Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0311020 | RDY07826.1 | 77.920 | 702 | 122 | 2 | 1 | 669 | 16 | 717 | 0.0 | 1129 |
| Msa0311020 | RDY07826.1 | 80.508 | 354 | 61 | 1 | 320 | 665 | 13 | 366 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0311020 | sp|Q9CAI3|CADH1_ARATH | 74.294 | 354 | 82 | 2 | 324 | 669 | 3 | 355 | 0.0 | 537 |
| Msa0311020 | sp|Q9CAI3|CADH1_ARATH | 64.535 | 344 | 96 | 2 | 2 | 320 | 3 | 345 | 6.64e-161 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0190250 | Msa0311020 | 0.952367 | 2.820132e-110 | -8.615850e-47 |
| Msa0311020 | Msa1206100 | 0.837630 | 4.642106e-57 | -8.615850e-47 |
| Msa0311020 | Msa1329550 | 0.838005 | 3.717984e-57 | -8.615850e-47 |
| Msa0311020 | Msa1330840 | 0.806638 | 7.463804e-50 | -8.615850e-47 |
| Msa0311020 | Msa1426400 | 0.802483 | 5.491331e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0311020 | MtrunA17_Chr2g0279791 | 93.629 | 361 | 15 | 1 | 317 | 669 | 46 | 406 | 0.0 | 670 |
| Msa0311020 | MtrunA17_Chr2g0279791 | 84.659 | 352 | 29 | 1 | 1 | 327 | 52 | 403 | 0.0 | 606 |
| Msa0311020 | MtrunA17_Chr5g0411911 | 52.436 | 349 | 156 | 3 | 330 | 669 | 13 | 360 | 1.14e-111 | 340 |
| Msa0311020 | MtrunA17_Chr5g0411911 | 44.838 | 339 | 160 | 3 | 8 | 320 | 13 | 350 | 1.36e-94 | 296 |
| Msa0311020 | MtrunA17_Chr2g0279801 | 83.568 | 213 | 23 | 3 | 458 | 669 | 13 | 214 | 1.78e-110 | 332 |
| Msa0311020 | MtrunA17_Chr2g0279801 | 69.524 | 210 | 27 | 4 | 144 | 327 | 13 | 211 | 2.08e-87 | 272 |
| Msa0311020 | MtrunA17_Chr5g0411801 | 51.576 | 349 | 159 | 3 | 330 | 669 | 43 | 390 | 3.25e-110 | 338 |
| Msa0311020 | MtrunA17_Chr5g0411801 | 45.723 | 339 | 157 | 3 | 8 | 320 | 43 | 380 | 1.25e-97 | 305 |
| Msa0311020 | MtrunA17_Chr5g0411821 | 52.874 | 348 | 150 | 5 | 333 | 669 | 14 | 358 | 1.35e-107 | 331 |
| Msa0311020 | MtrunA17_Chr5g0411821 | 46.746 | 338 | 149 | 5 | 11 | 320 | 14 | 348 | 1.47e-95 | 300 |
| Msa0311020 | MtrunA17_Chr5g0411901 | 51.429 | 350 | 158 | 4 | 330 | 669 | 12 | 359 | 1.76e-106 | 327 |
| Msa0311020 | MtrunA17_Chr5g0411901 | 44.838 | 339 | 160 | 3 | 8 | 320 | 12 | 349 | 3.33e-93 | 293 |
| Msa0311020 | MtrunA17_Chr5g0411881 | 52.161 | 347 | 154 | 4 | 333 | 669 | 15 | 359 | 4.19e-106 | 326 |
| Msa0311020 | MtrunA17_Chr5g0411881 | 45.562 | 338 | 153 | 5 | 11 | 320 | 15 | 349 | 1.05e-92 | 291 |
| Msa0311020 | MtrunA17_Chr5g0411811 | 52.890 | 346 | 153 | 3 | 333 | 669 | 14 | 358 | 6.64e-106 | 325 |
| Msa0311020 | MtrunA17_Chr5g0411811 | 46.429 | 336 | 153 | 3 | 11 | 320 | 14 | 348 | 2.55e-93 | 293 |
| Msa0311020 | MtrunA17_Chr5g0411931 | 51.009 | 347 | 158 | 4 | 333 | 669 | 14 | 358 | 7.55e-106 | 325 |
| Msa0311020 | MtrunA17_Chr5g0411931 | 44.282 | 341 | 153 | 4 | 11 | 320 | 14 | 348 | 1.23e-91 | 288 |
| Msa0311020 | MtrunA17_Chr4g0064291 | 51.585 | 347 | 156 | 4 | 333 | 669 | 14 | 358 | 7.99e-105 | 323 |
| Msa0311020 | MtrunA17_Chr4g0064291 | 45.266 | 338 | 154 | 5 | 11 | 320 | 14 | 348 | 2.52e-91 | 288 |
| Msa0311020 | MtrunA17_Chr5g0411841 | 50.867 | 346 | 160 | 3 | 333 | 669 | 14 | 358 | 8.52e-105 | 323 |
| Msa0311020 | MtrunA17_Chr5g0411841 | 45.536 | 336 | 156 | 3 | 11 | 320 | 14 | 348 | 1.52e-95 | 298 |
| Msa0311020 | MtrunA17_Chr5g0411871 | 50.143 | 349 | 164 | 3 | 330 | 669 | 26 | 373 | 2.15e-103 | 320 |
| Msa0311020 | MtrunA17_Chr5g0411871 | 44.248 | 339 | 162 | 3 | 8 | 320 | 26 | 363 | 2.77e-91 | 288 |
| Msa0311020 | MtrunA17_Chr8g0367151 | 52.890 | 346 | 153 | 3 | 333 | 669 | 14 | 358 | 3.43e-103 | 318 |
| Msa0311020 | MtrunA17_Chr8g0367151 | 45.238 | 336 | 157 | 3 | 11 | 320 | 14 | 348 | 2.17e-87 | 277 |
| Msa0311020 | MtrunA17_Chr8g0383721 | 53.623 | 345 | 149 | 4 | 333 | 668 | 14 | 356 | 4.29e-102 | 315 |
| Msa0311020 | MtrunA17_Chr8g0383721 | 46.429 | 336 | 152 | 4 | 11 | 320 | 14 | 347 | 3.25e-85 | 271 |
| Msa0311020 | MtrunA17_Chr5g0411941 | 50.000 | 348 | 160 | 4 | 333 | 669 | 14 | 358 | 3.26e-99 | 308 |
| Msa0311020 | MtrunA17_Chr5g0411941 | 45.266 | 338 | 154 | 4 | 11 | 320 | 14 | 348 | 2.11e-89 | 283 |
| Msa0311020 | MtrunA17_Chr5g0411791 | 53.681 | 326 | 149 | 2 | 345 | 669 | 8 | 332 | 8.95e-99 | 306 |
| Msa0311020 | MtrunA17_Chr5g0411791 | 45.426 | 317 | 146 | 3 | 30 | 320 | 7 | 322 | 2.18e-80 | 258 |
| Msa0311020 | MtrunA17_Chr1g0157021 | 51.020 | 343 | 157 | 4 | 335 | 667 | 15 | 356 | 1.03e-97 | 304 |
| Msa0311020 | MtrunA17_Chr1g0157021 | 43.582 | 335 | 161 | 4 | 13 | 320 | 15 | 348 | 4.41e-82 | 263 |
| Msa0311020 | MtrunA17_Chr1g0208031 | 44.225 | 355 | 187 | 4 | 323 | 667 | 1 | 354 | 1.69e-90 | 285 |
| Msa0311020 | MtrunA17_Chr1g0208031 | 39.583 | 336 | 176 | 3 | 11 | 320 | 12 | 346 | 1.65e-78 | 254 |
| Msa0311020 | MtrunA17_Chr5g0411861 | 62.295 | 61 | 23 | 0 | 609 | 669 | 2 | 62 | 1.23e-19 | 83.2 |
| Msa0311020 | MtrunA17_Chr5g0411861 | 60.784 | 51 | 20 | 0 | 270 | 320 | 2 | 52 | 1.35e-14 | 68.9 |
| Msa0311020 | MtrunA17_Chr8g0385221 | 24.069 | 349 | 227 | 9 | 350 | 664 | 80 | 424 | 2.65e-16 | 81.6 |
| Msa0311020 | MtrunA17_Chr5g0411851 | 51.724 | 58 | 28 | 0 | 11 | 68 | 14 | 71 | 1.18e-15 | 73.6 |
| Msa0311020 | MtrunA17_Chr3g0125911 | 23.919 | 347 | 229 | 10 | 350 | 665 | 37 | 379 | 3.98e-13 | 71.6 |
| Msa0311020 | MtrunA17_Chr4g0021211 | 26.280 | 293 | 190 | 9 | 348 | 618 | 59 | 347 | 9.63e-13 | 70.5 |
| Msa0311020 | MtrunA17_Chr3g0125961 | 23.973 | 292 | 198 | 7 | 350 | 618 | 37 | 327 | 1.42e-12 | 70.1 |
| Msa0311020 | MtrunA17_Chr3g0125941 | 23.919 | 347 | 229 | 10 | 350 | 665 | 38 | 380 | 5.56e-12 | 68.2 |
| Msa0311020 | MtrunA17_Chr6g0474141 | 26.103 | 272 | 174 | 9 | 346 | 601 | 37 | 297 | 1.76e-11 | 66.2 |
| Msa0311020 | MtrunA17_Chr5g0419681 | 25.816 | 337 | 205 | 13 | 348 | 649 | 34 | 360 | 2.27e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0311020 | AT1G72680.1 | 74.294 | 354 | 82 | 2 | 324 | 669 | 3 | 355 | 0.0 | 537 |
| Msa0311020 | AT1G72680.1 | 64.535 | 344 | 96 | 2 | 2 | 320 | 3 | 345 | 6.75e-162 | 469 |
| Msa0311020 | AT4G37970.1 | 48.703 | 347 | 168 | 3 | 331 | 668 | 13 | 358 | 1.62e-101 | 315 |
| Msa0311020 | AT4G37970.1 | 42.899 | 338 | 166 | 4 | 9 | 320 | 13 | 349 | 1.16e-86 | 276 |
| Msa0311020 | AT2G21890.1 | 51.149 | 348 | 155 | 5 | 333 | 668 | 8 | 352 | 5.21e-101 | 314 |
| Msa0311020 | AT2G21890.1 | 44.838 | 339 | 155 | 5 | 11 | 320 | 8 | 343 | 2.12e-87 | 278 |
| Msa0311020 | AT4G39330.1 | 50.435 | 345 | 161 | 3 | 333 | 668 | 14 | 357 | 6.18e-101 | 313 |
| Msa0311020 | AT4G39330.1 | 44.048 | 336 | 161 | 3 | 11 | 320 | 14 | 348 | 1.38e-87 | 278 |
| Msa0311020 | AT2G21730.1 | 51.297 | 347 | 157 | 5 | 333 | 668 | 8 | 353 | 6.36e-100 | 311 |
| Msa0311020 | AT2G21730.1 | 44.675 | 338 | 158 | 5 | 11 | 320 | 8 | 344 | 3.07e-86 | 275 |
| Msa0311020 | AT4G37980.1 | 47.851 | 349 | 172 | 3 | 330 | 669 | 7 | 354 | 9.00e-92 | 289 |
| Msa0311020 | AT4G37980.1 | 43.068 | 339 | 166 | 3 | 8 | 320 | 7 | 344 | 2.69e-81 | 262 |
| Msa0311020 | AT4G37990.1 | 46.705 | 349 | 176 | 3 | 330 | 669 | 7 | 354 | 1.55e-86 | 275 |
| Msa0311020 | AT4G37990.1 | 41.888 | 339 | 170 | 3 | 8 | 320 | 7 | 344 | 1.73e-79 | 257 |
| Msa0311020 | AT3G19450.1 | 43.944 | 355 | 188 | 4 | 323 | 667 | 1 | 354 | 1.11e-80 | 260 |
| Msa0311020 | AT3G19450.1 | 39.489 | 352 | 175 | 5 | 1 | 320 | 1 | 346 | 1.96e-70 | 233 |
| Msa0311020 | AT4G39330.2 | 49.310 | 290 | 137 | 3 | 333 | 613 | 14 | 302 | 1.04e-77 | 251 |
| Msa0311020 | AT4G39330.2 | 42.414 | 290 | 140 | 3 | 11 | 274 | 14 | 302 | 1.62e-69 | 229 |
| Msa0311020 | AT4G34230.1 | 44.737 | 342 | 179 | 3 | 335 | 667 | 13 | 353 | 1.14e-77 | 252 |
| Msa0311020 | AT4G34230.1 | 38.551 | 345 | 185 | 3 | 13 | 331 | 13 | 356 | 4.50e-64 | 216 |
| Msa0311020 | AT4G34230.2 | 44.737 | 342 | 179 | 3 | 335 | 667 | 13 | 353 | 1.14e-77 | 252 |
| Msa0311020 | AT4G34230.2 | 38.551 | 345 | 185 | 3 | 13 | 331 | 13 | 356 | 4.41e-64 | 216 |
| Msa0311020 | AT4G37970.4 | 47.518 | 282 | 138 | 3 | 331 | 604 | 13 | 292 | 2.29e-75 | 244 |
| Msa0311020 | AT4G37970.4 | 41.489 | 282 | 138 | 3 | 9 | 265 | 13 | 292 | 9.40e-68 | 224 |
| Msa0311020 | AT4G37980.2 | 47.985 | 273 | 133 | 2 | 330 | 594 | 7 | 278 | 4.47e-68 | 225 |
| Msa0311020 | AT4G37980.2 | 42.491 | 273 | 131 | 2 | 8 | 255 | 7 | 278 | 9.50e-64 | 213 |
| Msa0311020 | AT4G37970.2 | 49.138 | 232 | 109 | 2 | 331 | 554 | 13 | 243 | 2.96e-64 | 213 |
| Msa0311020 | AT4G37970.2 | 41.810 | 232 | 109 | 2 | 9 | 215 | 13 | 243 | 2.24e-56 | 192 |
| Msa0311020 | AT4G37970.3 | 49.138 | 232 | 109 | 2 | 331 | 554 | 13 | 243 | 4.27e-64 | 213 |
| Msa0311020 | AT4G37970.3 | 41.810 | 232 | 109 | 2 | 9 | 215 | 13 | 243 | 1.96e-56 | 192 |
| Msa0311020 | AT5G63620.3 | 27.273 | 231 | 142 | 6 | 348 | 556 | 80 | 306 | 1.10e-15 | 79.3 |
| Msa0311020 | AT5G63620.2 | 25.714 | 315 | 200 | 9 | 348 | 632 | 80 | 390 | 1.19e-15 | 80.1 |
| Msa0311020 | AT5G63620.1 | 25.714 | 315 | 200 | 9 | 348 | 632 | 80 | 390 | 1.46e-15 | 80.1 |
| Msa0311020 | AT5G43940.2 | 24.022 | 358 | 211 | 13 | 350 | 663 | 48 | 388 | 3.06e-13 | 72.4 |
| Msa0311020 | AT5G43940.1 | 24.022 | 358 | 211 | 13 | 350 | 663 | 36 | 376 | 3.19e-13 | 72.4 |
| Msa0311020 | AT1G32780.1 | 25.552 | 317 | 188 | 10 | 350 | 626 | 37 | 345 | 1.13e-12 | 70.9 |
| Msa0311020 | AT5G51970.1 | 24.419 | 258 | 173 | 6 | 346 | 591 | 39 | 286 | 2.32e-12 | 69.7 |
| Msa0311020 | AT5G51970.2 | 24.419 | 258 | 173 | 6 | 346 | 591 | 39 | 286 | 2.32e-12 | 69.7 |
