Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0311460 | XP_024632494.1 | 94.145 | 427 | 25 | 0 | 1 | 427 | 1 | 427 | 0.0 | 851 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0311460 | sp|O81832|Y4729_ARATH | 41.244 | 434 | 242 | 6 | 1 | 427 | 1 | 428 | 1.08e-120 | 373 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0233240 | Msa0311460 | 0.801439 | 9.001739e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0311460 | MtrunA17_Chr2g0280681 | 94.145 | 427 | 25 | 0 | 1 | 427 | 1 | 427 | 0.0 | 851 |
Msa0311460 | MtrunA17_Chr2g0318811 | 42.993 | 421 | 236 | 3 | 8 | 427 | 4 | 421 | 6.49e-113 | 351 |
Msa0311460 | MtrunA17_Chr4g0042381 | 44.615 | 390 | 210 | 5 | 41 | 428 | 37 | 422 | 1.32e-110 | 344 |
Msa0311460 | MtrunA17_Chr3g0084651 | 38.063 | 444 | 269 | 4 | 1 | 440 | 1 | 442 | 1.81e-110 | 333 |
Msa0311460 | MtrunA17_Chr8g0361441 | 40.888 | 428 | 243 | 6 | 10 | 428 | 5 | 431 | 2.52e-110 | 344 |
Msa0311460 | MtrunA17_Chr8g0361311 | 42.299 | 435 | 231 | 9 | 2 | 427 | 3 | 426 | 4.95e-110 | 333 |
Msa0311460 | MtrunA17_Chr2g0280701 | 40.698 | 430 | 242 | 7 | 6 | 427 | 4 | 428 | 6.09e-110 | 343 |
Msa0311460 | MtrunA17_Chr4g0042391 | 39.030 | 474 | 269 | 7 | 6 | 465 | 3 | 470 | 1.07e-109 | 342 |
Msa0311460 | MtrunA17_Chr4g0042351 | 40.471 | 425 | 246 | 5 | 6 | 428 | 3 | 422 | 2.65e-109 | 340 |
Msa0311460 | MtrunA17_Chr3g0084681 | 41.096 | 438 | 250 | 5 | 1 | 433 | 1 | 435 | 2.86e-109 | 340 |
Msa0311460 | MtrunA17_Chr4g0042441 | 40.845 | 426 | 245 | 4 | 7 | 427 | 5 | 428 | 3.38e-109 | 342 |
Msa0311460 | MtrunA17_Chr4g0042401 | 39.860 | 429 | 243 | 6 | 6 | 427 | 9 | 429 | 9.68e-109 | 340 |
Msa0311460 | MtrunA17_Chr5g0422921 | 40.816 | 441 | 248 | 7 | 17 | 445 | 8 | 447 | 1.83e-108 | 339 |
Msa0311460 | MtrunA17_Chr3g0098791 | 40.046 | 432 | 250 | 4 | 1 | 427 | 1 | 428 | 2.89e-108 | 333 |
Msa0311460 | MtrunA17_Chr4g0042421 | 38.785 | 428 | 252 | 4 | 7 | 427 | 5 | 429 | 7.59e-108 | 334 |
Msa0311460 | MtrunA17_Chr4g0048631 | 41.284 | 436 | 238 | 10 | 4 | 428 | 5 | 433 | 8.83e-108 | 338 |
Msa0311460 | MtrunA17_Chr8g0361251 | 43.218 | 435 | 227 | 9 | 5 | 430 | 6 | 429 | 1.93e-107 | 337 |
Msa0311460 | MtrunA17_Chr3g0093161 | 40.984 | 427 | 238 | 7 | 10 | 428 | 3 | 423 | 3.68e-107 | 336 |
Msa0311460 | MtrunA17_Chr2g0280691 | 39.618 | 419 | 249 | 4 | 11 | 427 | 9 | 425 | 2.36e-106 | 335 |
Msa0311460 | MtrunA17_Chr2g0318841 | 41.784 | 426 | 238 | 5 | 10 | 429 | 6 | 427 | 4.15e-105 | 331 |
Msa0311460 | MtrunA17_Chr3g0084491 | 39.535 | 430 | 255 | 4 | 1 | 427 | 14 | 441 | 1.18e-104 | 330 |
Msa0311460 | MtrunA17_Chr3g0078551 | 41.244 | 434 | 241 | 6 | 8 | 427 | 7 | 440 | 1.76e-104 | 330 |
Msa0311460 | MtrunA17_Chr8g0361281 | 42.092 | 392 | 217 | 7 | 50 | 432 | 44 | 434 | 4.66e-104 | 328 |
Msa0311460 | MtrunA17_Chr5g0428111 | 39.801 | 402 | 237 | 4 | 25 | 422 | 27 | 427 | 9.54e-104 | 327 |
Msa0311460 | MtrunA17_Chr3g0084621 | 40.648 | 401 | 233 | 3 | 30 | 427 | 31 | 429 | 3.96e-103 | 320 |
Msa0311460 | MtrunA17_Chr2g0280711 | 42.506 | 407 | 220 | 10 | 31 | 427 | 30 | 432 | 4.44e-103 | 326 |
Msa0311460 | MtrunA17_Chr3g0084441 | 40.640 | 406 | 237 | 3 | 26 | 427 | 27 | 432 | 4.61e-103 | 325 |
Msa0311460 | MtrunA17_Chr2g0318831 | 41.232 | 422 | 244 | 3 | 7 | 427 | 6 | 424 | 7.26e-103 | 325 |
Msa0311460 | MtrunA17_Chr4g0042361 | 38.942 | 416 | 231 | 8 | 24 | 423 | 55 | 463 | 2.69e-102 | 324 |
Msa0311460 | MtrunA17_Chr3g0084451 | 40.447 | 403 | 236 | 2 | 26 | 427 | 27 | 426 | 1.46e-101 | 322 |
Msa0311460 | MtrunA17_Chr3g0084691 | 38.568 | 433 | 262 | 3 | 1 | 431 | 1 | 431 | 1.68e-101 | 322 |
Msa0311460 | MtrunA17_Chr5g0428101 | 39.437 | 426 | 247 | 7 | 7 | 422 | 3 | 427 | 1.98e-101 | 321 |
Msa0311460 | MtrunA17_Chr3g0084411 | 39.120 | 432 | 251 | 7 | 1 | 427 | 1 | 425 | 1.27e-100 | 319 |
Msa0311460 | MtrunA17_Chr8g0361431 | 40.000 | 425 | 221 | 8 | 10 | 427 | 16 | 413 | 5.01e-100 | 317 |
