Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310390 | XP_003593193.2 | 88.083 | 772 | 64 | 7 | 1 | 771 | 1 | 745 | 0.0 | 1335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310390 | sp|Q9C9R6|PUM7_ARATH | 58.213 | 347 | 130 | 4 | 426 | 771 | 318 | 650 | 5.99e-132 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028620 | Msa0310390 | 0.802303 | 5.980099e-49 | -8.615850e-47 |
| Msa0310150 | Msa0310390 | 0.927193 | 1.651905e-91 | -8.615850e-47 |
| Msa0310390 | Msa0395980 | 0.803771 | 2.972771e-49 | -8.615850e-47 |
| Msa0310390 | Msa0709270 | 0.828934 | 6.821063e-55 | -8.615850e-47 |
| Msa0310390 | Msa1132470 | 0.807019 | 6.201752e-50 | -8.615850e-47 |
| Msa0310390 | Msa1226460 | 0.826060 | 3.337246e-54 | -8.615850e-47 |
| Msa0310390 | Msa1236440 | 0.808934 | 2.426059e-50 | -8.615850e-47 |
| Msa0310390 | Msa1372330 | 0.903527 | 3.164403e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310390 | MtrunA17_Chr2g0279101 | 87.671 | 584 | 56 | 6 | 1 | 583 | 1 | 569 | 0.0 | 992 |
| Msa0310390 | MtrunA17_Chr5g0425961 | 56.587 | 334 | 131 | 3 | 438 | 771 | 393 | 712 | 1.15e-124 | 389 |
| Msa0310390 | MtrunA17_Chr2g0279091 | 91.489 | 188 | 15 | 1 | 584 | 771 | 12 | 198 | 2.21e-119 | 357 |
| Msa0310390 | MtrunA17_Chr3g0134501 | 35.866 | 329 | 197 | 2 | 440 | 766 | 211 | 527 | 4.42e-63 | 220 |
| Msa0310390 | MtrunA17_Chr5g0435601 | 31.737 | 334 | 207 | 5 | 438 | 766 | 670 | 987 | 1.40e-48 | 185 |
| Msa0310390 | MtrunA17_Chr5g0435601 | 29.927 | 137 | 94 | 1 | 596 | 732 | 668 | 802 | 1.83e-12 | 71.2 |
| Msa0310390 | MtrunA17_Chr4g0031951 | 31.437 | 334 | 208 | 5 | 438 | 766 | 688 | 1005 | 3.04e-48 | 184 |
| Msa0310390 | MtrunA17_Chr1g0202811 | 31.138 | 334 | 213 | 4 | 442 | 771 | 91 | 411 | 7.09e-48 | 175 |
| Msa0310390 | MtrunA17_Chr2g0328561 | 30.838 | 334 | 210 | 5 | 438 | 766 | 710 | 1027 | 2.67e-47 | 181 |
| Msa0310390 | MtrunA17_Chr2g0328561 | 27.007 | 137 | 98 | 1 | 596 | 732 | 708 | 842 | 2.92e-11 | 67.4 |
| Msa0310390 | MtrunA17_Chr1g0207641 | 29.706 | 340 | 223 | 2 | 430 | 765 | 121 | 448 | 6.47e-46 | 171 |
| Msa0310390 | MtrunA17_Chr1g0199451 | 32.335 | 334 | 205 | 7 | 438 | 766 | 640 | 957 | 1.03e-45 | 176 |
| Msa0310390 | MtrunA17_Chr2g0298151 | 32.036 | 334 | 206 | 7 | 438 | 766 | 654 | 971 | 6.10e-43 | 168 |
| Msa0310390 | MtrunA17_Chr2g0298151 | 24.464 | 233 | 119 | 4 | 434 | 660 | 758 | 939 | 2.30e-13 | 74.3 |
| Msa0310390 | MtrunA17_Chr5g0425331 | 41.209 | 182 | 95 | 1 | 469 | 650 | 17 | 186 | 2.07e-41 | 149 |
| Msa0310390 | MtrunA17_Chr2g0277761 | 26.298 | 289 | 185 | 4 | 442 | 727 | 113 | 376 | 4.85e-28 | 117 |
| Msa0310390 | MtrunA17_Chr5g0425321 | 52.475 | 101 | 42 | 3 | 663 | 761 | 4 | 100 | 1.58e-24 | 100 |
| Msa0310390 | MtrunA17_Chr2g0277741 | 27.306 | 271 | 160 | 7 | 398 | 658 | 75 | 318 | 7.02e-20 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310390 | AT1G78160.2 | 58.213 | 347 | 130 | 4 | 426 | 771 | 320 | 652 | 5.32e-133 | 409 |
| Msa0310390 | AT1G78160.1 | 58.213 | 347 | 130 | 4 | 426 | 771 | 318 | 650 | 6.09e-133 | 409 |
| Msa0310390 | AT1G22240.1 | 58.859 | 333 | 123 | 3 | 438 | 770 | 196 | 514 | 1.33e-129 | 396 |
| Msa0310390 | AT5G56510.4 | 51.775 | 338 | 150 | 3 | 429 | 765 | 265 | 590 | 2.44e-111 | 351 |
| Msa0310390 | AT5G56510.6 | 51.775 | 338 | 150 | 3 | 429 | 765 | 265 | 590 | 2.44e-111 | 351 |
| Msa0310390 | AT5G56510.2 | 51.775 | 338 | 150 | 3 | 429 | 765 | 265 | 590 | 2.44e-111 | 351 |
| Msa0310390 | AT5G56510.1 | 51.775 | 338 | 150 | 3 | 429 | 765 | 265 | 590 | 2.44e-111 | 351 |
| Msa0310390 | AT5G56510.3 | 51.775 | 338 | 150 | 3 | 429 | 765 | 265 | 590 | 2.44e-111 | 351 |
| Msa0310390 | AT1G35730.1 | 51.136 | 352 | 152 | 5 | 424 | 771 | 229 | 564 | 8.35e-107 | 338 |
| Msa0310390 | AT1G35730.2 | 51.136 | 352 | 152 | 5 | 424 | 771 | 235 | 570 | 1.16e-106 | 338 |
| Msa0310390 | AT4G08840.1 | 50.746 | 335 | 149 | 4 | 437 | 771 | 238 | 556 | 2.00e-106 | 337 |
| Msa0310390 | AT5G56510.5 | 53.074 | 309 | 132 | 3 | 429 | 736 | 265 | 561 | 2.19e-104 | 332 |
| Msa0310390 | AT1G35750.1 | 47.283 | 368 | 165 | 6 | 412 | 771 | 182 | 528 | 7.66e-99 | 316 |
| Msa0310390 | AT2G29200.1 | 31.138 | 334 | 209 | 5 | 438 | 766 | 628 | 945 | 8.12e-48 | 183 |
| Msa0310390 | AT2G29200.1 | 25.547 | 137 | 100 | 1 | 596 | 732 | 626 | 760 | 3.30e-11 | 67.8 |
| Msa0310390 | AT2G29200.2 | 31.138 | 334 | 209 | 5 | 438 | 766 | 628 | 945 | 8.12e-48 | 183 |
| Msa0310390 | AT2G29200.2 | 25.547 | 137 | 100 | 1 | 596 | 732 | 626 | 760 | 3.30e-11 | 67.8 |
| Msa0310390 | AT2G29140.2 | 31.138 | 334 | 209 | 5 | 438 | 766 | 624 | 941 | 1.14e-47 | 182 |
| Msa0310390 | AT2G29140.2 | 25.547 | 137 | 100 | 1 | 596 | 732 | 622 | 756 | 4.88e-11 | 67.0 |
| Msa0310390 | AT2G29140.1 | 31.138 | 334 | 209 | 5 | 438 | 766 | 624 | 941 | 1.14e-47 | 182 |
| Msa0310390 | AT2G29140.1 | 25.547 | 137 | 100 | 1 | 596 | 732 | 622 | 756 | 4.88e-11 | 67.0 |
| Msa0310390 | AT2G29190.2 | 30.838 | 334 | 210 | 5 | 438 | 766 | 632 | 949 | 6.89e-47 | 180 |
| Msa0310390 | AT2G29190.2 | 27.007 | 137 | 98 | 1 | 596 | 732 | 630 | 764 | 5.04e-12 | 70.1 |
| Msa0310390 | AT2G29190.1 | 30.838 | 334 | 210 | 5 | 438 | 766 | 632 | 949 | 6.89e-47 | 180 |
| Msa0310390 | AT2G29190.1 | 27.007 | 137 | 98 | 1 | 596 | 732 | 630 | 764 | 5.04e-12 | 70.1 |
| Msa0310390 | AT3G20250.1 | 31.437 | 334 | 208 | 5 | 438 | 766 | 578 | 895 | 1.69e-44 | 173 |
| Msa0310390 | AT3G20250.1 | 25.444 | 169 | 123 | 2 | 602 | 770 | 582 | 747 | 6.34e-12 | 69.7 |
| Msa0310390 | AT3G20250.3 | 31.437 | 334 | 208 | 5 | 438 | 766 | 614 | 931 | 1.87e-44 | 173 |
| Msa0310390 | AT3G20250.3 | 25.444 | 169 | 123 | 2 | 602 | 770 | 618 | 783 | 8.62e-12 | 69.3 |
| Msa0310390 | AT3G20250.2 | 31.437 | 334 | 208 | 5 | 438 | 766 | 614 | 931 | 1.87e-44 | 173 |
| Msa0310390 | AT3G20250.2 | 25.444 | 169 | 123 | 2 | 602 | 770 | 618 | 783 | 8.62e-12 | 69.3 |
| Msa0310390 | AT4G08560.1 | 34.030 | 335 | 188 | 7 | 414 | 736 | 128 | 441 | 4.72e-44 | 166 |
| Msa0310390 | AT3G10360.1 | 30.838 | 334 | 210 | 5 | 438 | 766 | 662 | 979 | 6.78e-44 | 171 |
| Msa0310390 | AT4G25880.4 | 29.341 | 334 | 215 | 6 | 438 | 766 | 530 | 847 | 5.59e-40 | 159 |
| Msa0310390 | AT4G25880.1 | 29.341 | 334 | 215 | 6 | 438 | 766 | 530 | 847 | 6.01e-40 | 159 |
| Msa0310390 | AT4G25880.5 | 29.341 | 334 | 215 | 6 | 438 | 766 | 530 | 847 | 6.01e-40 | 159 |
| Msa0310390 | AT5G43090.1 | 29.462 | 353 | 229 | 5 | 419 | 766 | 187 | 524 | 1.19e-39 | 154 |
| Msa0310390 | AT5G43110.1 | 31.889 | 323 | 199 | 7 | 449 | 766 | 209 | 515 | 2.72e-38 | 150 |
| Msa0310390 | AT4G25880.3 | 28.797 | 316 | 204 | 6 | 456 | 766 | 542 | 841 | 1.43e-36 | 148 |
| Msa0310390 | AT4G25880.3 | 24.664 | 223 | 147 | 4 | 443 | 659 | 601 | 808 | 2.34e-14 | 77.8 |
