCTGATGAAGGATTATCTTT+GGG | + | chr2_3:60077763-60077782 | None:intergenic | 30.0% | |
ATCTGATGAAGGATTATCTT+TGG | + | chr2_3:60077764-60077783 | None:intergenic | 30.0% | |
TTCATCAGATGTAAATCCTT+CGG | - | chr2_3:60077774-60077793 | Msa0303040:intron | 30.0% | |
GGCTATGAATATATCAATGT+AGG | - | chr2_3:60077997-60078016 | Msa0303040:intron | 30.0% | |
! | GTTTACTTTGTTGATTGAGA+TGG | - | chr2_3:60078049-60078068 | Msa0303040:five_prime_UTR | 30.0% |
! | TTTGTTGATTGAGATGGTAT+AGG | - | chr2_3:60078055-60078074 | Msa0303040:five_prime_UTR | 30.0% |
! | TTGTTGATTGAGATGGTATA+GGG | - | chr2_3:60078056-60078075 | Msa0303040:five_prime_UTR | 30.0% |
GAGAAAGGGGAAATGAATAT+CGG | + | chr2_3:60074222-60074241 | None:intergenic | 35.0% | |
ACCCTAGAAATAGAGAGAAA+GGG | + | chr2_3:60074236-60074255 | None:intergenic | 35.0% | |
AACCCTAGAAATAGAGAGAA+AGG | + | chr2_3:60074237-60074256 | None:intergenic | 35.0% | |
TGAAGTGATTGAACTGGATT+AGG | - | chr2_3:60074502-60074521 | Msa0303040:CDS | 35.0% | |
GAAGTGATTGAACTGGATTA+GGG | - | chr2_3:60074503-60074522 | Msa0303040:CDS | 35.0% | |
! | AAGTGATTGAACTGGATTAG+GGG | - | chr2_3:60074504-60074523 | Msa0303040:CDS | 35.0% |
!! | GTGATTGCTTAGTGTTGTTT+AGG | - | chr2_3:60074529-60074548 | Msa0303040:CDS | 35.0% |
!! | ATTAGCTTTGATAGTGACCT+CGG | - | chr2_3:60074822-60074841 | Msa0303040:intron | 35.0% |
CTTATCCATATCAAGGTACA+TGG | + | chr2_3:60074907-60074926 | None:intergenic | 35.0% | |
! | GTCTAATTTTCAAATGGGTG+AGG | - | chr2_3:60074947-60074966 | Msa0303040:intron | 35.0% |
! | CTAATTTTCAAATGGGTGAG+GGG | - | chr2_3:60074949-60074968 | Msa0303040:intron | 35.0% |
CAAACCTGAGATGTTAATCT+CGG | - | chr2_3:60075130-60075149 | Msa0303040:intron | 35.0% | |
AAACCTGAGATGTTAATCTC+GGG | - | chr2_3:60075131-60075150 | Msa0303040:intron | 35.0% | |
! | TAATACCTTTTTGCACGCTT+GGG | + | chr2_3:60075233-60075252 | None:intergenic | 35.0% |
! | ATAATACCTTTTTGCACGCT+TGG | + | chr2_3:60075234-60075253 | None:intergenic | 35.0% |
! | CATGTTGGTGAAAAAAAAGG+TGG | + | chr2_3:60075500-60075519 | None:intergenic | 35.0% |
AATGACAAAACAGAGCTTTG+AGG | + | chr2_3:60075532-60075551 | None:intergenic | 35.0% | |
! | TCAAAGCTCTGTTTTGTCAT+TGG | - | chr2_3:60075531-60075550 | Msa0303040:intron | 35.0% |
TTTAGCAAAACTATTGAGGC+AGG | - | chr2_3:60075630-60075649 | Msa0303040:intron | 35.0% | |
!! | TTTGAGACAGGATAGGATTT+TGG | - | chr2_3:60075687-60075706 | Msa0303040:intron | 35.0% |
TGTGGCATGCAAAATATTGT+AGG | - | chr2_3:60075862-60075881 | Msa0303040:intron | 35.0% | |
