Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310740 | XP_013463315.1 | 91.250 | 80 | 7 | 0 | 2 | 81 | 20 | 99 | 6.64e-42 | 160 |
| Msa0310740 | XP_013463315.1 | 97.119 | 243 | 7 | 0 | 81 | 323 | 172 | 414 | 2.31e-167 | 482 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310740 | sp|Q9SY29|PUP4_ARATH | 63.525 | 244 | 73 | 2 | 80 | 307 | 127 | 370 | 1.41e-92 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0149560 | Msa0310740 | 0.801066 | 1.072752e-48 | -8.615850e-47 |
| Msa0310740 | Msa0619980 | 0.804979 | 1.665857e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310740 | MtrunA17_Chr2g0296491 | 90.123 | 243 | 7 | 1 | 81 | 323 | 172 | 397 | 3.49e-152 | 432 |
| Msa0310740 | MtrunA17_Chr2g0296491 | 91.250 | 80 | 7 | 0 | 2 | 81 | 20 | 99 | 4.20e-46 | 160 |
| Msa0310740 | MtrunA17_Chr2g0296481 | 87.342 | 237 | 29 | 1 | 81 | 317 | 153 | 388 | 3.16e-139 | 399 |
| Msa0310740 | MtrunA17_Chr3g0132551 | 34.237 | 295 | 179 | 5 | 23 | 312 | 75 | 359 | 1.36e-50 | 172 |
| Msa0310740 | MtrunA17_Chr5g0426921 | 38.819 | 237 | 132 | 5 | 81 | 313 | 130 | 357 | 3.45e-44 | 155 |
| Msa0310740 | MtrunA17_Chr7g0249781 | 35.897 | 234 | 143 | 3 | 81 | 308 | 131 | 363 | 2.38e-41 | 147 |
| Msa0310740 | MtrunA17_Chr2g0283381 | 32.743 | 226 | 146 | 3 | 81 | 303 | 147 | 369 | 8.83e-35 | 130 |
| Msa0310740 | MtrunA17_Chr4g0055041 | 33.191 | 235 | 146 | 5 | 81 | 311 | 144 | 371 | 1.40e-32 | 124 |
| Msa0310740 | MtrunA17_Chr3g0132561 | 32.328 | 232 | 118 | 4 | 81 | 312 | 132 | 324 | 7.69e-32 | 121 |
| Msa0310740 | MtrunA17_Chr3g0102091 | 34.498 | 229 | 141 | 5 | 82 | 306 | 155 | 378 | 6.11e-29 | 114 |
| Msa0310740 | MtrunA17_Chr8g0346091 | 29.108 | 213 | 147 | 2 | 80 | 289 | 150 | 361 | 2.14e-25 | 104 |
| Msa0310740 | MtrunA17_Chr6g0483671 | 31.765 | 170 | 107 | 5 | 146 | 311 | 5 | 169 | 7.93e-19 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310740 | AT1G30840.2 | 63.525 | 244 | 73 | 2 | 80 | 307 | 127 | 370 | 1.43e-93 | 283 |
| Msa0310740 | AT1G30840.1 | 63.525 | 244 | 73 | 2 | 80 | 307 | 127 | 370 | 1.43e-93 | 283 |
| Msa0310740 | AT1G28230.1 | 38.785 | 214 | 128 | 1 | 81 | 291 | 116 | 329 | 4.48e-44 | 154 |
| Msa0310740 | AT1G28220.1 | 35.268 | 224 | 140 | 3 | 81 | 301 | 110 | 331 | 1.74e-41 | 147 |
| Msa0310740 | AT2G33750.2 | 35.470 | 234 | 141 | 3 | 81 | 311 | 112 | 338 | 7.79e-41 | 146 |
| Msa0310740 | AT2G33750.1 | 33.878 | 245 | 141 | 4 | 81 | 311 | 112 | 349 | 1.11e-37 | 138 |
| Msa0310740 | AT1G44750.7 | 32.895 | 228 | 149 | 2 | 81 | 305 | 69 | 295 | 1.45e-36 | 133 |
| Msa0310740 | AT1G44750.5 | 32.895 | 228 | 149 | 2 | 81 | 305 | 69 | 295 | 1.45e-36 | 133 |
| Msa0310740 | AT1G44750.4 | 32.895 | 228 | 149 | 2 | 81 | 305 | 69 | 295 | 1.45e-36 | 133 |
| Msa0310740 | AT1G44750.8 | 32.895 | 228 | 149 | 2 | 81 | 305 | 69 | 295 | 1.45e-36 | 133 |
| Msa0310740 | AT1G44750.3 | 32.895 | 228 | 149 | 2 | 81 | 305 | 69 | 295 | 1.45e-36 | 133 |
| Msa0310740 | AT1G44750.6 | 32.895 | 228 | 149 | 2 | 81 | 305 | 133 | 359 | 1.03e-35 | 132 |
| Msa0310740 | AT1G44750.2 | 32.895 | 228 | 149 | 2 | 81 | 305 | 133 | 359 | 1.03e-35 | 132 |
| Msa0310740 | AT1G44750.1 | 33.333 | 231 | 148 | 3 | 81 | 308 | 145 | 372 | 1.23e-35 | 133 |
| Msa0310740 | AT4G18220.1 | 31.707 | 246 | 158 | 5 | 81 | 322 | 147 | 386 | 5.05e-30 | 118 |
| Msa0310740 | AT4G18190.1 | 31.356 | 236 | 152 | 4 | 81 | 307 | 140 | 374 | 2.06e-29 | 116 |
| Msa0310740 | AT4G08700.1 | 32.143 | 224 | 147 | 3 | 81 | 300 | 134 | 356 | 5.11e-29 | 114 |
| Msa0310740 | AT4G18210.1 | 32.340 | 235 | 149 | 6 | 81 | 311 | 147 | 375 | 1.53e-28 | 114 |
| Msa0310740 | AT5G41160.1 | 31.250 | 224 | 149 | 3 | 81 | 300 | 137 | 359 | 7.21e-26 | 106 |
| Msa0310740 | AT4G18205.1 | 29.412 | 221 | 149 | 3 | 81 | 298 | 144 | 360 | 1.34e-22 | 97.4 |
| Msa0310740 | AT4G18195.1 | 31.081 | 222 | 144 | 4 | 81 | 298 | 150 | 366 | 9.60e-21 | 92.4 |
| Msa0310740 | AT2G24220.2 | 27.225 | 191 | 135 | 2 | 97 | 284 | 170 | 359 | 2.71e-20 | 90.9 |
| Msa0310740 | AT2G24220.1 | 27.225 | 191 | 135 | 2 | 97 | 284 | 152 | 341 | 4.02e-20 | 90.1 |
