AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0303090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0303090 MtrunA17_Chr2g0329621 84.660 515 62 4 1 498 1 515 0.0 863
Msa0303090 MtrunA17_Chr5g0401081 30.568 458 260 11 48 465 43 482 2.09e-64 217
Msa0303090 MtrunA17_Chr1g0208531 23.517 489 314 14 20 467 53 522 6.83e-30 123
Msa0303090 MtrunA17_Chr3g0137351 22.407 482 287 15 44 469 67 517 1.08e-29 122
Msa0303090 MtrunA17_Chr2g0304631 21.649 485 314 15 30 469 54 517 1.39e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0303090 AT5G67550.1 24.902 510 329 11 6 480 8 498 1.03e-49 178
Msa0303090 AT2G25270.1 23.667 469 297 15 44 469 75 525 1.14e-31 128
Msa0303090 AT2G12400.1 24.547 497 308 15 37 487 63 538 1.19e-29 122
Msa0303090 AT1G71110.1 22.016 486 322 12 25 469 51 520 1.06e-25 110
Msa0303090 AT1G80540.1 19.097 487 331 13 28 463 43 517 2.91e-16 82.0
Msa0303090 AT1G80540.3 18.856 472 330 12 33 463 12 471 4.51e-16 81.3

Find 102 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTTGATTTGAAGGAATT+TGG 0.148694 2_3:+60201018 None:intergenic
GTATATATATTATATATTAA+AGG 0.199009 2_3:-60200774 Msa0303090:three_prime_UTR
ACATCACCAACAAGAATTAT+TGG 0.207437 2_3:-60203435 Msa0303090:CDS
ATGTTAGTGTAATATATATT+AGG 0.248865 2_3:+60200701 None:intergenic
TTGATATTCACTGGAGTATA+TGG 0.251671 2_3:-60203326 Msa0303090:CDS
TCGGGTTGGTAGGTATAATT+TGG 0.268119 2_3:+60201583 None:intergenic
TTGATTGCATCTAGTTAAAT+TGG 0.279468 2_3:-60204578 Msa0303090:intron
TATATATATTATATATTAAA+GGG 0.284972 2_3:-60200773 Msa0303090:three_prime_UTR
GAGCTTAAGCTGTTGTTATA+AGG 0.299992 2_3:+60201902 None:intergenic
ACAGGCTTGTTGTACTTTGC+TGG 0.301195 2_3:-60202121 Msa0303090:intron
GTATTATGCTGGCTATTCTT+TGG 0.304357 2_3:-60202089 Msa0303090:CDS
GGCTATTAACATGAGAAATA+TGG 0.305507 2_3:+60203148 None:intergenic
AAAAGTTATACACGGATTAC+TGG 0.316285 2_3:+60200875 None:intergenic
TTTAACTGCTCTTGATTTGA+AGG 0.331948 2_3:+60201011 None:intergenic
TTTGTATCTAAACAAGTAAA+AGG 0.336382 2_3:+60201363 None:intergenic
AACACAACAGAAGCATTAAA+AGG 0.338281 2_3:-60202888 Msa0303090:CDS
TGATGCTTTACTAATTCCTT+TGG 0.344919 2_3:-60203171 Msa0303090:CDS
ATTGAATGTGTATCCAAGTA+TGG 0.345176 2_3:-60201256 Msa0303090:CDS
AATTATACTCACTTCCTCTA+AGG 0.347425 2_3:+60200727 None:intergenic
GTTATTTCAATAGACCTTAG+AGG 0.363692 2_3:-60200741 Msa0303090:three_prime_UTR
ATCTTAGCATATTTCTTCAT+AGG 0.370043 2_3:+60201168 None:intergenic
TACACTCCAATAATTCTTGT+TGG 0.372190 2_3:+60203429 None:intergenic
CCTATTCGTATAGTATTATC+TGG 0.379970 2_3:+60201553 None:intergenic
GCAACAGGGCTAGTTCTTGT+AGG 0.391851 2_3:-60202993 Msa0303090:CDS
TATTTAGTTCATAAGAATAT+AGG 0.395510 2_3:-60200935 Msa0303090:three_prime_UTR
CAGCTTGTGCTTCAATTTGT+GGG 0.405144 2_3:+60204492 None:intergenic
AGTATTATCTGGACAATTCT+CGG 0.408061 2_3:+60201564 None:intergenic
CATACAAAATTCCACATAGA+AGG 0.413531 2_3:+60203282 None:intergenic
AGTCATGAACATTGTTATCA+TGG 0.416314 2_3:-60201075 Msa0303090:CDS
GGAGTATATGGATATGCAAT+TGG 0.424393 2_3:-60203314 Msa0303090:CDS
TTGTAGTCTTTGATATTCAC+TGG 0.425080 2_3:-60203335 Msa0303090:intron
TCTAACAAATGTTCCATACT+TGG 0.426331 2_3:+60201243 None:intergenic
CCAGATAATACTATACGAAT+AGG 0.430631 2_3:-60201553 Msa0303090:CDS
TGTTAGTGTAATATATATTA+GGG 0.433042 2_3:+60200702 None:intergenic
AAATTGTGACATGGTTCAGC+TGG 0.434571 2_3:-60204869 None:intergenic
ATTCAGTATACCTTATTTAG+TGG 0.439839 2_3:-60200841 Msa0303090:three_prime_UTR
AAGAATATAGGAACCGGTAT+TGG 0.441138 2_3:-60200923 Msa0303090:three_prime_UTR
CATTGTTATCATGGTTCAGA+TGG 0.453877 2_3:-60201066 Msa0303090:CDS