!!! | GATTTTTCTAAGGTCTACCA+AGG | - | chr2_3:60075988-60076007 | Msa0303040:intron | 35.0% |
GGTCTACTGAAAGAAAATGT+TGG | - | chr2_3:60076037-60076056 | Msa0303040:intron | 35.0% | |
! | GCAAATGTTTTCCAAATGCT+AGG | - | chr2_3:60076114-60076133 | Msa0303040:intron | 35.0% |
CTACTTCCATGATAACATCT+AGG | + | chr2_3:60076181-60076200 | None:intergenic | 35.0% | |
CAAGTAAATAAAACGCAACC+TGG | + | chr2_3:60076214-60076233 | None:intergenic | 35.0% | |
!!! | TCTAAAACTGTTTTTGGGTG+TGG | - | chr2_3:60076333-60076352 | Msa0303040:intron | 35.0% |
!!! | GGCCCAATAATGAGATTTTT+TGG | + | chr2_3:60076367-60076386 | None:intergenic | 35.0% |
!! | GGTATTGATGAAATACTGCT+CGG | - | chr2_3:60076413-60076432 | Msa0303040:intron | 35.0% |
AGTTCCAGCTCATCAATATA+TGG | - | chr2_3:60076488-60076507 | Msa0303040:intron | 35.0% | |
AATGCCATATATTGATGAGC+TGG | + | chr2_3:60076495-60076514 | None:intergenic | 35.0% | |
CAATATATGGCATTATCTCC+TGG | - | chr2_3:60076501-60076520 | Msa0303040:intron | 35.0% | |
CCAGCAAGTGAAATAGTAAT+TGG | + | chr2_3:60076846-60076865 | None:intergenic | 35.0% | |
CCAATTACTATTTCACTTGC+TGG | - | chr2_3:60076843-60076862 | Msa0303040:intron | 35.0% | |
TATGAACAGAGAGATACAAG+TGG | - | chr2_3:60076910-60076929 | Msa0303040:intron | 35.0% | |
ATGAACAGAGAGATACAAGT+GGG | - | chr2_3:60076911-60076930 | Msa0303040:intron | 35.0% | |
!! | TGGCTGCAAAATTTTGTTGT+TGG | - | chr2_3:60077228-60077247 | Msa0303040:CDS | 35.0% |
!!! | GGCTGCAAAATTTTGTTGTT+GGG | - | chr2_3:60077229-60077248 | Msa0303040:CDS | 35.0% |
!!! | GCAAAATTTTGTTGTTGGGT+TGG | - | chr2_3:60077233-60077252 | Msa0303040:CDS | 35.0% |
TGCATGGCATGGTTATTATT+GGG | + | chr2_3:60077538-60077557 | None:intergenic | 35.0% | |
TTTGTTGCTGCTGTATTTGT+TGG | + | chr2_3:60077651-60077670 | None:intergenic | 35.0% | |
GAACAACAACAACAACAATC+AGG | - | chr2_3:60077703-60077722 | Msa0303040:intron | 35.0% | |
CTGATGAAGGATTATCTTTG+GGG | + | chr2_3:60077762-60077781 | None:intergenic | 35.0% | |
GAAGGATTTACATCTGATGA+AGG | + | chr2_3:60077775-60077794 | None:intergenic | 35.0% | |
TTCTTGGCATCTCAGTTAAT+TGG | - | chr2_3:60077976-60077995 | Msa0303040:intron | 35.0% | |
! | GTTTGATTCGTTGACGAGAA+TGG | - | chr2_3:60074105-60074124 | Msa0303040:three_prime_UTR | 40.0% |
! | TCCCCTTTCTCTCTATTTCT+AGG | - | chr2_3:60074231-60074250 | Msa0303040:three_prime_UTR | 40.0% |
CCCTAGAAATAGAGAGAAAG+GGG | + | chr2_3:60074235-60074254 | None:intergenic | 40.0% | |
!! | CCCCTTTCTCTCTATTTCTA+GGG | - | chr2_3:60074232-60074251 | Msa0303040:three_prime_UTR | 40.0% |