| Msa0310740 | AT4G18197.1 | 28.054 | 221 | 152 | 3 | 81 | 298 | 147 | 363 | 2.62e-18 | 85.1 |
| Msa0310740 | AT1G57943.1 | 23.630 | 292 | 204 | 6 | 31 | 307 | 108 | 395 | 3.07e-13 | 70.5 |
| Msa0310740 | AT1G57943.2 | 23.630 | 292 | 204 | 6 | 31 | 307 | 107 | 394 | 3.38e-13 | 70.1 |
| Msa0310740 | AT1G57980.1 | 25.083 | 303 | 187 | 8 | 28 | 307 | 106 | 391 | 2.70e-11 | 64.3 |
Find 51 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGAGAAGGTTTATAAAA+AGG | 0.230155 | 2_4:-5538918 | Msa0310740:CDS |
| ATAAGGGAAGTAGAGTTTAT+TGG | 0.279865 | 2_4:-5538766 | Msa0310740:CDS |
| TTCTTGACATCTTCATTAAC+TGG | 0.298768 | 2_4:-5538680 | Msa0310740:CDS |
| TGCACTTTATTTAAGAGTTA+TGG | 0.307057 | 2_4:-5538936 | Msa0310740:CDS |
| AGTTTATTGGGTGACGGTTA+TGG | 0.334506 | 2_4:-5538753 | Msa0310740:CDS |
| TAAGGGAAGTAGAGTTTATT+GGG | 0.337303 | 2_4:-5538765 | Msa0310740:CDS |
| TGTTTCTTCTTGATGATCAA+TGG | 0.340461 | 2_4:+5542329 | None:intergenic |
| CCCATTTGCTTGAACCTTTG+TGG | 0.344896 | 2_4:+5542136 | None:intergenic |
| GTTATTGTTGGTAGGGTTCA+TGG | 0.363272 | 2_4:+5542371 | None:intergenic |
| AAAGGTTTATTGTTACGAAA+TGG | 0.386412 | 2_4:-5538900 | Msa0310740:CDS |
| GATGGAAATGCAGCTTATAA+TGG | 0.403898 | 2_4:-5538876 | Msa0310740:CDS |
| TTGAATCAACAAAGAGTAAG+AGG | 0.410604 | 2_4:+5542193 | None:intergenic |
| GTTGTTTATAGAGATGAATT+TGG | 0.416669 | 2_4:-5538608 | Msa0310740:CDS |
| GTTAAGATGTTGGAAGAGAA+AGG | 0.419906 | 2_4:-5538518 | Msa0310740:CDS |
| GTCAATTGTGTCGTTATTGT+TGG | 0.423259 | 2_4:+5542359 | None:intergenic |
| TTGTTGTCTATGAATGTGTT+GGG | 0.470612 | 2_4:-5538638 | Msa0310740:CDS |
| TTTGTTGTCTATGAATGTGT+TGG | 0.476057 | 2_4:-5538639 | Msa0310740:CDS |
| TTGTGTCGTTATTGTTGGTA+GGG | 0.478588 | 2_4:+5542364 | None:intergenic |
| TTGAGTGCTATGAGAAGGAG+TGG | 0.485825 | 2_4:-5538458 | Msa0310740:CDS |
| TTAAGATGTTGGAAGAGAAA+GGG | 0.486905 | 2_4:-5538517 | Msa0310740:CDS |
| ATTGTGTCGTTATTGTTGGT+AGG | 0.487863 | 2_4:+5542363 | None:intergenic |
| AAGGGAGGATGAAGAAGGAA+AGG | 0.491194 | 2_4:-5538499 | Msa0310740:CDS |
| TCTAGTAGTGAGAGACCAAA+AGG | 0.503256 | 2_4:-5539019 | Msa0310740:CDS |
| AGAGAAAGGGAGGATGAAGA+AGG | 0.505898 | 2_4:-5538504 | Msa0310740:CDS |
| GTGGGAATGGCGTGGGACGG+CGG | 0.511341 | 2_4:-5538827 | Msa0310740:CDS |
| AGCGACGGTGGGAATGGCGT+GGG | 0.523317 | 2_4:-5538834 | Msa0310740:CDS |
| TAGCGACGGTGGGAATGGCG+TGG | 0.526514 | 2_4:-5538835 | Msa0310740:CDS |
| AGAAATGAAGAGAGAAAGTG+AGG | 0.526851 | 2_4:-5538798 | Msa0310740:CDS |
| TGACATCTTCATTAACTGGT+GGG | 0.528350 | 2_4:-5538676 | Msa0310740:CDS |
| TTGACATCTTCATTAACTGG+TGG | 0.536861 | 2_4:-5538677 | Msa0310740:CDS |
| TTATTGTTACGAAATGGTGA+TGG | 0.537475 | 2_4:-5538894 | Msa0310740:CDS |
| AGAAGGAGTGGAGGTGCAGC+TGG | 0.540825 | 2_4:-5538446 | Msa0310740:CDS |
| TGGTATGTATGTTAAGATGT+TGG | 0.542161 | 2_4:-5538528 | Msa0310740:CDS |
| AAGTAGAGTTTATTGGGTGA+CGG | 0.542295 | 2_4:-5538759 | Msa0310740:CDS |
| AGATGTTGGAAGAGAAAGGG+AGG | 0.546729 | 2_4:-5538514 | Msa0310740:CDS |
| ACGGTGGGAATGGCGTGGGA+CGG | 0.554139 | 2_4:-5538830 | Msa0310740:CDS |
| GGAAAGGAATGATTCTTCCA+TGG | 0.564361 | 2_4:-5538483 | Msa0310740:CDS |
| TCTCATAGCACTCAACTCCA+TGG | 0.565621 | 2_4:+5538466 | None:intergenic |
| TATAATGGAGATCGCAGCGA+CGG | 0.573766 | 2_4:-5538861 | Msa0310740:CDS |
| AGGTAGTTGATTATCAAAAG+AGG | 0.585417 | 2_4:+5542213 | None:intergenic |
| AAATAACAACCCTGCACCAA+GGG | 0.586933 | 2_4:+5538958 | None:intergenic |
| GTTTATAGAGATGAATTTGG+TGG | 0.600174 | 2_4:-5538605 | Msa0310740:CDS |
| TTGTTGTTAACAAATGGTGA+TGG | 0.602107 | 2_4:+5542288 | None:intergenic |
| TTATTTAAGAGTTATGGAGA+AGG | 0.609126 | 2_4:-5538930 | Msa0310740:CDS |
| TTGTCTATGAATGTGTTGGG+TGG | 0.612302 | 2_4:-5538635 | Msa0310740:CDS |
| AAATACTATTTCATCCACAA+AGG | 0.615305 | 2_4:-5542150 | Msa0310740:intron |
| TGGAGTTGAGTGCTATGAGA+AGG | 0.615540 | 2_4:-5538463 | Msa0310740:CDS |
| AATGAAGAGAGAAAGTGAGG+AGG | 0.621575 | 2_4:-5538795 | Msa0310740:CDS |
| CAAATAACAACCCTGCACCA+AGG | 0.641471 | 2_4:+5538957 | None:intergenic |
| TTATGGCGAATGTCGTGACG+TGG | 0.680193 | 2_4:-5538736 | Msa0310740:CDS |
