AlfalfaGEDB | Msa0307900

M. sativa cultivar zhongmu-4 / Msa0307900

KEGG: K13412
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005509 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0031090 GO:0031903 GO:0031984 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042175 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098588 GO:0098805 GO:0098827 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0307900	KAB1222533.1	59.869	613	159	12	89	696	313	843	0.0	669

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0307900	sp\|Q6F3A6\|CDPKA_ORYSJ	79.805	307	61	1	110	415	290	596	1.15e-174	514
Msa0307900	sp\|Q6F3A6\|CDPKA_ORYSJ	75.120	209	47	2	490	693	388	596	5.25e-97	314

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0023460	Msa0307900	0.869469	3.024543e-66	-8.615850e-47
Msa0162600	Msa0307900	0.808702	2.720185e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0307900	MtrunA17_Chr1g0176751	99.351	308	2	0	109	416	280	587	0.0	639
Msa0307900	MtrunA17_Chr1g0176751	81.028	253	38	3	454	696	337	589	1.70e-130	398
Msa0307900	MtrunA17_Chr1g0176751	95.370	108	1	1	1	108	1	104	5.21e-62	217
Msa0307900	MtrunA17_Chr1g0170281	79.421	311	61	2	106	415	271	579	4.76e-177	517
Msa0307900	MtrunA17_Chr1g0170281	74.641	209	46	3	490	693	373	579	5.33e-99	316
Msa0307900	MtrunA17_Chr7g0267751	75.083	301	75	0	111	411	293	593	2.27e-165	488
Msa0307900	MtrunA17_Chr7g0267751	71.495	214	55	2	489	696	389	602	1.04e-98	316
Msa0307900	MtrunA17_Chr5g0448721	70.667	300	88	0	110	409	253	552	1.28e-151	451
Msa0307900	MtrunA17_Chr5g0448721	65.025	203	67	1	489	687	350	552	1.21e-82	272
Msa0307900	MtrunA17_Chr1g0200601	69.453	311	93	1	111	421	188	496	6.83e-151	447

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0307900	AT5G04870.1	79.605	304	62	0	109	412	306	609	1.27e-173	510
Msa0307900	AT5G04870.1	70.732	205	56	1	490	690	405	609	1.75e-91	297
Msa0307900	AT3G10660.2	79.208	303	61	1	109	409	342	644	1.31e-170	503
Msa0307900	AT3G10660.2	71.569	204	52	2	490	687	441	644	2.50e-89	293
Msa0307900	AT3G10660.1	79.208	303	61	1	109	409	342	644	1.31e-170	503
Msa0307900	AT3G10660.1	71.569	204	52	2	490	687	441	644	2.50e-89	293
Msa0307900	AT4G35310.2	70.164	305	89	1	110	414	254	556	3.60e-153	456
Msa0307900	AT4G35310.2	65.347	202	66	1	490	687	352	553	1.33e-82	272
Msa0307900	AT4G35310.1	70.164	305	89	1	110	414	254	556	3.60e-153	456
Msa0307900	AT4G35310.1	65.347	202	66	1	490	687	352	553	1.33e-82	272

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Find 116 sgRNAs with CRISPR-Local