!!! | GGGTTTTGAAGTGATTGAAC+TGG | - | chr2_3:60074496-60074515 | Msa0303040:CDS | 40.0% |
!! | CTTAGTGTTGTTTAGGGTCA+AGG | - | chr2_3:60074536-60074555 | Msa0303040:CDS | 40.0% |
CAAGGAATCGTGAATGGAAA+AGG | - | chr2_3:60074554-60074573 | Msa0303040:CDS | 40.0% | |
AAGGACAAATCATTGGGTCT+TGG | - | chr2_3:60074573-60074592 | Msa0303040:CDS | 40.0% | |
ACATTGAAACCACTTCCAGT+TGG | + | chr2_3:60074642-60074661 | None:intergenic | 40.0% | |
GATAATCCTCCGAGAAATAG+AGG | - | chr2_3:60074756-60074775 | Msa0303040:intron | 40.0% | |
! | CGTCTATGACCTCTATTTCT+CGG | + | chr2_3:60074768-60074787 | None:intergenic | 40.0% |
AAAGCTAATATCATCCGGCA+AGG | + | chr2_3:60074811-60074830 | None:intergenic | 40.0% | |
CATGGACAACAAATCTTCCT+CGG | + | chr2_3:60074889-60074908 | None:intergenic | 40.0% | |
GTTGTCCATGTACCTTGATA+TGG | - | chr2_3:60074899-60074918 | Msa0303040:intron | 40.0% | |
! | TACCTCTTCTGGGGAAAATA+TGG | - | chr2_3:60075034-60075053 | Msa0303040:intron | 40.0% |
CAGTCGGTACTACAAATGAA+AGG | - | chr2_3:60075057-60075076 | Msa0303040:intron | 40.0% | |
! | AATACCTTTTTGCACGCTTG+GGG | + | chr2_3:60075232-60075251 | None:intergenic | 40.0% |
AGTCAATAATACAGACCGAG+TGG | + | chr2_3:60075476-60075495 | None:intergenic | 40.0% | |
! | CGGCATGTTGGTGAAAAAAA+AGG | + | chr2_3:60075503-60075522 | None:intergenic | 40.0% |
!! | ACAGAGCTTTGAGGAATTCA+CGG | + | chr2_3:60075523-60075542 | None:intergenic | 40.0% |
CAAAACTATTGAGGCAGGAT+AGG | - | chr2_3:60075635-60075654 | Msa0303040:intron | 40.0% | |
!! | ATGTATTGGGTCTTTGAGAC+AGG | - | chr2_3:60075675-60075694 | Msa0303040:intron | 40.0% |
CAACAACAACAACTAAGCCT+TGG | + | chr2_3:60076008-60076027 | None:intergenic | 40.0% | |
CCATGATAACATCTAGGGAA+GGG | + | chr2_3:60076175-60076194 | None:intergenic | 40.0% | |
TCCATGATAACATCTAGGGA+AGG | + | chr2_3:60076176-60076195 | None:intergenic | 40.0% | |
! | ACACACTCACACCATTGTTT+TGG | - | chr2_3:60076287-60076306 | Msa0303040:intron | 40.0% |
GAAATACTGCTCGGATAGAA+TGG | - | chr2_3:60076422-60076441 | Msa0303040:intron | 40.0% | |
ATAGAATGGCCTTCCTTAGA+GGG | - | chr2_3:60076436-60076455 | Msa0303040:intron | 40.0% | |
AGATAAAGCAAAATAGGCCC+AGG | + | chr2_3:60076522-60076541 | None:intergenic | 40.0% | |
TAAGCAGTGTTTGTCGATGT+TGG | + | chr2_3:60076628-60076647 | None:intergenic | 40.0% | |
GTAACAGGATATGGGCAAAT+AGG | - | chr2_3:60076657-60076676 | Msa0303040:intron | 40.0% | |
GCTATATTGCTGAGCTTGAA+AGG | - | chr2_3:60076714-60076733 | Msa0303040:intron | 40.0% | |