| AGTGCTATGAGAAGGAGTGG+AGG | 0.742926 | 2_4:-5538455 | Msa0310740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAACTATATATACTAATA+GGG | + | chr2_4:5538840-5538859 | None:intergenic | 15.0% |
| !! | TTACAACTATATATACTAAT+AGG | + | chr2_4:5538841-5538860 | None:intergenic | 15.0% |
| !! | TACAACTATATATACTAATA+GGG | + | chr2_4:5538840-5538859 | None:intergenic | 15.0% |
| !! | TTACAACTATATATACTAAT+AGG | + | chr2_4:5538841-5538860 | None:intergenic | 15.0% |
| !!! | ATTGATAAAGTTAACATTTT+AGG | + | chr2_4:5541564-5541583 | None:intergenic | 15.0% |
| !!! | TTAACTTTATCAATTTTTGT+TGG | - | chr2_4:5541570-5541589 | Msa0310740:intron | 15.0% |
| !! | CTAATATGAAATCAATGAAA+GGG | + | chr2_4:5538786-5538805 | None:intergenic | 20.0% |
| !! | TCTAATATGAAATCAATGAA+AGG | + | chr2_4:5538787-5538806 | None:intergenic | 20.0% |
| !! | TATGAAATTCTTTCTATTGA+TGG | + | chr2_4:5538910-5538929 | None:intergenic | 20.0% |
| !! | AAAAAGATGTGAGAAAATTA+TGG | + | chr2_4:5539038-5539057 | None:intergenic | 20.0% |
| !!! | GTTAAAATCTTTTGATTGAT+AGG | - | chr2_4:5540265-5540284 | Msa0310740:intron | 20.0% |
| !!! | TCTTTTGGATTATCATATAT+TGG | - | chr2_4:5540614-5540633 | Msa0310740:intron | 20.0% |
| !! | TATGAAATTCTTTCTATTGA+TGG | + | chr2_4:5538910-5538929 | None:intergenic | 20.0% |
| !! | ACGAAAAAAGAATACTTTAT+TGG | - | chr2_4:5541819-5541838 | Msa0310740:intron | 20.0% |
| !!! | TGAGTTTTGTTGTTAACAAA+TGG | + | chr2_4:5538532-5538551 | None:intergenic | 25.0% |
| ! | AAATACTATTTCATCCACAA+AGG | - | chr2_4:5538661-5538680 | Msa0310740:CDS | 25.0% |
| ! | AAATTGGGATGATTAAAAGA+GGG | + | chr2_4:5538729-5538748 | None:intergenic | 25.0% |
| ! | AAAATTGGGATGATTAAAAG+AGG | + | chr2_4:5538730-5538749 | None:intergenic | 25.0% |
| ! | AGAAAAATGGAAATTGAATC+AGG | + | chr2_4:5539176-5539195 | None:intergenic | 25.0% |
| !! | ATAATTTTCCCCAATTCTTA+GGG | - | chr2_4:5539266-5539285 | Msa0310740:intron | 25.0% |
| ! | GTTTATTGCATTAACATCAT+TGG | - | chr2_4:5539312-5539331 | Msa0310740:intron | 25.0% |
| ! | TCAGATCATATTCACAATTA+CGG | + | chr2_4:5539526-5539545 | None:intergenic | 25.0% |
| ! | AGTTATAGATTGCAATAACT+GGG | + | chr2_4:5539645-5539664 | None:intergenic | 25.0% |
| ! | TAGTTATAGATTGCAATAAC+TGG | + | chr2_4:5539646-5539665 | None:intergenic | 25.0% |
| !! | ATACTTCTTTGTTTCTTCTA+TGG | - | chr2_4:5540034-5540053 | Msa0310740:intron | 25.0% |
| ! | AAAGCTAAAATGAGCATAAA+AGG | + | chr2_4:5540206-5540225 | None:intergenic | 25.0% |
| ! | TTATGTTGCAATGATTCTTT+GGG | - | chr2_4:5540456-5540475 | Msa0310740:intron | 25.0% |
| ! | TCAACAAAATGAGGTAATAT+TGG | + | chr2_4:5540538-5540557 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTAGCTTCATTCT+TGG | - | chr2_4:5540721-5540740 | Msa0310740:intron | 25.0% |
| ! | AATATCAACAAAGCCAATTA+AGG | + | chr2_4:5541133-5541152 | None:intergenic | 25.0% |
| !!! | TTAATTGGCTTTGTTGATAT+TGG | - | chr2_4:5541132-5541151 | Msa0310740:intron | 25.0% |
| ! | ATCAAGCAAATGAAAATACA+AGG | + | chr2_4:5541296-5541315 | None:intergenic | 25.0% |
| ! | ACTTGAAATGAGAAAATACA+AGG | + | chr2_4:5541325-5541344 | None:intergenic | 25.0% |
| !!! | TGTATTTTCTCATTTCAAGT+TGG | - | chr2_4:5541325-5541344 | Msa0310740:intron | 25.0% |
| !! | ATTTTTGTTGGTATCATGTT+AGG | - | chr2_4:5541582-5541601 | Msa0310740:intron | 25.0% |
| !! | TTTTTGTTGGTATCATGTTA+GGG | - | chr2_4:5541583-5541602 | Msa0310740:intron | 25.0% |
| !! | TTAACAATCTTTTAACCTCA+TGG | - | chr2_4:5541607-5541626 | Msa0310740:intron | 25.0% |
| !! | TAACAATCTTTTAACCTCAT+GGG | - | chr2_4:5541608-5541627 | Msa0310740:intron | 25.0% |
| !!! | GATTTTTTGTTTCACTATGA+TGG | + | chr2_4:5541709-5541728 | None:intergenic | 25.0% |
| !! | TGCACTTTATTTAAGAGTTA+TGG | - | chr2_4:5541875-5541894 | Msa0310740:intron | 25.0% |
| ! | TTATTTAAGAGTTATGGAGA+AGG | - | chr2_4:5541881-5541900 | Msa0310740:intron | 25.0% |
| ! | TATGGAGAAGGTTTATAAAA+AGG | - | chr2_4:5541893-5541912 | Msa0310740:intron | 25.0% |
| ! | AAAGGTTTATTGTTACGAAA+TGG | - | chr2_4:5541911-5541930 | Msa0310740:intron | 25.0% |
| ! | GTTGTTTATAGAGATGAATT+TGG | - | chr2_4:5542203-5542222 | Msa0310740:CDS | 25.0% |