Msa0311460 | MtrunA17_Chr8g0361301 | 41.339 | 433 | 233 | 9 | 3 | 427 | 7 | 426 | 7.80e-100 | 317 |
Msa0311460 | MtrunA17_Chr3g0078521 | 39.863 | 439 | 248 | 8 | 4 | 427 | 2 | 439 | 9.36e-100 | 317 |
Msa0311460 | MtrunA17_Chr3g0084421 | 41.645 | 377 | 215 | 3 | 54 | 427 | 14 | 388 | 1.42e-99 | 315 |
Msa0311460 | MtrunA17_Chr8g0361261 | 40.878 | 433 | 235 | 9 | 3 | 427 | 38 | 457 | 4.98e-98 | 313 |
Msa0311460 | MtrunA17_Chr3g0084431 | 40.416 | 433 | 242 | 6 | 1 | 427 | 1 | 423 | 5.69e-97 | 309 |
Msa0311460 | MtrunA17_Chr4g0042341 | 37.130 | 439 | 247 | 10 | 5 | 423 | 2 | 431 | 3.92e-96 | 308 |
Msa0311460 | MtrunA17_Chr3g0078531 | 39.171 | 434 | 248 | 9 | 9 | 427 | 18 | 450 | 1.00e-95 | 306 |
Msa0311460 | MtrunA17_Chr3g0078541 | 40.338 | 414 | 231 | 8 | 29 | 427 | 38 | 450 | 6.48e-93 | 299 |
Msa0311460 | MtrunA17_Chr4g0048801 | 41.190 | 420 | 229 | 10 | 29 | 434 | 22 | 437 | 3.64e-90 | 292 |
Msa0311460 | MtrunA17_Chr4g0048761 | 37.045 | 440 | 259 | 10 | 2 | 428 | 16 | 450 | 3.53e-89 | 284 |
Msa0311460 | MtrunA17_Chr4g0048691 | 36.557 | 424 | 253 | 8 | 21 | 431 | 39 | 459 | 1.37e-88 | 279 |
Msa0311460 | MtrunA17_Chr4g0048721 | 36.261 | 444 | 264 | 10 | 1 | 428 | 1 | 441 | 3.56e-88 | 278 |
Msa0311460 | MtrunA17_Chr4g0023071 | 36.735 | 441 | 255 | 9 | 2 | 427 | 3 | 434 | 1.58e-87 | 285 |
Msa0311460 | MtrunA17_Chr7g0236651 | 37.355 | 431 | 246 | 9 | 10 | 428 | 7 | 425 | 5.70e-86 | 280 |
Msa0311460 | MtrunA17_Chr7g0236161 | 37.613 | 444 | 243 | 13 | 3 | 428 | 7 | 434 | 7.72e-86 | 278 |
Msa0311460 | MtrunA17_Chr7g0236201 | 37.613 | 444 | 243 | 13 | 3 | 428 | 7 | 434 | 1.60e-85 | 278 |
Msa0311460 | MtrunA17_Chr7g0236521 | 37.046 | 413 | 220 | 8 | 39 | 431 | 18 | 410 | 1.65e-85 | 268 |
Msa0311460 | MtrunA17_Chr7g0236121 | 36.784 | 454 | 254 | 12 | 8 | 444 | 13 | 450 | 1.01e-84 | 277 |
Msa0311460 | MtrunA17_Chr4g0048651 | 36.636 | 434 | 259 | 9 | 8 | 428 | 26 | 456 | 2.19e-83 | 265 |
Msa0311460 | MtrunA17_Chr2g0323301 | 36.983 | 411 | 239 | 7 | 30 | 427 | 29 | 432 | 3.39e-83 | 273 |
Msa0311460 | MtrunA17_Chr7g0236511 | 36.490 | 433 | 245 | 9 | 10 | 427 | 15 | 432 | 4.44e-83 | 272 |
Msa0311460 | MtrunA17_Chr7g0236561 | 36.386 | 415 | 238 | 8 | 22 | 423 | 1 | 402 | 8.13e-83 | 272 |
Msa0311460 | MtrunA17_Chr7g0236641 | 37.907 | 430 | 244 | 9 | 10 | 427 | 9 | 427 | 2.34e-82 | 271 |
Msa0311460 | MtrunA17_Chr4g0055021 | 38.221 | 416 | 228 | 10 | 10 | 410 | 9 | 410 | 7.76e-82 | 259 |
Msa0311460 | MtrunA17_Chr2g0280841 | 35.973 | 442 | 244 | 13 | 10 | 427 | 10 | 436 | 1.31e-80 | 256 |
Msa0311460 | MtrunA17_Chr4g0048791 | 37.500 | 416 | 245 | 8 | 25 | 428 | 37 | 449 | 1.69e-80 | 266 |
Msa0311460 | MtrunA17_Chr4g0048741 | 35.308 | 439 | 268 | 9 | 2 | 428 | 16 | 450 | 3.55e-80 | 265 |
Msa0311460 | MtrunA17_Chr4g0048641 | 36.908 | 401 | 213 | 8 | 37 | 428 | 57 | 426 | 1.00e-78 | 260 |
Msa0311460 | MtrunA17_Chr7g0236691 | 35.267 | 431 | 253 | 8 | 10 | 427 | 9 | 426 | 2.44e-78 | 260 |
Msa0311460 | MtrunA17_Chr7g0236231 | 34.332 | 434 | 251 | 11 | 11 | 428 | 19 | 434 | 3.13e-78 | 260 |
Msa0311460 | MtrunA17_Chr2g0280791 | 34.368 | 451 | 248 | 12 | 10 | 432 | 5 | 435 | 1.57e-77 | 258 |
Msa0311460 | MtrunA17_Chr7g0236551 | 34.198 | 424 | 266 | 6 | 10 | 429 | 9 | 423 | 5.55e-77 | 256 |
Msa0311460 | MtrunA17_Chr8g0340061 | 34.954 | 432 | 252 | 9 | 10 | 427 | 11 | 427 | 2.45e-76 | 247 |
Msa0311460 | MtrunA17_Chr2g0280801 | 34.812 | 451 | 237 | 13 | 10 | 427 | 10 | 436 | 1.55e-74 | 250 |
Msa0311460 | MtrunA17_Chr7g0236341 | 35.556 | 405 | 244 | 8 | 29 | 427 | 28 | 421 | 3.76e-74 | 249 |
Msa0311460 | MtrunA17_Chr4g0048581 | 35.129 | 427 | 250 | 13 | 14 | 428 | 23 | 434 | 1.20e-72 | 245 |
Msa0311460 | MtrunA17_Chr2g0280771 | 33.784 | 444 | 253 | 12 | 10 | 427 | 1 | 429 | 6.04e-71 | 237 |
Msa0311460 | MtrunA17_Chr2g0280781 | 35.426 | 446 | 242 | 16 | 10 | 427 | 1 | 428 | 1.87e-70 | 239 |
Msa0311460 | MtrunA17_Chr8g0340081 | 33.333 | 438 | 261 | 11 | 10 | 432 | 13 | 434 | 1.42e-69 | 236 |