TGGGTAGGAATGGTGTTCCT+TGG 0.455580 2_3:-60201141 Msa0303090:CDS
TATAATAGATACCAAGCCTT+TGG 0.456475 2_3:+60204535 None:intergenic
GATTTGTGTAGAGTTGCAAC+AGG 0.456871 2_3:-60203008 Msa0303090:intron
ACTTGTTTAGATACAAATGA+TGG 0.459405 2_3:-60201357 Msa0303090:CDS
TTTCTGGTGTACTACGGTTA+AGG 0.464706 2_3:-60202261 Msa0303090:CDS
GGTGTTCCTTGGAGTGATCA+TGG 0.465850 2_3:-60201130 Msa0303090:CDS
GTTCATAAGAATATAGGAAC+CGG 0.468801 2_3:-60200929 Msa0303090:three_prime_UTR
ACAGCTTGTGCTTCAATTTG+TGG 0.469456 2_3:+60204491 None:intergenic
GCACTAAATTCAGATAGAAC+TGG 0.472426 2_3:+60201845 None:intergenic
TATGAAGAAATATGCTAAGA+TGG 0.477004 2_3:-60201166 Msa0303090:CDS
TCACCTGGTGATTCTGCTGC+AGG 0.478707 2_3:-60204467 Msa0303090:intron
TAATTTGGTGGCGCTGAGAA+AGG 0.479612 2_3:+60201598 None:intergenic
TTCAGTATACCTTATTTAGT+GGG 0.484635 2_3:-60200840 Msa0303090:three_prime_UTR
GTATTATCTGGACAATTCTC+GGG 0.490684 2_3:+60201565 None:intergenic
AGGCATGGAGAGTAACTTGA+TGG 0.496619 2_3:-60202868 Msa0303090:CDS
GTTCTATCTGAATTTAGTGC+TGG 0.497245 2_3:-60201842 Msa0303090:CDS
TTGCATCTAGTTAAATTGGC+AGG 0.500388 2_3:-60204574 Msa0303090:intron
CAACAGGGCTAGTTCTTGTA+GGG 0.506049 2_3:-60202992 Msa0303090:CDS
GGTTGTTGACAGTATTATGC+TGG 0.511614 2_3:-60202100 Msa0303090:CDS
TGAGCAATTCTTGACATGGA+AGG 0.514152 2_3:+60201876 None:intergenic
TATCTATAATCTTGTTAATG+AGG 0.517870 2_3:-60201819 Msa0303090:intron
TACTTGGATACACATTCAAT+AGG 0.517880 2_3:+60201259 None:intergenic
AGAAATATGCTAAGATGGCA+TGG 0.519247 2_3:-60201161 Msa0303090:CDS
GGTTGGTAGGTATAATTTGG+TGG 0.528341 2_3:+60201586 None:intergenic
GTCAGAACAGATTACACAAA+GGG 0.530197 2_3:-60203515 Msa0303090:CDS
CATAATCAAAACAGCAAACA+AGG 0.542949 2_3:-60202928 Msa0303090:CDS
AGAAGCCTCAACATTAACAT+TGG 0.547079 2_3:+60202842 None:intergenic
GAAGCACAAGCTGTCTCACC+TGG 0.551867 2_3:-60204482 Msa0303090:CDS
CTTGTTTAGATACAAATGAT+GGG 0.557067 2_3:-60201356 Msa0303090:CDS
ATTTCTTCATAGGCTTGCAA+TGG 0.560254 2_3:+60201178 None:intergenic
AACAGAAGCATTAAAAGGCA+TGG 0.560327 2_3:-60202883 Msa0303090:CDS
TTAAAGATGTTCATAGCCAA+AGG 0.561779 2_3:-60204551 Msa0303090:exon
GAACAGTTTCTGGTGTACTA+CGG 0.561972 2_3:-60202267 Msa0303090:intron
GATGTTCATAGCCAAAGGCT+TGG 0.569407 2_3:-60204546 Msa0303090:CDS
TATATACAAATGTTGCATGT+CGG 0.581404 2_3:+60200790 None:intergenic
TATCTGGACAATTCTCGGGT+TGG 0.582340 2_3:+60201569 None:intergenic
CTGGTGTACTACGGTTAAGG+AGG 0.583051 2_3:-60202258 Msa0303090:CDS
TGGACAATTCTCGGGTTGGT+AGG 0.583599 2_3:+60201573 None:intergenic
TCACAACTCTTGTAATTACA+AGG 0.584647 2_3:+60203191 None:intergenic
ATATATATTATATATTAAAG+GGG 0.586177 2_3:-60200772 Msa0303090:three_prime_UTR
ATATAGGAACCGGTATTGGA+AGG 0.587145 2_3:-60200919 Msa0303090:three_prime_UTR
TCATGGTTCAGATGGTTCTG+TGG 0.587485 2_3:-60201058 Msa0303090:CDS
AAGGGATAATACAATTAGAG+TGG 0.592143 2_3:-60203497 Msa0303090:CDS
AATTGTGACATGGTTCAGCT+GGG 0.592488 2_3:-60204868 None:intergenic
GAAATATGCTAAGATGGCAT+GGG 0.595556 2_3:-60201160 Msa0303090:CDS
AACATGAGAAATATGGCCAA+AGG 0.602955 2_3:+60203155 None:intergenic
GCTTTGAGCAATTCTTGACA+TGG 0.606847 2_3:+60201872 None:intergenic
TGATAAATTCAAGAGATGAA+AGG 0.622724 2_3:+60204826 None:intergenic
GAATTTGGTACTTCACAATG+AGG 0.631175 2_3:+60201033 None:intergenic
TGGTGTACTACGGTTAAGGA+GGG 0.631651 2_3:-60202257 Msa0303090:CDS
TATGCTAAGATGGCATGGGT+AGG 0.632516 2_3:-60201156 Msa0303090:CDS
TATATATTATATATTAAAGG+GGG 0.635375 2_3:-60200771 Msa0303090:three_prime_UTR
AAGGATTGCAAACAAGAACA+AGG 0.637380 2_3:+60201617 None:intergenic
AATGATGGGAGTTGTGACAA+TGG 0.638209 2_3:-60201342 Msa0303090:CDS