| !! | GGATTTTGTTCTTATGTTTA+TGG | - | chr2_4:5542263-5542282 | Msa0310740:CDS | 25.0% |
| ! | TGTTTCTTCTTGATGATCAA+TGG | + | chr2_4:5538485-5538504 | None:intergenic | 30.0% |
| ! | TTGTTGTTAACAAATGGTGA+TGG | + | chr2_4:5538526-5538545 | None:intergenic | 30.0% |
| AGGTAGTTGATTATCAAAAG+AGG | + | chr2_4:5538601-5538620 | None:intergenic | 30.0% | |
| TTGAATCAACAAAGAGTAAG+AGG | + | chr2_4:5538621-5538640 | None:intergenic | 30.0% | |
| ! | ATCAATGAAAGGGTTTCTTT+TGG | + | chr2_4:5538776-5538795 | None:intergenic | 30.0% |
| TGATACCATGTTATGAAACA+TGG | + | chr2_4:5538960-5538979 | None:intergenic | 30.0% | |
| ATCAGGAAATAGAAGAAGAA+AGG | + | chr2_4:5539159-5539178 | None:intergenic | 30.0% | |
| ! | CATAATTTTCCCCAATTCTT+AGG | - | chr2_4:5539265-5539284 | Msa0310740:intron | 30.0% |
| AATCACAAACCCTAAGAATT+GGG | + | chr2_4:5539278-5539297 | None:intergenic | 30.0% | |
| !! | TTTGGATATTGACTTTGAGA+TGG | - | chr2_4:5539708-5539727 | Msa0310740:intron | 30.0% |
| GCAAACAAACTATAAGTGAA+AGG | + | chr2_4:5539943-5539962 | None:intergenic | 30.0% | |
| TGTTTGTCATACATTCTCTT+TGG | - | chr2_4:5539994-5540013 | Msa0310740:intron | 30.0% | |
| TTATAGATATTGCATACTGC+TGG | - | chr2_4:5540080-5540099 | Msa0310740:intron | 30.0% | |
| TATAGATATTGCATACTGCT+GGG | - | chr2_4:5540081-5540100 | Msa0310740:intron | 30.0% | |
| TTCTTTGCTTATCATGATGT+TGG | - | chr2_4:5540110-5540129 | Msa0310740:intron | 30.0% | |
| !!! | CATTTTAGCTTTCATAGTTG+TGG | - | chr2_4:5540214-5540233 | Msa0310740:intron | 30.0% |
| !!! | ATCGTTGATGTAGTTTGTTT+TGG | - | chr2_4:5540305-5540324 | Msa0310740:intron | 30.0% |
| !!! | TCGTTGATGTAGTTTGTTTT+GGG | - | chr2_4:5540306-5540325 | Msa0310740:intron | 30.0% |
| GTTATGTTGCAATGATTCTT+TGG | - | chr2_4:5540455-5540474 | Msa0310740:intron | 30.0% | |
| ACATTCACATCAACAAAATG+AGG | + | chr2_4:5540547-5540566 | None:intergenic | 30.0% | |
| ! | TCATTTTGTTGATGTGAATG+TGG | - | chr2_4:5540546-5540565 | Msa0310740:intron | 30.0% |
| !! | AGGATCAGATTTGTTTCTTT+TGG | - | chr2_4:5540599-5540618 | Msa0310740:intron | 30.0% |
| CAATTCATAAGCATCACATT+TGG | - | chr2_4:5540645-5540664 | Msa0310740:intron | 30.0% | |
| !! | CAACATGGATTTGTTTTCTA+TGG | - | chr2_4:5540777-5540796 | Msa0310740:intron | 30.0% |
| GTGTGAAATGTTATGAAACA+TGG | + | chr2_4:5541542-5541561 | None:intergenic | 30.0% | |
| ! | AACAATCTTTTAACCTCATG+GGG | - | chr2_4:5541609-5541628 | Msa0310740:intron | 30.0% |
| !!! | TCTTTTTTCGTTAGTCCTTT+TGG | + | chr2_4:5541810-5541829 | None:intergenic | 30.0% |
| TTATTGTTACGAAATGGTGA+TGG | - | chr2_4:5541917-5541936 | Msa0310740:intron | 30.0% | |
| ATAAGGGAAGTAGAGTTTAT+TGG | - | chr2_4:5542045-5542064 | Msa0310740:intron | 30.0% | |
| TAAGGGAAGTAGAGTTTATT+GGG | - | chr2_4:5542046-5542065 | Msa0310740:intron | 30.0% | |
| TTCTTGACATCTTCATTAAC+TGG | - | chr2_4:5542131-5542150 | Msa0310740:intron | 30.0% | |
| ! | TTTGTTGTCTATGAATGTGT+TGG | - | chr2_4:5542172-5542191 | Msa0310740:CDS | 30.0% |
| TTGTTGTCTATGAATGTGTT+GGG | - | chr2_4:5542173-5542192 | Msa0310740:CDS | 30.0% | |
| GTTTATAGAGATGAATTTGG+TGG | - | chr2_4:5542206-5542225 | Msa0310740:CDS | 30.0% | |
| ! | TTTCAACTGTTTTGTGTATG+TGG | - | chr2_4:5542240-5542259 | Msa0310740:CDS | 30.0% |
| ! | TTCAACTGTTTTGTGTATGT+GGG | - | chr2_4:5542241-5542260 | Msa0310740:CDS | 30.0% |
| TGGTATGTATGTTAAGATGT+TGG | - | chr2_4:5542283-5542302 | Msa0310740:CDS | 30.0% | |
| TTAAGATGTTGGAAGAGAAA+GGG | - | chr2_4:5542294-5542313 | Msa0310740:CDS | 30.0% | |
| ! | TTGTGTCGTTATTGTTGGTA+GGG | + | chr2_4:5538450-5538469 | None:intergenic | 35.0% |
| ! | ATTGTGTCGTTATTGTTGGT+AGG | + | chr2_4:5538451-5538470 | None:intergenic | 35.0% |
| ! | GTCAATTGTGTCGTTATTGT+TGG | + | chr2_4:5538455-5538474 | None:intergenic | 35.0% |
| !! | AGTTTTGATCATTTGCATGC+AGG | + | chr2_4:5538555-5538574 | None:intergenic | 35.0% |
| !! | AAGAGGCATGTACTTTTTGT+TGG | + | chr2_4:5538584-5538603 | None:intergenic | 35.0% |
| GGAGATAAGGGAGAAAAATT+GGG | + | chr2_4:5538744-5538763 | None:intergenic | 35.0% | |
| AGGAGATAAGGGAGAAAAAT+TGG | + | chr2_4:5538745-5538764 | None:intergenic | 35.0% | |