Msa0311460 | MtrunA17_Chr8g0340071 | 33.721 | 430 | 255 | 10 | 10 | 424 | 11 | 425 | 2.17e-67 | 230 |
Msa0311460 | MtrunA17_Chr8g0340111 | 34.458 | 415 | 244 | 11 | 25 | 424 | 27 | 428 | 1.11e-66 | 228 |
Msa0311460 | MtrunA17_Chr8g0340091 | 33.257 | 439 | 233 | 12 | 6 | 429 | 64 | 457 | 2.91e-62 | 217 |
Msa0311460 | MtrunA17_Chr6g0453571 | 38.662 | 269 | 156 | 6 | 162 | 427 | 3 | 265 | 1.14e-56 | 193 |
Msa0311460 | MtrunA17_Chr2g0280731 | 33.415 | 407 | 226 | 14 | 41 | 427 | 44 | 425 | 2.64e-55 | 197 |
Msa0311460 | MtrunA17_Chr4g0020081 | 33.251 | 406 | 229 | 15 | 42 | 428 | 40 | 422 | 3.45e-54 | 194 |
Msa0311460 | MtrunA17_Chr2g0280751 | 33.252 | 409 | 227 | 14 | 41 | 428 | 48 | 431 | 5.05e-54 | 194 |
Msa0311460 | MtrunA17_Chr4g0023221 | 31.250 | 432 | 254 | 14 | 27 | 427 | 44 | 463 | 3.35e-51 | 186 |
Msa0311460 | MtrunA17_Chr2g0323341 | 35.274 | 292 | 164 | 7 | 151 | 427 | 62 | 343 | 1.59e-50 | 182 |
Msa0311460 | MtrunA17_Chr8g0361151 | 31.387 | 411 | 245 | 15 | 4 | 401 | 5 | 391 | 2.75e-48 | 171 |
Msa0311460 | MtrunA17_Chr2g0323241 | 29.801 | 453 | 255 | 20 | 6 | 428 | 7 | 426 | 9.68e-48 | 170 |
Msa0311460 | MtrunA17_Chr8g0361141 | 31.095 | 402 | 227 | 12 | 4 | 387 | 5 | 374 | 8.24e-46 | 170 |
Msa0311460 | MtrunA17_Chr7g0236471 | 31.900 | 279 | 168 | 6 | 163 | 427 | 1 | 271 | 2.32e-40 | 153 |
Msa0311460 | MtrunA17_Chr7g0236571 | 33.214 | 280 | 166 | 6 | 162 | 428 | 8 | 279 | 1.18e-39 | 151 |
Msa0311460 | MtrunA17_Chr8g0348661 | 28.058 | 417 | 254 | 13 | 30 | 422 | 14 | 408 | 6.82e-39 | 150 |
Msa0311460 | MtrunA17_Chr8g0360201 | 32.177 | 317 | 176 | 12 | 123 | 427 | 17 | 306 | 3.10e-38 | 147 |
Msa0311460 | MtrunA17_Chr6g0453581 | 43.125 | 160 | 86 | 2 | 9 | 163 | 3 | 162 | 2.09e-36 | 132 |
Msa0311460 | MtrunA17_Chr7g0236591 | 36.948 | 249 | 136 | 6 | 10 | 255 | 36 | 266 | 1.88e-34 | 130 |
Msa0311460 | MtrunA17_Chr4g0023111 | 28.294 | 463 | 243 | 23 | 3 | 411 | 6 | 433 | 5.77e-33 | 132 |
Msa0311460 | MtrunA17_Chr8g0357691 | 26.959 | 434 | 244 | 14 | 2 | 420 | 8 | 383 | 1.17e-30 | 125 |
Msa0311460 | MtrunA17_Chr4g0048681 | 29.224 | 219 | 123 | 3 | 214 | 428 | 10 | 200 | 6.60e-30 | 122 |
Msa0311460 | MtrunA17_Chr8g0357991 | 30.240 | 334 | 189 | 12 | 77 | 401 | 73 | 371 | 9.09e-29 | 120 |
Msa0311460 | MtrunA17_Chr8g0357961 | 28.608 | 388 | 235 | 12 | 18 | 401 | 21 | 370 | 1.67e-27 | 116 |
Msa0311460 | MtrunA17_Chr8g0358151 | 27.163 | 416 | 239 | 15 | 18 | 426 | 21 | 379 | 4.74e-27 | 112 |
Msa0311460 | MtrunA17_Chr8g0358031 | 28.165 | 387 | 227 | 12 | 18 | 399 | 22 | 362 | 3.00e-26 | 112 |
Msa0311460 | MtrunA17_Chr3g0106201 | 26.515 | 396 | 258 | 15 | 40 | 419 | 32 | 410 | 5.21e-26 | 111 |
Msa0311460 | MtrunA17_Chr8g0357801 | 26.434 | 401 | 243 | 10 | 3 | 399 | 7 | 359 | 2.50e-25 | 109 |
Msa0311460 | MtrunA17_Chr3g0106131 | 26.392 | 413 | 246 | 18 | 6 | 394 | 8 | 386 | 2.75e-25 | 109 |
Msa0311460 | MtrunA17_Chr4g0053161 | 26.870 | 361 | 228 | 14 | 42 | 386 | 61 | 401 | 7.36e-25 | 108 |
Msa0311460 | MtrunA17_Chr8g0357931 | 26.617 | 402 | 233 | 12 | 7 | 399 | 10 | 358 | 1.22e-24 | 107 |
Msa0311460 | MtrunA17_Chr3g0106221 | 26.238 | 404 | 249 | 16 | 6 | 386 | 10 | 387 | 5.10e-24 | 105 |
Msa0311460 | MtrunA17_Chr3g0106151 | 26.077 | 441 | 269 | 18 | 1 | 422 | 4 | 406 | 1.42e-23 | 104 |
Msa0311460 | MtrunA17_Chr3g0106211 | 25.862 | 406 | 256 | 15 | 7 | 395 | 13 | 390 | 6.05e-23 | 102 |
Msa0311460 | MtrunA17_Chr8g0358071 | 26.536 | 358 | 205 | 11 | 77 | 426 | 79 | 386 | 1.05e-22 | 101 |
Msa0311460 | MtrunA17_Chr8g0357651 | 28.608 | 388 | 202 | 16 | 27 | 399 | 31 | 358 | 1.40e-22 | 101 |
Msa0311460 | MtrunA17_Chr3g0106141 | 26.525 | 377 | 228 | 14 | 43 | 395 | 35 | 386 | 1.51e-22 | 101 |
Msa0311460 | MtrunA17_Chr8g0358101 | 25.245 | 408 | 242 | 12 | 1 | 401 | 4 | 355 | 2.86e-22 | 100 |
Msa0311460 | MtrunA17_Chr8g0358081 | 27.919 | 394 | 212 | 14 | 18 | 401 | 21 | 352 | 3.09e-22 | 100 |