ACAAAACCATGATCACTCCA+AGG 0.642179 2_3:+60201124 None:intergenic
TAGGCTTGCAATGGTCAACA+AGG 0.643609 2_3:+60201187 None:intergenic
TAAGATGGCATGGGTAGGAA+TGG 0.645876 2_3:-60201151 Msa0303090:CDS
GGAATGTTATGCCTTCTATG+TGG 0.645924 2_3:-60203293 Msa0303090:CDS
GGAAGCCAATGTTAATGTTG+AGG 0.652341 2_3:-60202847 Msa0303090:CDS
ACGAATAGGTGACATTCCAA+AGG 0.664454 2_3:-60201539 Msa0303090:intron
TTACCTGCAGCAGAATCACC+AGG 0.670804 2_3:+60204464 None:intergenic
ATTTGTGTAGAGTTGCAACA+GGG 0.687136 2_3:-60203007 Msa0303090:intron
TGTCAGAACAGATTACACAA+AGG 0.693803 2_3:-60203516 Msa0303090:CDS
TGAGAGTTAAAATTGTGACA+TGG 0.716889 2_3:-60204878 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATTATATATTAAA+GGG - chr2_3:60204805-60204824 Msa0303090:intron 0.0%
!!! TTGATATTTTTATATTTGTT+TGG + chr2_3:60201907-60201926 None:intergenic 10.0%
!! AAAATATTACTATGTAATTA+TGG + chr2_3:60203561-60203580 None:intergenic 10.0%
!! TATATATTATATATTAAAGG+GGG - chr2_3:60204807-60204826 Msa0303090:intron 10.0%
!! TACATATACATAATTTGATT+TGG - chr2_3:60200920-60200939 Msa0303090:three_prime_UTR 15.0%
!!! CATTTTTATGATATTTGATA+GGG + chr2_3:60201478-60201497 None:intergenic 15.0%
!!! GCTTTAAATATTTATTTCAA+AGG - chr2_3:60201549-60201568 Msa0303090:CDS 15.0%
!!! TACTTTTTGAAATTATCTAA+TGG + chr2_3:60202109-60202128 None:intergenic 15.0%
!!! GTAATATTTTTATAAAGTAG+AGG - chr2_3:60203571-60203590 Msa0303090:intron 15.0%
!!! TATTTAGTTCATAAGAATAT+AGG - chr2_3:60204643-60204662 Msa0303090:intron 15.0%
!! TTTATCAGAACAATATTTGA+TGG + chr2_3:60200846-60200865 None:intergenic 20.0%
!! ATTCATGTTGAAATATTACA+TGG - chr2_3:60201239-60201258 Msa0303090:CDS 20.0%
!!! CCATTTTTATGATATTTGAT+AGG + chr2_3:60201479-60201498 None:intergenic 20.0%
!! CCTATCAAATATCATAAAAA+TGG - chr2_3:60201476-60201495 Msa0303090:intron 20.0%
!! AAATCATAAAAATGGTCAAA+TGG - chr2_3:60201522-60201541 Msa0303090:intron 20.0%
!! AATCATAAAAATGGTCAAAT+GGG - chr2_3:60201523-60201542 Msa0303090:intron 20.0%
!! ACATGATATATTTATTAACC+AGG - chr2_3:60201605-60201624 Msa0303090:CDS 20.0%
!!! ATGTTAGAAATTGTTTTGTT+AGG - chr2_3:60201807-60201826 Msa0303090:intron 20.0%
!!! TGTTAGAAATTGTTTTGTTA+GGG - chr2_3:60201808-60201827 Msa0303090:intron 20.0%
!!! TCATTTTTTGAAATTGTCTT+TGG - chr2_3:60201994-60202013 Msa0303090:intron 20.0%
!! TTTCGTCATTAAAATTGTAA+TGG - chr2_3:60202882-60202901 Msa0303090:CDS 20.0%
!! TTTACTATTTAAACAGTAGT+AGG + chr2_3:60203106-60203125 None:intergenic 20.0%
!! AAAATGAATGAAAAATTGCA+TGG - chr2_3:60203123-60203142 Msa0303090:intron 20.0%
!!! TTAACATTGTGTTTTGATTT+TGG - chr2_3:60203234-60203253 Msa0303090:CDS 20.0%
!! TGTAATTATGGTAATAAGAA+AGG + chr2_3:60203549-60203568 None:intergenic 20.0%
!! TATCTATAATCTTGTTAATG+AGG - chr2_3:60203759-60203778 Msa0303090:intron 20.0%
!! ACATTAATATAGAACTCATT+TGG + chr2_3:60203824-60203843 None:intergenic 20.0%
!!! TGTTCATAAACTATTGTTTT+TGG - chr2_3:60203841-60203860 Msa0303090:intron 20.0%
!! TATATAGGACTAAAGTTAAA+TGG - chr2_3:60204115-60204134 Msa0303090:intron 20.0%
!!! AATGTGATCATTCTTTTTTA+AGG - chr2_3:60204184-60204203 Msa0303090:intron 20.0%
!! TTTGTATCTAAACAAGTAAA+AGG + chr2_3:60204218-60204237 None:intergenic 20.0%
!! CATTTGAAAAAAGTTATACA+CGG + chr2_3:60204714-60204733 None:intergenic 20.0%
!!! AAATTTTATCCCACTAAATA+AGG + chr2_3:60204750-60204769 None:intergenic 20.0%
! TGATAAATTCAAGAGATGAA+AGG + chr2_3:60200755-60200774 None:intergenic 25.0%
! TTGATTGCATCTAGTTAAAT+TGG - chr2_3:60201000-60201019 Msa0303090:CDS 25.0%
! TTGAATATAATCACATGTGT+CGG - chr2_3:60201348-60201367 Msa0303090:CDS 25.0%