! | GAAAGTGCAGACATTGCAAA+CGG | - | chr2_3:60076736-60076755 | Msa0303040:intron | 40.0% |
TGCACAGTTAACTCTCTTAC+AGG | - | chr2_3:60076775-60076794 | Msa0303040:intron | 40.0% | |
AGCAGAAAAGTAGTAGCTTC+AGG | + | chr2_3:60077033-60077052 | None:intergenic | 40.0% | |
AAGCTTGAGAATATCCAAGG+TGG | - | chr2_3:60077325-60077344 | Msa0303040:CDS | 40.0% | |
TCAAGATAAACTGTCCACCT+TGG | + | chr2_3:60077342-60077361 | None:intergenic | 40.0% | |
! | ACGCGTCATTTAAAGCTACA+AGG | + | chr2_3:60077411-60077430 | None:intergenic | 40.0% |
!! | ACGCATTTGAAAGTACTGAC+TGG | - | chr2_3:60077445-60077464 | Msa0303040:CDS | 40.0% |
!! | CGCATTTGAAAGTACTGACT+GGG | - | chr2_3:60077446-60077465 | Msa0303040:CDS | 40.0% |
AAGTTCATAGGTCCTCCATT+TGG | + | chr2_3:60077484-60077503 | None:intergenic | 40.0% | |
GTGCATGGCATGGTTATTAT+TGG | + | chr2_3:60077539-60077558 | None:intergenic | 40.0% | |
!! | GCTGTTTCTGAGGATGAATT+TGG | + | chr2_3:60077594-60077613 | None:intergenic | 40.0% |
CGGAATGAAGAGAGAGAAAG+TGG | + | chr2_3:60074202-60074221 | None:intergenic | 45.0% | |
GTAGATCAGGGGAGATAGAT+TGG | + | chr2_3:60074273-60074292 | None:intergenic | 45.0% | |
TAGGGTCAAGGAATCGTGAA+TGG | - | chr2_3:60074548-60074567 | Msa0303040:CDS | 45.0% | |
GACAAATCATTGGGTCTTGG+CGG | - | chr2_3:60074576-60074595 | Msa0303040:CDS | 45.0% | |
TATCCGGGTTATTCACCAAC+TGG | - | chr2_3:60074624-60074643 | Msa0303040:CDS | 45.0% | |
!! | CTTCCAGTTGGTGAATAACC+CGG | + | chr2_3:60074630-60074649 | None:intergenic | 45.0% |
GGTTATTCACCAACTGGAAG+TGG | - | chr2_3:60074630-60074649 | Msa0303040:CDS | 45.0% | |
AAAGCCACTAGAATCTGAGC+TGG | + | chr2_3:60074712-60074731 | None:intergenic | 45.0% | |
! | CTATGACCTCTATTTCTCGG+AGG | + | chr2_3:60074765-60074784 | None:intergenic | 45.0% |
TTCCGAGATTCTTACCTTGC+CGG | - | chr2_3:60074794-60074813 | Msa0303040:intron | 45.0% | |
ATCCGGCAAGGTAAGAATCT+CGG | + | chr2_3:60074799-60074818 | None:intergenic | 45.0% | |
TCGGTATCATCAGAGAACGA+CGG | + | chr2_3:60074870-60074889 | None:intergenic | 45.0% | |
! | TGCCATATTTTCCCCAGAAG+AGG | + | chr2_3:60075039-60075058 | None:intergenic | 45.0% |
TCTGGGGAAAATATGGCAGT+CGG | - | chr2_3:60075041-60075060 | Msa0303040:intron | 45.0% | |
! | GATTGTTGTTGACCCATCCA+TGG | + | chr2_3:60075111-60075130 | None:intergenic | 45.0% |
GAACCCGAGATTAACATCTC+AGG | + | chr2_3:60075137-60075156 | None:intergenic | 45.0% | |
!!! | GGCTGCTGACATTGCTTTTT+TGG | + | chr2_3:60075183-60075202 | None:intergenic | 45.0% |
ATCCTGACGTGTATTCCACT+CGG | - | chr2_3:60075458-60075477 | Msa0303040:CDS | 45.0% | |