Msa0311460 | MtrunA17_Chr7g0237331 | 27.374 | 358 | 227 | 14 | 43 | 386 | 44 | 382 | 3.48e-22 | 100 |
Msa0311460 | MtrunA17_Chr8g0357881 | 26.368 | 402 | 242 | 14 | 3 | 399 | 13 | 365 | 3.79e-22 | 99.8 |
Msa0311460 | MtrunA17_Chr4g0055001 | 34.074 | 135 | 79 | 3 | 299 | 427 | 14 | 144 | 6.54e-22 | 92.0 |
Msa0311460 | MtrunA17_Chr8g0357761 | 26.781 | 407 | 230 | 18 | 6 | 399 | 15 | 366 | 2.98e-21 | 97.1 |
Msa0311460 | MtrunA17_Chr8g0357681 | 26.895 | 409 | 237 | 17 | 2 | 399 | 8 | 365 | 3.96e-21 | 95.1 |
Msa0311460 | MtrunA17_Chr3g0106121 | 24.750 | 400 | 252 | 17 | 6 | 386 | 8 | 377 | 4.43e-21 | 96.7 |
Msa0311460 | MtrunA17_Chr3g0134291 | 26.133 | 375 | 235 | 15 | 40 | 393 | 38 | 391 | 5.03e-21 | 96.7 |
Msa0311460 | MtrunA17_Chr1g0162031 | 29.697 | 165 | 90 | 2 | 172 | 336 | 12 | 150 | 5.93e-21 | 92.0 |
Msa0311460 | MtrunA17_Chr0c04g0492031 | 26.133 | 375 | 235 | 15 | 40 | 393 | 38 | 391 | 7.74e-21 | 95.9 |
Msa0311460 | MtrunA17_Chr0c04g0492001 | 26.133 | 375 | 235 | 15 | 40 | 393 | 38 | 391 | 1.21e-20 | 95.1 |
Msa0311460 | MtrunA17_Chr7g0237341 | 26.301 | 365 | 222 | 14 | 43 | 386 | 43 | 381 | 1.60e-20 | 94.7 |
Msa0311460 | MtrunA17_Chr7g0237351 | 26.519 | 362 | 228 | 12 | 42 | 386 | 42 | 382 | 1.96e-20 | 94.7 |
Msa0311460 | MtrunA17_Chr8g0357631 | 27.318 | 399 | 222 | 14 | 8 | 395 | 11 | 352 | 7.01e-20 | 92.8 |
Msa0311460 | MtrunA17_Chr2g0318941 | 42.157 | 102 | 56 | 2 | 314 | 413 | 1 | 101 | 9.41e-20 | 88.6 |
Msa0311460 | MtrunA17_Chr1g0191111 | 33.333 | 180 | 117 | 2 | 77 | 254 | 85 | 263 | 7.85e-19 | 86.3 |
Msa0311460 | MtrunA17_Chr2g0318181 | 23.788 | 433 | 254 | 18 | 7 | 428 | 14 | 381 | 1.99e-18 | 87.4 |
Msa0311460 | MtrunA17_Chr7g0237391 | 27.747 | 364 | 221 | 15 | 42 | 386 | 41 | 381 | 2.19e-18 | 88.2 |
Msa0311460 | MtrunA17_Chr1g0202331 | 25.000 | 432 | 244 | 23 | 11 | 385 | 4 | 412 | 3.67e-18 | 87.8 |
Msa0311460 | MtrunA17_Chr8g0358121 | 25.707 | 389 | 224 | 16 | 17 | 399 | 20 | 349 | 3.72e-18 | 87.4 |
Msa0311460 | MtrunA17_Chr8g0357711 | 28.329 | 353 | 188 | 16 | 57 | 399 | 66 | 363 | 8.82e-18 | 86.3 |
Msa0311460 | MtrunA17_Chr4g0063701 | 25.137 | 366 | 233 | 14 | 44 | 385 | 54 | 402 | 1.32e-17 | 85.9 |
Msa0311460 | MtrunA17_Chr3g0137741 | 26.301 | 365 | 205 | 18 | 43 | 385 | 53 | 375 | 1.54e-17 | 85.5 |
Msa0311460 | MtrunA17_Chr8g0357821 | 36.709 | 158 | 91 | 5 | 27 | 179 | 36 | 189 | 1.75e-17 | 81.3 |
Msa0311460 | MtrunA17_Chr2g0315841 | 27.548 | 363 | 213 | 18 | 50 | 386 | 63 | 401 | 2.70e-17 | 84.0 |
Msa0311460 | MtrunA17_Chr8g0338511 | 25.980 | 408 | 254 | 18 | 43 | 422 | 50 | 437 | 6.02e-17 | 82.8 |
Msa0311460 | MtrunA17_Chr8g0358051 | 43.000 | 100 | 57 | 0 | 78 | 177 | 73 | 172 | 7.73e-17 | 78.6 |
Msa0311460 | MtrunA17_Chr2g0315851 | 27.838 | 370 | 205 | 19 | 50 | 386 | 63 | 403 | 2.23e-16 | 81.3 |
Msa0311460 | MtrunA17_Chr3g0106191 | 26.923 | 312 | 202 | 11 | 80 | 386 | 1 | 291 | 1.14e-15 | 79.7 |
Msa0311460 | MtrunA17_Chr8g0358131 | 41.414 | 99 | 58 | 0 | 82 | 180 | 3 | 101 | 2.31e-15 | 72.4 |
Msa0311460 | MtrunA17_Chr8g0338471 | 24.524 | 420 | 269 | 16 | 38 | 430 | 39 | 437 | 6.38e-15 | 77.4 |
Msa0311460 | MtrunA17_Chr5g0435321 | 41.667 | 84 | 45 | 1 | 335 | 414 | 3 | 86 | 1.18e-14 | 69.3 |
Msa0311460 | MtrunA17_Chr7g0236661 | 45.122 | 82 | 43 | 1 | 25 | 106 | 2 | 81 | 1.52e-14 | 68.9 |
Msa0311460 | MtrunA17_Chr8g0338501 | 24.031 | 387 | 250 | 13 | 25 | 383 | 52 | 422 | 6.82e-14 | 74.3 |
Msa0311460 | MtrunA17_Chr2g0311511 | 25.705 | 319 | 174 | 15 | 39 | 317 | 47 | 342 | 1.36e-13 | 73.2 |
Msa0311460 | MtrunA17_Chr1g0149381 | 23.810 | 357 | 224 | 14 | 43 | 385 | 58 | 380 | 1.43e-13 | 73.2 |
Msa0311460 | MtrunA17_Chr7g0234561 | 27.687 | 307 | 178 | 12 | 98 | 386 | 42 | 322 | 2.31e-13 | 72.4 |
Msa0311460 | MtrunA17_Chr4g0048671 | 43.662 | 71 | 40 | 0 | 25 | 95 | 21 | 91 | 2.70e-13 | 65.9 |
Msa0311460 | MtrunA17_Chr8g0338521 | 35.294 | 136 | 79 | 5 | 33 | 165 | 4 | 133 | 7.83e-13 | 69.7 |