| AGAAAGTTAACCCACTTATG+GGG | + | chr2_4:5538867-5538886 | None:intergenic | 35.0% | |
| GAGAAAGTTAACCCACTTAT+GGG | + | chr2_4:5538868-5538887 | None:intergenic | 35.0% | |
| TGAGAAAGTTAACCCACTTA+TGG | + | chr2_4:5538869-5538888 | None:intergenic | 35.0% | |
| ATAGTGAAAACTGACGAGAA+AGG | + | chr2_4:5539080-5539099 | None:intergenic | 35.0% | |
| ACGCAATTGAACGAGAAAAA+TGG | + | chr2_4:5539189-5539208 | None:intergenic | 35.0% | |
| ATCACAAACCCTAAGAATTG+GGG | + | chr2_4:5539277-5539296 | None:intergenic | 35.0% | |
| GAATCACAAACCCTAAGAAT+TGG | + | chr2_4:5539279-5539298 | None:intergenic | 35.0% | |
| ! | GATGTTCTTGATCGATTTCT+TGG | - | chr2_4:5539488-5539507 | Msa0310740:intron | 35.0% |
| AAAAGCGGTATGATTGAGTT+TGG | - | chr2_4:5539683-5539702 | Msa0310740:intron | 35.0% | |
| ! | GTATGATTGAGTTTGGTCTT+TGG | - | chr2_4:5539690-5539709 | Msa0310740:intron | 35.0% |
| TGGATCAGAACAAATTGTAG+TGG | + | chr2_4:5539807-5539826 | None:intergenic | 35.0% | |
| TTCTGATCCAACATTGCATT+GGG | - | chr2_4:5539817-5539836 | Msa0310740:intron | 35.0% | |
| ATTGCATTGGACTTTCTTTG+AGG | - | chr2_4:5539840-5539859 | Msa0310740:intron | 35.0% | |
| TGATGTTCCTGTGTTATGTA+AGG | - | chr2_4:5539912-5539931 | Msa0310740:intron | 35.0% | |
| ! | AGTTTGTTTGCTGCATTCTT+TGG | - | chr2_4:5539952-5539971 | Msa0310740:intron | 35.0% |
| ! | GTTTGTTTGCTGCATTCTTT+GGG | - | chr2_4:5539953-5539972 | Msa0310740:intron | 35.0% |
| !! | ACATTCTCTTTGGAACACAT+TGG | - | chr2_4:5540004-5540023 | Msa0310740:intron | 35.0% |
| !! | TATGGTGTTGTTATCACACT+TGG | - | chr2_4:5540052-5540071 | Msa0310740:intron | 35.0% |
| TCATGATGTTGGATCTGATA+TGG | - | chr2_4:5540121-5540140 | Msa0310740:intron | 35.0% | |
| !! | TGTGCCTTTAGTTTGGTATT+TGG | - | chr2_4:5540341-5540360 | Msa0310740:intron | 35.0% |
| CTCACCAAATACCAAACTAA+AGG | + | chr2_4:5540348-5540367 | None:intergenic | 35.0% | |
| !! | CTTTAGTTTGGTATTTGGTG+AGG | - | chr2_4:5540346-5540365 | Msa0310740:intron | 35.0% |
| CATCTATTGTTGGACAATGT+TGG | - | chr2_4:5540372-5540391 | Msa0310740:intron | 35.0% | |
| CTCATCATAGTAGCTTGATT+TGG | - | chr2_4:5540489-5540508 | Msa0310740:intron | 35.0% | |
| ! | GGATTATCATATATTGGCCT+TGG | - | chr2_4:5540620-5540639 | Msa0310740:intron | 35.0% |
| GATGCTTATGAATTGTTCCA+AGG | + | chr2_4:5540640-5540659 | None:intergenic | 35.0% | |
| !! | AGCTCAACACTCTTTTAGTT+TGG | - | chr2_4:5540669-5540688 | Msa0310740:intron | 35.0% |
| !!! | ACACTCTTTTAGTTTGGAAG+TGG | - | chr2_4:5540675-5540694 | Msa0310740:intron | 35.0% |
| !!! | GTTTGCTGTCAAGAACTTTT+GGG | - | chr2_4:5540697-5540716 | Msa0310740:intron | 35.0% |
| !!! | ATTCTTGGAAGCATTGGTTT+TGG | - | chr2_4:5540736-5540755 | Msa0310740:intron | 35.0% |
| TGTTGATGCATTCAAACCAT+AGG | + | chr2_4:5540762-5540781 | None:intergenic | 35.0% | |
| ATGGTTTGAATGCATCAACA+TGG | - | chr2_4:5540762-5540781 | Msa0310740:intron | 35.0% | |
| ACATGGCTATGAATCTCTAT+TGG | - | chr2_4:5540814-5540833 | Msa0310740:intron | 35.0% | |
| !! | AATCTCTATTGGCTTGCATT+TGG | - | chr2_4:5540825-5540844 | Msa0310740:intron | 35.0% |
| !!! | AAGGGCATCACTTTTATCTT+TGG | - | chr2_4:5540873-5540892 | Msa0310740:intron | 35.0% |
| !!! | CACTTTTATCTTTGGAACCT+TGG | - | chr2_4:5540881-5540900 | Msa0310740:intron | 35.0% |
| TTGAACAAACTTCACACCAA+AGG | + | chr2_4:5540925-5540944 | None:intergenic | 35.0% | |
| ! | AAGAAAAGAAGTGCAAGGAA+GGG | + | chr2_4:5540978-5540997 | None:intergenic | 35.0% |
| ! | AAGACAAGAAAAGAAGTGCA+AGG | + | chr2_4:5540983-5541002 | None:intergenic | 35.0% |
| !! | TTGTTGATATTGGCTTCTAC+CGG | - | chr2_4:5541142-5541161 | Msa0310740:intron | 35.0% |
| CTCAAGGTTGAACTAATTGA+AGG | + | chr2_4:5541199-5541218 | None:intergenic | 35.0% | |
| ! | ATTAGTTCAACCTTGAGTTG+TGG | - | chr2_4:5541202-5541221 | Msa0310740:intron | 35.0% |
| ! | AAGCACTTGTTTGATGACTT+TGG | - | chr2_4:5541241-5541260 | Msa0310740:intron | 35.0% |
| GAAAATACAAGGAAAGATGC+CGG | + | chr2_4:5541285-5541304 | None:intergenic | 35.0% | |
| AGAAAGTTAACCCACTTATG+GGG | + | chr2_4:5538867-5538886 | None:intergenic | 35.0% | |