TTGAGGAATTCACGGCATGT+TGG | + | chr2_3:60075515-60075534 | None:intergenic | 45.0% | |
!! | TTGGGTCTTTGAGACAGGAT+AGG | - | chr2_3:60075680-60075699 | Msa0303040:intron | 45.0% |
GATAACATCTAGGGAAGGGT+TGG | + | chr2_3:60076171-60076190 | None:intergenic | 45.0% | |
CCCTTCCCTAGATGTTATCA+TGG | - | chr2_3:60076172-60076191 | Msa0303040:intron | 45.0% | |
ATCAATACCTGCTGCAGTGT+GGG | + | chr2_3:60076402-60076421 | None:intergenic | 45.0% | |
GATAGAATGGCCTTCCTTAG+AGG | - | chr2_3:60076435-60076454 | Msa0303040:intron | 45.0% | |
TGTATAGACTGTGCCCTCTA+AGG | + | chr2_3:60076452-60076471 | None:intergenic | 45.0% | |
!! | CAAGTGAACTTGTTGCTCCA+TGG | + | chr2_3:60076977-60076996 | None:intergenic | 45.0% |
CAACAAGTTCACTTGCAGGA+TGG | - | chr2_3:60076982-60077001 | Msa0303040:CDS | 45.0% | |
GTGCATGTTTAGTGTGAAGC+TGG | - | chr2_3:60077208-60077227 | Msa0303040:CDS | 45.0% | |
TTCATAGGTCCTCCATTTGG+CGG | + | chr2_3:60077481-60077500 | None:intergenic | 45.0% | |
!! | TGATGTTGCTGCTGTTTCTG+AGG | + | chr2_3:60077604-60077623 | None:intergenic | 45.0% |
!! | GAAGGATTATCTTTGGGGCA+TGG | + | chr2_3:60077757-60077776 | None:intergenic | 45.0% |
CGCAGTTTCTCAACAATCCT+TGG | + | chr2_3:60077803-60077822 | None:intergenic | 45.0% | |
!! | TTGTCTTGGTGTCCTAGTGT+TGG | - | chr2_3:60077850-60077869 | Msa0303040:intron | 45.0% |
TCTATCTCCCCTGATCTACG+CGG | - | chr2_3:60074274-60074293 | Msa0303040:three_prime_UTR | 50.0% | |
AAATCATTGGGTCTTGGCGG+TGG | - | chr2_3:60074579-60074598 | Msa0303040:CDS | 50.0% | |
ACCTCCATCAGGACGTTATC+CGG | - | chr2_3:60074608-60074627 | Msa0303040:CDS | 50.0% | |
TAACCCGGATAACGTCCTGA+TGG | + | chr2_3:60074615-60074634 | None:intergenic | 50.0% | |
! | CTAGAATCTGAGCTGGTTCC+AGG | + | chr2_3:60074705-60074724 | None:intergenic | 50.0% |
GGAACCAGCTCAGATTCTAG+TGG | - | chr2_3:60074705-60074724 | Msa0303040:CDS | 50.0% | |
! | GATAGTGACCTCGGTGTAGT+TGG | - | chr2_3:60074831-60074850 | Msa0303040:intron | 50.0% |
GTCGTTCTCTGATGATACCG+AGG | - | chr2_3:60074869-60074888 | Msa0303040:intron | 50.0% | |
! | CTGTGCTGGTGTCTGATTCT+GGG | + | chr2_3:60075083-60075102 | None:intergenic | 50.0% |
TTGTTGACCCATCCATGGAC+TGG | + | chr2_3:60075106-60075125 | None:intergenic | 50.0% | |
CAAGGCAAGTTCTGCAAGCT+TGG | + | chr2_3:60075204-60075223 | None:intergenic | 50.0% | |
TTGACCCCAAGCGTGCAAAA+AGG | - | chr2_3:60075225-60075244 | Msa0303040:CDS | 50.0% | |
GGAAGGGTTGGACCCATTAT+GGG | + | chr2_3:60076159-60076178 | None:intergenic | 50.0% | |
! | GGAAGTAGCTCTATAGCACC+AGG | - | chr2_3:60076193-60076212 | Msa0303040:intron | 50.0% |