| Msa0311020 | AT1G77120.1 | 25.589 | 297 | 187 | 9 | 350 | 618 | 36 | 326 | 1.23e-11 | 67.4 |
Find 217 sgRNAs with CRISPR-Local
Find 512 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCATATGGCAGTAAAATT+TGG | 0.150937 | 2_4:-5844712 | Msa0311020:CDS |
| AAGAGCTTTATTTGCATTAC+TGG | 0.200410 | 2_4:+5843863 | None:intergenic |
| ATTGGAATCAGTTCTATTTC+TGG | 0.200827 | 2_4:+5844117 | None:intergenic |
| GAGCATTTATATATATATTT+AGG | 0.204718 | 2_4:-5843723 | Msa0311020:three_prime_UTR |
| ATCATAATCAACACCATTAA+AGG | 0.217231 | 2_4:+5845096 | None:intergenic |
| ATCATAATCAACACAATTAA+AGG | 0.227997 | 2_4:+5851184 | None:intergenic |
| GGATCAGTTTACACCTTTAA+TGG | 0.243928 | 2_4:-5845109 | Msa0311020:CDS |
| ATGCAACATTACCTAAATTA+AGG | 0.258422 | 2_4:+5850401 | None:intergenic |
| TCTATATCTGGCAATCATTA+TGG | 0.259024 | 2_4:+5843911 | None:intergenic |
| GAGGAGGCGCTGAGCTTTCT+TGG | 0.260212 | 2_4:-5850726 | Msa0311020:CDS |
| TTGTTATGCTGATGTAATTA+TGG | 0.279535 | 2_4:-5851497 | Msa0311020:CDS |
| TTTGTTATGCTGATGTAATT+TGG | 0.289646 | 2_4:-5845410 | Msa0311020:CDS |
| GAGGAGGCGCTGAGCCTTCT+TGG | 0.291889 | 2_4:-5844637 | Msa0311020:CDS |
| TCTGGTGTTCTGGTCTTAGT+TGG | 0.292846 | 2_4:-5844369 | Msa0311020:CDS |
| ATTGGAATCAGTTCTATATC+TGG | 0.301960 | 2_4:+5850205 | None:intergenic |
| TTACCTAAGTTAAGGCTTGC+AGG | 0.313929 | 2_4:+5844321 | None:intergenic |
| GTAAAATTTGGGAAGGCATT+TGG | 0.314204 | 2_4:-5844700 | Msa0311020:CDS |
| TCTTGAGAGGGTCGTAAATA+AGG | 0.324188 | 2_4:-5850164 | Msa0311020:CDS |
| TTACCTAAATTAAGGCTTGC+AGG | 0.324389 | 2_4:+5850409 | None:intergenic |
| TCTGAAGATATCTGGTGTTC+TGG | 0.326227 | 2_4:-5844379 | Msa0311020:CDS |
| TCTGAAGATATCTGGTGTTC+TGG | 0.326816 | 2_4:-5850467 | Msa0311020:CDS |
| TCTGGTGTTCTGGCCTTAGT+TGG | 0.332424 | 2_4:-5850457 | Msa0311020:CDS |
| AGCCCTGCAAGCCTTAATTT+AGG | 0.333583 | 2_4:-5850412 | Msa0311020:intron |
| TCTTGAGAGGGTCATAAATA+AGG | 0.341469 | 2_4:-5844076 | Msa0311020:CDS |
| TTGTTATGCTGATGTAATTT+GGG | 0.354641 | 2_4:-5845409 | Msa0311020:CDS |
| TGTACCACCTGCAACACTTC+CGG | 0.359100 | 2_4:+5844188 | None:intergenic |
| TGTACCACCTGCAACACTTC+CGG | 0.359100 | 2_4:+5850276 | None:intergenic |
| ACCTTGAAACGCTGGACATT+AGG | 0.363094 | 2_4:+5845220 | None:intergenic |
| ACCTTGAAACGCTGGACATT+AGG | 0.363094 | 2_4:+5851308 | None:intergenic |
| CTTATCAGACACGAGATTGC+TGG | 0.363214 | 2_4:-5845262 | Msa0311020:intron |
| CTTATCAGACACGAGATTGC+TGG | 0.363214 | 2_4:-5851350 | Msa0311020:intron |
| GTCATATGGCAGTAAAATTT+GGG | 0.370755 | 2_4:-5844711 | Msa0311020:CDS |
| ATGAAGTTGATTCTGAAGTT+AGG | 0.371550 | 2_4:-5843994 | Msa0311020:three_prime_UTR |
| TTGGAATCAGTTCTATTTCT+GGG | 0.372653 | 2_4:+5844118 | None:intergenic |
| GCAGGTCCTTTGCTTTGTGC+TGG | 0.376092 | 2_4:-5844817 | Msa0311020:CDS |
| GATTAGATGAAACAACAAAT+TGG | 0.376372 | 2_4:+5844608 | None:intergenic |
| GATTAGATGAAACAACAAAT+TGG | 0.376372 | 2_4:+5850697 | None:intergenic |
| GCAGGTCCTTTGCTTTGTGC+TGG | 0.377353 | 2_4:-5850905 | Msa0311020:CDS |
| GAAATAGAACTGATTCCAAT+TGG | 0.379523 | 2_4:-5844114 | Msa0311020:CDS |
| GTAAGCTAGCATGAAATGTT+TGG | 0.380922 | 2_4:-5843652 | Msa0311020:three_prime_UTR |
| TCTCTTGGAGTGGTTGGTCT+TGG | 0.380973 | 2_4:-5844742 | Msa0311020:CDS |
| ATGTCACTTCTGAAGATATC+TGG | 0.387083 | 2_4:-5850475 | Msa0311020:CDS |
| GATATAGAACTGATTCCAAT+TGG | 0.391907 | 2_4:-5850202 | Msa0311020:CDS |
| CTCTTGACAGGGTCATAGAT+AGG | 0.393016 | 2_4:-5843845 | Msa0311020:three_prime_UTR |
| CTGGTGTTCTGGTCTTAGTT+GGG | 0.395199 | 2_4:-5844368 | Msa0311020:CDS |
| GTCGACTTCTGTGCTGCAAA+TGG | 0.396290 | 2_4:-5844147 | Msa0311020:CDS |
| GCAGAATCAAGAACTGTTGC+CGG | 0.397735 | 2_4:-5850295 | Msa0311020:intron |
| CTTGGAGTGGTTGGTCTTGG+TGG | 0.399951 | 2_4:-5844739 | Msa0311020:CDS |
| TCTTGGTGGCCTCGGTCATA+TGG | 0.406264 | 2_4:-5844725 | Msa0311020:CDS |
| GTTGACTTCTGTGCTGCAAA+TGG | 0.409428 | 2_4:-5850235 | Msa0311020:CDS |
| ATGACACTTCTGAAGATATC+TGG | 0.409523 | 2_4:-5844387 | Msa0311020:CDS |
| ATGCAACATTACCTAAGTTA+AGG | 0.414851 | 2_4:+5844313 | None:intergenic |
| CTGGTGTGTAATATCTAAAA+AGG | 0.415867 | 2_4:+5843958 | None:intergenic |
| TTTATAATTGACACGGCATC+GGG | 0.416518 | 2_4:-5844432 | Msa0311020:CDS |
| TTTATAATTGACACGGCATC+GGG | 0.416518 | 2_4:-5850520 | Msa0311020:CDS |
| TCAGGATCAAGAACTGTTGC+CGG | 0.416934 | 2_4:-5844207 | Msa0311020:intron |
| GCTTCATTTGAGTACCCAAT+TGG | 0.417911 | 2_4:+5844099 | None:intergenic |
| GCTTCATTTGAGTACCCAAT+TGG | 0.417911 | 2_4:+5850187 | None:intergenic |
| TAAATAAGGACGTGAAATAT+CGG | 0.419184 | 2_4:-5850150 | Msa0311020:intron |
| AATGACTCAGACAAAACAAT+AGG | 0.424397 | 2_4:-5843628 | None:intergenic |
| GGGCTGAATTTGACTTCACT+TGG | 0.427549 | 2_4:+5844342 | None:intergenic |
| GGGCTGAATTTGACTTCACT+TGG | 0.427549 | 2_4:+5850430 | None:intergenic |
| TAAATAAGGACGTGAAATAT+CGG | 0.430816 | 2_4:-5844062 | Msa0311020:CDS |
| ACTGTTGCCGGAAGTGTTGC+AGG | 0.432996 | 2_4:-5844195 | Msa0311020:CDS |
| ACTGTTGCCGGAAGTGTTGC+AGG | 0.432996 | 2_4:-5850283 | Msa0311020:CDS |
| CTGGTGTTCTGGCCTTAGTT+GGG | 0.434067 | 2_4:-5850456 | Msa0311020:CDS |
| TGAACATTTCTCTTTGCTGC+TGG | 0.434281 | 2_4:+5843939 | None:intergenic |
| GCAGGCGTTAGCTAAATCAT+TGG | 0.435251 | 2_4:-5844457 | Msa0311020:intron |
| ACAACTTACCCCGGCACAAC+AGG | 0.440053 | 2_4:+5845357 | None:intergenic |
| ACAACTTACCCCGGCACAAC+AGG | 0.440053 | 2_4:+5851445 | None:intergenic |
| ATTTCTCTAATTCTACTTGA+GGG | 0.442191 | 2_4:+5844017 | None:intergenic |
| ATGCAAATAAAGCTCTTGAC+AGG | 0.444374 | 2_4:-5843857 | Msa0311020:three_prime_UTR |
| TCCTAATGTCCAGCGTTTCA+AGG | 0.445977 | 2_4:-5845221 | Msa0311020:CDS |
| TCCTAATGTCCAGCGTTTCA+AGG | 0.445977 | 2_4:-5851309 | Msa0311020:CDS |
| ATAAATGCTCTTTGAGCTGT+TGG | 0.449568 | 2_4:+5843736 | None:intergenic |
| GTGGTTGGTCTTGGTGGCCT+CGG | 0.451789 | 2_4:-5844733 | Msa0311020:CDS |
| TTCAAAGTATCCTGTTGTGC+CGG | 0.454354 | 2_4:-5845367 | Msa0311020:CDS |
| TTCAAAGTATCCTGTTGTGC+CGG | 0.454354 | 2_4:-5851455 | Msa0311020:CDS |
| GCAGGCGTTAGCTAAAACAT+TGG | 0.456267 | 2_4:-5850545 | Msa0311020:intron |
| AATCAACCTGGTAAGTCTCT+TGG | 0.459390 | 2_4:-5844757 | Msa0311020:CDS |
| TCAAAGTATCCTGTTGTGCC+GGG | 0.460698 | 2_4:-5845366 | Msa0311020:CDS |
| TCAAAGTATCCTGTTGTGCC+GGG | 0.460698 | 2_4:-5851454 | Msa0311020:CDS |
| TTGGTGAAGATTGCCTTGCA+TGG | 0.462156 | 2_4:-5852041 | Msa0311020:CDS |
| CACCTTCGATTGAATCTGTA+AGG | 0.468212 | 2_4:+5851988 | None:intergenic |
| AGCTATCCTTTAGCTTCAGC+AGG | 0.468468 | 2_4:-5844835 | Msa0311020:CDS |
| ACACGAGATTGCTGGGGTTG+TGG | 0.469150 | 2_4:-5845254 | Msa0311020:CDS |
| ACACGAGATTGCTGGGGTTG+TGG | 0.469150 | 2_4:-5851342 | Msa0311020:CDS |
| GAATCAACCTGGTAGTCTCT+TGG | 0.469975 | 2_4:-5850846 | Msa0311020:CDS |
| GCTGGGGTTGTGGCAAAGGT+TGG | 0.470558 | 2_4:-5845244 | Msa0311020:CDS |
| GCTGGGGTTGTGGCAAAGGT+TGG | 0.470558 | 2_4:-5851332 | Msa0311020:CDS |
| ATTCATATTATGTCGCATCA+TGG | 0.471650 | 2_4:+5844777 | None:intergenic |
| ATTCATATTATGTCGCATCA+TGG | 0.471650 | 2_4:+5850865 | None:intergenic |
| TTATCAGACACGAGATTGCT+GGG | 0.475272 | 2_4:-5845261 | Msa0311020:intron |
| TTATCAGACACGAGATTGCT+GGG | 0.475272 | 2_4:-5851349 | Msa0311020:intron |
| AGCTATCCTTTAGCTTCGGC+AGG | 0.476804 | 2_4:-5850923 | Msa0311020:CDS |
| TGGTGATTGCTAAGGGCTCT+CGG | 0.477999 | 2_4:-5851559 | Msa0311020:intron |
| TAAAAGCTATCCTTTAGCTT+CGG | 0.482887 | 2_4:-5850927 | Msa0311020:CDS |
| GGCATTTGGTTTGCGTGTAA+CGG | 0.491251 | 2_4:-5844686 | Msa0311020:CDS |
| GGTGATTGCTAAGGGCTCTC+GGG | 0.491662 | 2_4:-5851558 | Msa0311020:intron |
| ATCTTCAGAAGTGTCATGTA+AGG | 0.496050 | 2_4:+5844393 | None:intergenic |
| AGGTGGTACAAAAGAAATAC+AGG | 0.497345 | 2_4:-5844175 | Msa0311020:CDS |
| AGGTGGTACAAAAGAAATAC+AGG | 0.497345 | 2_4:-5850263 | Msa0311020:CDS |
| ATTTAGACGAGTTTCGAGTT+CGG | 0.502593 | 2_4:-5843790 | Msa0311020:three_prime_UTR |
| GGTAAGTCTCTTGGAGTGGT+TGG | 0.503337 | 2_4:-5844748 | Msa0311020:CDS |
| TGGTGATTGCTAAGGGAGCT+CGG | 0.505418 | 2_4:-5845471 | Msa0311020:intron |
| TATGATGGTACAATTACAAA+AGG | 0.507275 | 2_4:-5845079 | Msa0311020:CDS |
| TATGATGGTACAATTACAAA+AGG | 0.507275 | 2_4:-5851167 | Msa0311020:CDS |
| TTCACTTGGGAACCCAACTA+AGG | 0.508145 | 2_4:+5850444 | None:intergenic |
| TGGGCAGCAAGAGATGCATC+TGG | 0.511542 | 2_4:-5845969 | Msa0311020:CDS |
| TTGACTTCTGTGCTGCAAAT+GGG | 0.512751 | 2_4:-5850234 | Msa0311020:CDS |
| TTTAATGGTGTTGATTATGA+TGG | 0.517784 | 2_4:-5845094 | Msa0311020:CDS |
| TTTAATTGTGTTGATTATGA+TGG | 0.517784 | 2_4:-5851182 | Msa0311020:CDS |
| TCGACTTCTGTGCTGCAAAT+GGG | 0.518039 | 2_4:-5844146 | Msa0311020:CDS |
| GGTGATTGCTAAGGGAGCTC+GGG | 0.518767 | 2_4:-5845470 | Msa0311020:intron |
| AAAGGACCTGCCGAAGCTAA+AGG | 0.522850 | 2_4:+5850917 | None:intergenic |
| GGACTTACATCAACTCGTGC+AGG | 0.522881 | 2_4:-5851265 | Msa0311020:CDS |
| AAAGGTGTAAACTGATCCCT+TGG | 0.525198 | 2_4:+5851202 | None:intergenic |
| ATCTTCAGAAGTGACATGTA+AGG | 0.525421 | 2_4:+5850481 | None:intergenic |
| CATCTCTTGCTGCCCATGCA+AGG | 0.525887 | 2_4:+5845976 | None:intergenic |
| CATCTCTTGCTGCCCATGCA+AGG | 0.525887 | 2_4:+5852028 | None:intergenic |
| CACGAGCATTTCAAAGAAAG+AGG | 0.527313 | 2_4:-5844656 | Msa0311020:CDS |
| TTGGTGAAGATTGCCTTGCA+TGG | 0.528700 | 2_4:-5845989 | Msa0311020:CDS |
| TTCAAGGTTGGTGACCATGT+TGG | 0.531246 | 2_4:-5845205 | Msa0311020:CDS |