| GAGAAAGTTAACCCACTTAT+GGG | + | chr2_4:5538868-5538887 | None:intergenic | 35.0% | |
| TGAGAAAGTTAACCCACTTA+TGG | + | chr2_4:5538869-5538888 | None:intergenic | 35.0% | |
| !! | AAAAGTGCTGAAGTTGAAAC+AGG | + | chr2_4:5541648-5541667 | None:intergenic | 35.0% |
| GATGGAAATGCAGCTTATAA+TGG | - | chr2_4:5541935-5541954 | Msa0310740:intron | 35.0% | |
| AGAAATGAAGAGAGAAAGTG+AGG | - | chr2_4:5542013-5542032 | Msa0310740:intron | 35.0% | |
| ! | AAGTGAGGAGGTTTTTGATA+AGG | - | chr2_4:5542028-5542047 | Msa0310740:intron | 35.0% |
| ! | AGTGAGGAGGTTTTTGATAA+GGG | - | chr2_4:5542029-5542048 | Msa0310740:intron | 35.0% |
| AAGTAGAGTTTATTGGGTGA+CGG | - | chr2_4:5542052-5542071 | Msa0310740:intron | 35.0% | |
| !!! | ACGTGGCAGTTTTGTTTTAT+GGG | - | chr2_4:5542092-5542111 | Msa0310740:intron | 35.0% |
| !!! | TTTTGTTTTATGGGAACTGC+TGG | - | chr2_4:5542101-5542120 | Msa0310740:intron | 35.0% |
| TTGACATCTTCATTAACTGG+TGG | - | chr2_4:5542134-5542153 | Msa0310740:intron | 35.0% | |
| TGACATCTTCATTAACTGGT+GGG | - | chr2_4:5542135-5542154 | Msa0310740:intron | 35.0% | |
| ! | TCAACTGTTTTGTGTATGTG+GGG | - | chr2_4:5542242-5542261 | Msa0310740:CDS | 35.0% |
| GTTAAGATGTTGGAAGAGAA+AGG | - | chr2_4:5542293-5542312 | Msa0310740:CDS | 35.0% | |
| TCCACAAAGGTTCAAGCAAA+TGG | - | chr2_4:5538674-5538693 | Msa0310740:CDS | 40.0% | |
| CCACAAAGGTTCAAGCAAAT+GGG | - | chr2_4:5538675-5538694 | Msa0310740:CDS | 40.0% | |
| AAGCAAATGGGTCTCTACTT+GGG | - | chr2_4:5538687-5538706 | Msa0310740:CDS | 40.0% | |
| TGGTGAGATTGAGGAGATAA+GGG | + | chr2_4:5538756-5538775 | None:intergenic | 40.0% | |
| TTGGTGAGATTGAGGAGATA+AGG | + | chr2_4:5538757-5538776 | None:intergenic | 40.0% | |
| ! | GGTTTCTTTTGGTGAGATTG+AGG | + | chr2_4:5538765-5538784 | None:intergenic | 40.0% |
| ! | GCTTTTCTCTCCTTCATCAA+TGG | - | chr2_4:5538931-5538950 | Msa0310740:CDS | 40.0% |
| AACATGGCATCCATTGATGA+AGG | + | chr2_4:5538944-5538963 | None:intergenic | 40.0% | |
| GGATGCCATGTTTCATAACA+TGG | - | chr2_4:5538952-5538971 | Msa0310740:CDS | 40.0% | |
| ACATGGTATCAGAGCTAATC+TGG | - | chr2_4:5538969-5538988 | Msa0310740:CDS | 40.0% | |
| TAATCTGGTATCCTCCTTGA+AGG | - | chr2_4:5538984-5539003 | Msa0310740:CDS | 40.0% | |
| ! | ATTTTCTCGAGAAAACGCAG+CGG | + | chr2_4:5539015-5539034 | None:intergenic | 40.0% |
| AATTACGAACAGAATCGCGA+AGG | + | chr2_4:5539228-5539247 | None:intergenic | 40.0% | |
| TCGCGATTCTGTTCGTAATT+CGG | - | chr2_4:5539228-5539247 | Msa0310740:intron | 40.0% | |
| CGTCAATTGTGAAATCGAAG+CGG | + | chr2_4:5539357-5539376 | None:intergenic | 40.0% | |
| CGCTTCGATTTCACAATTGA+CGG | - | chr2_4:5539355-5539374 | Msa0310740:intron | 40.0% | |
| GTGCTATGTTCGTTGAAAAG+CGG | - | chr2_4:5539668-5539687 | Msa0310740:intron | 40.0% | |
| !! | AGATGGTTCTAACTGTGCAT+TGG | - | chr2_4:5539725-5539744 | Msa0310740:intron | 40.0% |
| !! | CTGTGCATTGGTTGTGAATT+TGG | - | chr2_4:5539737-5539756 | Msa0310740:intron | 40.0% |
| TTCTGCAGTTATGCTACTGT+TGG | - | chr2_4:5539779-5539798 | Msa0310740:intron | 40.0% | |
| GTTCTGATCCAACATTGCAT+TGG | - | chr2_4:5539816-5539835 | Msa0310740:intron | 40.0% | |
| ATGCAATCCCAATGCAATGT+TGG | + | chr2_4:5539827-5539846 | None:intergenic | 40.0% | |
| ACATTGCATTGGGATTGCAT+TGG | - | chr2_4:5539827-5539846 | Msa0310740:intron | 40.0% | |
| GGAATGTCCTTACATAACAC+AGG | + | chr2_4:5539922-5539941 | None:intergenic | 40.0% | |
| ACAAACAACCAAGCTGCAAT+TGG | + | chr2_4:5539981-5540000 | None:intergenic | 40.0% | |
| TGAGCATAAAAGGAACTACG+AGG | + | chr2_4:5540196-5540215 | None:intergenic | 40.0% | |
| AACGATCCAGGAGCAAATAA+AGG | + | chr2_4:5540291-5540310 | None:intergenic | 40.0% | |
| ACAAACTACATCAACGATCC+AGG | + | chr2_4:5540303-5540322 | None:intergenic | 40.0% | |
| CTACTCTTGTGCCTTTAGTT+TGG | - | chr2_4:5540334-5540353 | Msa0310740:intron | 40.0% | |
| GGTGAGGTTTCATCTATTGT+TGG | - | chr2_4:5540362-5540381 | Msa0310740:intron | 40.0% | |
| CTGAACTAGAGAGAAACAGA+AGG | + | chr2_4:5540436-5540455 | None:intergenic | 40.0% | |
| !! | CTTGATTTGGCAACATGACA+TGG | - | chr2_4:5540502-5540521 | Msa0310740:intron | 40.0% |