CAGTGTGGGAAGGGATCAAA+AGG | + | chr2_3:60076388-60076407 | None:intergenic | 50.0% | |
CATCAATACCTGCTGCAGTG+TGG | + | chr2_3:60076403-60076422 | None:intergenic | 50.0% | |
! | TAGACTGTGCCCTCTAAGGA+AGG | + | chr2_3:60076448-60076467 | None:intergenic | 50.0% |
ATGGGCAAATAGGCAGTCTG+CGG | - | chr2_3:60076667-60076686 | Msa0303040:intron | 50.0% | |
CTGCGGCAAGGTCAAAAGAA+AGG | - | chr2_3:60076684-60076703 | Msa0303040:intron | 50.0% | |
AGAACAGTGAGCTGAAGCTG+CGG | - | chr2_3:60076944-60076963 | Msa0303040:CDS | 50.0% | |
GGAGCAACAAGTTCACTTGC+AGG | - | chr2_3:60076978-60076997 | Msa0303040:CDS | 50.0% | |
! | CCAAAAGAGTGTGCATGGCA+TGG | + | chr2_3:60077549-60077568 | None:intergenic | 50.0% |
! | CCATGCCATGCACACTCTTT+TGG | - | chr2_3:60077546-60077565 | Msa0303040:CDS | 50.0% |
! | TGCAGCCAAAAGAGTGTGCA+TGG | + | chr2_3:60077554-60077573 | None:intergenic | 50.0% |
!! | GGATTATCTTTGGGGCATGG+AGG | + | chr2_3:60077754-60077773 | None:intergenic | 50.0% |
TGTAAATCCTTCGGCAGCCA+AGG | - | chr2_3:60077783-60077802 | Msa0303040:intron | 50.0% | |
!! | CTTGGTGTCCTAGTGTTGGT+AGG | - | chr2_3:60077854-60077873 | Msa0303040:intron | 50.0% |
! | GGTGGTTTTCCACCTCCATC+AGG | - | chr2_3:60074597-60074616 | Msa0303040:CDS | 55.0% |
GGATAACGTCCTGATGGAGG+TGG | + | chr2_3:60074609-60074628 | None:intergenic | 55.0% | |
CCTCCATCAGGACGTTATCC+GGG | - | chr2_3:60074609-60074628 | Msa0303040:CDS | 55.0% | |
! | AGTGACCTCGGTGTAGTTGG+TGG | - | chr2_3:60074834-60074853 | Msa0303040:intron | 55.0% |
!! | GGTGTAGTTGGTGGTGCTGA+TGG | - | chr2_3:60074843-60074862 | Msa0303040:intron | 55.0% |
GTCTAATGCTGCCGGAGCAT+CGG | - | chr2_3:60074971-60074990 | Msa0303040:intron | 55.0% | |
! | TCTAATGCTGCCGGAGCATC+GGG | - | chr2_3:60074972-60074991 | Msa0303040:intron | 55.0% |
ATCGGGTTTGGCGCCAATGT+CGG | - | chr2_3:60074989-60075008 | Msa0303040:intron | 55.0% | |
GTTTGGCGCCAATGTCGGTA+GGG | - | chr2_3:60074994-60075013 | Msa0303040:intron | 55.0% | |
GATGTCTGCCCTACCGACAT+TGG | + | chr2_3:60075005-60075024 | None:intergenic | 55.0% | |
ATGTCGGTAGGGCAGACATC+AGG | - | chr2_3:60075005-60075024 | Msa0303040:intron | 55.0% | |
!! | TCAGGAGGAGGTACCTCTTC+TGG | - | chr2_3:60075023-60075042 | Msa0303040:intron | 55.0% |
!! | CAGGAGGAGGTACCTCTTCT+GGG | - | chr2_3:60075024-60075043 | Msa0303040:intron | 55.0% |
!! | AGGAGGAGGTACCTCTTCTG+GGG | - | chr2_3:60075025-60075044 | Msa0303040:intron | 55.0% |
! | GCTGTGCTGGTGTCTGATTC+TGG | + | chr2_3:60075084-60075103 | None:intergenic | 55.0% |