!! GATAATTTCAAAAAGTACAG+AGG - chr2_3:60202112-60202131 Msa0303090:CDS 25.0%
! AAGGTTTATCATCACAAAAA+TGG - chr2_3:60202339-60202358 Msa0303090:intron 25.0%
! CTCTAATGATTAATCACTAA+AGG + chr2_3:60202483-60202502 None:intergenic 25.0%
!!! CGACACATACAATTTTTTTA+TGG - chr2_3:60202515-60202534 Msa0303090:intron 25.0%
!!! TTTTCAAGCCTTTATTGATA+AGG + chr2_3:60202839-60202858 None:intergenic 25.0%
! GTCATTAAAATTGTAATGGT+CGG - chr2_3:60202886-60202905 Msa0303090:CDS 25.0%
! AATTTCAACGACTAAATTGA+CGG - chr2_3:60203032-60203051 Msa0303090:intron 25.0%
! TTTAGTCCTTGAAATTGAAA+AGG + chr2_3:60203059-60203078 None:intergenic 25.0%
! AATGGAATAAATTTCATTGC+AGG - chr2_3:60203150-60203169 Msa0303090:CDS 25.0%
! TGTATCAATCATTATGTGTA+TGG + chr2_3:60203261-60203280 None:intergenic 25.0%
! ACATGATTCTCATATAATGT+TGG - chr2_3:60203278-60203297 Msa0303090:CDS 25.0%
!! AATTTTCATTGAACAGTTTC+TGG - chr2_3:60203301-60203320 Msa0303090:CDS 25.0%
!!! TGAAATTTTAGCATACTTAC+AGG + chr2_3:60203354-60203373 None:intergenic 25.0%
! TACTCCAACATGAAATTAAT+AGG + chr2_3:60203882-60203901 None:intergenic 25.0%
!!! GAGTAACTTTTTTGGATTTT+TGG - chr2_3:60203897-60203916 Msa0303090:intron 25.0%
!!! AACTTTTTTGGATTTTTGGT+TGG - chr2_3:60203901-60203920 Msa0303090:intron 25.0%
!!! ACATCTTGGTCTTATAATTT+AGG + chr2_3:60204158-60204177 None:intergenic 25.0%
! ATCACATTGTTAATACATCT+TGG + chr2_3:60204172-60204191 None:intergenic 25.0%
! ACTTGTTTAGATACAAATGA+TGG - chr2_3:60204221-60204240 Msa0303090:intron 25.0%
! CTTGTTTAGATACAAATGAT+GGG - chr2_3:60204222-60204241 Msa0303090:intron 25.0%
!! AGAATGCATCTTTTACAATT+TGG + chr2_3:60204364-60204383 None:intergenic 25.0%
! ATCTTAGCATATTTCTTCAT+AGG + chr2_3:60204413-60204432 None:intergenic 25.0%
! TATGAAGAAATATGCTAAGA+TGG - chr2_3:60204412-60204431 Msa0303090:intron 25.0%
!!! TGGTTTTGTTGATTATGTTT+TGG - chr2_3:60204468-60204487 Msa0303090:CDS 25.0%
!!! GATTATGTTTTGGACTATAA+AGG - chr2_3:60204478-60204497 Msa0303090:CDS 25.0%
!! ATTCAGTATACCTTATTTAG+TGG - chr2_3:60204737-60204756 Msa0303090:intron 25.0%
!! TTCAGTATACCTTATTTAGT+GGG - chr2_3:60204738-60204757 Msa0303090:intron 25.0%
! TATATACAAATGTTGCATGT+CGG + chr2_3:60204791-60204810 None:intergenic 25.0%
GATTATGATGATATAGACCA+TGG - chr2_3:60200936-60200955 Msa0303090:three_prime_UTR 30.0%
GTATATGCATATAGATACCA+TGG + chr2_3:60200956-60200975 None:intergenic 30.0%
TTAAAGATGTTCATAGCCAA+AGG - chr2_3:60201027-60201046 Msa0303090:CDS 30.0%
TATAATAGATACCAAGCCTT+TGG + chr2_3:60201046-60201065 None:intergenic 30.0%
GTAGATTGCAGAAAATTTGA+AGG + chr2_3:60201190-60201209 None:intergenic 30.0%
ACGTCTTCAATTAGAAATGT+CGG - chr2_3:60201397-60201416 Msa0303090:intron 30.0%
AAATGTCGGTATTACAAAAG+TGG - chr2_3:60201411-60201430 Msa0303090:intron 30.0%
ATTTATTAACCAGGAAGAGT+AGG - chr2_3:60201614-60201633 Msa0303090:CDS 30.0%
TTTATTAACCAGGAAGAGTA+GGG - chr2_3:60201615-60201634 Msa0303090:CDS 30.0%
!! TAATTTGTTATGCTTTAGCC+AGG + chr2_3:60201651-60201670 None:intergenic 30.0%
!!! GAGAGACAATCTTTTTTTCA+TGG + chr2_3:60201733-60201752 None:intergenic 30.0%
GTATGATAGTAGCTAAACTT+GGG + chr2_3:60201787-60201806 None:intergenic 30.0%
TGTATGATAGTAGCTAAACT+TGG + chr2_3:60201788-60201807 None:intergenic 30.0%
AAGGGATAATACAATTAGAG+TGG - chr2_3:60202081-60202100 Msa0303090:CDS 30.0%
! AATTTCAAAAAGTACAGAGG+AGG - chr2_3:60202115-60202134 Msa0303090:CDS 30.0%
ACATCACCAACAAGAATTAT+TGG - chr2_3:60202143-60202162 Msa0303090:intron 30.0%
TACACTCCAATAATTCTTGT+TGG + chr2_3:60202152-60202171 None:intergenic 30.0%