| Msa0310390 | AT4G25880.2 | 28.797 | 316 | 204 | 6 | 456 | 766 | 542 | 841 | 1.95e-36 | 147 |
| Msa0310390 | AT4G25880.2 | 24.664 | 223 | 147 | 4 | 443 | 659 | 601 | 808 | 2.75e-14 | 77.4 |
| Msa0310390 | AT5G59280.1 | 24.797 | 246 | 163 | 6 | 523 | 761 | 90 | 320 | 5.25e-13 | 71.6 |
| Msa0310390 | AT1G35850.1 | 29.545 | 176 | 116 | 4 | 595 | 763 | 120 | 294 | 1.14e-12 | 70.1 |
| Msa0310390 | AT5G09610.1 | 23.256 | 215 | 148 | 5 | 520 | 733 | 263 | 461 | 1.70e-12 | 71.2 |
| Msa0310390 | AT5G60110.1 | 25.385 | 260 | 174 | 5 | 502 | 757 | 68 | 311 | 1.81e-12 | 69.7 |
| Msa0310390 | AT1G35850.2 | 29.545 | 176 | 116 | 4 | 595 | 763 | 73 | 247 | 2.17e-12 | 68.6 |
| Msa0310390 | AT5G60180.1 | 25.000 | 260 | 175 | 5 | 502 | 757 | 68 | 311 | 8.47e-12 | 67.8 |
Find 155 sgRNAs with CRISPR-Local
Find 374 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTTGGCATTGATCATTT+TGG | 0.147312 | 2_4:-5180916 | Msa0310390:three_prime_UTR |
| CAGAATGCTGCGCATGAATT+TGG | 0.214989 | 2_4:-5185869 | Msa0310390:CDS |
| CTGCTAGCTCAAGATAAATA+TGG | 0.220919 | 2_4:-5181765 | Msa0310390:CDS |
| CTTGAATAGCGAATGCATTT+TGG | 0.222759 | 2_4:+5181837 | None:intergenic |
| GGATCAGCAGGGTCTGTTCC+TGG | 0.233679 | 2_4:-5186298 | Msa0310390:CDS |
| AAACAGGAAAATTATGGTTT+TGG | 0.258380 | 2_4:-5186913 | Msa0310390:CDS |
| CTTCTGCGAGAAAATCTTCT+TGG | 0.259288 | 2_4:+5180963 | None:intergenic |
| CTTCATCAAACATTCTTTGC+AGG | 0.262586 | 2_4:+5185666 | None:intergenic |
| CTATGTTGTTCAATATGTTT+TGG | 0.272074 | 2_4:-5181551 | Msa0310390:CDS |
| CCCTTCATGATGGTAATTCT+AGG | 0.273329 | 2_4:-5186039 | Msa0310390:CDS |
| TGAGGGGAGCTTCATCTTAC+AGG | 0.286860 | 2_4:-5185942 | Msa0310390:CDS |
| CGATGTTCCCGTTCCGGTTC+CGG | 0.289351 | 2_4:+5186687 | None:intergenic |
| GAACTTATGATGAGTCCTTT+TGG | 0.297058 | 2_4:-5185590 | Msa0310390:CDS |
| CTTAAATCCACCATGTCTTC+TGG | 0.297159 | 2_4:-5186712 | Msa0310390:CDS |
| ATTTCGACAAATTGCTTTGT+AGG | 0.304345 | 2_4:+5180996 | None:intergenic |
| AACCAGAATATGTTGTTGTT+AGG | 0.305338 | 2_4:+5186652 | None:intergenic |
| ATTCTCATAAAAGACAATAA+TGG | 0.330320 | 2_4:-5185238 | Msa0310390:CDS |
| TCACTTTATGCACAAACATA+TGG | 0.336254 | 2_4:-5186109 | Msa0310390:CDS |
| TCGAGGGTGCATATATTTAA+TGG | 0.336819 | 2_4:-5185714 | Msa0310390:CDS |
| GTAATGAAACAGGAAAATTA+TGG | 0.339178 | 2_4:-5186919 | Msa0310390:CDS |
| CACGAAGTAGCTAATTCATT+TGG | 0.340510 | 2_4:-5186319 | Msa0310390:CDS |
| TTTGTTTGATATGGTGAAAC+AGG | 0.346707 | 2_4:-5187046 | None:intergenic |
| TCATGTGGTTCAGCATTGTT+TGG | 0.351537 | 2_4:-5185212 | Msa0310390:CDS |
| TCAGCTCCATGATGACTGAT+AGG | 0.354625 | 2_4:+5186367 | None:intergenic |
| GCCCTAACAACAACATATTC+TGG | 0.367339 | 2_4:-5186654 | Msa0310390:CDS |
| TTATTATAATTATCAATGAT+TGG | 0.370630 | 2_4:+5186478 | None:intergenic |
| TGACTAGCTGCTCTGGCTCC+TGG | 0.372853 | 2_4:+5185495 | None:intergenic |
| CCTTGTTATCTTCATTTCTC+AGG | 0.377131 | 2_4:+5185185 | None:intergenic |
| TGTGAAAATCCTAGACGTTA+TGG | 0.381445 | 2_4:-5185788 | Msa0310390:CDS |
| GATCAGCAGGGTCTGTTCCT+GGG | 0.389571 | 2_4:-5186297 | Msa0310390:CDS |
| GTGAAAATCCTAGACGTTAT+GGG | 0.391224 | 2_4:-5185787 | Msa0310390:CDS |
| TCATGATCATGTAATGAAAC+AGG | 0.393500 | 2_4:-5186929 | Msa0310390:CDS |
| GCCATACGATGTTCCCGTTC+CGG | 0.398586 | 2_4:+5186681 | None:intergenic |
| AATCATACTGATGGCTATCC+AGG | 0.401732 | 2_4:-5185513 | Msa0310390:CDS |
| CATGCGGATCTTGAAGCAAT+AGG | 0.404284 | 2_4:+5181356 | None:intergenic |
| GAGAAAATCTTCTTGGAATA+CGG | 0.404795 | 2_4:+5180970 | None:intergenic |
| TTCTAAGATTCCTGATTTCA+AGG | 0.405786 | 2_4:-5186626 | Msa0310390:CDS |
| TCTGGAACCGGAACCGGAAC+GGG | 0.405960 | 2_4:-5186694 | Msa0310390:CDS |
| TGTGGGATTCTAGCATTTGA+AGG | 0.408592 | 2_4:+5185995 | None:intergenic |
| ATGTCTTCTGGAACCGGAAC+CGG | 0.408619 | 2_4:-5186700 | Msa0310390:CDS |
| TTATCTTATACAGAAGTTGT+TGG | 0.415364 | 2_4:-5185564 | Msa0310390:CDS |
| ACCAGAATATGTTGTTGTTA+GGG | 0.422829 | 2_4:+5186653 | None:intergenic |
| TCCACCATGTCTTCTGGAAC+CGG | 0.427474 | 2_4:-5186706 | Msa0310390:CDS |
| GGGCCATGTGTATAATTCAT+TGG | 0.431261 | 2_4:-5181034 | Msa0310390:CDS |
| GCTAATTCATTTGGATCAGC+AGG | 0.436453 | 2_4:-5186310 | Msa0310390:CDS |
| TCAGTGTTGTCCTTGAAATC+AGG | 0.438553 | 2_4:+5186616 | None:intergenic |
| ACTTTGTCTCTGCAGTTTGA+AGG | 0.440803 | 2_4:-5181502 | Msa0310390:CDS |
| AACTGCACAATGCAAAGAAC+AGG | 0.448307 | 2_4:+5181927 | None:intergenic |
| TTGTATTCAATGATGAGAAT+CGG | 0.449173 | 2_4:-5181420 | Msa0310390:CDS |
| ATCGTCTCTCTTCTATGATA+AGG | 0.450977 | 2_4:+5186214 | None:intergenic |
| TACTCTCAATTGAATGACTT+TGG | 0.458109 | 2_4:-5186253 | Msa0310390:CDS |
| CAAGAGGTTCAGATCGATCA+AGG | 0.470903 | 2_4:-5185895 | Msa0310390:CDS |
| TTAATGGCCAAAGATCAAAA+TGG | 0.470941 | 2_4:-5185698 | Msa0310390:CDS |
| TTTGAAGGTGGCACAGCTCT+AGG | 0.472402 | 2_4:+5186010 | None:intergenic |
| GAATGACTTTGGTGGTTCAA+TGG | 0.473627 | 2_4:-5186242 | Msa0310390:CDS |
| TACTTAGGTTGCAAAGTGAA+TGG | 0.478020 | 2_4:+5185755 | None:intergenic |
| AAGGATGGTGTAACAATCTC+AGG | 0.481086 | 2_4:+5186160 | None:intergenic |
| TGCTAGCTCAAGATAAATAT+GGG | 0.483216 | 2_4:-5181764 | Msa0310390:intron |
| AGAACTAGACATTCAACAAC+AGG | 0.484003 | 2_4:-5185822 | Msa0310390:CDS |
| AGCTGAAGTGTGTAGTGTTA+AGG | 0.486520 | 2_4:-5180757 | Msa0310390:three_prime_UTR |
| TGTATAAGATAATTTCCAAA+AGG | 0.487006 | 2_4:+5185575 | None:intergenic |
| AGGACAACACTGAGTCTAAG+AGG | 0.487330 | 2_4:-5186606 | Msa0310390:CDS |
| CAGCTCCATGATGACTGATA+GGG | 0.488407 | 2_4:+5186368 | None:intergenic |
| TCTTCATCAACTGTCACTAC+TGG | 0.489811 | 2_4:-5186829 | Msa0310390:CDS |
| TTAAATTATGTTGGTGCAAG+AGG | 0.491719 | 2_4:-5185911 | Msa0310390:CDS |
| GACAAAGTTGTGGCAGCAGA+TGG | 0.492022 | 2_4:+5181517 | None:intergenic |
| TGATAGGGCTTCTCAACATA+GGG | 0.492363 | 2_4:+5186383 | None:intergenic |
| ATGCACATTGGTTGTAGTAA+TGG | 0.493510 | 2_4:-5186553 | Msa0310390:CDS |
| AACAGCTGAATTTCTTCTCA+AGG | 0.494294 | 2_4:+5186141 | None:intergenic |
| CTGCAAAGAATGTTTGATGA+AGG | 0.496345 | 2_4:-5185665 | Msa0310390:CDS |
| ATAGAAAACGTGAAAGATGA+TGG | 0.496793 | 2_4:-5187021 | Msa0310390:CDS |
| TGCACCCTCGAGCTTCCGAC+AGG | 0.497426 | 2_4:+5185726 | None:intergenic |
| TCAACTGTCACTACTGGAAG+TGG | 0.499230 | 2_4:-5186823 | Msa0310390:CDS |
| CTGATAGGGCTTCTCAACAT+AGG | 0.499552 | 2_4:+5186382 | None:intergenic |
| CTATATCTACATGTCCTTGT+GGG | 0.502057 | 2_4:+5185978 | None:intergenic |
| GTAAAATCACTAACATTACT+AGG | 0.502446 | 2_4:+5186511 | None:intergenic |
| GTTGTATCAGCTCTTGAACC+AGG | 0.504169 | 2_4:-5185268 | Msa0310390:CDS |
| ATAAAAGATGATGGTGTTGT+TGG | 0.506639 | 2_4:+5186742 | None:intergenic |
| TGTATTCAATGATGAGAATC+GGG | 0.507830 | 2_4:-5181419 | Msa0310390:CDS |