Msa0311460 | MtrunA17_Chr2g0281251 | 32.955 | 88 | 57 | 2 | 235 | 321 | 3 | 89 | 8.84e-13 | 64.3 |
Msa0311460 | MtrunA17_Chr2g0315871 | 32.667 | 150 | 74 | 5 | 78 | 224 | 60 | 185 | 8.54e-12 | 65.9 |
Msa0311460 | MtrunA17_Chr4g0023091 | 32.468 | 154 | 82 | 7 | 4 | 138 | 7 | 157 | 9.77e-12 | 63.5 |
Msa0311460 | MtrunA17_Chr6g0467281 | 23.333 | 330 | 205 | 12 | 77 | 389 | 71 | 369 | 2.61e-11 | 66.2 |
Msa0311460 | MtrunA17_Chr7g0265791 | 24.234 | 359 | 228 | 16 | 43 | 383 | 56 | 388 | 4.24e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0311460 | AT4G27290.1 | 41.244 | 434 | 242 | 6 | 1 | 427 | 1 | 428 | 1.10e-121 | 373 |
Msa0311460 | AT4G27290.2 | 41.244 | 434 | 242 | 6 | 1 | 427 | 1 | 428 | 3.04e-121 | 374 |
Msa0311460 | AT4G21380.2 | 43.627 | 408 | 224 | 5 | 25 | 427 | 26 | 432 | 6.72e-120 | 363 |
Msa0311460 | AT4G21380.1 | 43.627 | 408 | 224 | 5 | 25 | 427 | 26 | 432 | 2.47e-117 | 364 |
Msa0311460 | AT1G65800.2 | 41.791 | 402 | 228 | 6 | 30 | 427 | 31 | 430 | 7.99e-105 | 325 |
Msa0311460 | AT1G65790.3 | 39.706 | 408 | 236 | 6 | 25 | 427 | 24 | 426 | 1.15e-102 | 319 |
Msa0311460 | AT1G65790.2 | 39.706 | 408 | 236 | 6 | 25 | 427 | 24 | 426 | 1.15e-102 | 319 |
Msa0311460 | AT1G65800.1 | 41.791 | 402 | 228 | 6 | 30 | 427 | 31 | 430 | 1.59e-102 | 325 |
Msa0311460 | AT1G65790.1 | 39.706 | 408 | 236 | 6 | 25 | 427 | 24 | 426 | 2.21e-100 | 319 |
Msa0311460 | AT3G12000.1 | 39.175 | 388 | 226 | 5 | 32 | 410 | 38 | 424 | 6.49e-91 | 283 |
Msa0311460 | AT4G27300.1 | 39.614 | 414 | 228 | 9 | 29 | 427 | 26 | 432 | 1.01e-90 | 293 |
Msa0311460 | AT1G11340.2 | 36.829 | 410 | 246 | 7 | 29 | 428 | 88 | 494 | 1.29e-84 | 275 |
Msa0311460 | AT1G11340.3 | 36.829 | 410 | 246 | 7 | 29 | 428 | 88 | 494 | 4.71e-84 | 275 |
Msa0311460 | AT1G11300.2 | 32.967 | 455 | 273 | 11 | 6 | 445 | 10 | 447 | 6.75e-84 | 275 |
Msa0311460 | AT1G11340.1 | 36.829 | 410 | 246 | 7 | 29 | 428 | 20 | 426 | 9.51e-84 | 275 |
Msa0311460 | AT1G11410.1 | 34.951 | 412 | 255 | 7 | 27 | 428 | 21 | 429 | 1.93e-82 | 272 |
Msa0311460 | AT1G11410.4 | 34.951 | 412 | 255 | 7 | 27 | 428 | 28 | 436 | 2.61e-82 | 271 |
Msa0311460 | AT1G11300.1 | 33.483 | 445 | 264 | 11 | 6 | 435 | 10 | 437 | 1.13e-81 | 269 |
Msa0311460 | AT1G11410.3 | 35.264 | 397 | 244 | 7 | 42 | 428 | 12 | 405 | 2.11e-80 | 266 |
Msa0311460 | AT1G11303.1 | 32.809 | 445 | 266 | 9 | 15 | 441 | 14 | 443 | 5.44e-77 | 256 |
Msa0311460 | AT1G11280.5 | 33.945 | 436 | 259 | 8 | 7 | 428 | 8 | 428 | 1.31e-76 | 253 |
Msa0311460 | AT1G61610.2 | 36.407 | 423 | 242 | 10 | 23 | 428 | 24 | 436 | 4.47e-76 | 253 |
Msa0311460 | AT1G61610.1 | 36.407 | 423 | 242 | 10 | 23 | 428 | 24 | 436 | 1.06e-75 | 253 |
Msa0311460 | AT1G11280.3 | 33.945 | 436 | 259 | 8 | 7 | 428 | 8 | 428 | 1.12e-75 | 253 |
Msa0311460 | AT1G11280.4 | 33.945 | 436 | 259 | 8 | 7 | 428 | 18 | 438 | 1.44e-75 | 253 |
Msa0311460 | AT1G11280.2 | 33.945 | 436 | 259 | 8 | 7 | 428 | 8 | 428 | 1.67e-75 | 253 |
Msa0311460 | AT1G11280.1 | 33.945 | 436 | 259 | 8 | 7 | 428 | 18 | 438 | 2.29e-75 | 253 |
Msa0311460 | AT1G61440.1 | 33.333 | 435 | 266 | 8 | 20 | 445 | 10 | 429 | 3.99e-75 | 251 |
Msa0311460 | AT1G61440.3 | 33.333 | 435 | 266 | 8 | 20 | 445 | 10 | 429 | 4.84e-75 | 251 |
Msa0311460 | AT1G61440.2 | 33.333 | 435 | 266 | 8 | 20 | 445 | 10 | 429 | 8.66e-75 | 251 |
Msa0311460 | AT2G19130.1 | 33.410 | 434 | 269 | 11 | 6 | 427 | 1 | 426 | 4.42e-74 | 249 |
Msa0311460 | AT1G61430.2 | 32.819 | 454 | 277 | 10 | 1 | 445 | 1 | 435 | 1.30e-73 | 243 |
Msa0311460 | AT1G61430.6 | 32.819 | 454 | 277 | 10 | 1 | 445 | 1 | 435 | 1.30e-73 | 243 |
Msa0311460 | AT1G61420.2 | 35.135 | 407 | 242 | 9 | 31 | 428 | 26 | 419 | 1.42e-73 | 247 |
Msa0311460 | AT1G61420.4 | 35.135 | 407 | 242 | 9 | 31 | 428 | 26 | 419 | 1.42e-73 | 247 |
Msa0311460 | AT1G61430.4 | 33.019 | 424 | 261 | 8 | 31 | 445 | 3 | 412 | 1.59e-73 | 242 |
Msa0311460 | AT1G61550.1 | 34.118 | 425 | 256 | 8 | 13 | 428 | 5 | 414 | 1.71e-73 | 247 |