Find 763 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTGTTAACCGCTTACT+AGG	0.426437	2_4:+1123250	None:intergenic
AAATGCATGGCTCATGAAAG+AGG	0.539393	2_4:-1115259	Msa0307900:CDS
AACAGTGGCACGATCGACTA+TGG	0.382127	2_4:-1121944	Msa0307900:CDS
AAGAGTGGCACGATCGATTA+TGG	0.295384	2_4:-1113771	Msa0307900:CDS
AAGATATTGTTGCGGGAGGT+TGG	0.355023	2_4:-1115230	Msa0307900:CDS
AAGATGCTATCGAAGAATGT+CGG	0.558726	2_4:-1115116	Msa0307900:CDS
AAGCTGTTAACCGCTTACTA+GGG	0.608056	2_4:+1123251	None:intergenic
AAGGTTGGACTGAAAACATT+TGG	0.422871	2_4:-1114293	Msa0307900:CDS
AAGGTTGGACTGAAAAGATT+TGG	0.288207	2_4:-1122483	Msa0307900:CDS
AATAGACTACAATGAATTTG+TGG	0.460686	2_4:-1113364	Msa0307900:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGATTCATCCTTCGAAAAAA+AGG	+	chr2_4:1113297-1113316	None:intergenic	30.0%
TTCGAATGTGATTTCGATTA+AGG	-	chr2_4:1113823-1113842	Msa0307900:intron	30.0%
AATTAACATTTGGACAAACC+TGG	+	chr2_4:1114112-1114131	None:intergenic	30.0%
TTTATTGATGTGGAAAACCA+TGG	+	chr2_4:1114377-1114396	None:intergenic	30.0%
AAGCTAGCATCAATATAACA+GGG	+	chr2_4:1114526-1114545	None:intergenic	30.0%
ACTGTTAGCAACAAATGTTA+TGG	+	chr2_4:1114604-1114623	None:intergenic	30.0%
TCAAAGACTCGTTATATTAC+AGG	-	chr2_4:1114623-1114642	Msa0307900:CDS	30.0%
ATCTTGTACATTCTCTTATG+TGG	-	chr2_4:1114746-1114765	Msa0307900:intron	30.0%
ATCGGAACAAGATATATTTG+AGG	-	chr2_4:1114918-1114937	Msa0307900:intron	30.0%
TGTTATCCCATTGAGATTTA+TGG	-	chr2_4:1115086-1115105	Msa0307900:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	1113266	1125042	1113266	ID=Msa0307900;Name=Msa0307900
chr2_4	mRNA	1113266	1125042	1113266	ID=Msa0307900-mRNA-1;Parent=Msa0307900;Name=Msa0307900-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0\|0.36\|0.25\|0.91\|1\|1\|12\|0\|696
chr2_4	exon	1124721	1125042	1124721	ID=Msa0307900-mRNA-1:exon:426;Parent=Msa0307900-mRNA-1
chr2_4	exon	1123520	1123663	1123520	ID=Msa0307900-mRNA-1:exon:425;Parent=Msa0307900-mRNA-1