| GAGATTCTGACTAGCTGCTC+TGG | 0.512190 | 2_4:+5185488 | None:intergenic |
| ATGTTATTCAGAAAGCTCTT+CGG | 0.512204 | 2_4:-5181327 | Msa0310390:CDS |
| TGGGGAGTATAGACGAAGAT+TGG | 0.515445 | 2_4:-5181814 | Msa0310390:CDS |
| GGTGAAGGATTAAATTATGT+TGG | 0.517227 | 2_4:-5185920 | Msa0310390:CDS |
| GACATTCAACAACAGGTTGT+GGG | 0.519264 | 2_4:-5185815 | Msa0310390:CDS |
| AATGTTTGATGAAGGCAGAA+TGG | 0.520141 | 2_4:-5185657 | Msa0310390:CDS |
| TAACAACAACATATTCTGGT+TGG | 0.521980 | 2_4:-5186650 | Msa0310390:CDS |
| AGAAAATCTTCTTGGAATAC+GGG | 0.522564 | 2_4:+5180971 | None:intergenic |
| ACCGGAACGGGAACATCGTA+TGG | 0.525131 | 2_4:-5186682 | Msa0310390:CDS |
| TTATGCACAAACATATGGAA+TGG | 0.525210 | 2_4:-5186104 | Msa0310390:CDS |
| TCCGACAGGGAATTATACTT+AGG | 0.529691 | 2_4:+5185740 | None:intergenic |
| AATGATTACTATTGTAGAGG+AGG | 0.530658 | 2_4:-5186190 | Msa0310390:CDS |
| ATAGATTCAATTACAAGTGA+GGG | 0.534007 | 2_4:-5185959 | Msa0310390:CDS |
| TCCTAGAATTACCATCATGA+AGG | 0.537016 | 2_4:+5186038 | None:intergenic |
| AATTAGCTACTTCGTGAGCT+CGG | 0.538866 | 2_4:+5186326 | None:intergenic |
| GCTGAATTTCTTCTCAAGGA+TGG | 0.539593 | 2_4:+5186145 | None:intergenic |
| CCTTTCGATTCCCTTCATGA+TGG | 0.541420 | 2_4:-5186049 | Msa0310390:CDS |
| AGCTTCATCTTACAGGGTGA+AGG | 0.541700 | 2_4:-5185935 | Msa0310390:CDS |
| CAACAACATGAGATCATACA+AGG | 0.546950 | 2_4:+5180811 | None:intergenic |
| AGACATTCAACAACAGGTTG+TGG | 0.547410 | 2_4:-5185816 | Msa0310390:CDS |
| CCAAAGATCAAAATGGTGGC+AGG | 0.548762 | 2_4:-5185691 | Msa0310390:CDS |
| AATCCTAGACGTTATGGGAC+TGG | 0.548947 | 2_4:-5185782 | Msa0310390:CDS |
| AGAAGCCCTATCAGTCATCA+TGG | 0.551379 | 2_4:-5186373 | Msa0310390:CDS |
| AAATGATGTATATTATCCCT+TGG | 0.551531 | 2_4:-5180931 | Msa0310390:exon |
| TCTCAATTGAATGACTTTGG+TGG | 0.552124 | 2_4:-5186250 | Msa0310390:CDS |
| CTCCAAAATGATCAATGCCA+AGG | 0.553146 | 2_4:+5180914 | None:intergenic |
| AAGAGGTTTGTTGATCTATG+TGG | 0.553636 | 2_4:-5186589 | Msa0310390:CDS |
| AGATCCTCCATAAAAGATGA+TGG | 0.554187 | 2_4:+5186733 | None:intergenic |
| TTCTGGAACCGGAACCGGAA+CGG | 0.554890 | 2_4:-5186695 | Msa0310390:CDS |
| TAATAATCATGATAAGTATG+TGG | 0.560653 | 2_4:-5186461 | Msa0310390:CDS |
| AGAATCTCGTTAAATACTCA+CGG | 0.564286 | 2_4:-5185473 | Msa0310390:CDS |
| GAAAGCTCTTCGGCATTCTG+AGG | 0.570031 | 2_4:-5181317 | Msa0310390:intron |
| CCTAGAATTACCATCATGAA+GGG | 0.574055 | 2_4:+5186039 | None:intergenic |
| CCTGAGAAATGAAGATAACA+AGG | 0.574084 | 2_4:-5185185 | Msa0310390:intron |
| GCTTTGCTAAGCATCGACAT+AGG | 0.575205 | 2_4:-5185847 | Msa0310390:CDS |
| TCCAAAATGATCAATGCCAA+GGG | 0.583729 | 2_4:+5180915 | None:intergenic |
| ATGTCTCGCACGCGCAACCC+AGG | 0.586305 | 2_4:+5186280 | None:intergenic |
| AAATGCATTCGCTATTCAAG+TGG | 0.589005 | 2_4:-5181834 | Msa0310390:CDS |
| CAACCAATGAATTATACACA+TGG | 0.591623 | 2_4:+5181031 | None:intergenic |
| AATTTCAGTAAAATGCACAT+TGG | 0.593249 | 2_4:-5186565 | Msa0310390:CDS |
| TATAGATTCAATTACAAGTG+AGG | 0.594171 | 2_4:-5185960 | Msa0310390:CDS |
| GAGGATGCAAATCATACTGA+TGG | 0.594495 | 2_4:-5185522 | Msa0310390:CDS |
| GAACCAGTCCCATAACGTCT+AGG | 0.595012 | 2_4:+5185779 | None:intergenic |
| TCTATATCTACATGTCCTTG+TGG | 0.595100 | 2_4:+5185977 | None:intergenic |
| ATGAATGATTACTATTGTAG+AGG | 0.598847 | 2_4:-5186193 | Msa0310390:CDS |
| TGAATAACATAATTTGCATG+CGG | 0.598945 | 2_4:+5181340 | None:intergenic |
| GATGTTGATAGTTATAAGAG+TGG | 0.603597 | 2_4:-5186439 | Msa0310390:CDS |
| GAATCTCGTTAAATACTCAC+GGG | 0.609623 | 2_4:-5185472 | Msa0310390:intron |
| AATGCATTCGCTATTCAAGT+GGG | 0.610160 | 2_4:-5181833 | Msa0310390:CDS |
| TCAGTCATCATGGAGCTGAA+AGG | 0.617201 | 2_4:-5186363 | Msa0310390:CDS |
| AATTCCCTGTCGGAAGCTCG+AGG | 0.620853 | 2_4:-5185731 | Msa0310390:CDS |
| ATTCCCTGTCGGAAGCTCGA+GGG | 0.623375 | 2_4:-5185730 | Msa0310390:CDS |
| ACCTAAGTATAATTCCCTGT+CGG | 0.624286 | 2_4:-5185741 | Msa0310390:CDS |
| GGGATTCTAGCATTTGAAGG+TGG | 0.630125 | 2_4:+5185998 | None:intergenic |
| CCATCATGAAGGGAATCGAA+AGG | 0.630370 | 2_4:+5186049 | None:intergenic |
| AGACAATAATGGAAATCATG+TGG | 0.631411 | 2_4:-5185227 | Msa0310390:CDS |
| TAACGAGATCATTGTTCACG+TGG | 0.632518 | 2_4:-5185615 | Msa0310390:CDS |
| AACAAAATAGTACATTCGCA+TGG | 0.632789 | 2_4:+5180835 | None:intergenic |
| GAGGGGAGCTTCATCTTACA+GGG | 0.636871 | 2_4:-5185941 | Msa0310390:CDS |
| CGAGATCATTGTTCACGTGG+TGG | 0.640249 | 2_4:-5185612 | Msa0310390:CDS |
| GGTTCCGGTTCCAGAAGACA+TGG | 0.640777 | 2_4:+5186702 | None:intergenic |
| TTGTGTGATGATGTTGCGTG+AGG | 0.656487 | 2_4:+5186967 | None:intergenic |
| CTAATTCATTTGGATCAGCA+GGG | 0.658477 | 2_4:-5186309 | Msa0310390:CDS |
| GCACCCTCGAGCTTCCGACA+GGG | 0.665749 | 2_4:+5185727 | None:intergenic |
| TAGATTCAATTACAAGTGAG+GGG | 0.668837 | 2_4:-5185958 | Msa0310390:CDS |
| TGAAGCAATAGGTCAAAGTG+AGG | 0.671711 | 2_4:+5181367 | None:intergenic |
| GCAGAAGTTCAGTAGTCGTG+TGG | 0.674580 | 2_4:-5181458 | Msa0310390:CDS |
| ATGGCCAAAGATCAAAATGG+TGG | 0.675905 | 2_4:-5185695 | Msa0310390:CDS |
| ATGTATGTAGTGAAGAGCAG+AGG | 0.679168 | 2_4:-5185541 | Msa0310390:CDS |
| TCCGGTTCCAGAAGACATGG+TGG | 0.681644 | 2_4:+5186705 | None:intergenic |
| TGTGTGATGATGTTGCGTGA+GGG | 0.684998 | 2_4:+5186968 | None:intergenic |
| AAACTGCAGAGACAAAGTTG+TGG | 0.698853 | 2_4:+5181507 | None:intergenic |
| GACATTGCAACTCATCAACA+TGG | 0.702668 | 2_4:-5181873 | Msa0310390:CDS |
| ATGCATTCGCTATTCAAGTG+GGG | 0.705246 | 2_4:-5181832 | Msa0310390:CDS |
| GATAGGGCTTCTCAACATAG+GGG | 0.716456 | 2_4:+5186384 | None:intergenic |
| TCAAATGCTAGAATCCCACA+AGG | 0.744347 | 2_4:-5185992 | Msa0310390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATAATTATCAATGAT+TGG | + | chr2_4:5181297-5181316 | None:intergenic | 10.0% |
| !! | ATTGTAAACAAAATATAAAA+AGG | + | chr2_4:5183353-5183372 | None:intergenic | 10.0% |
| !! | ATAATAATAATAATAGAACT+GGG | + | chr2_4:5184102-5184121 | None:intergenic | 10.0% |
| !! | AATAATAATAATAATAGAAC+TGG | + | chr2_4:5184103-5184122 | None:intergenic | 10.0% |
| !! | ATGATTCAAATTAAATTATA+GGG | - | chr2_4:5185684-5185703 | Msa0310390:CDS | 10.0% |
| !! | ATTTCTTATGAATATAAATT+TGG | - | chr2_4:5186046-5186065 | Msa0310390:CDS | 10.0% |
| !!! | TTTCTTAATTCTTTTTTGAA+CGG | - | chr2_4:5182619-5182638 | Msa0310390:intron | 15.0% |
| !! | TATACTTGATATTCTAATAA+AGG | - | chr2_4:5182899-5182918 | Msa0310390:intron | 15.0% |
| !! | TAAAACAAAATAACAAGAAT+AGG | - | chr2_4:5183223-5183242 | Msa0310390:intron | 15.0% |
| !! | TGTATTTCATCATTAAATAA+TGG | - | chr2_4:5183315-5183334 | Msa0310390:intron | 15.0% |
| !! | TAATAATAATAATAGAACTG+GGG | + | chr2_4:5184101-5184120 | None:intergenic | 15.0% |
| !! | TAATGAAAATACTATTTCAA+AGG | + | chr2_4:5184961-5184980 | None:intergenic | 15.0% |