Msa0311460 | AT1G61420.1 | 35.135 | 407 | 242 | 9 | 31 | 428 | 26 | 419 | 1.78e-73 | 247 |
Msa0311460 | AT1G11330.3 | 35.154 | 421 | 235 | 11 | 30 | 427 | 34 | 439 | 2.58e-73 | 245 |
Msa0311460 | AT1G61430.3 | 33.019 | 424 | 261 | 8 | 31 | 445 | 35 | 444 | 3.07e-73 | 242 |
Msa0311460 | AT1G61500.3 | 34.192 | 427 | 256 | 8 | 13 | 427 | 11 | 424 | 3.51e-73 | 246 |
Msa0311460 | AT1G61500.1 | 34.192 | 427 | 256 | 8 | 13 | 427 | 6 | 419 | 3.84e-73 | 246 |
Msa0311460 | AT1G11330.1 | 35.154 | 421 | 235 | 11 | 30 | 427 | 34 | 439 | 1.26e-72 | 245 |
Msa0311460 | AT1G11330.2 | 35.154 | 421 | 235 | 11 | 30 | 427 | 34 | 439 | 1.28e-72 | 245 |
Msa0311460 | AT1G61400.1 | 32.391 | 460 | 277 | 9 | 5 | 445 | 2 | 446 | 1.38e-72 | 244 |
Msa0311460 | AT1G61400.2 | 32.391 | 460 | 277 | 9 | 5 | 445 | 2 | 446 | 1.52e-72 | 244 |
Msa0311460 | AT1G61430.8 | 32.819 | 454 | 277 | 10 | 1 | 445 | 1 | 435 | 2.00e-72 | 243 |
Msa0311460 | AT1G61430.7 | 32.819 | 454 | 277 | 10 | 1 | 445 | 1 | 435 | 2.00e-72 | 243 |
Msa0311460 | AT1G61430.5 | 32.819 | 454 | 277 | 10 | 1 | 445 | 1 | 435 | 2.00e-72 | 243 |
Msa0311460 | AT1G61430.10 | 33.019 | 424 | 261 | 8 | 31 | 445 | 3 | 412 | 2.38e-72 | 242 |
Msa0311460 | AT1G61430.1 | 32.819 | 454 | 277 | 10 | 1 | 445 | 1 | 435 | 6.61e-72 | 243 |
Msa0311460 | AT1G61430.9 | 32.819 | 454 | 277 | 10 | 1 | 445 | 1 | 435 | 7.38e-72 | 243 |
Msa0311460 | AT1G61430.11 | 33.019 | 424 | 261 | 8 | 31 | 445 | 3 | 412 | 7.40e-72 | 242 |
Msa0311460 | AT1G61430.12 | 33.019 | 424 | 261 | 8 | 31 | 445 | 3 | 412 | 7.40e-72 | 242 |
Msa0311460 | AT1G61430.13 | 33.019 | 424 | 261 | 8 | 31 | 445 | 3 | 412 | 7.40e-72 | 242 |
Msa0311460 | AT1G61380.1 | 33.256 | 433 | 263 | 8 | 9 | 428 | 3 | 422 | 8.59e-72 | 242 |
Msa0311460 | AT1G61370.1 | 32.414 | 435 | 266 | 8 | 11 | 428 | 4 | 427 | 1.08e-71 | 242 |
Msa0311460 | AT4G21390.2 | 34.906 | 424 | 242 | 14 | 25 | 428 | 23 | 432 | 2.36e-71 | 240 |
Msa0311460 | AT4G21390.1 | 34.906 | 424 | 242 | 14 | 25 | 428 | 23 | 432 | 4.26e-71 | 241 |
Msa0311460 | AT1G61390.1 | 33.180 | 434 | 262 | 9 | 9 | 428 | 24 | 443 | 1.30e-70 | 239 |
Msa0311460 | AT1G61490.4 | 31.579 | 437 | 272 | 9 | 1 | 428 | 1 | 419 | 1.35e-70 | 239 |
Msa0311460 | AT1G61490.1 | 31.579 | 437 | 272 | 9 | 1 | 428 | 1 | 419 | 1.35e-70 | 239 |
Msa0311460 | AT1G61490.2 | 31.579 | 437 | 272 | 9 | 1 | 428 | 1 | 419 | 1.35e-70 | 239 |
Msa0311460 | AT1G61490.5 | 31.579 | 437 | 272 | 9 | 1 | 428 | 1 | 419 | 1.35e-70 | 239 |
Msa0311460 | AT1G61500.2 | 34.152 | 407 | 246 | 7 | 30 | 427 | 8 | 401 | 2.16e-69 | 236 |
Msa0311460 | AT1G11350.1 | 33.413 | 416 | 253 | 9 | 27 | 427 | 21 | 427 | 1.04e-68 | 234 |
Msa0311460 | AT1G61360.1 | 32.080 | 452 | 282 | 9 | 9 | 447 | 1 | 440 | 3.74e-68 | 233 |
Msa0311460 | AT1G61480.1 | 32.779 | 421 | 259 | 9 | 17 | 428 | 14 | 419 | 2.30e-66 | 228 |
Msa0311460 | AT1G61490.6 | 31.034 | 435 | 251 | 9 | 1 | 428 | 1 | 393 | 1.93e-65 | 225 |
Msa0311460 | AT1G61490.7 | 31.034 | 435 | 251 | 9 | 1 | 428 | 1 | 393 | 1.93e-65 | 225 |
Msa0311460 | AT1G11410.2 | 36.129 | 310 | 189 | 5 | 125 | 428 | 8 | 314 | 7.30e-63 | 217 |
Msa0311460 | AT4G03230.8 | 32.692 | 416 | 225 | 15 | 41 | 428 | 42 | 430 | 6.49e-62 | 216 |
Msa0311460 | AT4G03230.4 | 32.530 | 415 | 225 | 15 | 41 | 427 | 42 | 429 | 1.47e-60 | 214 |
Msa0311460 | AT4G03230.1 | 32.530 | 415 | 225 | 15 | 41 | 427 | 42 | 429 | 1.47e-60 | 214 |
Msa0311460 | AT1G61460.1 | 31.034 | 435 | 243 | 10 | 1 | 428 | 1 | 385 | 1.44e-58 | 206 |
Msa0311460 | AT4G11900.10 | 31.448 | 442 | 250 | 16 | 25 | 427 | 24 | 451 | 1.88e-53 | 189 |
Msa0311460 | AT4G11900.5 | 31.448 | 442 | 250 | 16 | 25 | 427 | 24 | 451 | 1.88e-53 | 189 |
Msa0311460 | AT4G11900.2 | 31.448 | 442 | 250 | 16 | 25 | 427 | 24 | 451 | 5.72e-53 | 189 |
Msa0311460 | AT4G11900.3 | 31.448 | 442 | 250 | 16 | 25 | 427 | 24 | 451 | 5.72e-53 | 189 |
Msa0311460 | AT4G11900.6 | 31.448 | 442 | 250 | 16 | 25 | 427 | 24 | 451 | 5.83e-53 | 189 |