GAAGTTAGACTCAAAAAAGA+GGG + chr2_3:60202186-60202205 None:intergenic 30.0%
TGAAGTTAGACTCAAAAAAG+AGG + chr2_3:60202187-60202206 None:intergenic 30.0%
TTGTAGTCTTTGATATTCAC+TGG - chr2_3:60202243-60202262 Msa0303090:intron 30.0%
TTGATATTCACTGGAGTATA+TGG - chr2_3:60202252-60202271 Msa0303090:CDS 30.0%
CATACAAAATTCCACATAGA+AGG + chr2_3:60202299-60202318 None:intergenic 30.0%
! CTTCTATGTGGAATTTTGTA+TGG - chr2_3:60202297-60202316 Msa0303090:intron 30.0%
!! AGTTATTTTGCTGATCACAA+AGG - chr2_3:60202320-60202339 Msa0303090:intron 30.0%
GTTTATCATCACAAAAATGG+AGG - chr2_3:60202342-60202361 Msa0303090:intron 30.0%
TCACAACTCTTGTAATTACA+AGG + chr2_3:60202390-60202409 None:intergenic 30.0%
TGATGCTTTACTAATTCCTT+TGG - chr2_3:60202407-60202426 Msa0303090:CDS 30.0%
GGCTATTAACATGAGAAATA+TGG + chr2_3:60202433-60202452 None:intergenic 30.0%
CATAATCAAAACAGCAAACA+AGG - chr2_3:60202650-60202669 Msa0303090:intron 30.0%
!! AACACAACAGAAGCATTAAA+AGG - chr2_3:60202690-60202709 Msa0303090:intron 30.0%
AAATGCAAGCTCAGAAAAAT+AGG - chr2_3:60202811-60202830 Msa0303090:CDS 30.0%
GTTTCTCAAACTTGTGAAAT+TGG - chr2_3:60202917-60202936 Msa0303090:CDS 30.0%
! AATTTTGCACCACGATTTAA+GGG + chr2_3:60202951-60202970 None:intergenic 30.0%
! AAATTTTGCACCACGATTTA+AGG + chr2_3:60202952-60202971 None:intergenic 30.0%
GAAAAATTGCATGGAAGTAA+TGG - chr2_3:60203132-60203151 Msa0303090:intron 30.0%
AATTAATAGGTCCAGTATGT+TGG + chr2_3:60203869-60203888 None:intergenic 30.0%
TGGACCTATTAATTTCATGT+TGG - chr2_3:60203875-60203894 Msa0303090:intron 30.0%
!!! TCATGTTGGAGTAACTTTTT+TGG - chr2_3:60203889-60203908 Msa0303090:intron 30.0%
AGTATTATCTGGACAATTCT+CGG + chr2_3:60204017-60204036 None:intergenic 30.0%
CCTATTCGTATAGTATTATC+TGG + chr2_3:60204028-60204047 None:intergenic 30.0%
CCAGATAATACTATACGAAT+AGG - chr2_3:60204025-60204044 Msa0303090:intron 30.0%
TTAGTCCTATATAAACAGCT+CGG + chr2_3:60204108-60204127 None:intergenic 30.0%
TACTTGGATACACATTCAAT+AGG + chr2_3:60204322-60204341 None:intergenic 30.0%
ATTGAATGTGTATCCAAGTA+TGG - chr2_3:60204322-60204341 Msa0303090:intron 30.0%
TCTAACAAATGTTCCATACT+TGG + chr2_3:60204338-60204357 None:intergenic 30.0%
AGTCATGAACATTGTTATCA+TGG - chr2_3:60204503-60204522 Msa0303090:CDS 30.0%
! TTTAACTGCTCTTGATTTGA+AGG + chr2_3:60204570-60204589 None:intergenic 30.0%
GTTCATAAGAATATAGGAAC+CGG - chr2_3:60204649-60204668 Msa0303090:intron 30.0%
! AAAAGTTATACACGGATTAC+TGG + chr2_3:60204706-60204725 None:intergenic 30.0%
! GTTATTTCAATAGACCTTAG+AGG - chr2_3:60204837-60204856 Msa0303090:five_prime_UTR 30.0%
AATTATACTCACTTCCTCTA+AGG + chr2_3:60204854-60204873 None:intergenic 30.0%
GGAAAGAACATTATGACATG+TGG + chr2_3:60200807-60200826 None:intergenic 35.0%
GATGGTATAAGTGAGTTACA+AGG + chr2_3:60200828-60200847 None:intergenic 35.0%
TTGCATCTAGTTAAATTGGC+AGG - chr2_3:60201004-60201023 Msa0303090:CDS 35.0%
TTGTACTTGTAGAGACTATG+AGG + chr2_3:60201151-60201170 None:intergenic 35.0%
TTTCACTCATTATGAGAGAG+AGG + chr2_3:60201840-60201859 None:intergenic 35.0%
TGTCAGAACAGATTACACAA+AGG - chr2_3:60202062-60202081 Msa0303090:CDS 35.0%
GTCAGAACAGATTACACAAA+GGG - chr2_3:60202063-60202082 Msa0303090:CDS 35.0%
GGAGTATATGGATATGCAAT+TGG - chr2_3:60202264-60202283 Msa0303090:CDS 35.0%
AACATGAGAAATATGGCCAA+AGG + chr2_3:60202426-60202445 None:intergenic 35.0%
ACAAGGTTGAATGACTTACA+TGG + chr2_3:60202454-60202473 None:intergenic 35.0%
TCATGCATATACATCACTTG+AGG + chr2_3:60202545-60202564 None:intergenic 35.0%
ATTTGTGTAGAGTTGCAACA+GGG - chr2_3:60202571-60202590 Msa0303090:intron 35.0%
!!! CTGAAGTTTTAGCTTCTGAA+TGG + chr2_3:60202623-60202642 None:intergenic 35.0%