chr2_4	exon	1123239	1123391	1123239	ID=Msa0307900-mRNA-1:exon:424;Parent=Msa0307900-mRNA-1
chr2_4	exon	1122741	1122856	1122741	ID=Msa0307900-mRNA-1:exon:423;Parent=Msa0307900-mRNA-1
chr2_4	exon	1122440	1122607	1122440	ID=Msa0307900-mRNA-1:exon:422;Parent=Msa0307900-mRNA-1
chr2_4	exon	1121754	1121978	1121754	ID=Msa0307900-mRNA-1:exon:421;Parent=Msa0307900-mRNA-1
chr2_4	exon	1121514	1121633	1121514	ID=Msa0307900-mRNA-1:exon:420;Parent=Msa0307900-mRNA-1
chr2_4	exon	1115091	1115307	1115091	ID=Msa0307900-mRNA-1:exon:419;Parent=Msa0307900-mRNA-1
chr2_4	exon	1114545	1114658	1114545	ID=Msa0307900-mRNA-1:exon:418;Parent=Msa0307900-mRNA-1
chr2_4	exon	1114250	1114407	1114250	ID=Msa0307900-mRNA-1:exon:417;Parent=Msa0307900-mRNA-1
chr2_4	exon	1113581	1113805	1113581	ID=Msa0307900-mRNA-1:exon:416;Parent=Msa0307900-mRNA-1
chr2_4	exon	1113266	1113394	1113266	ID=Msa0307900-mRNA-1:exon:415;Parent=Msa0307900-mRNA-1
chr2_4	CDS	1124721	1125042	1124721	ID=Msa0307900-mRNA-1:cds;Parent=Msa0307900-mRNA-1
chr2_4	CDS	1123520	1123663	1123520	ID=Msa0307900-mRNA-1:cds;Parent=Msa0307900-mRNA-1
chr2_4	CDS	1123239	1123391	1123239	ID=Msa0307900-mRNA-1:cds;Parent=Msa0307900-mRNA-1
chr2_4	CDS	1122741	1122856	1122741	ID=Msa0307900-mRNA-1:cds;Parent=Msa0307900-mRNA-1
chr2_4	CDS	1122440	1122607	1122440	ID=Msa0307900-mRNA-1:cds;Parent=Msa0307900-mRNA-1
chr2_4	CDS	1121754	1121978	1121754	ID=Msa0307900-mRNA-1:cds;Parent=Msa0307900-mRNA-1
chr2_4	CDS	1121514	1121633	1121514	ID=Msa0307900-mRNA-1:cds;Parent=Msa0307900-mRNA-1
chr2_4	CDS	1115091	1115307	1115091	ID=Msa0307900-mRNA-1:cds;Parent=Msa0307900-mRNA-1
chr2_4	CDS	1114545	1114658	1114545	ID=Msa0307900-mRNA-1:cds;Parent=Msa0307900-mRNA-1
chr2_4	CDS	1114250	1114407	1114250	ID=Msa0307900-mRNA-1:cds;Parent=Msa0307900-mRNA-1
chr2_4	CDS	1113581	1113805	1113581	ID=Msa0307900-mRNA-1:cds;Parent=Msa0307900-mRNA-1
chr2_4	CDS	1113266	1113394	1113266	ID=Msa0307900-mRNA-1:cds;Parent=Msa0307900-mRNA-1