Msa0311460 | AT4G11900.4 | 31.448 | 442 | 250 | 16 | 25 | 427 | 24 | 451 | 5.83e-53 | 189 |
Msa0311460 | AT4G11900.7 | 31.448 | 442 | 250 | 16 | 25 | 427 | 24 | 451 | 6.11e-53 | 190 |
Msa0311460 | AT4G11900.1 | 31.448 | 442 | 250 | 16 | 25 | 427 | 24 | 451 | 1.92e-52 | 189 |
Msa0311460 | AT1G61360.2 | 30.790 | 367 | 230 | 8 | 94 | 447 | 4 | 359 | 3.99e-48 | 176 |
Msa0311460 | AT1G61360.3 | 30.790 | 367 | 230 | 8 | 94 | 447 | 4 | 359 | 3.99e-48 | 176 |
Msa0311460 | AT1G61360.4 | 30.790 | 367 | 230 | 8 | 94 | 447 | 4 | 359 | 3.99e-48 | 176 |
Msa0311460 | AT4G00340.1 | 31.768 | 362 | 221 | 11 | 36 | 386 | 26 | 372 | 9.14e-44 | 164 |
Msa0311460 | AT4G00340.2 | 31.768 | 362 | 221 | 11 | 36 | 386 | 26 | 372 | 9.75e-44 | 164 |
Msa0311460 | AT4G11900.8 | 30.556 | 396 | 226 | 15 | 67 | 427 | 1 | 382 | 1.97e-42 | 159 |
Msa0311460 | AT4G11900.9 | 30.556 | 396 | 226 | 15 | 67 | 427 | 1 | 382 | 4.71e-42 | 159 |
Msa0311460 | AT1G61420.3 | 32.014 | 278 | 172 | 7 | 159 | 428 | 1 | 269 | 5.89e-42 | 158 |
Msa0311460 | AT1G61420.5 | 32.014 | 278 | 172 | 7 | 159 | 428 | 1 | 269 | 6.23e-42 | 158 |
Msa0311460 | AT4G03230.5 | 30.423 | 355 | 194 | 14 | 99 | 427 | 30 | 357 | 1.76e-41 | 158 |
Msa0311460 | AT3G16030.1 | 29.581 | 453 | 279 | 12 | 7 | 438 | 6 | 439 | 1.85e-41 | 158 |
Msa0311460 | AT1G61490.3 | 29.032 | 279 | 179 | 6 | 159 | 428 | 1 | 269 | 7.66e-39 | 149 |
Msa0311460 | AT3G16030.3 | 28.798 | 441 | 272 | 12 | 7 | 424 | 6 | 427 | 5.04e-37 | 144 |
Msa0311460 | AT3G16030.8 | 28.798 | 441 | 272 | 12 | 7 | 424 | 6 | 427 | 5.04e-37 | 144 |
Msa0311460 | AT3G16030.5 | 28.798 | 441 | 272 | 12 | 7 | 424 | 6 | 427 | 5.04e-37 | 144 |
Msa0311460 | AT3G16030.4 | 28.798 | 441 | 272 | 12 | 7 | 424 | 6 | 427 | 1.20e-36 | 143 |
Msa0311460 | AT3G16030.7 | 28.798 | 441 | 272 | 12 | 7 | 424 | 6 | 427 | 1.26e-36 | 143 |
Msa0311460 | AT1G61390.2 | 30.035 | 283 | 177 | 6 | 159 | 428 | 1 | 275 | 3.31e-36 | 142 |
Msa0311460 | AT3G16030.6 | 28.798 | 441 | 272 | 12 | 7 | 424 | 6 | 427 | 3.84e-36 | 142 |
Msa0311460 | AT1G61370.2 | 30.451 | 266 | 163 | 6 | 177 | 428 | 19 | 276 | 6.29e-36 | 141 |
Msa0311460 | AT1G61380.2 | 30.389 | 283 | 176 | 6 | 159 | 428 | 1 | 275 | 2.07e-35 | 139 |
Msa0311460 | AT5G18470.1 | 28.671 | 429 | 223 | 18 | 6 | 401 | 10 | 388 | 1.81e-32 | 128 |
Msa0311460 | AT1G67520.1 | 37.931 | 174 | 101 | 3 | 29 | 196 | 25 | 197 | 4.65e-28 | 117 |
Msa0311460 | AT1G67520.2 | 37.931 | 174 | 101 | 3 | 29 | 196 | 25 | 197 | 5.77e-28 | 117 |
Msa0311460 | AT4G03230.2 | 26.197 | 355 | 181 | 13 | 99 | 427 | 30 | 329 | 8.00e-28 | 117 |
Msa0311460 | AT4G03230.6 | 26.197 | 355 | 181 | 13 | 99 | 427 | 30 | 329 | 8.00e-28 | 117 |
Msa0311460 | AT1G67520.6 | 37.931 | 174 | 101 | 3 | 29 | 196 | 32 | 204 | 8.50e-28 | 117 |
Msa0311460 | AT1G67520.3 | 37.931 | 174 | 101 | 3 | 29 | 196 | 25 | 197 | 9.16e-28 | 117 |
Msa0311460 | AT1G67520.4 | 37.931 | 174 | 101 | 3 | 29 | 196 | 25 | 197 | 1.01e-27 | 117 |
Msa0311460 | AT4G03230.7 | 29.496 | 278 | 153 | 11 | 174 | 427 | 14 | 272 | 2.04e-27 | 116 |
Msa0311460 | AT4G03230.3 | 29.496 | 278 | 153 | 11 | 174 | 427 | 6 | 264 | 2.18e-27 | 116 |
Msa0311460 | AT5G39370.1 | 42.308 | 130 | 71 | 3 | 67 | 194 | 1 | 128 | 1.66e-26 | 104 |
Msa0311460 | AT2G01780.1 | 29.060 | 234 | 132 | 7 | 79 | 285 | 48 | 274 | 4.81e-23 | 99.0 |
Msa0311460 | AT2G24620.1 | 33.121 | 157 | 96 | 3 | 163 | 313 | 1 | 154 | 8.63e-21 | 89.4 |
Msa0311460 | AT3G16030.2 | 26.316 | 323 | 211 | 8 | 141 | 450 | 4 | 312 | 1.34e-17 | 86.3 |
Msa0311460 | AT1G78850.1 | 30.964 | 197 | 112 | 7 | 9 | 188 | 5 | 194 | 5.62e-15 | 77.4 |
Msa0311460 | AT1G78860.1 | 23.181 | 371 | 227 | 13 | 47 | 386 | 57 | 400 | 6.43e-13 | 70.9 |
Msa0311460 | AT4G32300.1 | 23.059 | 425 | 248 | 22 | 7 | 396 | 4 | 384 | 2.66e-11 | 66.6 |
Find 81 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTGGGCCTCAAATTCATC+TGG | 0.250084 | 2_4:-6333761 | Msa0311460:CDS |