| TTCAAGGTTGGTGACCATGT+TGG | 0.531246 | 2_4:-5851293 | Msa0311020:CDS |
| AGTGTCATGTAAGGATCAAA+CGG | 0.531817 | 2_4:+5844402 | None:intergenic |
| TTCATGTACTACAATGGAAG+TGG | 0.531892 | 2_4:+5845048 | None:intergenic |
| CACTAGTATGTCAAAGAAAG+AGG | 0.532272 | 2_4:-5850745 | Msa0311020:CDS |
| AAATAGAACTGATTCCAATT+GGG | 0.533719 | 2_4:-5844113 | Msa0311020:CDS |
| TATTTCTCTAATTCTACTTG+AGG | 0.534812 | 2_4:+5844016 | None:intergenic |
| CTAGAAATTCATTGTGCCAA+GGG | 0.534931 | 2_4:-5851218 | Msa0311020:CDS |
| AAAGGACCTGCTGAAGCTAA+AGG | 0.536529 | 2_4:+5844829 | None:intergenic |
| TACCTAAATTAAGGCTTGCA+GGG | 0.536529 | 2_4:+5850410 | None:intergenic |
| AGTGACATGTAAGGATCAAA+CGG | 0.538848 | 2_4:+5850490 | None:intergenic |
| AATGTCCAGCGTTTCAAGGT+TGG | 0.539954 | 2_4:-5845217 | Msa0311020:CDS |
| AATGTCCAGCGTTTCAAGGT+TGG | 0.539954 | 2_4:-5851305 | Msa0311020:CDS |
| TTGGAATCAGTTCTATATCT+GGG | 0.540556 | 2_4:+5850206 | None:intergenic |
| GATTGCTGGGGTTGTGGCAA+AGG | 0.541441 | 2_4:-5845248 | Msa0311020:CDS |
| GATTGCTGGGGTTGTGGCAA+AGG | 0.541441 | 2_4:-5851336 | Msa0311020:CDS |
| GGCTGAATTTGACTTCACTT+GGG | 0.543028 | 2_4:+5844343 | None:intergenic |
| GGCTGAATTTGACTTCACTT+GGG | 0.543028 | 2_4:+5850431 | None:intergenic |
| TTCATATTATGTCGCATCAT+GGG | 0.544385 | 2_4:+5844778 | None:intergenic |
| TTCATATTATGTCGCATCAT+GGG | 0.544385 | 2_4:+5850866 | None:intergenic |
| TACCTAAGTTAAGGCTTGCA+GGG | 0.544423 | 2_4:+5844322 | None:intergenic |
| TACAAAAGAAATACAGGAGA+TGG | 0.547882 | 2_4:-5850257 | Msa0311020:CDS |
| ATTCTGAAGTTAGGCATGGA+AGG | 0.548063 | 2_4:-5843985 | Msa0311020:three_prime_UTR |
| TGGTGAAGATTGCCTTGCAT+GGG | 0.548223 | 2_4:-5845988 | Msa0311020:CDS |
| TGGTGAAGATTGCCTTGCAT+GGG | 0.548223 | 2_4:-5852040 | Msa0311020:CDS |
| TACAAAAGAAATACAGGAGA+TGG | 0.550321 | 2_4:-5844169 | Msa0311020:CDS |
| ATTAGAAGTTCATTGTGTGA+AGG | 0.552235 | 2_4:-5845131 | Msa0311020:CDS |
| TCGGTTTCGAGAACAAACTA+AGG | 0.553265 | 2_4:-5843771 | Msa0311020:three_prime_UTR |
| TGCCTTACAGATTCAATCGA+AGG | 0.555239 | 2_4:-5851990 | Msa0311020:intron |
| GTTGGTGACCATGTTGGAGT+GGG | 0.558085 | 2_4:-5851287 | Msa0311020:CDS |
| TTAGAAGTTCATTGTGTGAA+GGG | 0.558615 | 2_4:-5845130 | Msa0311020:CDS |
| CTTCAATTGTAGTAAATGAA+AGG | 0.559479 | 2_4:-5851133 | Msa0311020:intron |
| AACCACTCCAAGAGACTACC+AGG | 0.563211 | 2_4:+5850839 | None:intergenic |
| GTGACATGTAAGGATCAAAC+GGG | 0.563218 | 2_4:+5850491 | None:intergenic |
| GTACTTACATCAACTCATGC+AGG | 0.564363 | 2_4:-5845177 | Msa0311020:CDS |
| GTGTCATGTAAGGATCAAAC+GGG | 0.564881 | 2_4:+5844403 | None:intergenic |
| CGACATAATATGAATCAACC+TGG | 0.568407 | 2_4:-5844769 | Msa0311020:CDS |
| ATATAGAACTGATTCCAATT+GGG | 0.570455 | 2_4:-5850201 | Msa0311020:CDS |
| AGCCCTGCAAGCCTTAACTT+AGG | 0.570562 | 2_4:-5844324 | Msa0311020:intron |
| AGAATAGCTATGAGTTCTGA+AGG | 0.570846 | 2_4:-5852066 | Msa0311020:exon |
| GTTGATTCTGAAGTTAGGCA+TGG | 0.571934 | 2_4:-5843989 | Msa0311020:three_prime_UTR |
| TCTTGACAGGGTCATAGATA+GGG | 0.572834 | 2_4:-5843844 | Msa0311020:three_prime_UTR |
| TTACCTTTCATGTACTACAA+TGG | 0.576358 | 2_4:+5845042 | None:intergenic |
| CATCTAATCAAGAAGAGATG+AGG | 0.579627 | 2_4:-5844594 | Msa0311020:CDS |
| CATCTAATCAAGAAGAGATG+AGG | 0.579627 | 2_4:-5850683 | Msa0311020:CDS |
| CGACATAATATGAATCAACC+TGG | 0.580130 | 2_4:-5850857 | Msa0311020:CDS |
| CAAATTGGTCTGCACCAAGA+AGG | 0.580444 | 2_4:+5844623 | None:intergenic |
| CTTCCATTGTAGTACATGAA+AGG | 0.582389 | 2_4:-5845045 | Msa0311020:intron |
| GTGATTCCAGCACAAAGCAA+AGG | 0.590358 | 2_4:+5844811 | None:intergenic |
| GTGATTCCAGCACAAAGCAA+AGG | 0.590358 | 2_4:+5850899 | None:intergenic |
| GGTCACCAACCTTGAAACGC+TGG | 0.591766 | 2_4:+5845212 | None:intergenic |
| GGTCACCAACCTTGAAACGC+TGG | 0.591766 | 2_4:+5851300 | None:intergenic |
| TGGGCAGCAAGAGATGCATC+TGG | 0.593361 | 2_4:-5852021 | Msa0311020:CDS |
| ACTAGAAATTCATTGTGCCA+AGG | 0.594999 | 2_4:-5851219 | Msa0311020:CDS |
| ATCTAATCAAGAAGAGATGA+GGG | 0.596139 | 2_4:-5844593 | Msa0311020:intron |
| ATCTAATCAAGAAGAGATGA+GGG | 0.596139 | 2_4:-5850682 | Msa0311020:intron |
| GGTTGGTGACCATGTTGGAG+TGG | 0.596675 | 2_4:-5851288 | Msa0311020:CDS |
| ACTCAAATGAAGCTCTTGAG+AGG | 0.606095 | 2_4:-5844089 | Msa0311020:CDS |
| ACTCAAATGAAGCTCTTGAG+AGG | 0.606095 | 2_4:-5850177 | Msa0311020:CDS |
| GACTTACATCAACTCGTGCA+GGG | 0.614119 | 2_4:-5851264 | Msa0311020:CDS |
| TTTGGGCAAGGAATAAACAT+GGG | 0.615486 | 2_4:-5845392 | Msa0311020:CDS |
| ACCTGGTAAGTCTCTTGGAG+TGG | 0.618165 | 2_4:-5844752 | Msa0311020:CDS |
| ATTATGGCAAGGAATAAACA+TGG | 0.618473 | 2_4:-5851481 | Msa0311020:CDS |
| TTATGGCAAGGAATAAACAT+GGG | 0.622219 | 2_4:-5851480 | Msa0311020:CDS |
| TATGGCAGTAAAATTTGGGA+AGG | 0.622661 | 2_4:-5844707 | Msa0311020:CDS |
| CTCAAATGAAGCTCTTGAGA+GGG | 0.622942 | 2_4:-5844088 | Msa0311020:CDS |
| CTCAAATGAAGCTCTTGAGA+GGG | 0.622942 | 2_4:-5850176 | Msa0311020:CDS |
| GATGGTACAATTACAAAAGG+AGG | 0.626222 | 2_4:-5845076 | Msa0311020:CDS |
| GATGGTACAATTACAAAAGG+AGG | 0.626222 | 2_4:-5851164 | Msa0311020:CDS |
| ATTTGGGCAAGGAATAAACA+TGG | 0.627500 | 2_4:-5845393 | Msa0311020:CDS |
| ATGCTGATGTAATTTGGGCA+AGG | 0.629018 | 2_4:-5845404 | Msa0311020:CDS |
| TACTTACATCAACTCATGCA+GGG | 0.634667 | 2_4:-5845176 | Msa0311020:CDS |
| TGTAAGTCCCCACTCCAACA+TGG | 0.635422 | 2_4:+5851279 | None:intergenic |
| CAAAGTATCCTGTTGTGCCG+GGG | 0.639115 | 2_4:-5845365 | Msa0311020:intron |
| CAAAGTATCCTGTTGTGCCG+GGG | 0.639115 | 2_4:-5851453 | Msa0311020:intron |
| GGTTGGTGACCATGTTGGAG+TGG | 0.639841 | 2_4:-5845200 | Msa0311020:CDS |
| TTGGGCAAGGAATAAACATG+GGG | 0.641841 | 2_4:-5845391 | Msa0311020:CDS |
| TATGTTAAAATTACACACTG+TGG | 0.642017 | 2_4:-5845435 | Msa0311020:CDS |
| TATGTTAAAATTACACACTG+TGG | 0.642017 | 2_4:-5851523 | Msa0311020:CDS |
| GAGCATTTCAAAGAAAGAGG+AGG | 0.653117 | 2_4:-5844653 | Msa0311020:CDS |
| TGCAAATAAAGCTCTTGACA+GGG | 0.657934 | 2_4:-5843856 | Msa0311020:three_prime_UTR |
| GTTGGTGACCATGTTGGAGT+GGG | 0.658549 | 2_4:-5845199 | Msa0311020:CDS |
| TGTAAGTACCCACTCCAACA+TGG | 0.660381 | 2_4:+5845191 | None:intergenic |
| TTGGTGACCATGTTGGAGTG+GGG | 0.671187 | 2_4:-5851286 | Msa0311020:CDS |
| ACCACTCCAAGAGACTTACC+AGG | 0.671497 | 2_4:+5844751 | None:intergenic |
| AACCTGGTAGTCTCTTGGAG+TGG | 0.673292 | 2_4:-5850841 | Msa0311020:intron |
| TATGGCAAGGAATAAACATG+GGG | 0.673434 | 2_4:-5851479 | Msa0311020:CDS |
| TAGTATGTCAAAGAAAGAGG+AGG | 0.682298 | 2_4:-5850742 | Msa0311020:CDS |
| ATGCTGATGTAATTATGGCA+AGG | 0.694786 | 2_4:-5851492 | Msa0311020:CDS |
| TATCAGACACGAGATTGCTG+GGG | 0.696618 | 2_4:-5845260 | Msa0311020:intron |
| TATCAGACACGAGATTGCTG+GGG | 0.696618 | 2_4:-5851348 | Msa0311020:intron |
| GCTATGAGTTCTGAAGGTGT+TGG | 0.722313 | 2_4:-5852060 | Msa0311020:CDS |
| GCTATGAGTTCTGAAAGTGT+TGG | 0.742932 | 2_4:-5846008 | Msa0311020:CDS |
| GTTGCCGGAAGTGTTGCAGG+TGG | 0.789484 | 2_4:-5844192 | Msa0311020:CDS |
| GTTGCCGGAAGTGTTGCAGG+TGG | 0.789484 | 2_4:-5850280 | Msa0311020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr2_4:5848433-5848452 | Msa0311020:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr2_4:5848434-5848453 | Msa0311020:intron | 0.0% |
| !!! | TAATTCAAGTTAATTATTAA+TGG | - | chr2_4:5846962-5846981 | Msa0311020:intron | 10.0% |
| !!! | GTGTTATTTAAAATAATATT+TGG | - | chr2_4:5847371-5847390 | Msa0311020:intron | 10.0% |
| !!! | ATTTTAAAAGATTAGAAATA+GGG | - | chr2_4:5847495-5847514 | Msa0311020:intron | 10.0% |
| !!! | GTTATTCTTTAAAAAAAAAA+AGG | + | chr2_4:5848325-5848344 | None:intergenic | 10.0% |
| !! | TAAAGATAATAAAAAATCAA+AGG | + | chr2_4:5848878-5848897 | None:intergenic | 10.0% |
| !!! | ATTAAACTCATTTTATTTCA+AGG | - | chr2_4:5843953-5843972 | Msa0311020:three_prime_UTR | 15.0% |
| !!! | TTTTTTGGAAAAATTTAACA+TGG | + | chr2_4:5844093-5844112 | None:intergenic | 15.0% |
| !!! | TTCATAACTTCTTTTATATT+TGG | - | chr2_4:5844714-5844733 | Msa0311020:CDS | 15.0% |
| !!! | GTTTTTTTTATCTAAAGTAA+TGG | - | chr2_4:5845118-5845137 | Msa0311020:CDS | 15.0% |
| !! | AAAAAAAAAAAAAGTCACTT+AGG | - | chr2_4:5846267-5846286 | Msa0311020:intron | 15.0% |
| !! | GACACATAATTTAAAAAATT+TGG | + | chr2_4:5847085-5847104 | None:intergenic | 15.0% |
| !!! | GATTTTAAAAGATTAGAAAT+AGG | - | chr2_4:5847494-5847513 | Msa0311020:intron | 15.0% |
| !!! | TTTTAAAAGATTAGAAATAG+GGG | - | chr2_4:5847496-5847515 | Msa0311020:intron | 15.0% |
| !! | AAAAAATGTATAGATTTCAA+TGG | - | chr2_4:5847922-5847941 | Msa0311020:intron | 15.0% |
| !! | AGTAAAAAAAAATGAAATTC+TGG | + | chr2_4:5848145-5848164 | None:intergenic | 15.0% |
| !! | TAATATAAATATGTAAGAAC+AGG | + | chr2_4:5848293-5848312 | None:intergenic | 15.0% |
| !! | TTATCAATTTATTGTTCAAA+CGG | - | chr2_4:5848731-5848750 | Msa0311020:intron | 15.0% |
| !! | TATAAGAAGAAGATAATTTA+TGG | - | chr2_4:5848763-5848782 | Msa0311020:intron | 15.0% |
| !!! | ATAATTTTTCAATAACAAAG+TGG | + | chr2_4:5848829-5848848 | None:intergenic | 15.0% |
| !!! | AAAATTTTAAAAGATTGTGT+AGG | + | chr2_4:5849053-5849072 | None:intergenic | 15.0% |
| !! | CTAATAAATCAAACAAATTA+TGG | + | chr2_4:5849603-5849622 | None:intergenic | 15.0% |
| !! | TAATTATATGAAATGAATTG+AGG | - | chr2_4:5849627-5849646 | Msa0311020:intron | 15.0% |
| !!! | TTCATAACTTCTTTTATATA+TGG | - | chr2_4:5850802-5850821 | Msa0311020:intron | 15.0% |
| !! | GAGCATTTATATATATATTT+AGG | - | chr2_4:5851973-5851992 | Msa0311020:intron | 15.0% |