Gene Sequence

>Msa0307900

ATGGGAAACAACTGTGTCGGAACGAGAACCTTTTTTTCGAAGGATGAATCATCATCACGCGCAACTTTTCCAAGTCCATCTTGCTGGTCACGTTCCAAGAAAGATAGTGCACACAAAACAAGTCCAACAAAACCAAAAGAATCTGTTCAGAACAATCCTCCACCGGTAATGAAAATCGAAAAGGAAGATGAAAAGCCACCACCACAGCAGCAACATCAACAACAACATCATCAAAAACCGCGACAAAAACCACAAACCAATGAAGCTGTTGTTGCTACACCTGCAAAACCAAAGAGACCTCACAATGTGAAGAGACTAGCAAGTGACATTTTCAATGATGTAGTAGGAAGTCCATATTATGTTGCACCTGAAGTTTTACGCAAGCGATATGGTCCAGAAGCAGATGTGTGGAGTGCCGGTGTCATCTTGTACATTCTCTTATGTGGTGTGCCTCCATTTTGGGGCGAATCGGAACAAGATATATTTGAGGCCATTTTGAATAATGATCTTGATTTCTCATCGGATCCATGGCCTAGTATCTCTGAAAGTGCAAAAGACTTGGTTAAGAAGATGCTTGTCAGAGACCCTAGTAAGCGGTTAACAGCTTTTGACGTTCTCCGTCACCCGTGGATCCAAATTGATGGAGCAGCACCAGACAAGCCTCTAGATTCTGCAGTTTTGAGTCGCATGAAGCAGTTTACTGCAATGAACAAGCTCAAGAAAATGGCACTTAGAGTTATTGCAGAGAATCTATCTGAAGAAGAAATTGCTGGATTGAAAGAAATGTTTAAGATGATCGACACAGATAATAGTGGTCATATTACCTTTGAAGAACTCAAGGTTGGACTGAAAAGATTTGGGGCCAATCTAAAAGAATCTGAAATTTACGATCTAATGAAAGCTGCAGATGTTGATAACAGTGGCACGATCGACTATGGAGAATTCATAGCTGCAACATTACATTTAAACAAAGTTGATAGGGAAGATCATTTACATGCAGCATTCTCATATTTTGATAAAGATGGAAGTGGATACATCACAAAAGATGAGCTTCAAAAAGCTTGTGAAGAATTTGGCTTTAGAGATGTCCCCTTGGAGGAAATGATCCGAGAAGTTGATCAGAACAATGATGGAAGAATAGATTACAATGAATTTGTGGCTATGATGCATAGAGGGAATGCAGAAATGGGCAAGAGGGGTCGAAAGGGTAGCAGTAGTTTTAGCATTGGATTTAGGGAGGCACTACCAAAGGGGGTGAAGGAGTTCAAATTCGAAAATGCATGGCTCATGAAAGAGGGTTTTGAAGATATTGTTGCGGGAGGTTGGGAGAGAAGTTTGGATGTAGATGTGCTTTCACGTTTAAACAGTTGTACGGATGTAATGAATGAATGGGGACGCAAGCTGAGCCACATGTACAAAGATGCTATCGAAGAATGTCGGGCAGAATTGGAGAGACTCGGAGGAAGTCACCCATGGATCGAAATTGATAGAGCAGCACCAGACAAGACTCTTGATTCTGCAGTTTTGAGTCGCATGAAGCAGTTTACTGCAATGAACAAGCTCAAGAAAATGGCACTTAAGAATCTATCTGAAGAAGAAATTGCTGGATTAAAAGAAATGATCAAGATGATCGACACAGACAATAGTGGTCATATTACTTTTGAAGAACTCAAGGTTGGACTGAAAACATTTGGCGCCAATCTAAAAGAATCTGAAACTTACGATCTAATAAAAGCTGCAGATGTTGATAAGAGTGGCACGATCGATTATGGAGAATTCATAGCTGCAACATTACATTTAAACAAAGTTGATAGGGAAGATCATTTACATGCAGCATTCTCATATTTTGATAAAGATGGAAGTGGATACATCACAAAAGATGAGCTTCAAAAAGCTTGTGAAGAATTTGGCCTAAGAGATGTCCCCTTAGAGGAAATGATCCGAGAAGCTGATCAGAATAATGATGGAAGAATAGACTACAATGAATTTGTGGCTATGATGCATAGAGGGAATGCAGAAATGGGTAAGAGGGGTCGAAAGGGTAGCCGTAGTTTTAGCATTGGATTTAGGGAGGCACTACCAGTATGTTAA

Protein sequence

>Msa0307900

MGNNCVGTRTFFSKDESSSRATFPSPSCWSRSKKDSAHKTSPTKPKESVQNNPPPVMKIEKEDEKPPPQQQHQQQHHQKPRQKPQTNEAVVATPAKPKRPHNVKRLASDIFNDVVGSPYYVAPEVLRKRYGPEADVWSAGVILYILLCGVPPFWGESEQDIFEAILNNDLDFSSDPWPSISESAKDLVKKMLVRDPSKRLTAFDVLRHPWIQIDGAAPDKPLDSAVLSRMKQFTAMNKLKKMALRVIAENLSEEEIAGLKEMFKMIDTDNSGHITFEELKVGLKRFGANLKESEIYDLMKAADVDNSGTIDYGEFIAATLHLNKVDREDHLHAAFSYFDKDGSGYITKDELQKACEEFGFRDVPLEEMIREVDQNNDGRIDYNEFVAMMHRGNAEMGKRGRKGSSSFSIGFREALPKGVKEFKFENAWLMKEGFEDIVAGGWERSLDVDVLSRLNSCTDVMNEWGRKLSHMYKDAIEECRAELERLGGSHPWIEIDRAAPDKTLDSAVLSRMKQFTAMNKLKKMALKNLSEEEIAGLKEMIKMIDTDNSGHITFEELKVGLKTFGANLKESETYDLIKAADVDKSGTIDYGEFIAATLHLNKVDREDHLHAAFSYFDKDGSGYITKDELQKACEEFGLRDVPLEEMIREADQNNDGRIDYNEFVAMMHRGNAEMGKRGRKGSRSFSIGFREALPVC*