| !!! | TTAAAATGTTTTCATGAAAA+TGG | - | chr2_4:5185418-5185437 | Msa0310390:intron | 15.0% |
| !! | GATGATTCAAATTAAATTAT+AGG | - | chr2_4:5185683-5185702 | Msa0310390:CDS | 15.0% |
| !! | AAATTAAATTATAGGGTAAA+GGG | - | chr2_4:5185691-5185710 | Msa0310390:CDS | 15.0% |
| !! | TTTATGTATACTTATAAACT+AGG | - | chr2_4:5186717-5186736 | Msa0310390:CDS | 15.0% |
| !! | TTATGTATACTTATAAACTA+GGG | - | chr2_4:5186718-5186737 | Msa0310390:CDS | 15.0% |
| !! | TAATAATCATGATAAGTATG+TGG | - | chr2_4:5181311-5181330 | Msa0310390:intron | 20.0% |
| !! | TGTATAAGATAATTTCCAAA+AGG | + | chr2_4:5182200-5182219 | None:intergenic | 20.0% |
| !! | ATTCTCATAAAAGACAATAA+TGG | - | chr2_4:5182534-5182553 | Msa0310390:intron | 20.0% |
| !!! | TTCTTAATTCTTTTTTGAAC+GGG | - | chr2_4:5182620-5182639 | Msa0310390:intron | 20.0% |
| !! | AAAAATTGCAAACAAATAGA+AGG | + | chr2_4:5182713-5182732 | None:intergenic | 20.0% |
| !!! | TTTTACCTAATGAAAAATTG+TGG | - | chr2_4:5182755-5182774 | Msa0310390:intron | 20.0% |
| !! | TTAAAATGACACTTTCTAAA+CGG | + | chr2_4:5183058-5183077 | None:intergenic | 20.0% |
| !! | TGTTAATGTTATCAAGTTAA+GGG | + | chr2_4:5183082-5183101 | None:intergenic | 20.0% |
| !! | ATGTTAATGTTATCAAGTTA+AGG | + | chr2_4:5183083-5183102 | None:intergenic | 20.0% |
| !! | TAAAAGAGAGAAAAATAAAG+TGG | - | chr2_4:5183288-5183307 | Msa0310390:intron | 20.0% |
| !! | ATTTCATCATTAAATAATGG+AGG | - | chr2_4:5183318-5183337 | Msa0310390:intron | 20.0% |
| !! | TGTATATATGAAAAACTATG+AGG | + | chr2_4:5183377-5183396 | None:intergenic | 20.0% |
| !!! | TCATAGTTTTTCATATATAC+AGG | - | chr2_4:5183376-5183395 | Msa0310390:intron | 20.0% |
| !! | TCTATAAATGTTGAAAGATT+TGG | - | chr2_4:5183690-5183709 | Msa0310390:intron | 20.0% |
| !! | CTATAAATGTTGAAAGATTT+GGG | - | chr2_4:5183691-5183710 | Msa0310390:intron | 20.0% |
| !! | CCTATTTAAACATAAGATTA+GGG | + | chr2_4:5183748-5183767 | None:intergenic | 20.0% |
| !! | CCTAATCTTATGTTTAAATA+GGG | - | chr2_4:5183746-5183765 | Msa0310390:intron | 20.0% |
| !! | AACTTATTTATTCGAAGAAA+AGG | - | chr2_4:5183771-5183790 | Msa0310390:intron | 20.0% |
| !! | GTATAAAAACATTATGATGA+AGG | + | chr2_4:5184372-5184391 | None:intergenic | 20.0% |
| !!! | AAGCTTTTAAGGTATTATTA+TGG | + | chr2_4:5184801-5184820 | None:intergenic | 20.0% |
| !! | TGAAAATAGGATTTCTAATT+CGG | + | chr2_4:5185180-5185199 | None:intergenic | 20.0% |
| !! | TCAGTTTATGATTTGAAAAT+AGG | + | chr2_4:5185193-5185212 | None:intergenic | 20.0% |
| !!! | TATTTTTACAACGTAAGTAA+AGG | + | chr2_4:5185574-5185593 | None:intergenic | 20.0% |
| !!! | ATTATTGGTTAATTTGCTTT+AGG | + | chr2_4:5185652-5185671 | None:intergenic | 20.0% |
| !! | CAAATTAAATTATAGGGTAA+AGG | - | chr2_4:5185690-5185709 | Msa0310390:CDS | 20.0% |
| ! | GTAATGAAACAGGAAAATTA+TGG | - | chr2_4:5180853-5180872 | Msa0310390:three_prime_UTR | 25.0% |
| !! | AAACAGGAAAATTATGGTTT+TGG | - | chr2_4:5180859-5180878 | Msa0310390:three_prime_UTR | 25.0% |
| !!! | GAAAATTATGGTTTTGGTAA+TGG | - | chr2_4:5180865-5180884 | Msa0310390:three_prime_UTR | 25.0% |
| !! | TCAATCAGATGAATTTTTCA+AGG | - | chr2_4:5180920-5180939 | Msa0310390:three_prime_UTR | 25.0% |
| !! | TTTTCTATTCAATCTGATCA+TGG | - | chr2_4:5180973-5180992 | Msa0310390:CDS | 25.0% |
| ! | AATTTCAGTAAAATGCACAT+TGG | - | chr2_4:5181207-5181226 | Msa0310390:intron | 25.0% |
| ! | GTAAAATCACTAACATTACT+AGG | + | chr2_4:5181264-5181283 | None:intergenic | 25.0% |
| !!! | TAGTTATAAGAGTGGTTTTT+TGG | - | chr2_4:5181341-5181360 | Msa0310390:CDS | 25.0% |
| !!! | TTTTTTGGATTCTGATTATG+TGG | - | chr2_4:5181356-5181375 | Msa0310390:CDS | 25.0% |
| !! | TTTTTGGATTCTGATTATGT+GGG | - | chr2_4:5181357-5181376 | Msa0310390:CDS | 25.0% |
| ! | ATGAATGATTACTATTGTAG+AGG | - | chr2_4:5181579-5181598 | Msa0310390:intron | 25.0% |
| ! | TATAGATTCAATTACAAGTG+AGG | - | chr2_4:5181812-5181831 | Msa0310390:CDS | 25.0% |
| ! | ATAGATTCAATTACAAGTGA+GGG | - | chr2_4:5181813-5181832 | Msa0310390:CDS | 25.0% |
| ! | TTATCTTATACAGAAGTTGT+TGG | - | chr2_4:5182208-5182227 | Msa0310390:intron | 25.0% |
| ! | TTTATGAGAATCAAAAATCC+TGG | + | chr2_4:5182525-5182544 | None:intergenic | 25.0% |
| ! | ATAAAATAGAATAGTGCATC+AGG | + | chr2_4:5182656-5182675 | None:intergenic | 25.0% |
| ! | TGATATTCTAATAAAGGACA+TGG | - | chr2_4:5182905-5182924 | Msa0310390:intron | 25.0% |
| ! | TAAAATGACACTTTCTAAAC+GGG | + | chr2_4:5183057-5183076 | None:intergenic | 25.0% |
| ! | ATCAACAAAGTATGACATAA+AGG | + | chr2_4:5183114-5183133 | None:intergenic | 25.0% |
| ! | ACTCACCATATTTACAAATA+TGG | - | chr2_4:5183137-5183156 | Msa0310390:intron | 25.0% |
| ! | CTCACCATATTTACAAATAT+GGG | - | chr2_4:5183138-5183157 | Msa0310390:intron | 25.0% |
| ! | CAAACCCATATTTGTAAATA+TGG | + | chr2_4:5183145-5183164 | None:intergenic | 25.0% |
| ! | CATATTTACAAATATGGGTT+TGG | - | chr2_4:5183143-5183162 | Msa0310390:intron | 25.0% |
| !! | TAGTTTTTCATATATACAGG+AGG | - | chr2_4:5183379-5183398 | Msa0310390:intron | 25.0% |
| !! | ACTTTGTCTATTTATTGGTT+AGG | + | chr2_4:5183475-5183494 | None:intergenic | 25.0% |
| ! | GTTCTACTTTGTCTATTTAT+TGG | + | chr2_4:5183480-5183499 | None:intergenic | 25.0% |
| ! | CCCTAATCTTATGTTTAAAT+AGG | - | chr2_4:5183745-5183764 | Msa0310390:intron | 25.0% |
| ! | CCCTATTTAAACATAAGATT+AGG | + | chr2_4:5183749-5183768 | None:intergenic | 25.0% |
| ! | TTAACACATGTTATATGTCA+GGG | + | chr2_4:5184279-5184298 | None:intergenic | 25.0% |
| ! | AAGAGTCTTACATTATTAGA+TGG | - | chr2_4:5184297-5184316 | Msa0310390:intron | 25.0% |
| ! | TCTAAGTTAAAAATAGTGAG+GGG | + | chr2_4:5184597-5184616 | None:intergenic | 25.0% |
| ! | CTCTAAGTTAAAAATAGTGA+GGG | + | chr2_4:5184598-5184617 | None:intergenic | 25.0% |
| ! | ACTCTAAGTTAAAAATAGTG+AGG | + | chr2_4:5184599-5184618 | None:intergenic | 25.0% |
| ! | TTGTTAAACAACCTTAAAAC+AGG | - | chr2_4:5184630-5184649 | Msa0310390:intron | 25.0% |
| !! | CATTTGAATTTCCTGTTTTA+AGG | + | chr2_4:5184644-5184663 | None:intergenic | 25.0% |
| !!! | ACTGACATTTGGATTTTTTA+GGG | + | chr2_4:5184920-5184939 | None:intergenic | 25.0% |
| !! | GTTTTATCAATAGAATGCAA+TGG | + | chr2_4:5185011-5185030 | None:intergenic | 25.0% |
| ! | TTTCCTCAAAAATCTCAATT+TGG | - | chr2_4:5185231-5185250 | Msa0310390:CDS | 25.0% |
| ! | TTCCTCAAAAATCTCAATTT+GGG | - | chr2_4:5185232-5185251 | Msa0310390:CDS | 25.0% |
| !! | TGATTCTCATTCAAGTTATT+TGG | + | chr2_4:5185264-5185283 | None:intergenic | 25.0% |
| !!! | TCTAAAACATAGCTTGTTTT+AGG | - | chr2_4:5185464-5185483 | Msa0310390:intron | 25.0% |
| ! | CATCACAAACTAATCATTAT+TGG | + | chr2_4:5185667-5185686 | None:intergenic | 25.0% |
| !!! | ACTACTGATTTAGTTGATTT+AGG | - | chr2_4:5185769-5185788 | Msa0310390:CDS | 25.0% |
| !! | CTATGTTGTTCAATATGTTT+TGG | - | chr2_4:5186221-5186240 | Msa0310390:CDS | 25.0% |