| !!! | TGTCAGGATTTATTATTTTT+TGG | + | chr2_4:5844108-5844127 | None:intergenic | 20.0% |
| !! | ATCATAATCAACACAATTAA+AGG | + | chr2_4:5844515-5844534 | None:intergenic | 20.0% |
| !!! | TTTAATTGTGTTGATTATGA+TGG | - | chr2_4:5844514-5844533 | Msa0311020:intron | 20.0% |
| !! | TAATAAATTTCAGCAAGATA+AGG | + | chr2_4:5844641-5844660 | None:intergenic | 20.0% |
| !!! | ATTGGATTTTATAATTGACA+CGG | - | chr2_4:5845169-5845188 | Msa0311020:CDS | 20.0% |
| !! | ATGAATGAAGGATATTATTT+CGG | + | chr2_4:5845375-5845394 | None:intergenic | 20.0% |
| !! | GAGCATTTATAGATATATTT+AGG | - | chr2_4:5845856-5845875 | Msa0311020:intron | 20.0% |
| !!! | TTATCTTATTTCTAGTATAC+CGG | - | chr2_4:5846009-5846028 | Msa0311020:CDS | 20.0% |
| !!! | AGCAATTTCTTTTTTGTTTT+GGG | + | chr2_4:5846922-5846941 | None:intergenic | 20.0% |
| !! | ATTAAGATGCATAAATAGAA+GGG | + | chr2_4:5846992-5847011 | None:intergenic | 20.0% |
| !!! | TGTTCAATTGACTTTTTTTT+AGG | - | chr2_4:5847204-5847223 | Msa0311020:intron | 20.0% |
| !!! | AATATTTGGGTGATAATTTT+TGG | - | chr2_4:5847385-5847404 | Msa0311020:intron | 20.0% |
| !!! | ATATTTGGGTGATAATTTTT+GGG | - | chr2_4:5847386-5847405 | Msa0311020:intron | 20.0% |
| !!! | AAGGATTTTAAAAGACTTTT+TGG | - | chr2_4:5847442-5847461 | Msa0311020:intron | 20.0% |
| !! | TTTGGTATAGAAAAATCTTA+AGG | - | chr2_4:5847460-5847479 | Msa0311020:intron | 20.0% |
| !!! | ATAGATTTCAATGGATTATT+TGG | - | chr2_4:5847931-5847950 | Msa0311020:intron | 20.0% |
| !! | ACAATGAAAGAACATATAAT+GGG | + | chr2_4:5848047-5848066 | None:intergenic | 20.0% |
| !! | AACAATGAAAGAACATATAA+TGG | + | chr2_4:5848048-5848067 | None:intergenic | 20.0% |
| !!! | ACACCAACTAATTTTTATAA+AGG | - | chr2_4:5848562-5848581 | Msa0311020:intron | 20.0% |
| !! | ACACCTTTATAAAAATTAGT+TGG | + | chr2_4:5848568-5848587 | None:intergenic | 20.0% |
| !! | AAAATACAAAATTACAAGAG+TGG | + | chr2_4:5848906-5848925 | None:intergenic | 20.0% |
| !!! | CTTGTAATTTTGTATTTTTG+TGG | - | chr2_4:5848908-5848927 | Msa0311020:intron | 20.0% |
| !! | GTAATTAAGAAATGATTAGT+TGG | + | chr2_4:5849425-5849444 | None:intergenic | 20.0% |
| !!! | AAATGTTTCTAATGACTTAA+CGG | + | chr2_4:5849901-5849920 | None:intergenic | 20.0% |
| !!! | ATGAGATTTTACTTAAAACT+CGG | + | chr2_4:5850020-5850039 | None:intergenic | 20.0% |
| !!! | TTTTTTGGAAAAATGTAACA+TGG | + | chr2_4:5850180-5850199 | None:intergenic | 20.0% |
| !!! | GTCAGGATTTAATTTTTTTT+TGG | + | chr2_4:5850195-5850214 | None:intergenic | 20.0% |
| !!! | CTTCTTTGATTTCATAATAA+TGG | - | chr2_4:5850764-5850783 | Msa0311020:intron | 20.0% |
| !!! | TGTTTTTTTAACTAAACTGA+TGG | - | chr2_4:5851206-5851225 | Msa0311020:CDS | 20.0% |
| !!! | ATTGGATTTTATAATTGACA+CGG | - | chr2_4:5845169-5845188 | Msa0311020:CDS | 20.0% |
| ! | GAACATTTGAATTGATATGA+AGG | + | chr2_4:5844032-5844051 | None:intergenic | 25.0% |
| ! | TGAATTTATGTATGACTTTC+TGG | - | chr2_4:5844067-5844086 | Msa0311020:CDS | 25.0% |
| ! | AAATCCTGACAATATGATAA+TGG | - | chr2_4:5844117-5844136 | Msa0311020:CDS | 25.0% |
| ! | TATGTTAAAATTACACACTG+TGG | - | chr2_4:5844173-5844192 | Msa0311020:CDS | 25.0% |
| ! | TTGTTATGCTGATGTAATTA+TGG | - | chr2_4:5844199-5844218 | Msa0311020:CDS | 25.0% |
| ! | AAAGAAAAACACAGATAAGT+AGG | + | chr2_4:5844323-5844342 | None:intergenic | 25.0% |
| ! | TATGATGGTACAATTACAAA+AGG | - | chr2_4:5844529-5844548 | Msa0311020:intron | 25.0% |
| ! | CTTCAATTGTAGTAAATGAA+AGG | - | chr2_4:5844563-5844582 | Msa0311020:intron | 25.0% |
| ! | ATGAAAGGTAAACTTAATAG+AGG | - | chr2_4:5844578-5844597 | Msa0311020:intron | 25.0% |
| ! | TGAAAGGTAAACTTAATAGA+GGG | - | chr2_4:5844579-5844598 | Msa0311020:intron | 25.0% |
| !! | CTTCTTTGATTTCATAATGA+TGG | - | chr2_4:5844676-5844695 | Msa0311020:CDS | 25.0% |
| ! | GATTAGATGAAACAACAAAT+TGG | + | chr2_4:5845002-5845021 | None:intergenic | 25.0% |
| ! | ATGCAACATTACCTAAATTA+AGG | + | chr2_4:5845298-5845317 | None:intergenic | 25.0% |
| ! | TGAATGAAGGATATTATTTC+GGG | + | chr2_4:5845374-5845393 | None:intergenic | 25.0% |
| !! | ATATAGAACTGATTCCAATT+GGG | - | chr2_4:5845495-5845514 | Msa0311020:intron | 25.0% |
| ! | TAAATAAGGACGTGAAATAT+CGG | - | chr2_4:5845546-5845565 | Msa0311020:intron | 25.0% |
| ! | GAGAAATATGAAGTTAGAAA+TGG | - | chr2_4:5845607-5845626 | Msa0311020:intron | 25.0% |
| ! | AATATGAAGTTAGAAATGGA+AGG | - | chr2_4:5845611-5845630 | Msa0311020:intron | 25.0% |
| !! | AAATTTGAGATCTCTATATC+TGG | + | chr2_4:5845700-5845719 | None:intergenic | 25.0% |
| !! | TCATTTAATTTAGACGAGTT+CGG | - | chr2_4:5845789-5845808 | Msa0311020:intron | 25.0% |
| !!! | TATCTTATTTCTAGTATACC+GGG | - | chr2_4:5846010-5846029 | Msa0311020:CDS | 25.0% |
| !! | GTTTTATCTTCCATCATTAT+TGG | + | chr2_4:5846065-5846084 | None:intergenic | 25.0% |
| !!! | GAAAAATGAAGTTAAGTTGA+TGG | + | chr2_4:5846087-5846106 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAGTCACTTAGG+TGG | - | chr2_4:5846270-5846289 | Msa0311020:intron | 25.0% |
| !!! | GTCAAATAGTTGTTGATTTT+TGG | - | chr2_4:5846373-5846392 | Msa0311020:intron | 25.0% |
| !! | TATAATTCCACCAAATGTTT+TGG | - | chr2_4:5846434-5846453 | Msa0311020:intron | 25.0% |
| ! | TGAACAACATAAGTTGTAAA+GGG | + | chr2_4:5846517-5846536 | None:intergenic | 25.0% |
| ! | TTGAACAACATAAGTTGTAA+AGG | + | chr2_4:5846518-5846537 | None:intergenic | 25.0% |
| ! | AAAAAAAATGCATAGCTTCA+CGG | + | chr2_4:5846619-5846638 | None:intergenic | 25.0% |
| !!! | GAAGCTATGCATTTTTTTTA+AGG | - | chr2_4:5846620-5846639 | Msa0311020:intron | 25.0% |
| ! | TCGTTATATACATTGTTGAT+GGG | + | chr2_4:5846768-5846787 | None:intergenic | 25.0% |
| !!! | CAATTTCTTTTTTGTTTTGG+GGG | + | chr2_4:5846920-5846939 | None:intergenic | 25.0% |
| !!! | GCAATTTCTTTTTTGTTTTG+GGG | + | chr2_4:5846921-5846940 | None:intergenic | 25.0% |
| !!! | GAGCAATTTCTTTTTTGTTT+TGG | + | chr2_4:5846923-5846942 | None:intergenic | 25.0% |
| ! | TTAAGATGCATAAATAGAAG+GGG | + | chr2_4:5846991-5847010 | None:intergenic | 25.0% |
| ! | CATTAAGATGCATAAATAGA+AGG | + | chr2_4:5846993-5847012 | None:intergenic | 25.0% |
| ! | CTTCTATTTATGCATCTTAA+TGG | - | chr2_4:5846991-5847010 | Msa0311020:intron | 25.0% |
| ! | AGTGAATTTACTTGACTATT+TGG | + | chr2_4:5847230-5847249 | None:intergenic | 25.0% |
| ! | ACAACTTAAAAATTGTCTCT+TGG | - | chr2_4:5847895-5847914 | Msa0311020:intron | 25.0% |
| !!! | CAATGGATTATTTGGTATAA+TGG | - | chr2_4:5847939-5847958 | Msa0311020:intron | 25.0% |
| !!! | AAAGACTTTTAAGATTTCGA+GGG | + | chr2_4:5849012-5849031 | None:intergenic | 25.0% |
| !!! | AAAAGACTTTTAAGATTTCG+AGG | + | chr2_4:5849013-5849032 | None:intergenic | 25.0% |
| !!! | GAGATTTTAAAAGACTATTC+TGG | + | chr2_4:5849091-5849110 | None:intergenic | 25.0% |
| !! | CAACTTTCTCTTTATTGTTT+TGG | + | chr2_4:5849154-5849173 | None:intergenic | 25.0% |
| !!! | TCTTTTTTGTTTGTTTGAGA+GGG | + | chr2_4:5849277-5849296 | None:intergenic | 25.0% |
| ! | AAATTCAGCAACAAAATACA+AGG | + | chr2_4:5849490-5849509 | None:intergenic | 25.0% |
| !!! | TTGCTGAATTTTTGTTTTGT+CGG | - | chr2_4:5849499-5849518 | Msa0311020:intron | 25.0% |
| !! | CTATAGCTATGATATTGATT+TGG | - | chr2_4:5849553-5849572 | Msa0311020:intron | 25.0% |
| ! | ACAAATTATGGATTTATGCA+AGG | + | chr2_4:5849591-5849610 | None:intergenic | 25.0% |
| !! | TTGAATGGAGTAATTCTTTT+AGG | - | chr2_4:5849813-5849832 | Msa0311020:intron | 25.0% |
| ! | TATATATACTGTCAGTGTAA+AGG | - | chr2_4:5849848-5849867 | Msa0311020:intron | 25.0% |
| ! | ATATATACTGTCAGTGTAAA+GGG | - | chr2_4:5849849-5849868 | Msa0311020:intron | 25.0% |
| ! | ATGCATACATTCTTATATGT+GGG | + | chr2_4:5850139-5850158 | None:intergenic | 25.0% |
| ! | AATGCATACATTCTTATATG+TGG | + | chr2_4:5850140-5850159 | None:intergenic | 25.0% |
| ! | AAATCCTGACAATATGATAA+TGG | - | chr2_4:5844117-5844136 | Msa0311020:CDS | 25.0% |
| ! | TATGTTAAAATTACACACTG+TGG | - | chr2_4:5844173-5844192 | Msa0311020:CDS | 25.0% |
| !! | TTTGTTATGCTGATGTAATT+TGG | - | chr2_4:5844198-5844217 | Msa0311020:CDS | 25.0% |
| ! | TTGTTATGCTGATGTAATTT+GGG | - | chr2_4:5850287-5850306 | Msa0311020:CDS | 25.0% |
| ! | AAAGAAAAACACAGATAAGT+AGG | + | chr2_4:5844323-5844342 | None:intergenic | 25.0% |
| ! | ATCATAATCAACACCATTAA+AGG | + | chr2_4:5850603-5850622 | None:intergenic | 25.0% |
| !!! | TTTAATGGTGTTGATTATGA+TGG | - | chr2_4:5850602-5850621 | Msa0311020:intron | 25.0% |
| ! | TATGATGGTACAATTACAAA+AGG | - | chr2_4:5844529-5844548 | Msa0311020:intron | 25.0% |
| ! | TGAAAGGTAAACTTAATAGA+TGG | - | chr2_4:5844579-5844598 | Msa0311020:intron | 25.0% |
| ! | TAATAAATTTCAGCAAGAGA+AGG | + | chr2_4:5850729-5850748 | None:intergenic | 25.0% |
| !! | CTTTGATTTCATAATAATGG+AGG | - | chr2_4:5850767-5850786 | Msa0311020:intron | 25.0% |
| ! | GATTAGATGAAACAACAAAT+TGG | + | chr2_4:5845002-5845021 | None:intergenic | 25.0% |
| !! | AAATAGAACTGATTCCAATT+GGG | - | chr2_4:5851583-5851602 | Msa0311020:intron | 25.0% |
| ! | TAAATAAGGACGTGAAATAT+CGG | - | chr2_4:5845546-5845565 | Msa0311020:intron | 25.0% |
| ! | ATTTCTCTAATTCTACTTGA+GGG | + | chr2_4:5851682-5851701 | None:intergenic | 25.0% |
| ! | TATTTCTCTAATTCTACTTG+AGG | + | chr2_4:5851683-5851702 | None:intergenic | 25.0% |
| !! | TTTTGAATCATCTCTATATC+TGG | + | chr2_4:5851800-5851819 | None:intergenic | 25.0% |
| TATCTATACTGTCGATGTAA+AGG | - | chr2_4:5843808-5843827 | Msa0311020:three_prime_UTR | 30.0% | |