| !! | TGTGGAACTTTGAAGCCTAA+AGG | - | chr2_4:5540564-5540583 | Msa0310740:intron | 40.0% |
| CCTTGTGTAAAGACACCTTT+AGG | + | chr2_4:5540582-5540601 | None:intergenic | 40.0% | |
| !! | CCTAAAGGTGTCTTTACACA+AGG | - | chr2_4:5540579-5540598 | Msa0310740:intron | 40.0% |
| !!! | GGTTTGCTGTCAAGAACTTT+TGG | - | chr2_4:5540696-5540715 | Msa0310740:intron | 40.0% |
| ! | AGCTTCATTCTTGGAAGCAT+TGG | - | chr2_4:5540730-5540749 | Msa0310740:intron | 40.0% |
| TGGTTTGAAGACACATCACA+TGG | - | chr2_4:5540797-5540816 | Msa0310740:intron | 40.0% | |
| TGGTTATTCTTGTCTCAGCT+CGG | - | chr2_4:5540845-5540864 | Msa0310740:intron | 40.0% | |
| ! | TTGTTGCTTCATGGTACCTT+TGG | - | chr2_4:5540906-5540925 | Msa0310740:intron | 40.0% |
| ! | CAAGAAAAGAAGTGCAAGGA+AGG | + | chr2_4:5540979-5540998 | None:intergenic | 40.0% |
| TCTTGTGCTTCTGTTCATGA+TGG | - | chr2_4:5540999-5541018 | Msa0310740:intron | 40.0% | |
| TGATATGCTTCCGTCATGAA+TGG | - | chr2_4:5541033-5541052 | Msa0310740:intron | 40.0% | |
| GAGTGATTGAACACTCTTGA+TGG | - | chr2_4:5541095-5541114 | Msa0310740:intron | 40.0% | |
| ! | GTTAAGCGTTGTGCCTTAAT+TGG | - | chr2_4:5541117-5541136 | Msa0310740:intron | 40.0% |
| !!! | GTTTTTAGCCGATGTGTTTC+CGG | - | chr2_4:5541263-5541282 | Msa0310740:intron | 40.0% |
| TTTGAACACCTTCCAACTTG+AGG | - | chr2_4:5541354-5541373 | Msa0310740:intron | 40.0% | |
| TTGAACACCTTCCAACTTGA+GGG | - | chr2_4:5541355-5541374 | Msa0310740:intron | 40.0% | |
| ! | GCTTTTCTCTCCTTCATCAA+TGG | - | chr2_4:5538931-5538950 | Msa0310740:CDS | 40.0% |
| AACATGGCATCCATTGATGA+AGG | + | chr2_4:5538944-5538963 | None:intergenic | 40.0% | |
| TCTAGTAGTGAGAGACCAAA+AGG | - | chr2_4:5541792-5541811 | Msa0310740:intron | 40.0% | |
| ! | ATTGGATTCTTTTGCACCCT+TGG | - | chr2_4:5541837-5541856 | Msa0310740:intron | 40.0% |
| AAATAACAACCCTGCACCAA+GGG | + | chr2_4:5541856-5541875 | None:intergenic | 40.0% | |
| AATGAAGAGAGAAAGTGAGG+AGG | - | chr2_4:5542016-5542035 | Msa0310740:intron | 40.0% | |
| ! | AGTTTATTGGGTGACGGTTA+TGG | - | chr2_4:5542058-5542077 | Msa0310740:intron | 40.0% |
| !!! | GACGTGGCAGTTTTGTTTTA+TGG | - | chr2_4:5542091-5542110 | Msa0310740:intron | 40.0% |
| TTGTCTATGAATGTGTTGGG+TGG | - | chr2_4:5542176-5542195 | Msa0310740:CDS | 40.0% | |
| GGAAAGGAATGATTCTTCCA+TGG | - | chr2_4:5542328-5542347 | Msa0310740:CDS | 40.0% | |
| CCCATTTGCTTGAACCTTTG+TGG | + | chr2_4:5538678-5538697 | None:intergenic | 45.0% | |
| CAAGCAAATGGGTCTCTACT+TGG | - | chr2_4:5538686-5538705 | Msa0310740:CDS | 45.0% | |
| TCTACTTGGGTTCAATGTGC+TGG | - | chr2_4:5538700-5538719 | Msa0310740:CDS | 45.0% | |
| AGTTGTAACCTCCCCATAAG+TGG | - | chr2_4:5538853-5538872 | Msa0310740:CDS | 45.0% | |
| GTTGTAACCTCCCCATAAGT+GGG | - | chr2_4:5538854-5538873 | Msa0310740:CDS | 45.0% | |
| AAGTTAACCCACTTATGGGG+AGG | + | chr2_4:5538864-5538883 | None:intergenic | 45.0% | |
| TGACTGCTGCATGATGTTAC+TGG | - | chr2_4:5539872-5539891 | Msa0310740:intron | 45.0% | |
| ! | TTTGGGATCCAATTGCAGCT+TGG | - | chr2_4:5539970-5539989 | Msa0310740:intron | 45.0% |
| !! | GGTCAAGCATTGAAGCATAC+AGG | - | chr2_4:5540142-5540161 | Msa0310740:intron | 45.0% |
| ! | GATAGGCCTTTATTTGCTCC+TGG | - | chr2_4:5540282-5540301 | Msa0310740:intron | 45.0% |
| !!! | GAAGCATTGGTTTTGGCCTA+TGG | - | chr2_4:5540743-5540762 | Msa0310740:intron | 45.0% |
| !! | ACCTTGGTCTTGTTGCTTCA+TGG | - | chr2_4:5540897-5540916 | Msa0310740:intron | 45.0% |
| ACCATGAAGCAACAAGACCA+AGG | + | chr2_4:5540901-5540920 | None:intergenic | 45.0% | |
| CCATAGTCTACAATGGAAGG+AGG | + | chr2_4:5540955-5540974 | None:intergenic | 45.0% | |
| CCTCCTTCCATTGTAGACTA+TGG | - | chr2_4:5540952-5540971 | Msa0310740:intron | 45.0% | |
| CGACGCTTAACCATTCATGA+CGG | + | chr2_4:5541046-5541065 | None:intergenic | 45.0% | |
| !! | TGATATTGGCTTCTACCGGA+TGG | - | chr2_4:5541146-5541165 | Msa0310740:intron | 45.0% |
| CAAGAAGCAACCACAACTCA+AGG | + | chr2_4:5541215-5541234 | None:intergenic | 45.0% | |
| GAGTTGTGGTTGCTTCTTGT+TGG | - | chr2_4:5541216-5541235 | Msa0310740:intron | 45.0% | |
| GAAAGATGCCGGAAACACAT+CGG | + | chr2_4:5541274-5541293 | None:intergenic | 45.0% | |