| ! | TTGTATTCAATGATGAGAAT+CGG | - | chr2_4:5186352-5186371 | Msa0310390:CDS | 25.0% |
| !! | TGAATAACATAATTTGCATG+CGG | + | chr2_4:5186435-5186454 | None:intergenic | 25.0% |
| ! | AAATGATGTATATTATCCCT+TGG | - | chr2_4:5186841-5186860 | Msa0310390:CDS | 25.0% |
| ATAGAAAACGTGAAAGATGA+TGG | - | chr2_4:5180751-5180770 | Msa0310390:three_prime_UTR | 30.0% | |
| TCATGATCATGTAATGAAAC+AGG | - | chr2_4:5180843-5180862 | Msa0310390:three_prime_UTR | 30.0% | |
| !! | TCAAGCTTGTTTTCTGATAA+TGG | - | chr2_4:5181003-5181022 | Msa0310390:CDS | 30.0% |
| !! | ATAAAAGATGATGGTGTTGT+TGG | + | chr2_4:5181033-5181052 | None:intergenic | 30.0% |
| ! | AACAACACCATCATCTTTTA+TGG | - | chr2_4:5181032-5181051 | Msa0310390:CDS | 30.0% |
| ! | ACCAGAATATGTTGTTGTTA+GGG | + | chr2_4:5181122-5181141 | None:intergenic | 30.0% |
| ! | AACCAGAATATGTTGTTGTT+AGG | + | chr2_4:5181123-5181142 | None:intergenic | 30.0% |
| TAACAACAACATATTCTGGT+TGG | - | chr2_4:5181122-5181141 | Msa0310390:intron | 30.0% | |
| !! | TTCTAAGATTCCTGATTTCA+AGG | - | chr2_4:5181146-5181165 | Msa0310390:intron | 30.0% |
| !! | GATGTTGATAGTTATAAGAG+TGG | - | chr2_4:5181333-5181352 | Msa0310390:CDS | 30.0% |
| ! | TTTTGGATTCTGATTATGTG+GGG | - | chr2_4:5181358-5181377 | Msa0310390:CDS | 30.0% |
| TACTCTCAATTGAATGACTT+TGG | - | chr2_4:5181519-5181538 | Msa0310390:CDS | 30.0% | |
| AATGATTACTATTGTAGAGG+AGG | - | chr2_4:5181582-5181601 | Msa0310390:intron | 30.0% | |
| TCACTTTATGCACAAACATA+TGG | - | chr2_4:5181663-5181682 | Msa0310390:intron | 30.0% | |
| TTATGCACAAACATATGGAA+TGG | - | chr2_4:5181668-5181687 | Msa0310390:intron | 30.0% | |
| TAGATTCAATTACAAGTGAG+GGG | - | chr2_4:5181814-5181833 | Msa0310390:CDS | 30.0% | |
| GGTGAAGGATTAAATTATGT+TGG | - | chr2_4:5181852-5181871 | Msa0310390:CDS | 30.0% | |
| TTAAATTATGTTGGTGCAAG+AGG | - | chr2_4:5181861-5181880 | Msa0310390:CDS | 30.0% | |
| TTAATGGCCAAAGATCAAAA+TGG | - | chr2_4:5182074-5182093 | Msa0310390:intron | 30.0% | |
| AGAATCTCGTTAAATACTCA+CGG | - | chr2_4:5182299-5182318 | Msa0310390:intron | 30.0% | |
| ! | GTAGTCATGCAACTATTTTA+AGG | - | chr2_4:5182322-5182341 | Msa0310390:intron | 30.0% |
| GTTCAACTTATCACGTTATA+AGG | + | chr2_4:5182377-5182396 | None:intergenic | 30.0% | |
| ! | AGACAATAATGGAAATCATG+TGG | - | chr2_4:5182545-5182564 | Msa0310390:intron | 30.0% |
| ACTCGTCTTTCTTTCAATTA+TGG | - | chr2_4:5182778-5182797 | Msa0310390:intron | 30.0% | |
| TCTTTCTTTCAATTATGGTC+TGG | - | chr2_4:5182783-5182802 | Msa0310390:intron | 30.0% | |
| AAAATGACACTTTCTAAACG+GGG | + | chr2_4:5183056-5183075 | None:intergenic | 30.0% | |
| GACTATAAAATGACTCAGAA+TGG | - | chr2_4:5183265-5183284 | Msa0310390:intron | 30.0% | |
| ! | CATTAAATAATGGAGGCTAA+TGG | - | chr2_4:5183325-5183344 | Msa0310390:intron | 30.0% |
| GCATTATTCACTAGTTAGTT+GGG | + | chr2_4:5183453-5183472 | None:intergenic | 30.0% | |
| ACAAAGTAGAACAGAAAAGA+AGG | - | chr2_4:5183488-5183507 | Msa0310390:intron | 30.0% | |
| CAAAGTAGAACAGAAAAGAA+GGG | - | chr2_4:5183489-5183508 | Msa0310390:intron | 30.0% | |
| CAAAGACAAATAGAGAACAA+AGG | - | chr2_4:5183527-5183546 | Msa0310390:intron | 30.0% | |
| TGTTGAAAGATTTGGGAAAA+AGG | - | chr2_4:5183698-5183717 | Msa0310390:intron | 30.0% | |
| ATTGGGTACTTAATAGGTAA+CGG | + | chr2_4:5183910-5183929 | None:intergenic | 30.0% | |
| TACCTATTAAGTACCCAATT+AGG | - | chr2_4:5183911-5183930 | Msa0310390:intron | 30.0% | |
| ACCTATTAAGTACCCAATTA+GGG | - | chr2_4:5183912-5183931 | Msa0310390:intron | 30.0% | |
| GAAAAAGTTTCTCCCTAATT+GGG | + | chr2_4:5183927-5183946 | None:intergenic | 30.0% | |
| ! | CAATTAGGGAGAAACTTTTT+CGG | - | chr2_4:5183926-5183945 | Msa0310390:intron | 30.0% |
| !! | AATTAGGGAGAAACTTTTTC+GGG | - | chr2_4:5183927-5183946 | Msa0310390:intron | 30.0% |
| TAACACATGTTATATGTCAG+GGG | + | chr2_4:5184278-5184297 | None:intergenic | 30.0% | |
| CTTAACACATGTTATATGTC+AGG | + | chr2_4:5184280-5184299 | None:intergenic | 30.0% | |
| TATTAGATGGTACGTTAAGT+AGG | - | chr2_4:5184310-5184329 | Msa0310390:intron | 30.0% | |
| AAATCCCAACAGAAAAACAA+AGG | + | chr2_4:5184336-5184355 | None:intergenic | 30.0% | |
| ! | CTGCATTGAATTTTATGAGA+AGG | + | chr2_4:5184547-5184566 | None:intergenic | 30.0% |
| CAATACAAAACTGTGGAATA+GGG | + | chr2_4:5184685-5184704 | None:intergenic | 30.0% | |
| ACAATAGCAATACAAAACTG+TGG | + | chr2_4:5184692-5184711 | None:intergenic | 30.0% | |
| !!! | TTTTTTGCTAACTTAACAGC+TGG | + | chr2_4:5184776-5184795 | None:intergenic | 30.0% |
| !!! | AAGAAGCCAAATGCTATTTT+GGG | + | chr2_4:5184824-5184843 | None:intergenic | 30.0% |
| !! | AAAGAAGCCAAATGCTATTT+TGG | + | chr2_4:5184825-5184844 | None:intergenic | 30.0% |
| !!! | GACTGACATTTGGATTTTTT+AGG | + | chr2_4:5184921-5184940 | None:intergenic | 30.0% |
| AATAGACAAAGACTGACATT+TGG | + | chr2_4:5184931-5184950 | None:intergenic | 30.0% | |
| TCAATAGAATGCAATGGTAA+TGG | + | chr2_4:5185005-5185024 | None:intergenic | 30.0% | |
| ! | CAATTAGAGGTATGTGAAAA+TGG | + | chr2_4:5185125-5185144 | None:intergenic | 30.0% |
| TAATTCGGAATTGAGGAATA+GGG | + | chr2_4:5185165-5185184 | None:intergenic | 30.0% | |
| !! | GAGATTTTTGAGGAAAATAG+TGG | + | chr2_4:5185227-5185246 | None:intergenic | 30.0% |
| ! | TACCCAAATTGAGATTTTTG+AGG | + | chr2_4:5185237-5185256 | None:intergenic | 30.0% |
| ATAAACCAAGTATCAACACA+AGG | - | chr2_4:5185357-5185376 | Msa0310390:intron | 30.0% | |
| AACTGACAAACATGTGTATT+TGG | + | chr2_4:5185513-5185532 | None:intergenic | 30.0% | |
| TGCTAGCTCAAGATAAATAT+GGG | - | chr2_4:5186008-5186027 | Msa0310390:CDS | 30.0% | |
| TGTATTCAATGATGAGAATC+GGG | - | chr2_4:5186353-5186372 | Msa0310390:CDS | 30.0% | |
| ATGTTATTCAGAAAGCTCTT+CGG | - | chr2_4:5186445-5186464 | Msa0310390:CDS | 30.0% | |
| ! | ATGCATGTCTTAACATTTTG+AGG | - | chr2_4:5186529-5186548 | Msa0310390:CDS | 30.0% |
| ATGAACCAAATCTAGATAAG+AGG | + | chr2_4:5186578-5186597 | None:intergenic | 30.0% | |
| CAACCAATGAATTATACACA+TGG | + | chr2_4:5186744-5186763 | None:intergenic | 30.0% | |
| ATTTCGACAAATTGCTTTGT+AGG | + | chr2_4:5186779-5186798 | None:intergenic | 30.0% | |
| AGAAAATCTTCTTGGAATAC+GGG | + | chr2_4:5186804-5186823 | None:intergenic | 30.0% | |
| GAGAAAATCTTCTTGGAATA+CGG | + | chr2_4:5186805-5186824 | None:intergenic | 30.0% | |
| AACAAAATAGTACATTCGCA+TGG | + | chr2_4:5186940-5186959 | None:intergenic | 30.0% | |
| ! | AACACCATCATCTTTTATGG+AGG | - | chr2_4:5181035-5181054 | Msa0310390:CDS | 35.0% |
| AGATCCTCCATAAAAGATGA+TGG | + | chr2_4:5181042-5181061 | None:intergenic | 35.0% | |
| !! | AAGAGGTTTGTTGATCTATG+TGG | - | chr2_4:5181183-5181202 | Msa0310390:intron | 35.0% |
| ! | ATGCACATTGGTTGTAGTAA+TGG | - | chr2_4:5181219-5181238 | Msa0310390:intron | 35.0% |
| CACGAAGTAGCTAATTCATT+TGG | - | chr2_4:5181453-5181472 | Msa0310390:CDS | 35.0% | |