| ATCTATACTGTCGATGTAAA+GGG | - | chr2_4:5843809-5843828 | Msa0311020:three_prime_UTR | 30.0% | |
| ATCACCATTATCATATTGTC+AGG | + | chr2_4:5844124-5844143 | None:intergenic | 30.0% | |
| !! | TATGATAATGGTGATTGCTA+AGG | - | chr2_4:5844129-5844148 | Msa0311020:CDS | 30.0% |
| !! | ATGATAATGGTGATTGCTAA+GGG | - | chr2_4:5844130-5844149 | Msa0311020:CDS | 30.0% |
| ATTATGGCAAGGAATAAACA+TGG | - | chr2_4:5844215-5844234 | Msa0311020:intron | 30.0% | |
| TTATGGCAAGGAATAAACAT+GGG | - | chr2_4:5844216-5844235 | Msa0311020:intron | 30.0% | |
| ! | TAAAAGCTATCCTTTAGCTT+CGG | - | chr2_4:5844769-5844788 | Msa0311020:CDS | 30.0% |
| TTCATATTATGTCGCATCAT+GGG | + | chr2_4:5844833-5844852 | None:intergenic | 30.0% | |
| ATTCATATTATGTCGCATCA+TGG | + | chr2_4:5844834-5844853 | None:intergenic | 30.0% | |
| GTCATATGGCAGTAAAATTT+GGG | - | chr2_4:5844896-5844915 | Msa0311020:intron | 30.0% | |
| ATCTAATCAAGAAGAGATGA+GGG | - | chr2_4:5845014-5845033 | Msa0311020:intron | 30.0% | |
| ! | AAAACAGAAGTACATGTCAT+TGG | + | chr2_4:5845103-5845122 | None:intergenic | 30.0% |
| ! | TTTTATAATTGACACGGCAT+CGG | - | chr2_4:5845175-5845194 | Msa0311020:CDS | 30.0% |
| ! | TTGAAGTATAGAAGTTTTGC+TGG | - | chr2_4:5845318-5845337 | Msa0311020:intron | 30.0% |
| TACAAAAGAAATACAGGAGA+TGG | - | chr2_4:5845439-5845458 | Msa0311020:CDS | 30.0% | |
| TTGGAATCAGTTCTATATCT+GGG | + | chr2_4:5845493-5845512 | None:intergenic | 30.0% | |
| ATTGGAATCAGTTCTATATC+TGG | + | chr2_4:5845494-5845513 | None:intergenic | 30.0% | |
| ! | GATATAGAACTGATTCCAAT+TGG | - | chr2_4:5845494-5845513 | Msa0311020:intron | 30.0% |
| ! | ATTTCTCTAATTCGACTTGA+GGG | + | chr2_4:5845594-5845613 | None:intergenic | 30.0% |
| ! | TATTTCTCTAATTCGACTTG+AGG | + | chr2_4:5845595-5845614 | None:intergenic | 30.0% |
| TCTATATCTGGCAATCATTA+TGG | + | chr2_4:5845688-5845707 | None:intergenic | 30.0% | |
| TTAGGTTTGTAGTAGTCTAA+TGG | - | chr2_4:5845874-5845893 | Msa0311020:intron | 30.0% | |
| !! | ATCTTATTTCTAGTATACCG+GGG | - | chr2_4:5846011-5846030 | Msa0311020:CDS | 30.0% |
| AATAAGTGAAGTCTTGATCA+TGG | - | chr2_4:5846130-5846149 | Msa0311020:intron | 30.0% | |
| GAACAACATAAGTTGTAAAG+GGG | + | chr2_4:5846516-5846535 | None:intergenic | 30.0% | |
| CTCGTTATATACATTGTTGA+TGG | + | chr2_4:5846769-5846788 | None:intergenic | 30.0% | |
| ACAATGTATATAACGAGTTC+AGG | - | chr2_4:5846772-5846791 | Msa0311020:intron | 30.0% | |
| ATTGCTCATCAAATTGACAA+AGG | - | chr2_4:5846936-5846955 | Msa0311020:intron | 30.0% | |
| TGAACTGCATTGCTTTAATT+TGG | - | chr2_4:5847131-5847150 | Msa0311020:intron | 30.0% | |
| AACAGCTAAAATATGTCGTT+CGG | + | chr2_4:5847188-5847207 | None:intergenic | 30.0% | |
| AAACCATCTTAACCTAATGT+AGG | + | chr2_4:5847330-5847349 | None:intergenic | 30.0% | |
| ! | CATTAGGTTAAGATGGTTTT+AGG | - | chr2_4:5847331-5847350 | Msa0311020:intron | 30.0% |
| ! | TAGTTACTTTAGTCTCTGAA+TGG | - | chr2_4:5847522-5847541 | Msa0311020:intron | 30.0% |
| ! | AGACTTTGTTGGTCAATTTT+AGG | - | chr2_4:5847605-5847624 | Msa0311020:intron | 30.0% |
| TTTGCAATTTATCTGCATTC+AGG | - | chr2_4:5847728-5847747 | Msa0311020:intron | 30.0% | |
| TTGCAATTTATCTGCATTCA+GGG | - | chr2_4:5847729-5847748 | Msa0311020:intron | 30.0% | |
| TCTCCCATTAGAAATAATTC+CGG | - | chr2_4:5847797-5847816 | Msa0311020:intron | 30.0% | |
| AAATCCTAATTGAATACCAC+CGG | + | chr2_4:5847819-5847838 | None:intergenic | 30.0% | |
| ! | GATTGAATACCACTAGATTT+TGG | + | chr2_4:5847864-5847883 | None:intergenic | 30.0% |
| TAAACATGTAAGAACATGCA+AGG | + | chr2_4:5848241-5848260 | None:intergenic | 30.0% | |
| ! | CTAGAAGACACATTTTATGA+AGG | - | chr2_4:5848500-5848519 | Msa0311020:intron | 30.0% |
| !! | TGTGTCAATACCTACTTTTA+GGG | + | chr2_4:5849127-5849146 | None:intergenic | 30.0% |
| !!! | CTCTTTTTTGTTTGTTTGAG+AGG | + | chr2_4:5849278-5849297 | None:intergenic | 30.0% |
| ! | GAGTTGATTCATTCATTGTT+TGG | + | chr2_4:5849391-5849410 | None:intergenic | 30.0% |
| !! | CTCATTTTCCTTTTGTTTCA+AGG | - | chr2_4:5850035-5850054 | Msa0311020:intron | 30.0% |
| ATCACCATTATCATATTGTC+AGG | + | chr2_4:5844124-5844143 | None:intergenic | 30.0% | |
| !! | TATGATAATGGTGATTGCTA+AGG | - | chr2_4:5844129-5844148 | Msa0311020:CDS | 30.0% |
| !! | ATGATAATGGTGATTGCTAA+GGG | - | chr2_4:5844130-5844149 | Msa0311020:CDS | 30.0% |
| ATTAGAAGTTCATTGTGTGA+AGG | - | chr2_4:5850565-5850584 | Msa0311020:intron | 30.0% | |
| TTAGAAGTTCATTGTGTGAA+GGG | - | chr2_4:5850566-5850585 | Msa0311020:intron | 30.0% | |
| TTACCTTTCATGTACTACAA+TGG | + | chr2_4:5850657-5850676 | None:intergenic | 30.0% | |
| TTCATATTATGTCGCATCAT+GGG | + | chr2_4:5844833-5844852 | None:intergenic | 30.0% | |
| ATTCATATTATGTCGCATCA+TGG | + | chr2_4:5844834-5844853 | None:intergenic | 30.0% | |
| GTCATATGGCAGTAAAATTT+GGG | - | chr2_4:5844896-5844915 | Msa0311020:intron | 30.0% | |
| ATCTAATCAAGAAGAGATGA+GGG | - | chr2_4:5845014-5845033 | Msa0311020:intron | 30.0% | |
| AGAAAATGCTATGGTATAGA+TGG | + | chr2_4:5845055-5845074 | None:intergenic | 30.0% | |
| ATGGTTTGAAGAAAATGCTA+TGG | + | chr2_4:5851153-5851172 | None:intergenic | 30.0% | |
| ! | TTTTATAATTGACACGGCAT+CGG | - | chr2_4:5845175-5845194 | Msa0311020:CDS | 30.0% |
| ATGCAACATTACCTAAGTTA+AGG | + | chr2_4:5851386-5851405 | None:intergenic | 30.0% | |
| TGAATGAAGGATATTACTTC+TGG | + | chr2_4:5851462-5851481 | None:intergenic | 30.0% | |
| TACAAAAGAAATACAGGAGA+TGG | - | chr2_4:5845439-5845458 | Msa0311020:CDS | 30.0% | |
| ! | TTGGAATCAGTTCTATTTCT+GGG | + | chr2_4:5851581-5851600 | None:intergenic | 30.0% |
| ATTGGAATCAGTTCTATTTC+TGG | + | chr2_4:5851582-5851601 | None:intergenic | 30.0% | |
| ! | GAAATAGAACTGATTCCAAT+TGG | - | chr2_4:5851582-5851601 | Msa0311020:intron | 30.0% |
| !! | ATGAAGTTGATTCTGAAGTT+AGG | - | chr2_4:5851702-5851721 | Msa0311020:intron | 30.0% |
| CTGGTGTGTAATATCTAAAA+AGG | + | chr2_4:5851741-5851760 | None:intergenic | 30.0% | |
| TCTATATCTGGCAATCATTA+TGG | + | chr2_4:5845688-5845707 | None:intergenic | 30.0% | |
| !! | AAGAGCTTTATTTGCATTAC+TGG | + | chr2_4:5851836-5851855 | None:intergenic | 30.0% |
| ! | CAGAATGATGCAACTCTTTT+AGG | - | chr2_4:5843777-5843796 | Msa0311020:three_prime_UTR | 35.0% |
| TAGAAGCGGTTATGATAAAG+CGG | + | chr2_4:5843861-5843880 | None:intergenic | 35.0% | |
| CTGCAATAACTAGTACCTTA+CGG | + | chr2_4:5843990-5844009 | None:intergenic | 35.0% | |
| ATGCTGATGTAATTATGGCA+AGG | - | chr2_4:5844204-5844223 | Msa0311020:CDS | 35.0% | |
| TATGGCAAGGAATAAACATG+GGG | - | chr2_4:5844217-5844236 | Msa0311020:intron | 35.0% | |
| ACTAGAAATTCATTGTGCCA+AGG | - | chr2_4:5844477-5844496 | Msa0311020:intron | 35.0% | |
| CTAGAAATTCATTGTGCCAA+GGG | - | chr2_4:5844478-5844497 | Msa0311020:intron | 35.0% | |
| GATGGTACAATTACAAAAGG+AGG | - | chr2_4:5844532-5844551 | Msa0311020:intron | 35.0% | |
| !! | ATATTTGGTCTTGCATATGC+AGG | - | chr2_4:5844729-5844748 | Msa0311020:CDS | 35.0% |
| ! | GAAGCTAAAGGATAGCTTTT+AGG | + | chr2_4:5844770-5844789 | None:intergenic | 35.0% |
| CGACATAATATGAATCAACC+TGG | - | chr2_4:5844839-5844858 | Msa0311020:CDS | 35.0% | |
| GGTCATATGGCAGTAAAATT+TGG | - | chr2_4:5844895-5844914 | Msa0311020:intron | 35.0% | |
| TATGGCAGTAAAATTTGGGA+AGG | - | chr2_4:5844900-5844919 | Msa0311020:intron | 35.0% | |
| !! | GTAAAATTTGGGAAGGCATT+TGG | - | chr2_4:5844907-5844926 | Msa0311020:intron | 35.0% |
| CACTAGTATGTCAAAGAAAG+AGG | - | chr2_4:5844951-5844970 | Msa0311020:intron | 35.0% | |
| TAGTATGTCAAAGAAAGAGG+AGG | - | chr2_4:5844954-5844973 | Msa0311020:intron | 35.0% | |
| CATCTAATCAAGAAGAGATG+AGG | - | chr2_4:5845013-5845032 | Msa0311020:intron | 35.0% | |
| ATGGTTCGAAGAAAATGCTA+TGG | + | chr2_4:5845064-5845083 | None:intergenic | 35.0% | |
| TTTATAATTGACACGGCATC+GGG | - | chr2_4:5845176-5845195 | Msa0311020:CDS | 35.0% | |
| AGTGACATGTAAGGATCAAA+CGG | + | chr2_4:5845209-5845228 | None:intergenic | 35.0% | |
| ATCTTCAGAAGTGACATGTA+AGG | + | chr2_4:5845218-5845237 | None:intergenic | 35.0% | |
| ! | ATGTCACTTCTGAAGATATC+TGG | - | chr2_4:5845221-5845240 | Msa0311020:CDS | 35.0% |
| TACCTAAATTAAGGCTTGCA+GGG | + | chr2_4:5845289-5845308 | None:intergenic | 35.0% | |
| TTACCTAAATTAAGGCTTGC+AGG | + | chr2_4:5845290-5845309 | None:intergenic | 35.0% | |
| TTCTGCAAACAGATGAATGA+AGG | + | chr2_4:5845387-5845406 | None:intergenic | 35.0% | |
| AGGTGGTACAAAAGAAATAC+AGG | - | chr2_4:5845433-5845452 | Msa0311020:CDS | 35.0% | |
| CTGGTGTGTAATATCCTAAA+AGG | + | chr2_4:5845641-5845660 | None:intergenic | 35.0% | |
| ACCAGCATAGAAGATAAAGA+AGG | + | chr2_4:5845987-5846006 | None:intergenic | 35.0% | |
| !! | TCATAACCTCATCGATTTGA+TGG | + | chr2_4:5846179-5846198 | None:intergenic | 35.0% |
| ! | AGAGAGTGTACCAAAACATT+TGG | + | chr2_4:5846447-5846466 | None:intergenic | 35.0% |
| GAAAGAAGAGGAAGTAGATT+TGG | + | chr2_4:5846473-5846492 | None:intergenic | 35.0% | |
| TCTACACATGCAAAGCAAAT+TGG | + | chr2_4:5846826-5846845 | None:intergenic | 35.0% | |
| TGCTTTGCATGTGTAGATTA+TGG | - | chr2_4:5846829-5846848 | Msa0311020:intron | 35.0% | |
| ! | GCAATTTTATAGTGCACAAG+TGG | + | chr2_4:5846891-5846910 | None:intergenic | 35.0% |
| !!! | TTCTTTTTTGTTTTGGGGGA+GGG | + | chr2_4:5846916-5846935 | None:intergenic | 35.0% |
| !!! | TTTCTTTTTTGTTTTGGGGG+AGG | + | chr2_4:5846917-5846936 | None:intergenic | 35.0% |
| TAAAGCAATGCAGTTCACAT+TGG | + | chr2_4:5847128-5847147 | None:intergenic | 35.0% | |
| ATAACTCACTTGACAAACGT+TGG | + | chr2_4:5847306-5847325 | None:intergenic | 35.0% | |