!! AACAGAAGCATTAAAAGGCA+TGG - chr2_3:60202695-60202714 Msa0303090:intron 35.0%
AGAAGCCTCAACATTAACAT+TGG + chr2_3:60202739-60202758 None:intergenic 35.0%
AATAGGCGCCTTATCAATAA+AGG - chr2_3:60202828-60202847 Msa0303090:CDS 35.0%
GAATTTAGTCCCTTAAATCG+TGG - chr2_3:60202939-60202958 Msa0303090:CDS 35.0%
GTCGTTGAAATTTGCGAAAT+AGG + chr2_3:60203024-60203043 None:intergenic 35.0%
!! CTTGCTGTAACAATTTTGTC+AGG - chr2_3:60203209-60203228 Msa0303090:CDS 35.0%
!! CTTTTGCTACTCTTTTTCAC+AGG - chr2_3:60203439-60203458 Msa0303090:CDS 35.0%
! GTATTATGCTGGCTATTCTT+TGG - chr2_3:60203489-60203508 Msa0303090:CDS 35.0%
GAGCTTAAGCTGTTGTTATA+AGG + chr2_3:60203679-60203698 None:intergenic 35.0%
GCACTAAATTCAGATAGAAC+TGG + chr2_3:60203736-60203755 None:intergenic 35.0%
GTTCTATCTGAATTTAGTGC+TGG - chr2_3:60203736-60203755 Msa0303090:intron 35.0%
!!! TGTTTTTGGATCCAACATAC+TGG - chr2_3:60203855-60203874 Msa0303090:intron 35.0%
AAGGATTGCAAACAAGAACA+AGG + chr2_3:60203964-60203983 None:intergenic 35.0%
GTATTATCTGGACAATTCTC+GGG + chr2_3:60204016-60204035 None:intergenic 35.0%
ACTCTTCTATCGTATACCTT+TGG + chr2_3:60204058-60204077 None:intergenic 35.0%
TAAACAGCTCGGATTGTATA+GGG + chr2_3:60204097-60204116 None:intergenic 35.0%
ATAAACAGCTCGGATTGTAT+AGG + chr2_3:60204098-60204117 None:intergenic 35.0%
ACAATCCGAGCTGTTTATAT+AGG - chr2_3:60204100-60204119 Msa0303090:intron 35.0%
ATTTCTTCATAGGCTTGCAA+TGG + chr2_3:60204403-60204422 None:intergenic 35.0%
AGAAATATGCTAAGATGGCA+TGG - chr2_3:60204417-60204436 Msa0303090:intron 35.0%
GAAATATGCTAAGATGGCAT+GGG - chr2_3:60204418-60204437 Msa0303090:intron 35.0%
CATTGTTATCATGGTTCAGA+TGG - chr2_3:60204512-60204531 Msa0303090:CDS 35.0%
GAATTTGGTACTTCACAATG+AGG + chr2_3:60204548-60204567 None:intergenic 35.0%
! GCTCTTGATTTGAAGGAATT+TGG + chr2_3:60204563-60204582 None:intergenic 35.0%
AAGAATATAGGAACCGGTAT+TGG - chr2_3:60204655-60204674 Msa0303090:intron 35.0%
CAGCTTGTGCTTCAATTTGT+GGG + chr2_3:60201089-60201108 None:intergenic 40.0%
ACAGCTTGTGCTTCAATTTG+TGG + chr2_3:60201090-60201109 None:intergenic 40.0%
AACTCTGATAGCACATACAC+CGG - chr2_3:60201272-60201291 Msa0303090:CDS 40.0%
GGCAACACACATTATCATGT+CGG - chr2_3:60201306-60201325 Msa0303090:CDS 40.0%
GATAGTAGCTAAACTTGGGT+AGG + chr2_3:60201783-60201802 None:intergenic 40.0%
GGAATGTTATGCCTTCTATG+TGG - chr2_3:60202285-60202304 Msa0303090:intron 40.0%
ATCACTAAAGGCTAGAGACA+AGG + chr2_3:60202471-60202490 None:intergenic 40.0%
GATTTGTGTAGAGTTGCAAC+AGG - chr2_3:60202570-60202589 Msa0303090:intron 40.0%
GGAAGCCAATGTTAATGTTG+AGG - chr2_3:60202731-60202750 Msa0303090:intron 40.0%
! GACGGACCTTTTCAATTTCA+AGG - chr2_3:60203050-60203069 Msa0303090:intron 40.0%
!! GAACAGTTTCTGGTGTACTA+CGG - chr2_3:60203311-60203330 Msa0303090:CDS 40.0%
! TTTCTGGTGTACTACGGTTA+AGG - chr2_3:60203317-60203336 Msa0303090:CDS 40.0%
GGTTGTTGACAGTATTATGC+TGG - chr2_3:60203478-60203497 Msa0303090:CDS 40.0%
TGAGCAATTCTTGACATGGA+AGG + chr2_3:60203705-60203724 None:intergenic 40.0%
! GCTTTGAGCAATTCTTGACA+TGG + chr2_3:60203709-60203728 None:intergenic 40.0%
!!! GGATTTTTGGTTGGTTGTCT+AGG - chr2_3:60203910-60203929 Msa0303090:intron 40.0%
!! GGTTGGTAGGTATAATTTGG+TGG + chr2_3:60203995-60204014 None:intergenic 40.0%
!! TCGGGTTGGTAGGTATAATT+TGG + chr2_3:60203998-60204017 None:intergenic 40.0%
ACGAATAGGTGACATTCCAA+AGG - chr2_3:60204039-60204058 Msa0303090:intron 40.0%
! AATGATGGGAGTTGTGACAA+TGG - chr2_3:60204236-60204255 Msa0303090:intron 40.0%
ACAAAACCATGATCACTCCA+AGG + chr2_3:60204457-60204476 None:intergenic 40.0%