| CTAATTCATTTGGATCAGCA+GGG | - | chr2_4:5181463-5181482 | Msa0310390:CDS | 35.0% | |
| TCTCAATTGAATGACTTTGG+TGG | - | chr2_4:5181522-5181541 | Msa0310390:CDS | 35.0% | |
| ATCGTCTCTCTTCTATGATA+AGG | + | chr2_4:5181561-5181580 | None:intergenic | 35.0% | |
| AACAGCTGAATTTCTTCTCA+AGG | + | chr2_4:5181634-5181653 | None:intergenic | 35.0% | |
| CCTAGAATTACCATCATGAA+GGG | + | chr2_4:5181736-5181755 | None:intergenic | 35.0% | |
| TCCTAGAATTACCATCATGA+AGG | + | chr2_4:5181737-5181756 | None:intergenic | 35.0% | |
| CTATATCTACATGTCCTTGT+GGG | + | chr2_4:5181797-5181816 | None:intergenic | 35.0% | |
| TCTATATCTACATGTCCTTG+TGG | + | chr2_4:5181798-5181817 | None:intergenic | 35.0% | |
| AGAACTAGACATTCAACAAC+AGG | - | chr2_4:5181950-5181969 | Msa0310390:intron | 35.0% | |
| TGTGAAAATCCTAGACGTTA+TGG | - | chr2_4:5181984-5182003 | Msa0310390:intron | 35.0% | |
| GTGAAAATCCTAGACGTTAT+GGG | - | chr2_4:5181985-5182004 | Msa0310390:intron | 35.0% | |
| ! | TACTTAGGTTGCAAAGTGAA+TGG | + | chr2_4:5182020-5182039 | None:intergenic | 35.0% |
| ACCTAAGTATAATTCCCTGT+CGG | - | chr2_4:5182031-5182050 | Msa0310390:intron | 35.0% | |
| ! | TCGAGGGTGCATATATTTAA+TGG | - | chr2_4:5182058-5182077 | Msa0310390:intron | 35.0% |
| CTTCATCAAACATTCTTTGC+AGG | + | chr2_4:5182109-5182128 | None:intergenic | 35.0% | |
| CTGCAAAGAATGTTTGATGA+AGG | - | chr2_4:5182107-5182126 | Msa0310390:intron | 35.0% | |
| AATGTTTGATGAAGGCAGAA+TGG | - | chr2_4:5182115-5182134 | Msa0310390:intron | 35.0% | |
| ! | GAACTTATGATGAGTCCTTT+TGG | - | chr2_4:5182182-5182201 | Msa0310390:intron | 35.0% |
| GAATCTCGTTAAATACTCAC+GGG | - | chr2_4:5182300-5182319 | Msa0310390:intron | 35.0% | |
| ! | CCTTGTTATCTTCATTTCTC+AGG | + | chr2_4:5182590-5182609 | None:intergenic | 35.0% |
| CCTGAGAAATGAAGATAACA+AGG | - | chr2_4:5182587-5182606 | Msa0310390:intron | 35.0% | |
| ! | CGAGTCCACAATTTTTCATT+AGG | + | chr2_4:5182763-5182782 | None:intergenic | 35.0% |
| ! | AATTTTCTTACTCCCTCATG+CGG | - | chr2_4:5182960-5182979 | Msa0310390:intron | 35.0% |
| TCATACTTGTGTACTTGAGA+TGG | - | chr2_4:5183179-5183198 | Msa0310390:intron | 35.0% | |
| ! | ATATATACAGGAGGTGTATG+TGG | - | chr2_4:5183388-5183407 | Msa0310390:intron | 35.0% |
| TTGGGTCTAATCTTTAAGTC+TGG | + | chr2_4:5183435-5183454 | None:intergenic | 35.0% | |
| GGCATTATTCACTAGTTAGT+TGG | + | chr2_4:5183454-5183473 | None:intergenic | 35.0% | |
| ! | GATGGTCTTAAACATCTTAG+AGG | + | chr2_4:5183857-5183876 | None:intergenic | 35.0% |
| ! | TGTTTAAGACCATCTCCAAT+AGG | - | chr2_4:5183863-5183882 | Msa0310390:intron | 35.0% |
| AAAGTTTAAGTCCCTCCTAT+TGG | + | chr2_4:5183881-5183900 | None:intergenic | 35.0% | |
| TTGGGTACTTAATAGGTAAC+GGG | + | chr2_4:5183909-5183928 | None:intergenic | 35.0% | |
| TCCCTAATTGGGTACTTAAT+AGG | + | chr2_4:5183916-5183935 | None:intergenic | 35.0% | |
| CGAAAAAGTTTCTCCCTAAT+TGG | + | chr2_4:5183928-5183947 | None:intergenic | 35.0% | |
| !!! | ATTAGGGAGAAACTTTTTCG+GGG | - | chr2_4:5183928-5183947 | Msa0310390:intron | 35.0% |
| !!! | AAACTTTTTCGGGGTCTTAT+AGG | - | chr2_4:5183937-5183956 | Msa0310390:intron | 35.0% |
| ! | CAAAAGTAGTGGAAGAAAAG+TGG | + | chr2_4:5184030-5184049 | None:intergenic | 35.0% |
| !! | TACTGGTTTCACAAAAGTAG+TGG | + | chr2_4:5184041-5184060 | None:intergenic | 35.0% |
| ! | TTTCAGAAGAGTGGATTCAA+AGG | + | chr2_4:5184214-5184233 | None:intergenic | 35.0% |
| TATGTACACTTTCAGAAGAG+TGG | + | chr2_4:5184223-5184242 | None:intergenic | 35.0% | |
| !!! | TAGGCCTTTGTTTTTCTGTT+GGG | - | chr2_4:5184329-5184348 | Msa0310390:intron | 35.0% |
| AAGTTAAAAATAGTGAGGGG+TGG | + | chr2_4:5184594-5184613 | None:intergenic | 35.0% | |
| GAAATTCAAATGTAGCACCA+GGG | - | chr2_4:5184652-5184671 | Msa0310390:intron | 35.0% | |
| GCAATACAAAACTGTGGAAT+AGG | + | chr2_4:5184686-5184705 | None:intergenic | 35.0% | |
| !! | GCTATTTTGGGAAGCTTTTA+AGG | + | chr2_4:5184812-5184831 | None:intergenic | 35.0% |
| AAGCTTCCCAAAATAGCATT+TGG | - | chr2_4:5184815-5184834 | Msa0310390:intron | 35.0% | |
| !! | CATTTGGCTTCTTTTTAGTG+TGG | - | chr2_4:5184831-5184850 | Msa0310390:intron | 35.0% |
| AAATTTCCCGTTGTATGAAC+TGG | - | chr2_4:5184871-5184890 | Msa0310390:intron | 35.0% | |
| AACATAAGAAGGGCAATTAG+AGG | + | chr2_4:5185138-5185157 | None:intergenic | 35.0% | |
| ATAGGGTAGCAACATAAGAA+GGG | + | chr2_4:5185148-5185167 | None:intergenic | 35.0% | |
| AATAGGGTAGCAACATAAGA+AGG | + | chr2_4:5185149-5185168 | None:intergenic | 35.0% | |
| CTAATTCGGAATTGAGGAAT+AGG | + | chr2_4:5185166-5185185 | None:intergenic | 35.0% | |
| GGATTTCTAATTCGGAATTG+AGG | + | chr2_4:5185172-5185191 | None:intergenic | 35.0% | |
| ! | ATCTACCTTGTGTTGATACT+TGG | + | chr2_4:5185365-5185384 | None:intergenic | 35.0% |
| AAGTATCAACACAAGGTAGA+TGG | - | chr2_4:5185364-5185383 | Msa0310390:intron | 35.0% | |
| ATTATAGGGTAAAGGGCTTA+CGG | - | chr2_4:5185698-5185717 | Msa0310390:CDS | 35.0% | |
| ! | TTACGGGGTTTAGTTGATTT+AGG | - | chr2_4:5185715-5185734 | Msa0310390:CDS | 35.0% |
| ! | CTTGAATAGCGAATGCATTT+TGG | + | chr2_4:5185938-5185957 | None:intergenic | 35.0% |
| AAATGCATTCGCTATTCAAG+TGG | - | chr2_4:5185938-5185957 | Msa0310390:CDS | 35.0% | |
| AATGCATTCGCTATTCAAGT+GGG | - | chr2_4:5185939-5185958 | Msa0310390:CDS | 35.0% | |
| CTGCTAGCTCAAGATAAATA+TGG | - | chr2_4:5186007-5186026 | Msa0310390:CDS | 35.0% | |
| !! | GAATTGATTTGTTGGCTACA+AGG | + | chr2_4:5186172-5186191 | None:intergenic | 35.0% |
| !! | GTCGATGTGAATTGATTTGT+TGG | + | chr2_4:5186180-5186199 | None:intergenic | 35.0% |
| GGATTGATCATTGAACATTC+TGG | - | chr2_4:5186550-5186569 | Msa0310390:CDS | 35.0% | |
| TGGTTCCTCTTATCTAGATT+TGG | - | chr2_4:5186570-5186589 | Msa0310390:CDS | 35.0% | |
| TCCAAAATGATCAATGCCAA+GGG | + | chr2_4:5186860-5186879 | None:intergenic | 35.0% | |
| CAACAACATGAGATCATACA+AGG | + | chr2_4:5186964-5186983 | None:intergenic | 35.0% | |
| TCTTCATCAACTGTCACTAC+TGG | - | chr2_4:5180943-5180962 | Msa0310390:exon | 40.0% | |
| CTTAAATCCACCATGTCTTC+TGG | - | chr2_4:5181060-5181079 | Msa0310390:intron | 40.0% | |
| GCCCTAACAACAACATATTC+TGG | - | chr2_4:5181118-5181137 | Msa0310390:intron | 40.0% | |
| TCAGTGTTGTCCTTGAAATC+AGG | + | chr2_4:5181159-5181178 | None:intergenic | 40.0% | |
| TGATAGGGCTTCTCAACATA+GGG | + | chr2_4:5181392-5181411 | None:intergenic | 40.0% | |
| AATTAGCTACTTCGTGAGCT+CGG | + | chr2_4:5181449-5181468 | None:intergenic | 40.0% | |
| GCTAATTCATTTGGATCAGC+AGG | - | chr2_4:5181462-5181481 | Msa0310390:CDS | 40.0% | |
| ! | GAATGACTTTGGTGGTTCAA+TGG | - | chr2_4:5181530-5181549 | Msa0310390:CDS | 40.0% |
| AAGGATGGTGTAACAATCTC+AGG | + | chr2_4:5181615-5181634 | None:intergenic | 40.0% | |
| GCTGAATTTCTTCTCAAGGA+TGG | + | chr2_4:5181630-5181649 | None:intergenic | 40.0% | |