| AAGTGAGTTATGCCTACATT+AGG | - | chr2_4:5847315-5847334 | Msa0311020:intron | 35.0% | |
| ATGCCTACATTAGGTTAAGA+TGG | - | chr2_4:5847324-5847343 | Msa0311020:intron | 35.0% | |
| GACAACGATAGATGTGTATT+GGG | - | chr2_4:5847408-5847427 | Msa0311020:intron | 35.0% | |
| TTGCAATTTCTCTGCATTCA+GGG | + | chr2_4:5847569-5847588 | None:intergenic | 35.0% | |
| TTTGCAATTTCTCTGCATTC+AGG | + | chr2_4:5847570-5847589 | None:intergenic | 35.0% | |
| ACCAACAAAGTCTACATTCA+GGG | + | chr2_4:5847598-5847617 | None:intergenic | 35.0% | |
| ACTAATAGAGCCTACATTCA+GGG | - | chr2_4:5847637-5847656 | Msa0311020:intron | 35.0% | |
| TCAATTTAGTCCCTGAATGT+AGG | + | chr2_4:5847650-5847669 | None:intergenic | 35.0% | |
| TCAGGGACTAAATTGACTAA+CGG | - | chr2_4:5847654-5847673 | Msa0311020:intron | 35.0% | |
| TGACTAACAAGTCTACATTC+AGG | - | chr2_4:5847699-5847718 | Msa0311020:intron | 35.0% | |
| GACTAACAAGTCTACATTCA+GGG | - | chr2_4:5847700-5847719 | Msa0311020:intron | 35.0% | |
| ! | TGACGTTTCCTTTTCAATTC+AGG | - | chr2_4:5847759-5847778 | Msa0311020:intron | 35.0% |
| ! | GACGTTTCCTTTTCAATTCA+GGG | - | chr2_4:5847760-5847779 | Msa0311020:intron | 35.0% |
| CTTTAGTCCCTGAATTGAAA+AGG | + | chr2_4:5847770-5847789 | None:intergenic | 35.0% | |
| !! | CCACCGGAATTATTTCTAAT+GGG | + | chr2_4:5847803-5847822 | None:intergenic | 35.0% |
| !! | ACCACCGGAATTATTTCTAA+TGG | + | chr2_4:5847804-5847823 | None:intergenic | 35.0% |
| AATTCCGGTGGTATTCAATT+AGG | - | chr2_4:5847812-5847831 | Msa0311020:intron | 35.0% | |
| ! | TGAATACCACTAGATTTTGG+TGG | + | chr2_4:5847861-5847880 | None:intergenic | 35.0% |
| GGTTGCTAAAAGACACTTTA+TGG | - | chr2_4:5848637-5848656 | Msa0311020:intron | 35.0% | |
| CTAATACATCCCCTAAAAGT+AGG | - | chr2_4:5849114-5849133 | Msa0311020:intron | 35.0% | |
| !! | GTGTCAATACCTACTTTTAG+GGG | + | chr2_4:5849126-5849145 | None:intergenic | 35.0% |
| !! | CTGTGTCAATACCTACTTTT+AGG | + | chr2_4:5849128-5849147 | None:intergenic | 35.0% |
| ! | GTTTTGTGTCTAAGTGCAAA+GGG | + | chr2_4:5849238-5849257 | None:intergenic | 35.0% |
| ! | TGTTTTGTGTCTAAGTGCAA+AGG | + | chr2_4:5849239-5849258 | None:intergenic | 35.0% |
| GATTCATTCATTGTTTGGCA+AGG | + | chr2_4:5849386-5849405 | None:intergenic | 35.0% | |
| TACCTGCGATTGAATTTGTA+AGG | + | chr2_4:5849763-5849782 | None:intergenic | 35.0% | |
| ! | TTTAAAGTCACACACATGCT+TGG | - | chr2_4:5849940-5849959 | Msa0311020:intron | 35.0% |
| ! | CTGCAATAACCAGTAACTTT+TGG | + | chr2_4:5850072-5850091 | None:intergenic | 35.0% |
| ! | TGAAAGTGTAGCATCAAACT+AGG | + | chr2_4:5850097-5850116 | None:intergenic | 35.0% |
| ! | TGCATTTATGTATGACTTGC+TGG | - | chr2_4:5850154-5850173 | Msa0311020:CDS | 35.0% |
| ATTTGGGCAAGGAATAAACA+TGG | - | chr2_4:5850303-5850322 | Msa0311020:intron | 35.0% | |
| TTTGGGCAAGGAATAAACAT+GGG | - | chr2_4:5850304-5850323 | Msa0311020:intron | 35.0% | |
| TACTTACATCAACTCATGCA+GGG | - | chr2_4:5850520-5850539 | Msa0311020:CDS | 35.0% | |
| GGATCAGTTTACACCTTTAA+TGG | - | chr2_4:5844499-5844518 | Msa0311020:intron | 35.0% | |
| GATGGTACAATTACAAAAGG+AGG | - | chr2_4:5844532-5844551 | Msa0311020:intron | 35.0% | |
| TTCATGTACTACAATGGAAG+TGG | + | chr2_4:5850651-5850670 | None:intergenic | 35.0% | |
| CTTCCATTGTAGTACATGAA+AGG | - | chr2_4:5850651-5850670 | Msa0311020:intron | 35.0% | |
| GGTAAACTTAATAGATGGCT+TGG | - | chr2_4:5850672-5850691 | Msa0311020:intron | 35.0% | |
| ! | ATATATGGTCTTGCATATGC+AGG | - | chr2_4:5850817-5850836 | Msa0311020:intron | 35.0% |
| ! | GAAGCTAAAGGATAGCTTTT+AGG | + | chr2_4:5844770-5844789 | None:intergenic | 35.0% |
| CGACATAATATGAATCAACC+TGG | - | chr2_4:5844839-5844858 | Msa0311020:CDS | 35.0% | |
| GGTCATATGGCAGTAAAATT+TGG | - | chr2_4:5844895-5844914 | Msa0311020:intron | 35.0% | |
| TATGGCAGTAAAATTTGGGA+AGG | - | chr2_4:5844900-5844919 | Msa0311020:intron | 35.0% | |
| !! | GTAAAATTTGGGAAGGCATT+TGG | - | chr2_4:5844907-5844926 | Msa0311020:intron | 35.0% |
| CATCTAATCAAGAAGAGATG+AGG | - | chr2_4:5845013-5845032 | Msa0311020:intron | 35.0% | |
| CAGTATCAGTATTCTCTTCA+TGG | + | chr2_4:5851172-5851191 | None:intergenic | 35.0% | |
| TTTATAATTGACACGGCATC+GGG | - | chr2_4:5845176-5845195 | Msa0311020:CDS | 35.0% | |
| AGTGTCATGTAAGGATCAAA+CGG | + | chr2_4:5851297-5851316 | None:intergenic | 35.0% | |
| !! | ATCTTCAGAAGTGTCATGTA+AGG | + | chr2_4:5851306-5851325 | None:intergenic | 35.0% |
| ! | ATGACACTTCTGAAGATATC+TGG | - | chr2_4:5851309-5851328 | Msa0311020:CDS | 35.0% |
| ! | TCCTTCATTCATCTGTTTTC+AGG | - | chr2_4:5851471-5851490 | Msa0311020:CDS | 35.0% |
| TCCTGAAAACAGATGAATGA+AGG | + | chr2_4:5851475-5851494 | None:intergenic | 35.0% | |
| AGGTGGTACAAAAGAAATAC+AGG | - | chr2_4:5845433-5845452 | Msa0311020:CDS | 35.0% | |
| TCTTGAGAGGGTCATAAATA+AGG | - | chr2_4:5851620-5851639 | Msa0311020:intron | 35.0% | |
| ATGCAAATAAAGCTCTTGAC+AGG | - | chr2_4:5851839-5851858 | Msa0311020:intron | 35.0% | |
| TGCAAATAAAGCTCTTGACA+GGG | - | chr2_4:5851840-5851859 | Msa0311020:intron | 35.0% | |
| !! | ATTTAGACGAGTTTCGAGTT+CGG | - | chr2_4:5851906-5851925 | Msa0311020:intron | 35.0% |
| ATAAATGCTCTTTGAGCTGT+TGG | + | chr2_4:5845846-5845865 | None:intergenic | 35.0% | |
| GTAAGCTAGCATGAAATGTT+TGG | - | chr2_4:5852044-5852063 | Msa0311020:CDS | 35.0% | |
| TGCCTTACAGATTCAATCGA+AGG | - | chr2_4:5843706-5843725 | Msa0311020:three_prime_UTR | 40.0% | |
| CACCTTCGATTGAATCTGTA+AGG | + | chr2_4:5843711-5843730 | None:intergenic | 40.0% | |
| AGTTGCATCATTCTGCAAAG+GGG | + | chr2_4:5843772-5843791 | None:intergenic | 40.0% | |
| GAGTTGCATCATTCTGCAAA+GGG | + | chr2_4:5843773-5843792 | None:intergenic | 40.0% | |
| AGAGTTGCATCATTCTGCAA+AGG | + | chr2_4:5843774-5843793 | None:intergenic | 40.0% | |
| ATCACAAGCAATCATGTGTG+TGG | + | chr2_4:5843887-5843906 | None:intergenic | 40.0% | |
| ACTAGTACCTTACGGTAGTA+AGG | + | chr2_4:5843982-5844001 | None:intergenic | 40.0% | |
| ! | TGAAGGTGTAGCATCAAACT+AGG | + | chr2_4:5844015-5844034 | None:intergenic | 40.0% |
| ! | TTCAAAGTATCCTGTTGTGC+CGG | - | chr2_4:5844241-5844260 | Msa0311020:intron | 40.0% |
| ! | AGCTATTCTTGCTGTGTGTA+TGG | - | chr2_4:5844275-5844294 | Msa0311020:intron | 40.0% |
| TTATCAGACACGAGATTGCT+GGG | - | chr2_4:5844347-5844366 | Msa0311020:CDS | 40.0% | |
| ! | AAAGGTGTAAACTGATCCCT+TGG | + | chr2_4:5844497-5844516 | None:intergenic | 40.0% |
| GGTAAACTTAATAGAGGGCA+TGG | - | chr2_4:5844584-5844603 | Msa0311020:intron | 40.0% | |
| ! | ATTTTACTGCCATATGACCG+AGG | + | chr2_4:5844894-5844913 | None:intergenic | 40.0% |
| ! | AGCATTTTCTTCGAACCATG+AGG | - | chr2_4:5845065-5845084 | Msa0311020:CDS | 40.0% |
| TGGTATCAGTATTCACCTCA+TGG | + | chr2_4:5845083-5845102 | None:intergenic | 40.0% | |
| AGTAATGGTGACTTCTATGC+AGG | - | chr2_4:5845133-5845152 | Msa0311020:CDS | 40.0% | |
| GTGACATGTAAGGATCAAAC+GGG | + | chr2_4:5845208-5845227 | None:intergenic | 40.0% | |
| TCTGAAGATATCTGGTGTTC+TGG | - | chr2_4:5845229-5845248 | Msa0311020:CDS | 40.0% | |
| ! | GGCTGAATTTGACTTCACTT+GGG | + | chr2_4:5845268-5845287 | None:intergenic | 40.0% |
| CAACTCATTCTTTGTACTGC+TGG | - | chr2_4:5845346-5845365 | Msa0311020:intron | 40.0% | |
| TTGACTTCTGTGCTGCAAAT+GGG | - | chr2_4:5845462-5845481 | Msa0311020:intron | 40.0% | |
| GCTTCATTTGAGTACCCAAT+TGG | + | chr2_4:5845512-5845531 | None:intergenic | 40.0% | |
| ACTCAAATGAAGCTCTTGAG+AGG | - | chr2_4:5845519-5845538 | Msa0311020:intron | 40.0% | |
| CTCAAATGAAGCTCTTGAGA+GGG | - | chr2_4:5845520-5845539 | Msa0311020:intron | 40.0% | |
| TCTTGAGAGGGTCGTAAATA+AGG | - | chr2_4:5845532-5845551 | Msa0311020:intron | 40.0% | |
| ! | AAATGGAAGGACTGCCTTTT+AGG | - | chr2_4:5845624-5845643 | Msa0311020:intron | 40.0% |
| TGAACATTTCTCTTTGCTGC+TGG | + | chr2_4:5845660-5845679 | None:intergenic | 40.0% | |
| AGTAATGCAAAGCTCTTGTG+AGG | - | chr2_4:5845729-5845748 | Msa0311020:intron | 40.0% | |
| GTAATGCAAAGCTCTTGTGA+GGG | - | chr2_4:5845730-5845749 | Msa0311020:intron | 40.0% | |
| TCTTGTGAGGGTCATAGATA+TGG | - | chr2_4:5845742-5845761 | Msa0311020:intron | 40.0% | |
| GTAAGCTAGCATGAACTGTT+TGG | - | chr2_4:5845927-5845946 | Msa0311020:intron | 40.0% | |
| GCCTTCTTTATCTTCTATGC+TGG | - | chr2_4:5845983-5846002 | Msa0311020:CDS | 40.0% | |
| AACTGTCCATCAAATCGATG+AGG | - | chr2_4:5846170-5846189 | Msa0311020:intron | 40.0% | |
| GAGTGTACCAAAACATTTGG+TGG | + | chr2_4:5846444-5846463 | None:intergenic | 40.0% | |
| CAACATAAGTTGTAAAGGGG+AGG | + | chr2_4:5846513-5846532 | None:intergenic | 40.0% | |
| AGTTTGTGACTGTGTCTCTA+AGG | + | chr2_4:5846541-5846560 | None:intergenic | 40.0% | |
| AAAATGCATAGCTTCACGGA+TGG | + | chr2_4:5846615-5846634 | None:intergenic | 40.0% | |
| TGCATGATTCTTGCATTTGC+TGG | - | chr2_4:5846728-5846747 | Msa0311020:intron | 40.0% | |
| ! | GATTCTTGCATTTGCTGGAA+TGG | - | chr2_4:5846733-5846752 | Msa0311020:intron | 40.0% |
| GTATATAACGAGTTCAGGTC+AGG | - | chr2_4:5846777-5846796 | Msa0311020:intron | 40.0% | |
| AGTTCAGGTCAGGTTTCTAT+GGG | - | chr2_4:5846787-5846806 | Msa0311020:intron | 40.0% | |
| AGGTTTCTATGGGTATGGTT+TGG | - | chr2_4:5846797-5846816 | Msa0311020:intron | 40.0% | |
| !!! | TCTTTTTTGTTTTGGGGGAG+GGG | + | chr2_4:5846915-5846934 | None:intergenic | 40.0% |
| TGACAAACGTTGGAGTACAA+AGG | + | chr2_4:5847296-5847315 | None:intergenic | 40.0% | |
| GGACAACGATAGATGTGTAT+TGG | - | chr2_4:5847407-5847426 | Msa0311020:intron | 40.0% | |