AGCACAGCCAGTCCATGGAT+GGG | - | chr2_3:60075096-60075115 | Msa0303040:intron | 55.0% | |
TGCACGCTTGGGGTCAATCA+AGG | + | chr2_3:60075222-60075241 | None:intergenic | 55.0% | |
GACCGAGTGGAATACACGTC+AGG | + | chr2_3:60075463-60075482 | None:intergenic | 55.0% | |
GGGAAGGGTTGGACCCATTA+TGG | + | chr2_3:60076160-60076179 | None:intergenic | 55.0% | |
TACCTGCTGCAGTGTGGGAA+GGG | + | chr2_3:60076397-60076416 | None:intergenic | 55.0% | |
ATACCTGCTGCAGTGTGGGA+AGG | + | chr2_3:60076398-60076417 | None:intergenic | 55.0% | |
CAAATAGGCAGTCTGCGGCA+AGG | - | chr2_3:60076672-60076691 | Msa0303040:intron | 55.0% | |
GAAGCTGCGGTTGCAAACCA+TGG | - | chr2_3:60076957-60076976 | Msa0303040:CDS | 55.0% | |
CAAGCTATGCCGCCAAATGG+AGG | - | chr2_3:60077469-60077488 | Msa0303040:CDS | 55.0% | |
ACAAATGCAGCAGCAGCAGC+AGG | - | chr2_3:60077681-60077700 | Msa0303040:intron | 55.0% | |
CAACAATCCTTGGCTGCCGA+AGG | + | chr2_3:60077793-60077812 | None:intergenic | 55.0% | |
GGCTGCAACCTACCAACACT+AGG | + | chr2_3:60077865-60077884 | None:intergenic | 55.0% | |
CTTTGCGCCGCGTAGATCAG+GGG | + | chr2_3:60074284-60074303 | None:intergenic | 60.0% | |
CCTTTGCGCCGCGTAGATCA+GGG | + | chr2_3:60074285-60074304 | None:intergenic | 60.0% | |
ACCTTTGCGCCGCGTAGATC+AGG | + | chr2_3:60074286-60074305 | None:intergenic | 60.0% | |
CCCGGATAACGTCCTGATGG+AGG | + | chr2_3:60074612-60074631 | None:intergenic | 60.0% | |
! | GGCGGATACGACGATGATGG+GGG | + | chr2_3:60074675-60074694 | None:intergenic | 60.0% |
CGGCGGATACGACGATGATG+GGG | + | chr2_3:60074676-60074695 | None:intergenic | 60.0% | |
GCGGCGGATACGACGATGAT+GGG | + | chr2_3:60074677-60074696 | None:intergenic | 60.0% | |
AGCGGCGGATACGACGATGA+TGG | + | chr2_3:60074678-60074697 | None:intergenic | 60.0% | |
! | GAGCTGGTTCCAGGAGCAAG+CGG | + | chr2_3:60074696-60074715 | None:intergenic | 60.0% |
CAGCACCACCAACTACACCG+AGG | + | chr2_3:60074842-60074861 | None:intergenic | 60.0% | |
GGTGAGGGGTCTAATGCTGC+CGG | - | chr2_3:60074963-60074982 | Msa0303040:intron | 60.0% | |
GGTTTGGCGCCAATGTCGGT+AGG | - | chr2_3:60074993-60075012 | Msa0303040:intron | 60.0% | |
TCGGTAGGGCAGACATCAGG+AGG | - | chr2_3:60075008-60075027 | Msa0303040:intron | 60.0% | |
GTAGGGCAGACATCAGGAGG+AGG | - | chr2_3:60075011-60075030 | Msa0303040:intron | 60.0% | |
ACACCAGCACAGCCAGTCCA+TGG | - | chr2_3:60075091-60075110 | Msa0303040:intron | 60.0% | |
!! | CATCCATGGACTGGCTGTGC+TGG | + | chr2_3:60075097-60075116 | None:intergenic | 60.0% |