| CCCTTCATGATGGTAATTCT+AGG | - | chr2_4:5181733-5181752 | Msa0310390:intron | 40.0% | |
| TGTGGGATTCTAGCATTTGA+AGG | + | chr2_4:5181780-5181799 | None:intergenic | 40.0% | |
| TCAAATGCTAGAATCCCACA+AGG | - | chr2_4:5181780-5181799 | Msa0310390:CDS | 40.0% | |
| AGACATTCAACAACAGGTTG+TGG | - | chr2_4:5181956-5181975 | Msa0310390:intron | 40.0% | |
| GACATTCAACAACAGGTTGT+GGG | - | chr2_4:5181957-5181976 | Msa0310390:intron | 40.0% | |
| TCCGACAGGGAATTATACTT+AGG | + | chr2_4:5182035-5182054 | None:intergenic | 40.0% | |
| ATGGCCAAAGATCAAAATGG+TGG | - | chr2_4:5182077-5182096 | Msa0310390:intron | 40.0% | |
| TAACGAGATCATTGTTCACG+TGG | - | chr2_4:5182157-5182176 | Msa0310390:intron | 40.0% | |
| ATGTATGTAGTGAAGAGCAG+AGG | - | chr2_4:5182231-5182250 | Msa0310390:intron | 40.0% | |
| GAGGATGCAAATCATACTGA+TGG | - | chr2_4:5182250-5182269 | Msa0310390:intron | 40.0% | |
| AATCATACTGATGGCTATCC+AGG | - | chr2_4:5182259-5182278 | Msa0310390:intron | 40.0% | |
| TCATGTGGTTCAGCATTGTT+TGG | - | chr2_4:5182560-5182579 | Msa0310390:intron | 40.0% | |
| TTGCAACACCTCGTCTAAAT+TGG | - | chr2_4:5182682-5182701 | Msa0310390:intron | 40.0% | |
| AGGCTTAACCAATTTAGACG+AGG | + | chr2_4:5182693-5182712 | None:intergenic | 40.0% | |
| TAGTCAAACTATGACTGCAC+AGG | - | chr2_4:5182835-5182854 | Msa0310390:intron | 40.0% | |
| CGACAAAGCAAATCTGACAT+GGG | + | chr2_4:5183815-5183834 | None:intergenic | 40.0% | |
| ACGACAAAGCAAATCTGACA+TGG | + | chr2_4:5183816-5183835 | None:intergenic | 40.0% | |
| GTCGTAAGCACAAACTAACA+TGG | - | chr2_4:5183831-5183850 | Msa0310390:intron | 40.0% | |
| TTAAGACCATCTCCAATAGG+AGG | - | chr2_4:5183866-5183885 | Msa0310390:intron | 40.0% | |
| TAAGACCATCTCCAATAGGA+GGG | - | chr2_4:5183867-5183886 | Msa0310390:intron | 40.0% | |
| ! | AAGTAGTGGAAGAAAAGTGG+AGG | + | chr2_4:5184027-5184046 | None:intergenic | 40.0% |
| !!! | GTAGGCCTTTGTTTTTCTGT+TGG | - | chr2_4:5184328-5184347 | Msa0310390:intron | 40.0% |
| GGAAATTCAAATGTAGCACC+AGG | - | chr2_4:5184651-5184670 | Msa0310390:intron | 40.0% | |
| ACGGGAAATTTCTTCAGTCT+TGG | + | chr2_4:5184862-5184881 | None:intergenic | 40.0% | |
| AAGAGGTCCAGTTCATACAA+CGG | + | chr2_4:5184881-5184900 | None:intergenic | 40.0% | |
| TATGAACTGGACCTCTTCAT+TGG | - | chr2_4:5184884-5184903 | Msa0310390:intron | 40.0% | |
| !! | CCTAGGAGATCTTGTTTCTA+TGG | + | chr2_4:5185075-5185094 | None:intergenic | 40.0% |
| CCATAGAAACAAGATCTCCT+AGG | - | chr2_4:5185072-5185091 | Msa0310390:intron | 40.0% | |
| AACAGACTCCAAAAACTTGC+AGG | - | chr2_4:5185286-5185305 | Msa0310390:CDS | 40.0% | |
| ACAGACTCCAAAAACTTGCA+GGG | - | chr2_4:5185287-5185306 | Msa0310390:CDS | 40.0% | |
| GAAAATGGTCATGAACAGCT+TGG | - | chr2_4:5185433-5185452 | Msa0310390:intron | 40.0% | |
| TTATAGGGTAAAGGGCTTAC+GGG | - | chr2_4:5185699-5185718 | Msa0310390:CDS | 40.0% | |
| AACTGCACAATGCAAAGAAC+AGG | + | chr2_4:5185848-5185867 | None:intergenic | 40.0% | |
| GACATTGCAACTCATCAACA+TGG | - | chr2_4:5185899-5185918 | Msa0310390:CDS | 40.0% | |
| ATGCATTCGCTATTCAAGTG+GGG | - | chr2_4:5185940-5185959 | Msa0310390:CDS | 40.0% | |
| AAACTGCAGAGACAAAGTTG+TGG | + | chr2_4:5186268-5186287 | None:intergenic | 40.0% | |
| ACTTTGTCTCTGCAGTTTGA+AGG | - | chr2_4:5186270-5186289 | Msa0310390:CDS | 40.0% | |
| TCGTGTGGTTGAAAAATGTC+TGG | - | chr2_4:5186329-5186348 | Msa0310390:CDS | 40.0% | |
| TGAAGCAATAGGTCAAAGTG+AGG | + | chr2_4:5186408-5186427 | None:intergenic | 40.0% | |
| GGGCCATGTGTATAATTCAT+TGG | - | chr2_4:5186738-5186757 | Msa0310390:CDS | 40.0% | |
| CTTCTGCGAGAAAATCTTCT+TGG | + | chr2_4:5186812-5186831 | None:intergenic | 40.0% | |
| !!! | TCCCTTGGCATTGATCATTT+TGG | - | chr2_4:5186856-5186875 | Msa0310390:CDS | 40.0% |
| CTCCAAAATGATCAATGCCA+AGG | + | chr2_4:5186861-5186880 | None:intergenic | 40.0% | |
| AGCTGAAGTGTGTAGTGTTA+AGG | - | chr2_4:5187015-5187034 | Msa0310390:CDS | 40.0% | |
| ! | TGTGTGATGATGTTGCGTGA+GGG | + | chr2_4:5180807-5180826 | None:intergenic | 45.0% |
| ! | TTGTGTGATGATGTTGCGTG+AGG | + | chr2_4:5180808-5180827 | None:intergenic | 45.0% |
| TCAACTGTCACTACTGGAAG+TGG | - | chr2_4:5180949-5180968 | Msa0310390:CDS | 45.0% | |
| AGGACAACACTGAGTCTAAG+AGG | - | chr2_4:5181166-5181185 | Msa0310390:intron | 45.0% | |
| GATAGGGCTTCTCAACATAG+GGG | + | chr2_4:5181391-5181410 | None:intergenic | 45.0% | |
| CTGATAGGGCTTCTCAACAT+AGG | + | chr2_4:5181393-5181412 | None:intergenic | 45.0% | |
| AGAAGCCCTATCAGTCATCA+TGG | - | chr2_4:5181399-5181418 | Msa0310390:CDS | 45.0% | |
| CAGCTCCATGATGACTGATA+GGG | + | chr2_4:5181407-5181426 | None:intergenic | 45.0% | |
| TCAGCTCCATGATGACTGAT+AGG | + | chr2_4:5181408-5181427 | None:intergenic | 45.0% | |
| TCAGTCATCATGGAGCTGAA+AGG | - | chr2_4:5181409-5181428 | Msa0310390:CDS | 45.0% | |
| CCATCATGAAGGGAATCGAA+AGG | + | chr2_4:5181726-5181745 | None:intergenic | 45.0% | |
| CCTTTCGATTCCCTTCATGA+TGG | - | chr2_4:5181723-5181742 | Msa0310390:intron | 45.0% | |
| GGGATTCTAGCATTTGAAGG+TGG | + | chr2_4:5181777-5181796 | None:intergenic | 45.0% | |
| AGCTTCATCTTACAGGGTGA+AGG | - | chr2_4:5181837-5181856 | Msa0310390:CDS | 45.0% | |
| CAAGAGGTTCAGATCGATCA+AGG | - | chr2_4:5181877-5181896 | Msa0310390:CDS | 45.0% | |
| CAGAATGCTGCGCATGAATT+TGG | - | chr2_4:5181903-5181922 | Msa0310390:CDS | 45.0% | |
| !! | GCTTTGCTAAGCATCGACAT+AGG | - | chr2_4:5181925-5181944 | Msa0310390:CDS | 45.0% |
| AATCCTAGACGTTATGGGAC+TGG | - | chr2_4:5181990-5182009 | Msa0310390:intron | 45.0% | |
| !! | CCTGCCACCATTTTGATCTT+TGG | + | chr2_4:5182084-5182103 | None:intergenic | 45.0% |
| CCAAAGATCAAAATGGTGGC+AGG | - | chr2_4:5182081-5182100 | Msa0310390:intron | 45.0% | |
| !! | ACAACACGAGTGCTGATAGA+AGG | + | chr2_4:5182438-5182457 | None:intergenic | 45.0% |
| GTTGTATCAGCTCTTGAACC+AGG | - | chr2_4:5182504-5182523 | Msa0310390:intron | 45.0% | |
| TGACACTTTCTAAACGGGGA+GGG | + | chr2_4:5183052-5183071 | None:intergenic | 45.0% | |
| ATGACACTTTCTAAACGGGG+AGG | + | chr2_4:5183053-5183072 | None:intergenic | 45.0% | |
| ! | TATACAGGAGGTGTATGTGG+CGG | - | chr2_4:5183391-5183410 | Msa0310390:intron | 45.0% |
| TAAGTCCCTCCTATTGGAGA+TGG | + | chr2_4:5183875-5183894 | None:intergenic | 45.0% | |
| TGGAGGTAGCTACAATTCTC+AGG | + | chr2_4:5184010-5184029 | None:intergenic | 45.0% | |
| GGTACATGGTTCATGAGTAC+TGG | + | chr2_4:5184058-5184077 | None:intergenic | 45.0% | |
| !! | CTTCTAAGGTGCTTGGTACA+TGG | + | chr2_4:5184072-5184091 | None:intergenic | 45.0% |
| CATGTACCAAGCACCTTAGA+AGG | - | chr2_4:5184070-5184089 | Msa0310390:intron | 45.0% | |
| !! | GTACAACCTTCTAAGGTGCT+TGG | + | chr2_4:5184079-5184098 | None:intergenic | 45.0% |
| AACTGGGGTACAACCTTCTA+AGG | + | chr2_4:5184086-5184105 | None:intergenic | 45.0% | |