| ACGATAGATGTGTATTGGGT+TGG | - | chr2_4:5847412-5847431 | Msa0311020:intron | 40.0% | |
| CGATAGATGTGTATTGGGTT+GGG | - | chr2_4:5847413-5847432 | Msa0311020:intron | 40.0% | |
| !! | GTATTGGGTTGGGATTTAGA+AGG | - | chr2_4:5847423-5847442 | Msa0311020:intron | 40.0% |
| TCCCTGAATGTAGACTTTGT+TGG | - | chr2_4:5847594-5847613 | Msa0311020:intron | 40.0% | |
| GACCAACAAAGTCTACATTC+AGG | + | chr2_4:5847599-5847618 | None:intergenic | 40.0% | |
| GACTAATAGAGCCTACATTC+AGG | - | chr2_4:5847636-5847655 | Msa0311020:intron | 40.0% | |
| CCCATTAGAAATAATTCCGG+TGG | - | chr2_4:5847800-5847819 | Msa0311020:intron | 40.0% | |
| AAGAGTCCACCAAAATCTAG+TGG | - | chr2_4:5847852-5847871 | Msa0311020:intron | 40.0% | |
| ! | ACATGTTGATGAGTGAAGTG+GGG | + | chr2_4:5848073-5848092 | None:intergenic | 40.0% |
| ! | CACATGTTGATGAGTGAAGT+GGG | + | chr2_4:5848074-5848093 | None:intergenic | 40.0% |
| ! | ACACATGTTGATGAGTGAAG+TGG | + | chr2_4:5848075-5848094 | None:intergenic | 40.0% |
| ! | TAGTTCTACTAACTCCGTCA+CGG | - | chr2_4:5849336-5849355 | Msa0311020:intron | 40.0% |
| !! | GCTATGAGTTCTGAAAGTGT+TGG | - | chr2_4:5849688-5849707 | Msa0311020:intron | 40.0% |
| ATTCAACAAAGCAGAGTGAG+AGG | + | chr2_4:5849799-5849818 | None:intergenic | 40.0% | |
| ! | TCTCACTCTGCTTTGTTGAA+TGG | - | chr2_4:5849798-5849817 | Msa0311020:intron | 40.0% |
| CAAGGTTGCCTTGAAACAAA+AGG | + | chr2_4:5850046-5850065 | None:intergenic | 40.0% | |
| ACCTTGCTACCAAAAGTTAC+TGG | - | chr2_4:5850060-5850079 | Msa0311020:intron | 40.0% | |
| !! | ACCAGTAACTTTTGGTAGCA+AGG | + | chr2_4:5850064-5850083 | None:intergenic | 40.0% |
| ATGCTGATGTAATTTGGGCA+AGG | - | chr2_4:5850292-5850311 | Msa0311020:CDS | 40.0% | |
| TTGGGCAAGGAATAAACATG+GGG | - | chr2_4:5850305-5850324 | Msa0311020:intron | 40.0% | |
| ! | TTCAAAGTATCCTGTTGTGC+CGG | - | chr2_4:5844241-5844260 | Msa0311020:intron | 40.0% |
| ! | AGCTATTCTTGCTGTGTGTA+TGG | - | chr2_4:5844275-5844294 | Msa0311020:intron | 40.0% |
| TTATCAGACACGAGATTGCT+GGG | - | chr2_4:5844347-5844366 | Msa0311020:CDS | 40.0% | |
| GTACTTACATCAACTCATGC+AGG | - | chr2_4:5850519-5850538 | Msa0311020:CDS | 40.0% | |
| AATCAACCTGGTAAGTCTCT+TGG | - | chr2_4:5850939-5850958 | Msa0311020:CDS | 40.0% | |
| ! | ATTTTACTGCCATATGACCG+AGG | + | chr2_4:5844894-5844913 | None:intergenic | 40.0% |
| CACGAGCATTTCAAAGAAAG+AGG | - | chr2_4:5851040-5851059 | Msa0311020:intron | 40.0% | |
| GAGCATTTCAAAGAAAGAGG+AGG | - | chr2_4:5851043-5851062 | Msa0311020:intron | 40.0% | |
| GTGTCATGTAAGGATCAAAC+GGG | + | chr2_4:5851296-5851315 | None:intergenic | 40.0% | |
| TCTGAAGATATCTGGTGTTC+TGG | - | chr2_4:5845229-5845248 | Msa0311020:CDS | 40.0% | |
| ! | GGCTGAATTTGACTTCACTT+GGG | + | chr2_4:5845268-5845287 | None:intergenic | 40.0% |
| TACCTAAGTTAAGGCTTGCA+GGG | + | chr2_4:5851377-5851396 | None:intergenic | 40.0% | |
| TTACCTAAGTTAAGGCTTGC+AGG | + | chr2_4:5851378-5851397 | None:intergenic | 40.0% | |
| CAACTCGTTCTTTATATCGC+TGG | - | chr2_4:5851434-5851453 | Msa0311020:intron | 40.0% | |
| GCTTCATTTGAGTACCCAAT+TGG | + | chr2_4:5845512-5845531 | None:intergenic | 40.0% | |
| ACTCAAATGAAGCTCTTGAG+AGG | - | chr2_4:5845519-5845538 | Msa0311020:intron | 40.0% | |
| CTCAAATGAAGCTCTTGAGA+GGG | - | chr2_4:5845520-5845539 | Msa0311020:intron | 40.0% | |
| !! | GTTGATTCTGAAGTTAGGCA+TGG | - | chr2_4:5851707-5851726 | Msa0311020:intron | 40.0% |
| !! | ATTCTGAAGTTAGGCATGGA+AGG | - | chr2_4:5851711-5851730 | Msa0311020:intron | 40.0% |
| TGAACATTTCTCTTTGCTGC+TGG | + | chr2_4:5845660-5845679 | None:intergenic | 40.0% | |
| TCTTGACAGGGTCATAGATA+GGG | - | chr2_4:5851852-5851871 | Msa0311020:intron | 40.0% | |
| TCGGTTTCGAGAACAAACTA+AGG | - | chr2_4:5851925-5851944 | Msa0311020:intron | 40.0% | |
| !! | GCTATGAGTTCTGAAGGTGT+TGG | - | chr2_4:5843636-5843655 | Msa0311020:three_prime_UTR | 45.0% |
| TTGGTGAAGATTGCCTTGCA+TGG | - | chr2_4:5843655-5843674 | Msa0311020:three_prime_UTR | 45.0% | |
| TGGTGAAGATTGCCTTGCAT+GGG | - | chr2_4:5843656-5843675 | Msa0311020:three_prime_UTR | 45.0% | |
| ATTCTGCAAAGGGGAATGAG+AGG | + | chr2_4:5843763-5843782 | None:intergenic | 45.0% | |
| !! | CATGTGTGTGGCTTTAGAAG+CGG | + | chr2_4:5843875-5843894 | None:intergenic | 45.0% |
| AAGGCAACCTTACTACCGTA+AGG | - | chr2_4:5843972-5843991 | Msa0311020:three_prime_UTR | 45.0% | |
| ! | TCAAAGTATCCTGTTGTGCC+GGG | - | chr2_4:5844242-5844261 | Msa0311020:intron | 45.0% |
| GAATAGCTCACAACTTACCC+CGG | + | chr2_4:5844263-5844282 | None:intergenic | 45.0% | |
| CTTATCAGACACGAGATTGC+TGG | - | chr2_4:5844346-5844365 | Msa0311020:CDS | 45.0% | |
| TATCAGACACGAGATTGCTG+GGG | - | chr2_4:5844348-5844367 | Msa0311020:CDS | 45.0% | |
| TCCTAATGTCCAGCGTTTCA+AGG | - | chr2_4:5844387-5844406 | Msa0311020:CDS | 45.0% | |
| ACCTTGAAACGCTGGACATT+AGG | + | chr2_4:5844391-5844410 | None:intergenic | 45.0% | |
| AATGTCCAGCGTTTCAAGGT+TGG | - | chr2_4:5844391-5844410 | Msa0311020:CDS | 45.0% | |
| !! | TTCAAGGTTGGTGACCATGT+TGG | - | chr2_4:5844403-5844422 | Msa0311020:CDS | 45.0% |
| GACTTACATCAACTCGTGCA+GGG | - | chr2_4:5844432-5844451 | Msa0311020:CDS | 45.0% | |
| GTGATTCCAGCACAAAGCAA+AGG | + | chr2_4:5844800-5844819 | None:intergenic | 45.0% | |
| GAATCAACCTGGTAGTCTCT+TGG | - | chr2_4:5844850-5844869 | Msa0311020:CDS | 45.0% | |
| !! | GGCATTTGGTTTGCGTGTAA+CGG | - | chr2_4:5844921-5844940 | Msa0311020:intron | 45.0% |
| GCAGGCGTTAGCTAAAACAT+TGG | - | chr2_4:5845151-5845170 | Msa0311020:CDS | 45.0% | |
| TTCACTTGGGAACCCAACTA+AGG | + | chr2_4:5845255-5845274 | None:intergenic | 45.0% | |
| ! | GGGCTGAATTTGACTTCACT+TGG | + | chr2_4:5845269-5845288 | None:intergenic | 45.0% |
| AGCCCTGCAAGCCTTAATTT+AGG | - | chr2_4:5845284-5845303 | Msa0311020:intron | 45.0% | |
| GCAGAATCAAGAACTGTTGC+CGG | - | chr2_4:5845401-5845420 | Msa0311020:CDS | 45.0% | |
| ! | GTTGACTTCTGTGCTGCAAA+TGG | - | chr2_4:5845461-5845480 | Msa0311020:intron | 45.0% |
| TCGGTTTCGAGAACAAACGA+AGG | - | chr2_4:5845808-5845827 | Msa0311020:intron | 45.0% | |
| TTTCGAGAACAAACGAAGGC+TGG | - | chr2_4:5845812-5845831 | Msa0311020:intron | 45.0% | |
| GGATGCAATCGCCATTCTAT+GGG | - | chr2_4:5846032-5846051 | Msa0311020:intron | 45.0% | |
| GATGCAATCGCCATTCTATG+GGG | - | chr2_4:5846033-5846052 | Msa0311020:intron | 45.0% | |
| !! | TTGGCTTTTGCCCCATAGAA+TGG | + | chr2_4:5846046-5846065 | None:intergenic | 45.0% |
| GGGGCAAAAGCCAATAATGA+TGG | - | chr2_4:5846052-5846071 | Msa0311020:intron | 45.0% | |
| CTAATGTGCACGAGTCACTT+AGG | - | chr2_4:5846232-5846251 | Msa0311020:intron | 45.0% | |
| GGTGAGAGTAAGGAAAGAAG+AGG | + | chr2_4:5846485-5846504 | None:intergenic | 45.0% | |
| AGTTGTAAAGGGGAGGAAGA+AGG | + | chr2_4:5846506-5846525 | None:intergenic | 45.0% | |
| GAGTTCAGGTCAGGTTTCTA+TGG | - | chr2_4:5846786-5846805 | Msa0311020:intron | 45.0% | |
| AGGTCAGGTTTCTATGGGTA+TGG | - | chr2_4:5846792-5846811 | Msa0311020:intron | 45.0% | |
| !!! | TTTTTTGTTTTGGGGGAGGG+GGG | + | chr2_4:5846913-5846932 | None:intergenic | 45.0% |
| !!! | CTTTTTTGTTTTGGGGGAGG+GGG | + | chr2_4:5846914-5846933 | None:intergenic | 45.0% |
| ! | CATGTTGATGAGTGAAGTGG+GGG | + | chr2_4:5848072-5848091 | None:intergenic | 45.0% |
| TTGGTGAAGATTGCCTTGCA+TGG | - | chr2_4:5843655-5843674 | Msa0311020:three_prime_UTR | 45.0% | |
| TGGTGAAGATTGCCTTGCAT+GGG | - | chr2_4:5843656-5843675 | Msa0311020:three_prime_UTR | 45.0% | |
| CGCCTTACAAATTCAATCGC+AGG | - | chr2_4:5849758-5849777 | Msa0311020:intron | 45.0% | |
| ! | TCAAAGTATCCTGTTGTGCC+GGG | - | chr2_4:5844242-5844261 | Msa0311020:intron | 45.0% |
| GAATAGCTCACAACTTACCC+CGG | + | chr2_4:5844263-5844282 | None:intergenic | 45.0% | |
| CTTATCAGACACGAGATTGC+TGG | - | chr2_4:5844346-5844365 | Msa0311020:CDS | 45.0% | |
| TATCAGACACGAGATTGCTG+GGG | - | chr2_4:5844348-5844367 | Msa0311020:CDS | 45.0% | |
| TCCTAATGTCCAGCGTTTCA+AGG | - | chr2_4:5844387-5844406 | Msa0311020:CDS | 45.0% | |
| ACCTTGAAACGCTGGACATT+AGG | + | chr2_4:5844391-5844410 | None:intergenic | 45.0% | |
| AATGTCCAGCGTTTCAAGGT+TGG | - | chr2_4:5844391-5844410 | Msa0311020:CDS | 45.0% | |
| !! | TTCAAGGTTGGTGACCATGT+TGG | - | chr2_4:5844403-5844422 | Msa0311020:CDS | 45.0% |
| TGTAAGTACCCACTCCAACA+TGG | + | chr2_4:5850508-5850527 | None:intergenic | 45.0% | |
| ! | AGCTATCCTTTAGCTTCAGC+AGG | - | chr2_4:5850861-5850880 | Msa0311020:CDS | 45.0% |
| AAAGGACCTGCTGAAGCTAA+AGG | + | chr2_4:5850870-5850889 | None:intergenic | 45.0% | |
| GTGATTCCAGCACAAAGCAA+AGG | + | chr2_4:5844800-5844819 | None:intergenic | 45.0% | |
| !! | GGCATTTGGTTTGCGTGTAA+CGG | - | chr2_4:5844921-5844940 | Msa0311020:intron | 45.0% |
| ! | CAAATTGGTCTGCACCAAGA+AGG | + | chr2_4:5844987-5845006 | None:intergenic | 45.0% |
| ! | ACTGATGGTGACTTCTATGC+AGG | - | chr2_4:5851221-5851240 | Msa0311020:CDS | 45.0% |
| GCAGGCGTTAGCTAAATCAT+TGG | - | chr2_4:5851239-5851258 | Msa0311020:CDS | 45.0% | |
| !! | TCTGGTGTTCTGGTCTTAGT+TGG | - | chr2_4:5851327-5851346 | Msa0311020:CDS | 45.0% |
| !! | CTGGTGTTCTGGTCTTAGTT+GGG | - | chr2_4:5851328-5851347 | Msa0311020:CDS | 45.0% |
| ! | GGGCTGAATTTGACTTCACT+TGG | + | chr2_4:5845269-5845288 | None:intergenic | 45.0% |
| TCAGGATCAAGAACTGTTGC+CGG | - | chr2_4:5851489-5851508 | Msa0311020:CDS | 45.0% | |
| TCGACTTCTGTGCTGCAAAT+GGG | - | chr2_4:5851550-5851569 | Msa0311020:intron | 45.0% | |
| CTCTTGACAGGGTCATAGAT+AGG | - | chr2_4:5851851-5851870 | Msa0311020:intron | 45.0% | |