! ATATAGGAACCGGTATTGGA+AGG - chr2_3:60204659-60204678 Msa0303090:intron 40.0%
! GCATTTTTGCCTTCCAATAC+CGG + chr2_3:60204671-60204690 None:intergenic 40.0%
GATGTTCATAGCCAAAGGCT+TGG - chr2_3:60201032-60201051 Msa0303090:CDS 45.0%
CATACACCGGACACAACATT+TGG - chr2_3:60201285-60201304 Msa0303090:CDS 45.0%
GTGTTGCCAAATGTTGTGTC+CGG + chr2_3:60201294-60201313 None:intergenic 45.0%
!! CAACAGGGCTAGTTCTTGTA+GGG - chr2_3:60202586-60202605 Msa0303090:intron 45.0%
AGGCATGGAGAGTAACTTGA+TGG - chr2_3:60202710-60202729 Msa0303090:intron 45.0%
GGAGAGACAGTAGAGCAAAT+AGG + chr2_3:60203085-60203104 None:intergenic 45.0%
TGGTGTACTACGGTTAAGGA+GGG - chr2_3:60203321-60203340 Msa0303090:CDS 45.0%
!! ACAGGCTTGTTGTACTTTGC+TGG - chr2_3:60203457-60203476 Msa0303090:CDS 45.0%
!! TAATTTGGTGGCGCTGAGAA+AGG + chr2_3:60203983-60204002 None:intergenic 45.0%
TATCTGGACAATTCTCGGGT+TGG + chr2_3:60204012-60204031 None:intergenic 45.0%
TAGGCTTGCAATGGTCAACA+AGG + chr2_3:60204394-60204413 None:intergenic 45.0%
TATGCTAAGATGGCATGGGT+AGG - chr2_3:60204422-60204441 Msa0303090:intron 45.0%
TAAGATGGCATGGGTAGGAA+TGG - chr2_3:60204427-60204446 Msa0303090:intron 45.0%
! TCATGGTTCAGATGGTTCTG+TGG - chr2_3:60204520-60204539 Msa0303090:CDS 45.0%
!! AAAAAATAAAATCATAAAAA+TGG - chr2_3:60201514-60201533 Msa0303090:intron 5.0%
!! GTATATATATTATATATTAA+AGG - chr2_3:60204804-60204823 Msa0303090:intron 5.0%
!! ATATATATTATATATTAAAG+GGG - chr2_3:60204806-60204825 Msa0303090:intron 5.0%
TTACCTGCAGCAGAATCACC+AGG + chr2_3:60201117-60201136 None:intergenic 50.0%
AACCAGGAAGAGTAGGGCTA+AGG - chr2_3:60201621-60201640 Msa0303090:CDS 50.0%
TTCCTTAGCCCTACTCTTCC+TGG + chr2_3:60201626-60201645 None:intergenic 50.0%
GAGTAGGGCTAAGGAATTCC+TGG - chr2_3:60201630-60201649 Msa0303090:CDS 50.0%
!! GCAACAGGGCTAGTTCTTGT+AGG - chr2_3:60202585-60202604 Msa0303090:intron 50.0%
CTGGTGTACTACGGTTAAGG+AGG - chr2_3:60203320-60203339 Msa0303090:CDS 50.0%
!! TGGACAATTCTCGGGTTGGT+AGG + chr2_3:60204008-60204027 None:intergenic 50.0%
TGGGTAGGAATGGTGTTCCT+TGG - chr2_3:60204437-60204456 Msa0303090:intron 50.0%
GGTGTTCCTTGGAGTGATCA+TGG - chr2_3:60204448-60204467 Msa0303090:intron 50.0%
GAAGCACAAGCTGTCTCACC+TGG - chr2_3:60201096-60201115 Msa0303090:CDS 55.0%
TCACCTGGTGATTCTGCTGC+AGG - chr2_3:60201111-60201130 Msa0303090:CDS 55.0%
!! CACATGTGTCGGTGTCACGT+CGG - chr2_3:60201359-60201378 Msa0303090:CDS 55.0%
!! TGTCGGTGTCACGTCGGAGT+CGG - chr2_3:60201365-60201384 Msa0303090:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 60200715 60204885 60200715 ID=Msa0303090;Name=Msa0303090
chr2_3 mRNA 60200715 60204885 60200715 ID=Msa0303090-mRNA-1;Parent=Msa0303090;Name=Msa0303090-mRNA-1;_AED=0.08;_eAED=0.08;_QI=80|0.8|0.81|1|0.9|0.81|11|281|498
chr2_3 exon 60200715 60201394 60200715 ID=Msa0303090-mRNA-1:exon:19619;Parent=Msa0303090-mRNA-1
chr2_3 exon 60201540 60201668 60201540 ID=Msa0303090-mRNA-1:exon:19618;Parent=Msa0303090-mRNA-1
chr2_3 exon 60201820 60201970 60201820 ID=Msa0303090-mRNA-1:exon:19617;Parent=Msa0303090-mRNA-1
chr2_3 exon 60202057 60202139 60202057 ID=Msa0303090-mRNA-1:exon:19616;Parent=Msa0303090-mRNA-1
chr2_3 exon 60202247 60202283 60202247 ID=Msa0303090-mRNA-1:exon:19615;Parent=Msa0303090-mRNA-1
chr2_3 exon 60202370 60202428 60202370 ID=Msa0303090-mRNA-1:exon:19614;Parent=Msa0303090-mRNA-1
chr2_3 exon 60202800 60203019 60202800 ID=Msa0303090-mRNA-1:exon:19613;Parent=Msa0303090-mRNA-1
chr2_3 exon 60203146 60203351 60203146 ID=Msa0303090-mRNA-1:exon:19612;Parent=Msa0303090-mRNA-1
chr2_3 exon 60203432 60203544 60203432 ID=Msa0303090-mRNA-1:exon:19611;Parent=Msa0303090-mRNA-1