CAGCACAGCCAGTCCATGGA+TGG | - | chr2_3:60075095-60075114 | Msa0303040:intron | 60.0% | |
ATCCCTTCCCACACTGCAGC+AGG | - | chr2_3:60076392-60076411 | Msa0303040:intron | 60.0% | |
GGGCAAGCTATGCCGCCAAA+TGG | - | chr2_3:60077466-60077485 | Msa0303040:CDS | 60.0% | |
CCCTGATCTACGCGGCGCAA+AGG | - | chr2_3:60074282-60074301 | Msa0303040:three_prime_UTR | 65.0% | |
TCGTATCCGCCGCTTGCTCC+TGG | - | chr2_3:60074684-60074703 | Msa0303040:CDS | 65.0% | |
CTGGTTCCAGGAGCAAGCGG+CGG | + | chr2_3:60074693-60074712 | None:intergenic | 65.0% | |
!! | TGCTGCCGGAGCATCGGGTT+TGG | - | chr2_3:60074977-60074996 | Msa0303040:intron | 65.0% |
TGGCGCCAAACCCGATGCTC+CGG | + | chr2_3:60074985-60075004 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 60074099 | 60078089 | 60074099 | ID=Msa0303040;Name=Msa0303040 |
chr2_3 | mRNA | 60074099 | 60078089 | 60074099 | ID=Msa0303040-mRNA-1;Parent=Msa0303040;Name=Msa0303040-mRNA-1;_AED=0.08;_eAED=0.08;_QI=254|1|1|1|0.6|0.5|6|276|431 |
chr2_3 | exon | 60074099 | 60074772 | 60074099 | ID=Msa0303040-mRNA-1:exon:19549;Parent=Msa0303040-mRNA-1 |
chr2_3 | exon | 60075185 | 60075269 | 60075185 | ID=Msa0303040-mRNA-1:exon:19548;Parent=Msa0303040-mRNA-1 |
chr2_3 | exon | 60075392 | 60075524 | 60075392 | ID=Msa0303040-mRNA-1:exon:19547;Parent=Msa0303040-mRNA-1 |
chr2_3 | exon | 60076942 | 60077691 | 60076942 | ID=Msa0303040-mRNA-1:exon:19546;Parent=Msa0303040-mRNA-1 |
chr2_3 | exon | 60077885 | 60077993 | 60077885 | ID=Msa0303040-mRNA-1:exon:19545;Parent=Msa0303040-mRNA-1 |
chr2_3 | exon | 60078015 | 60078089 | 60078015 | ID=Msa0303040-mRNA-1:exon:19544;Parent=Msa0303040-mRNA-1 |
chr2_3 | five_prime_UTR | 60078015 | 60078089 | 60078015 | ID=Msa0303040-mRNA-1:five_prime_utr;Parent=Msa0303040-mRNA-1 |
chr2_3 | five_prime_UTR | 60077885 | 60077993 | 60077885 | ID=Msa0303040-mRNA-1:five_prime_utr;Parent=Msa0303040-mRNA-1 |
chr2_3 | five_prime_UTR | 60077622 | 60077691 | 60077622 | ID=Msa0303040-mRNA-1:five_prime_utr;Parent=Msa0303040-mRNA-1 |
chr2_3 | CDS | 60076942 | 60077621 | 60076942 | ID=Msa0303040-mRNA-1:cds;Parent=Msa0303040-mRNA-1 |
chr2_3 | CDS | 60075392 | 60075524 | 60075392 | ID=Msa0303040-mRNA-1:cds;Parent=Msa0303040-mRNA-1 |
chr2_3 | CDS | 60075185 | 60075269 | 60075185 | ID=Msa0303040-mRNA-1:cds;Parent=Msa0303040-mRNA-1 |
chr2_3 | CDS | 60074375 | 60074772 | 60074375 | ID=Msa0303040-mRNA-1:cds;Parent=Msa0303040-mRNA-1 |
chr2_3 | three_prime_UTR | 60074099 | 60074374 | 60074099 | ID=Msa0303040-mRNA-1:three_prime_utr;Parent=Msa0303040-mRNA-1 |
Gene Sequence |
Protein sequence |