| !!! | TGTTATTTAAAATAATATTT+GGG | - | chr2_4:5847372-5847391 | Msa0311020:intron | 5.0% |
| !! | AGAAAAATAAAATAAAATAA+AGG | + | chr2_4:5848113-5848132 | None:intergenic | 5.0% |
| !! | TTAAATTGTAAAAAAAAAAA+TGG | - | chr2_4:5849177-5849196 | Msa0311020:intron | 5.0% |
| TGGTGATTGCTAAGGGCTCT+CGG | - | chr2_4:5844137-5844156 | Msa0311020:CDS | 50.0% | |
| ! | CAAAGTATCCTGTTGTGCCG+GGG | - | chr2_4:5844243-5844262 | Msa0311020:intron | 50.0% |
| !! | GTTGGTGACCATGTTGGAGT+GGG | - | chr2_4:5844409-5844428 | Msa0311020:CDS | 50.0% |
| ! | TTGGTGACCATGTTGGAGTG+GGG | - | chr2_4:5844410-5844429 | Msa0311020:CDS | 50.0% |
| TGTAAGTCCCCACTCCAACA+TGG | + | chr2_4:5844420-5844439 | None:intergenic | 50.0% | |
| GGACTTACATCAACTCGTGC+AGG | - | chr2_4:5844431-5844450 | Msa0311020:CDS | 50.0% | |
| ! | AGCTATCCTTTAGCTTCGGC+AGG | - | chr2_4:5844773-5844792 | Msa0311020:CDS | 50.0% |
| AAAGGACCTGCCGAAGCTAA+AGG | + | chr2_4:5844782-5844801 | None:intergenic | 50.0% | |
| AACCTGGTAGTCTCTTGGAG+TGG | - | chr2_4:5844855-5844874 | Msa0311020:CDS | 50.0% | |
| AACCACTCCAAGAGACTACC+AGG | + | chr2_4:5844860-5844879 | None:intergenic | 50.0% | |
| TGGTAGTCTCTTGGAGTGGT+TGG | - | chr2_4:5844859-5844878 | Msa0311020:CDS | 50.0% | |
| !! | TCTCTTGGAGTGGTTGGTCT+TGG | - | chr2_4:5844865-5844884 | Msa0311020:intron | 50.0% |
| !! | TCTGGTGTTCTGGCCTTAGT+TGG | - | chr2_4:5845239-5845258 | Msa0311020:CDS | 50.0% |
| !! | CTGGTGTTCTGGCCTTAGTT+GGG | - | chr2_4:5845240-5845259 | Msa0311020:CDS | 50.0% |
| TGTACCACCTGCAACACTTC+CGG | + | chr2_4:5845423-5845442 | None:intergenic | 50.0% | |
| TAGAATGGCGATTGCATCCC+CGG | + | chr2_4:5846031-5846050 | None:intergenic | 50.0% | |
| GGGATGCAATCGCCATTCTA+TGG | - | chr2_4:5846031-5846050 | Msa0311020:intron | 50.0% | |
| ATGTGCACGAGTCACTTAGG+TGG | - | chr2_4:5846235-5846254 | Msa0311020:intron | 50.0% | |
| GGAGGAAGAAGGTGAGAGTA+AGG | + | chr2_4:5846495-5846514 | None:intergenic | 50.0% | |
| ACTAACGGAGTCTGCATGCA+GGG | - | chr2_4:5847669-5847688 | Msa0311020:intron | 50.0% | |
| GAGTCAGCAAAGAGAAGAGC+TGG | - | chr2_4:5849295-5849314 | Msa0311020:intron | 50.0% | |
| !! | CGCATAGCTTTGTACCGTGA+CGG | + | chr2_4:5849353-5849372 | None:intergenic | 50.0% |
| TGGTGATTGCTAAGGGAGCT+CGG | - | chr2_4:5850225-5850244 | Msa0311020:CDS | 50.0% | |
| ! | CAAAGTATCCTGTTGTGCCG+GGG | - | chr2_4:5844243-5844262 | Msa0311020:intron | 50.0% |
| !! | GTTGGTGACCATGTTGGAGT+GGG | - | chr2_4:5844409-5844428 | Msa0311020:CDS | 50.0% |
| ACCTGGTAAGTCTCTTGGAG+TGG | - | chr2_4:5850944-5850963 | Msa0311020:CDS | 50.0% | |
| ACCACTCCAAGAGACTTACC+AGG | + | chr2_4:5850948-5850967 | None:intergenic | 50.0% | |
| GGTAAGTCTCTTGGAGTGGT+TGG | - | chr2_4:5850948-5850967 | Msa0311020:CDS | 50.0% | |
| !! | TCTCTTGGAGTGGTTGGTCT+TGG | - | chr2_4:5844865-5844884 | Msa0311020:intron | 50.0% |
| AGCCCTGCAAGCCTTAACTT+AGG | - | chr2_4:5851372-5851391 | Msa0311020:intron | 50.0% | |
| TGTACCACCTGCAACACTTC+CGG | + | chr2_4:5845423-5845442 | None:intergenic | 50.0% | |
| ! | GTCGACTTCTGTGCTGCAAA+TGG | - | chr2_4:5851549-5851568 | Msa0311020:intron | 50.0% |
| CATCTCTTGCTGCCCATGCA+AGG | + | chr2_4:5843671-5843690 | None:intergenic | 55.0% | |
| TGGGCAGCAAGAGATGCATC+TGG | - | chr2_4:5843675-5843694 | Msa0311020:three_prime_UTR | 55.0% | |
| GGTGATTGCTAAGGGCTCTC+GGG | - | chr2_4:5844138-5844157 | Msa0311020:CDS | 55.0% | |
| ACAACTTACCCCGGCACAAC+AGG | + | chr2_4:5844254-5844273 | None:intergenic | 55.0% | |
| ACACGAGATTGCTGGGGTTG+TGG | - | chr2_4:5844354-5844373 | Msa0311020:CDS | 55.0% | |
| GATTGCTGGGGTTGTGGCAA+AGG | - | chr2_4:5844360-5844379 | Msa0311020:CDS | 55.0% | |
| GGTCACCAACCTTGAAACGC+TGG | + | chr2_4:5844399-5844418 | None:intergenic | 55.0% | |
| !! | GGTTGGTGACCATGTTGGAG+TGG | - | chr2_4:5844408-5844427 | Msa0311020:CDS | 55.0% |
| GCAGGTCCTTTGCTTTGTGC+TGG | - | chr2_4:5844791-5844810 | Msa0311020:CDS | 55.0% | |
| !! | CTTGGAGTGGTTGGTCTTGG+TGG | - | chr2_4:5844868-5844887 | Msa0311020:intron | 55.0% |
| ! | TCTTGGTGGCCTCGGTCATA+TGG | - | chr2_4:5844882-5844901 | Msa0311020:intron | 55.0% |
| !! | ACTGTTGCCGGAAGTGTTGC+AGG | - | chr2_4:5845413-5845432 | Msa0311020:CDS | 55.0% |
| GACTAACGGAGTCTGCATGC+AGG | - | chr2_4:5847668-5847687 | Msa0311020:intron | 55.0% | |
| CATCTCTTGCTGCCCATGCA+AGG | + | chr2_4:5843671-5843690 | None:intergenic | 55.0% | |
| TGGGCAGCAAGAGATGCATC+TGG | - | chr2_4:5843675-5843694 | Msa0311020:three_prime_UTR | 55.0% | |
| GGTGATTGCTAAGGGAGCTC+GGG | - | chr2_4:5850226-5850245 | Msa0311020:CDS | 55.0% | |
| ACAACTTACCCCGGCACAAC+AGG | + | chr2_4:5844254-5844273 | None:intergenic | 55.0% | |
| ACACGAGATTGCTGGGGTTG+TGG | - | chr2_4:5844354-5844373 | Msa0311020:CDS | 55.0% | |
| GATTGCTGGGGTTGTGGCAA+AGG | - | chr2_4:5844360-5844379 | Msa0311020:CDS | 55.0% | |
| GGTCACCAACCTTGAAACGC+TGG | + | chr2_4:5844399-5844418 | None:intergenic | 55.0% | |
| !! | GGTTGGTGACCATGTTGGAG+TGG | - | chr2_4:5844408-5844427 | Msa0311020:CDS | 55.0% |
| GCAGGTCCTTTGCTTTGTGC+TGG | - | chr2_4:5844791-5844810 | Msa0311020:CDS | 55.0% | |
| !! | CTTGGAGTGGTTGGTCTTGG+TGG | - | chr2_4:5844868-5844887 | Msa0311020:intron | 55.0% |
| ! | TCTTGGTGGCCTCGGTCATA+TGG | - | chr2_4:5844882-5844901 | Msa0311020:intron | 55.0% |
| !! | ACTGTTGCCGGAAGTGTTGC+AGG | - | chr2_4:5845413-5845432 | Msa0311020:CDS | 55.0% |
| GCTGGGGTTGTGGCAAAGGT+TGG | - | chr2_4:5844364-5844383 | Msa0311020:CDS | 60.0% | |
| !! | GTGGTTGGTCTTGGTGGCCT+CGG | - | chr2_4:5844874-5844893 | Msa0311020:intron | 60.0% |
| !! | GAGGAGGCGCTGAGCTTTCT+TGG | - | chr2_4:5844970-5844989 | Msa0311020:intron | 60.0% |
| !! | GTTGCCGGAAGTGTTGCAGG+TGG | - | chr2_4:5845416-5845435 | Msa0311020:CDS | 60.0% |
| GCTGGGGTTGTGGCAAAGGT+TGG | - | chr2_4:5844364-5844383 | Msa0311020:CDS | 60.0% | |
| !! | GTGGTTGGTCTTGGTGGCCT+CGG | - | chr2_4:5844874-5844893 | Msa0311020:intron | 60.0% |
| !! | GTTGCCGGAAGTGTTGCAGG+TGG | - | chr2_4:5845416-5845435 | Msa0311020:CDS | 60.0% |
| !! | GAGGAGGCGCTGAGCCTTCT+TGG | - | chr2_4:5851059-5851078 | Msa0311020:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 5843631 | 5852087 | 5843631 | ID=Msa0311020;Name=Msa0311020 |
| chr2_4 | mRNA | 5843631 | 5852087 | 5843631 | ID=Msa0311020-mRNA-1;Parent=Msa0311020;Name=Msa0311020-mRNA-1;_AED=0.17;_eAED=0.17;_QI=8|0.75|0.69|1|1|1|13|398|669 |
| chr2_4 | exon | 5843631 | 5844225 | 5843631 | ID=Msa0311020-mRNA-1:exon:2229;Parent=Msa0311020-mRNA-1 |
| chr2_4 | exon | 5844325 | 5844475 | 5844325 | ID=Msa0311020-mRNA-1:exon:2228;Parent=Msa0311020-mRNA-1 |
| chr2_4 | exon | 5844594 | 5844879 | 5844594 | ID=Msa0311020-mRNA-1:exon:2227;Parent=Msa0311020-mRNA-1 |
| chr2_4 | exon | 5845046 | 5845276 | 5845046 | ID=Msa0311020-mRNA-1:exon:2226;Parent=Msa0311020-mRNA-1 |
| chr2_4 | exon | 5845366 | 5845479 | 5845366 | ID=Msa0311020-mRNA-1:exon:2225;Parent=Msa0311020-mRNA-1 |
| chr2_4 | exon | 5845963 | 5846034 | 5845963 | ID=Msa0311020-mRNA-1:exon:2224;Parent=Msa0311020-mRNA-1 |
| chr2_4 | exon | 5850151 | 5850313 | 5850151 | ID=Msa0311020-mRNA-1:exon:2223;Parent=Msa0311020-mRNA-1 |
| chr2_4 | exon | 5850413 | 5850563 | 5850413 | ID=Msa0311020-mRNA-1:exon:2222;Parent=Msa0311020-mRNA-1 |
| chr2_4 | exon | 5850683 | 5850767 | 5850683 | ID=Msa0311020-mRNA-1:exon:2221;Parent=Msa0311020-mRNA-1 |
| chr2_4 | exon | 5850842 | 5850967 | 5850842 | ID=Msa0311020-mRNA-1:exon:2220;Parent=Msa0311020-mRNA-1 |
| chr2_4 | exon | 5851134 | 5851364 | 5851134 | ID=Msa0311020-mRNA-1:exon:2219;Parent=Msa0311020-mRNA-1 |
| chr2_4 | exon | 5851454 | 5851567 | 5851454 | ID=Msa0311020-mRNA-1:exon:2218;Parent=Msa0311020-mRNA-1 |
| chr2_4 | exon | 5851991 | 5852087 | 5851991 | ID=Msa0311020-mRNA-1:exon:2217;Parent=Msa0311020-mRNA-1 |
| chr2_4 | five_prime_UTR | 5852080 | 5852087 | 5852080 | ID=Msa0311020-mRNA-1:five_prime_utr;Parent=Msa0311020-mRNA-1 |
| chr2_4 | CDS | 5851991 | 5852079 | 5851991 | ID=Msa0311020-mRNA-1:cds;Parent=Msa0311020-mRNA-1 |
| chr2_4 | CDS | 5851454 | 5851567 | 5851454 | ID=Msa0311020-mRNA-1:cds;Parent=Msa0311020-mRNA-1 |
| chr2_4 | CDS | 5851134 | 5851364 | 5851134 | ID=Msa0311020-mRNA-1:cds;Parent=Msa0311020-mRNA-1 |
| chr2_4 | CDS | 5850842 | 5850967 | 5850842 | ID=Msa0311020-mRNA-1:cds;Parent=Msa0311020-mRNA-1 |
| chr2_4 | CDS | 5850683 | 5850767 | 5850683 | ID=Msa0311020-mRNA-1:cds;Parent=Msa0311020-mRNA-1 |
| chr2_4 | CDS | 5850413 | 5850563 | 5850413 | ID=Msa0311020-mRNA-1:cds;Parent=Msa0311020-mRNA-1 |
| chr2_4 | CDS | 5850151 | 5850313 | 5850151 | ID=Msa0311020-mRNA-1:cds;Parent=Msa0311020-mRNA-1 |
| chr2_4 | CDS | 5845963 | 5846034 | 5845963 | ID=Msa0311020-mRNA-1:cds;Parent=Msa0311020-mRNA-1 |
| chr2_4 | CDS | 5845366 | 5845479 | 5845366 | ID=Msa0311020-mRNA-1:cds;Parent=Msa0311020-mRNA-1 |
| chr2_4 | CDS | 5845046 | 5845276 | 5845046 | ID=Msa0311020-mRNA-1:cds;Parent=Msa0311020-mRNA-1 |
| chr2_4 | CDS | 5844594 | 5844879 | 5844594 | ID=Msa0311020-mRNA-1:cds;Parent=Msa0311020-mRNA-1 |
| chr2_4 | CDS | 5844325 | 5844475 | 5844325 | ID=Msa0311020-mRNA-1:cds;Parent=Msa0311020-mRNA-1 |
| chr2_4 | CDS | 5844029 | 5844225 | 5844029 | ID=Msa0311020-mRNA-1:cds;Parent=Msa0311020-mRNA-1 |
| chr2_4 | three_prime_UTR | 5843631 | 5844028 | 5843631 | ID=Msa0311020-mRNA-1:three_prime_utr;Parent=Msa0311020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