| TGAACACCTTCCAACTTGAG+GGG | - | chr2_4:5541356-5541375 | Msa0310740:intron | 45.0% | |
| TCTAATAGTCCCCCTCAAGT+TGG | + | chr2_4:5541369-5541388 | None:intergenic | 45.0% | |
| AGTTGTAACCTCCCCATAAG+TGG | - | chr2_4:5538853-5538872 | Msa0310740:CDS | 45.0% | |
| GTTGTAACCTCCCCATAAGT+GGG | - | chr2_4:5538854-5538873 | Msa0310740:CDS | 45.0% | |
| AAGTTAACCCACTTATGGGG+AGG | + | chr2_4:5538864-5538883 | None:intergenic | 45.0% | |
| TAGATATGCAACACCCCATG+AGG | + | chr2_4:5541625-5541644 | None:intergenic | 45.0% | |
| CAAATAACAACCCTGCACCA+AGG | + | chr2_4:5541857-5541876 | None:intergenic | 45.0% | |
| ! | TATAATGGAGATCGCAGCGA+CGG | - | chr2_4:5541950-5541969 | Msa0310740:intron | 45.0% |
| ! | TTTTATGGGAACTGCTGGCA+TGG | - | chr2_4:5542106-5542125 | Msa0310740:intron | 45.0% |
| AGATGTTGGAAGAGAAAGGG+AGG | - | chr2_4:5542297-5542316 | Msa0310740:CDS | 45.0% | |
| AGAGAAAGGGAGGATGAAGA+AGG | - | chr2_4:5542307-5542326 | Msa0310740:CDS | 45.0% | |
| AAGGGAGGATGAAGAAGGAA+AGG | - | chr2_4:5542312-5542331 | Msa0310740:CDS | 45.0% | |
| TCTCATAGCACTCAACTCCA+TGG | + | chr2_4:5542348-5542367 | None:intergenic | 45.0% | |
| TGGAGTTGAGTGCTATGAGA+AGG | - | chr2_4:5542348-5542367 | Msa0310740:CDS | 45.0% | |
| TTGAGTGCTATGAGAAGGAG+TGG | - | chr2_4:5542353-5542372 | Msa0310740:CDS | 45.0% | |
| CAGCGGAAAATCCTTCAAGG+AGG | + | chr2_4:5538998-5539017 | None:intergenic | 50.0% | |
| ACGCAGCGGAAAATCCTTCA+AGG | + | chr2_4:5539001-5539020 | None:intergenic | 50.0% | |
| ! | TTGTCTCAGCTCGGCATTGA+AGG | - | chr2_4:5540854-5540873 | Msa0310740:intron | 50.0% |
| ! | TGTCTCAGCTCGGCATTGAA+GGG | - | chr2_4:5540855-5540874 | Msa0310740:intron | 50.0% |
| GGGCCATAGTCTACAATGGA+AGG | + | chr2_4:5540958-5540977 | None:intergenic | 50.0% | |
| GGAAGGGCCATAGTCTACAA+TGG | + | chr2_4:5540962-5540981 | None:intergenic | 50.0% | |
| !! | TATTGGCTTCTACCGGATGG+TGG | - | chr2_4:5541149-5541168 | Msa0310740:intron | 50.0% |
| AGCAACGCTTAACCACCATC+CGG | + | chr2_4:5541164-5541183 | None:intergenic | 50.0% | |
| GAACACCTTCCAACTTGAGG+GGG | - | chr2_4:5541357-5541376 | Msa0310740:intron | 50.0% | |
| !! | ATAGTCCCCCTCAAGTTGGA+AGG | + | chr2_4:5541365-5541384 | None:intergenic | 50.0% |
| !! | TTCTTTTGCACCCTTGGTGC+AGG | - | chr2_4:5541843-5541862 | Msa0310740:intron | 50.0% |
| !! | TCTTTTGCACCCTTGGTGCA+GGG | - | chr2_4:5541844-5541863 | Msa0310740:intron | 50.0% |
| TTATGGCGAATGTCGTGACG+TGG | - | chr2_4:5542075-5542094 | Msa0310740:intron | 50.0% | |
| AGTGCTATGAGAAGGAGTGG+AGG | - | chr2_4:5542356-5542375 | Msa0310740:CDS | 50.0% | |
| !! | GGTTTTAGCGACGGTGGGAA+TGG | - | chr2_4:5541971-5541990 | Msa0310740:intron | 55.0% |
| !! | CGCAGCGACGGTTTTAGCGA+CGG | - | chr2_4:5541962-5541981 | Msa0310740:intron | 60.0% |
| !! | AGCGACGGTTTTAGCGACGG+TGG | - | chr2_4:5541965-5541984 | Msa0310740:intron | 60.0% |
| !! | GCGACGGTTTTAGCGACGGT+GGG | - | chr2_4:5541966-5541985 | Msa0310740:intron | 60.0% |
| ! | AGAAGGAGTGGAGGTGCAGC+TGG | - | chr2_4:5542365-5542384 | Msa0310740:CDS | 60.0% |
| TAGCGACGGTGGGAATGGCG+TGG | - | chr2_4:5541976-5541995 | Msa0310740:intron | 65.0% | |
| AGCGACGGTGGGAATGGCGT+GGG | - | chr2_4:5541977-5541996 | Msa0310740:intron | 65.0% | |
| ACGGTGGGAATGGCGTGGGA+CGG | - | chr2_4:5541981-5542000 | Msa0310740:intron | 65.0% | |
| GTGGGAATGGCGTGGGACGG+CGG | - | chr2_4:5541984-5542003 | Msa0310740:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 5538442 | 5542391 | 5538442 | ID=Msa0310740;Name=Msa0310740 |
| chr2_4 | mRNA | 5538442 | 5542391 | 5538442 | ID=Msa0310740-mRNA-1;Parent=Msa0310740;Name=Msa0310740-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|0|0|2|0|323 |
| chr2_4 | exon | 5542151 | 5542391 | 5542151 | ID=Msa0310740-mRNA-1:exon:2082;Parent=Msa0310740-mRNA-1 |
| chr2_4 | exon | 5538442 | 5539172 | 5538442 | ID=Msa0310740-mRNA-1:exon:2081;Parent=Msa0310740-mRNA-1 |
| chr2_4 | CDS | 5542151 | 5542391 | 5542151 | ID=Msa0310740-mRNA-1:cds;Parent=Msa0310740-mRNA-1 |
| chr2_4 | CDS | 5538442 | 5539172 | 5538442 | ID=Msa0310740-mRNA-1:cds;Parent=Msa0310740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