| TGGAATAGGGTTCTATACCC+TGG | + | chr2_4:5184672-5184691 | None:intergenic | 45.0% | |
| AGAGGTCCAGTTCATACAAC+GGG | + | chr2_4:5184880-5184899 | None:intergenic | 45.0% | |
| ACTCCAAAAACTTGCAGGGT+TGG | - | chr2_4:5185291-5185310 | Msa0310390:CDS | 45.0% | |
| ! | AGACCAACCCTGCAAGTTTT+TGG | + | chr2_4:5185297-5185316 | None:intergenic | 45.0% |
| !! | GCAGGGTTGGTCTTAACAAT+TGG | - | chr2_4:5185304-5185323 | Msa0310390:CDS | 45.0% |
| GTCCAACTATCCTATGTGCA+GGG | + | chr2_4:5185332-5185351 | None:intergenic | 45.0% | |
| AGTCCAACTATCCTATGTGC+AGG | + | chr2_4:5185333-5185352 | None:intergenic | 45.0% | |
| TATAGGGTAAAGGGCTTACG+GGG | - | chr2_4:5185700-5185719 | Msa0310390:CDS | 45.0% | |
| ! | TGGGGAGTATAGACGAAGAT+TGG | - | chr2_4:5185958-5185977 | Msa0310390:CDS | 45.0% |
| CATGCGGATCTTGAAGCAAT+AGG | + | chr2_4:5186419-5186438 | None:intergenic | 45.0% | |
| !! | TCCACCATGTCTTCTGGAAC+CGG | - | chr2_4:5181066-5181085 | Msa0310390:intron | 50.0% |
| !! | ATGTCTTCTGGAACCGGAAC+CGG | - | chr2_4:5181072-5181091 | Msa0310390:intron | 50.0% |
| TTTGAAGGTGGCACAGCTCT+AGG | + | chr2_4:5181765-5181784 | None:intergenic | 50.0% | |
| TGAGGGGAGCTTCATCTTAC+AGG | - | chr2_4:5181830-5181849 | Msa0310390:CDS | 50.0% | |
| GAGGGGAGCTTCATCTTACA+GGG | - | chr2_4:5181831-5181850 | Msa0310390:CDS | 50.0% | |
| GAACCAGTCCCATAACGTCT+AGG | + | chr2_4:5181996-5182015 | None:intergenic | 50.0% | |
| CGAGATCATTGTTCACGTGG+TGG | - | chr2_4:5182160-5182179 | Msa0310390:intron | 50.0% | |
| ! | GAGATTCTGACTAGCTGCTC+TGG | + | chr2_4:5182287-5182306 | None:intergenic | 50.0% |
| ACCACAACAGTACCGCATGA+GGG | + | chr2_4:5182975-5182994 | None:intergenic | 50.0% | |
| AACCACAACAGTACCGCATG+AGG | + | chr2_4:5182976-5182995 | None:intergenic | 50.0% | |
| CTGTTGTGGTTAGCACGACT+AGG | - | chr2_4:5182985-5183004 | Msa0310390:intron | 50.0% | |
| TGGGTTTGAACCCACACTCA+TGG | + | chr2_4:5183011-5183030 | None:intergenic | 50.0% | |
| ACACTTTCTAAACGGGGAGG+GGG | + | chr2_4:5183050-5183069 | None:intergenic | 50.0% | |
| GACACTTTCTAAACGGGGAG+GGG | + | chr2_4:5183051-5183070 | None:intergenic | 50.0% | |
| GGTAGCTACAATTCTCAGGC+TGG | + | chr2_4:5184006-5184025 | None:intergenic | 50.0% | |
| TGTCAGGGGACAAATGAACG+AGG | + | chr2_4:5184264-5184283 | None:intergenic | 50.0% | |
| CTGGACCTCTTCATTGGACT+AGG | - | chr2_4:5184890-5184909 | Msa0310390:intron | 50.0% | |
| GTGCTCCTAGTCCAATGAAG+AGG | + | chr2_4:5184898-5184917 | None:intergenic | 50.0% | |
| GTCAATGCAGCATTCAGCCT+AGG | + | chr2_4:5185092-5185111 | None:intergenic | 50.0% | |
| ACAATTGGAGCCCTGCACAT+AGG | - | chr2_4:5185319-5185338 | Msa0310390:CDS | 50.0% | |
| AGCCCTGCACATAGGATAGT+TGG | - | chr2_4:5185327-5185346 | Msa0310390:CDS | 50.0% | |
| GACAAAGTTGTGGCAGCAGA+TGG | + | chr2_4:5186258-5186277 | None:intergenic | 50.0% | |
| GCAGAAGTTCAGTAGTCGTG+TGG | - | chr2_4:5186314-5186333 | Msa0310390:CDS | 50.0% | |
| GAAAGCTCTTCGGCATTCTG+AGG | - | chr2_4:5186455-5186474 | Msa0310390:CDS | 50.0% | |
| TCCGGTTCCAGAAGACATGG+TGG | + | chr2_4:5181070-5181089 | None:intergenic | 55.0% | |
| GGTTCCGGTTCCAGAAGACA+TGG | + | chr2_4:5181073-5181092 | None:intergenic | 55.0% | |
| !! | TTCTGGAACCGGAACCGGAA+CGG | - | chr2_4:5181077-5181096 | Msa0310390:intron | 55.0% |
| ACCGGAACGGGAACATCGTA+TGG | - | chr2_4:5181090-5181109 | Msa0310390:intron | 55.0% | |
| GCCATACGATGTTCCCGTTC+CGG | + | chr2_4:5181094-5181113 | None:intergenic | 55.0% | |
| GATCAGCAGGGTCTGTTCCT+GGG | - | chr2_4:5181475-5181494 | Msa0310390:CDS | 55.0% | |
| AATTCCCTGTCGGAAGCTCG+AGG | - | chr2_4:5182041-5182060 | Msa0310390:intron | 55.0% | |
| ATTCCCTGTCGGAAGCTCGA+GGG | - | chr2_4:5182042-5182061 | Msa0310390:intron | 55.0% | |
| TCCCTCATGCGGTACTGTTG+TGG | - | chr2_4:5182971-5182990 | Msa0310390:intron | 55.0% | |
| CACGACTAGGCCATGAGTGT+GGG | - | chr2_4:5182998-5183017 | Msa0310390:intron | 55.0% | |
| TTTCTAAACGGGGAGGGGGA+GGG | + | chr2_4:5183046-5183065 | None:intergenic | 55.0% | |
| ! | TCTGGAACCGGAACCGGAAC+GGG | - | chr2_4:5181078-5181097 | Msa0310390:intron | 60.0% |
| CGATGTTCCCGTTCCGGTTC+CGG | + | chr2_4:5181088-5181107 | None:intergenic | 60.0% | |
| GGATCAGCAGGGTCTGTTCC+TGG | - | chr2_4:5181474-5181493 | Msa0310390:CDS | 60.0% | |
| ! | TGACTAGCTGCTCTGGCTCC+TGG | + | chr2_4:5182280-5182299 | None:intergenic | 60.0% |
| GCACGACTAGGCCATGAGTG+TGG | - | chr2_4:5182997-5183016 | Msa0310390:intron | 60.0% | |
| TTCTAAACGGGGAGGGGGAG+GGG | + | chr2_4:5183045-5183064 | None:intergenic | 60.0% | |
| CTTTCTAAACGGGGAGGGGG+AGG | + | chr2_4:5183047-5183066 | None:intergenic | 60.0% | |
| ATGTCTCGCACGCGCAACCC+AGG | + | chr2_4:5181495-5181514 | None:intergenic | 65.0% | |
| GCACCCTCGAGCTTCCGACA+GGG | + | chr2_4:5182048-5182067 | None:intergenic | 65.0% | |
| TGCACCCTCGAGCTTCCGAC+AGG | + | chr2_4:5182049-5182068 | None:intergenic | 65.0% | |
| !! | GGGAGGGGATGGGGTGTCGT+GGG | + | chr2_4:5183030-5183049 | None:intergenic | 70.0% |
| AACGGGGAGGGGGAGGGGAT+GGG | + | chr2_4:5183040-5183059 | None:intergenic | 70.0% | |
| AAACGGGGAGGGGGAGGGGA+TGG | + | chr2_4:5183041-5183060 | None:intergenic | 70.0% | |
| !! | GGGGAGGGGATGGGGTGTCG+TGG | + | chr2_4:5183031-5183050 | None:intergenic | 75.0% |
| ACGGGGAGGGGGAGGGGATG+GGG | + | chr2_4:5183039-5183058 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 5180736 | 5187058 | 5180736 | ID=Msa0310390;Name=Msa0310390 |
| chr2_4 | mRNA | 5180736 | 5187058 | 5180736 | ID=Msa0310390-mRNA-1;Parent=Msa0310390;Name=Msa0310390-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.75|0.6|1|1|1|5|212|771 |
| chr2_4 | exon | 5180736 | 5181055 | 5180736 | ID=Msa0310390-mRNA-1:exon:1769;Parent=Msa0310390-mRNA-1 |
| chr2_4 | exon | 5181318 | 5181576 | 5181318 | ID=Msa0310390-mRNA-1:exon:1768;Parent=Msa0310390-mRNA-1 |
| chr2_4 | exon | 5181765 | 5181964 | 5181765 | ID=Msa0310390-mRNA-1:exon:1767;Parent=Msa0310390-mRNA-1 |
| chr2_4 | exon | 5185186 | 5185348 | 5185186 | ID=Msa0310390-mRNA-1:exon:1766;Parent=Msa0310390-mRNA-1 |
| chr2_4 | exon | 5185473 | 5187058 | 5185473 | ID=Msa0310390-mRNA-1:exon:1765;Parent=Msa0310390-mRNA-1 |
| chr2_4 | CDS | 5185473 | 5187058 | 5185473 | ID=Msa0310390-mRNA-1:cds;Parent=Msa0310390-mRNA-1 |
| chr2_4 | CDS | 5185186 | 5185348 | 5185186 | ID=Msa0310390-mRNA-1:cds;Parent=Msa0310390-mRNA-1 |
| chr2_4 | CDS | 5181765 | 5181964 | 5181765 | ID=Msa0310390-mRNA-1:cds;Parent=Msa0310390-mRNA-1 |
| chr2_4 | CDS | 5181318 | 5181576 | 5181318 | ID=Msa0310390-mRNA-1:cds;Parent=Msa0310390-mRNA-1 |
| chr2_4 | CDS | 5180948 | 5181055 | 5180948 | ID=Msa0310390-mRNA-1:cds;Parent=Msa0310390-mRNA-1 |
| chr2_4 | three_prime_UTR | 5180736 | 5180947 | 5180736 | ID=Msa0310390-mRNA-1:three_prime_utr;Parent=Msa0310390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