chr2_3 exon 60204468 60204586 60204468 ID=Msa0303090-mRNA-1:exon:19610;Parent=Msa0303090-mRNA-1
chr2_3 exon 60204825 60204885 60204825 ID=Msa0303090-mRNA-1:exon:19609;Parent=Msa0303090-mRNA-1
chr2_3 five_prime_UTR 60204825 60204885 60204825 ID=Msa0303090-mRNA-1:five_prime_utr;Parent=Msa0303090-mRNA-1
chr2_3 five_prime_UTR 60204568 60204586 60204568 ID=Msa0303090-mRNA-1:five_prime_utr;Parent=Msa0303090-mRNA-1
chr2_3 CDS 60204468 60204567 60204468 ID=Msa0303090-mRNA-1:cds;Parent=Msa0303090-mRNA-1
chr2_3 CDS 60203432 60203544 60203432 ID=Msa0303090-mRNA-1:cds;Parent=Msa0303090-mRNA-1
chr2_3 CDS 60203146 60203351 60203146 ID=Msa0303090-mRNA-1:cds;Parent=Msa0303090-mRNA-1
chr2_3 CDS 60202800 60203019 60202800 ID=Msa0303090-mRNA-1:cds;Parent=Msa0303090-mRNA-1
chr2_3 CDS 60202370 60202428 60202370 ID=Msa0303090-mRNA-1:cds;Parent=Msa0303090-mRNA-1
chr2_3 CDS 60202247 60202283 60202247 ID=Msa0303090-mRNA-1:cds;Parent=Msa0303090-mRNA-1
chr2_3 CDS 60202057 60202139 60202057 ID=Msa0303090-mRNA-1:cds;Parent=Msa0303090-mRNA-1
chr2_3 CDS 60201820 60201970 60201820 ID=Msa0303090-mRNA-1:cds;Parent=Msa0303090-mRNA-1
chr2_3 CDS 60201540 60201668 60201540 ID=Msa0303090-mRNA-1:cds;Parent=Msa0303090-mRNA-1
chr2_3 CDS 60200996 60201394 60200996 ID=Msa0303090-mRNA-1:cds;Parent=Msa0303090-mRNA-1
chr2_3 three_prime_UTR 60200715 60200995 60200715 ID=Msa0303090-mRNA-1:three_prime_utr;Parent=Msa0303090-mRNA-1
Gene Sequence

>Msa0303090

ATGTTCATAGCCAAAGGCTTGGTATCTATTATAGTGATTATAACATTGATTCTCCCACAAATTGAAGCACAAGCTGTCTCACCTGGTGATTCTGCTGCAGATAATGTGTCAGAACAGATTACACAAAGGGATAATACAATTAGAGTGGATCCATTAGATAATTTCAAAAAGTACAGAGGAGGATTTGACATCACCAACAAGAATTATTGGAGTTCTTTGATATTCACTGGAGTATATGGATATGCAATTGGAATGTTATGCCTTCTATGTGGAATTTTGTATGGAGTTATTTTGCTGATCACAAAGGTTTATCATCACAAAAATGGAGGAAAAAGAATGAAGAAAGTGTTTCCTTGTAATTACAAGAGTTGTGATGCTTTACTAATTCCTTTGGCCATATTTCTCATGTTAATAGCCATAGTTGCAACAGGGCTAGTTCTTGTAGGGAGTGCAAGATTCCATTCAGAAGCTAAAACTTCAGTTGATATCATAATCAAAACAGCAAACAAGGCATCAGAAACAATACACAACACAACAGAAGCATTAAAAGGCATGGAGAGTAACTTGATGGAAGCCAATGTTAATGTTGAGGCTTCTTCAAATCTTGACTCTACAGCTGAAAAACTTGATGATGCATCTGTTTATAACTACTACAGTGATCATGTGCTTGAACTTGCTTGCTGTAACAATTTTGTCAGTTTCTGGTGTACTACGGTTAAGGAGGGCATTGTACCTGCTTGTTGTACTTTGCTGGTTGTTGACAGTATTATGCTGGCTATTCTTTGGAGTCTATTTCTTCTTAGAAAAGTAATTCAAAAATTTTCTAGTGATGCTTGCACAGCTCTTGACAACTTTCAAGAAAATCCTTATAACAACAGCTTAAGCTCAATCCTTCCATGTCAAGAATTGCTCAAAGCAAAACCAGTTCTATCTGAATTTAGTGCTGGTATCTATAATCTTGTTAATGAGGTGAATGCAAACATATCAATGCAGACAAACCTTGTTCTTGTTTGCAATCCTTTCTCAGCGCCACCAAATTATACCTACCAACCCGAGAATTGTCCAGATAATACTATACGAATAGGTGACATTCCAAAGGTATTAAAGCCTTTTACTTGTTTAGATACAAATGATGGGAGTTGTGACAATGGAAATTTCATAACAAACAGTGAATATGCAAGAGTTGAAACTTACACAAATTCAATTCAAGACCTATTGAATGTGTATCCAAGTATGGAACATTTGTTAGAATGCCAAATTGTAAAAGATGCATTCTCTCAAGTCCTTGTTGACCATTGCAAGCCTATGAAGAAATATGCTAAGATGGCATGGGTAGGAATGGTGTTCCTTGGAGTGATCATGGTTTTGTTGATTATGTTTTGGACTATAAAGGCTAGTCATGAACATTGTTATCATGGTTCAGATGGTTCTGTGGAGCCTCATTGTGAAGTACCAAATTCCTTCAAATCAAGAGCAGTTAAAGAGATTGAGATTTGA

Protein sequence

>Msa0303090

MFIAKGLVSIIVIITLILPQIEAQAVSPGDSAADNVSEQITQRDNTIRVDPLDNFKKYRGGFDITNKNYWSSLIFTGVYGYAIGMLCLLCGILYGVILLITKVYHHKNGGKRMKKVFPCNYKSCDALLIPLAIFLMLIAIVATGLVLVGSARFHSEAKTSVDIIIKTANKASETIHNTTEALKGMESNLMEANVNVEASSNLDSTAEKLDDASVYNYYSDHVLELACCNNFVSFWCTTVKEGIVPACCTLLVVDSIMLAILWSLFLLRKVIQKFSSDACTALDNFQENPYNNSLSSILPCQELLKAKPVLSEFSAGIYNLVNEVNANISMQTNLVLVCNPFSAPPNYTYQPENCPDNTIRIGDIPKVLKPFTCLDTNDGSCDNGNFITNSEYARVETYTNSIQDLLNVYPSMEHLLECQIVKDAFSQVLVDHCKPMKKYAKMAWVGMVFLGVIMVLLIMFWTIKASHEHCYHGSDGSVEPHCEVPNSFKSRAVKEIEI*