CCATTCAAACACTTGCAAAT+TGG | 0.254248 | 2_4:+6333170 | None:intergenic |
TCAGAAACATAGTTGTTAAA+TGG | 0.274020 | 2_4:+6334050 | None:intergenic |
TGAACATTCATTTGAGTTCT+TGG | 0.280355 | 2_4:-6333577 | Msa0311460:CDS |
TATGGTATTTGTGGTGCTTA+TGG | 0.296049 | 2_4:-6333215 | Msa0311460:CDS |
CTTGGTTGGAACTTCAAAAC+TGG | 0.299598 | 2_4:-6333602 | Msa0311460:CDS |
ACAAAGGTGATCCAGCTCTA+AGG | 0.302730 | 2_4:-6333427 | Msa0311460:CDS |
GATGTATTTAAGAAGTTTAT+AGG | 0.304313 | 2_4:-6333059 | Msa0311460:CDS |
TTCACATAAAGAATATTGTT+TGG | 0.327064 | 2_4:-6333880 | Msa0311460:CDS |
CTTACACATATCTTGGTATA+TGG | 0.334682 | 2_4:-6333913 | Msa0311460:CDS |
ATTGGTCTAGTGGATGTGTT+AGG | 0.346883 | 2_4:-6333109 | Msa0311460:CDS |
TTCCAACCAAGTTTCATTCC+TGG | 0.355870 | 2_4:+6333614 | None:intergenic |
CCAATTTGCAAGTGTTTGAA+TGG | 0.356619 | 2_4:-6333170 | Msa0311460:CDS |
AATTCAAAAGTTTGTAGAAA+TGG | 0.359169 | 2_4:-6333083 | Msa0311460:CDS |
TTCCAGCTCCTATCTTCCTT+AGG | 0.366381 | 2_4:+6329337 | None:intergenic |
TCACATAAAGAATATTGTTT+GGG | 0.367375 | 2_4:-6333879 | Msa0311460:CDS |
TTGGAGACTTATTTGATGTA+AGG | 0.368175 | 2_4:-6332890 | Msa0311460:CDS |
AACGTTGATGATCCTTCTTC+GGG | 0.370146 | 2_4:-6333551 | Msa0311460:CDS |
CCCAGAAAACATTTCCTTTG+TGG | 0.373510 | 2_4:+6333777 | None:intergenic |
AATTCCACTTACACATATCT+TGG | 0.373623 | 2_4:-6333920 | Msa0311460:CDS |
TCCAGCTCCTATCTTCCTTA+GGG | 0.377170 | 2_4:+6329338 | None:intergenic |
GAACGTTGATGATCCTTCTT+CGG | 0.380090 | 2_4:-6333552 | Msa0311460:CDS |
GCCAACACATTGGTAGCTTT+AGG | 0.389747 | 2_4:+6329400 | None:intergenic |
AATGGTTGTATTGCTTGGTT+TGG | 0.389804 | 2_4:-6332909 | Msa0311460:CDS |
AGCCAAGGAATATGCATGAT+TGG | 0.394471 | 2_4:-6333142 | Msa0311460:CDS |
CCTGGTAACAATGTATTAGA+AGG | 0.396848 | 2_4:+6333632 | None:intergenic |
AGAGTTTCAGCTTCAGAACT+AGG | 0.410180 | 2_4:-6332834 | Msa0311460:intron |
ACATGAAAGTCTACAGAATC+TGG | 0.411392 | 2_4:+6333026 | None:intergenic |
GGAATGATCATCGTTCGAAT+TGG | 0.420582 | 2_4:-6333277 | Msa0311460:CDS |
GTGTCTAGAAGCTGAGCTAC+TGG | 0.428408 | 2_4:+6333725 | None:intergenic |
GGCGACCAATGCGATGGTTA+TGG | 0.431579 | 2_4:-6333233 | Msa0311460:CDS |
ATGATTGGAAAATGCTTGAT+TGG | 0.434355 | 2_4:-6333127 | Msa0311460:CDS |
TTCCAATCATGCATATTCCT+TGG | 0.437028 | 2_4:+6333140 | None:intergenic |
GTGGTAATGGTTGTATTGCT+TGG | 0.442914 | 2_4:-6332914 | Msa0311460:CDS |
GATGATTTGTGGTGGAGTTA+TGG | 0.445957 | 2_4:+6334006 | None:intergenic |
TGCGATGGTTATGGTATTTG+TGG | 0.450840 | 2_4:-6333224 | Msa0311460:CDS |
TGCACGCCCAGATGAATTTG+AGG | 0.450970 | 2_4:+6333754 | None:intergenic |
CCTTCTAATACATTGTTACC+AGG | 0.458867 | 2_4:-6333632 | Msa0311460:CDS |
TGGTTTCCCCTAAGGAAGAT+AGG | 0.462945 | 2_4:-6329345 | Msa0311460:CDS |
TGGAGACTTATTTGATGTAA+GGG | 0.466354 | 2_4:-6332889 | Msa0311460:CDS |
TGGTTACCAGTGATGATTTG+TGG | 0.474376 | 2_4:+6333995 | None:intergenic |
GACTTAAGTGGTTTCCCCTA+AGG | 0.479205 | 2_4:-6329353 | Msa0311460:CDS |
TACCAGGAATGAAACTTGGT+TGG | 0.482534 | 2_4:-6333616 | Msa0311460:CDS |
CAAAGGTGATCCAGCTCTAA+GGG | 0.482977 | 2_4:-6333426 | Msa0311460:CDS |
GATATAAATGCTAGTGGTAA+TGG | 0.486965 | 2_4:-6332927 | Msa0311460:CDS |
ACATTAGCATTCAACAATGA+TGG | 0.491626 | 2_4:-6333818 | Msa0311460:CDS |
CCGAAGTGGACCATGGTATG+TGG | 0.491812 | 2_4:-6333456 | Msa0311460:CDS |
GTGAAGGTGAAATTAGTGTT+TGG | 0.494631 | 2_4:+6333975 | None:intergenic |
AAGATAGGAGCTGGAACGCT+TGG | 0.508072 | 2_4:-6329330 | Msa0311460:CDS |
TCTGGGCCTCAAATTCATCT+GGG | 0.512105 | 2_4:-6333760 | Msa0311460:CDS |
CCCCTAAGGAAGATAGGAGC+TGG | 0.519050 | 2_4:-6329339 | Msa0311460:CDS |
TATACCAAGATATGTGTAAG+TGG | 0.525860 | 2_4:+6333916 | None:intergenic |
AGCTAACAATGGGACTTAAG+TGG | 0.533746 | 2_4:-6329365 | Msa0311460:CDS |
ACATCGATGAAGCTAACAAT+GGG | 0.540034 | 2_4:-6329375 | Msa0311460:CDS |
TTGTTACCAGGAATGAAACT+TGG | 0.549768 | 2_4:-6333620 | Msa0311460:CDS |
TAACTATATTCACCCGAAGA+AGG | 0.555124 | 2_4:+6333539 | None:intergenic |
GTACCATTGTGATTAAGAAG+TGG | 0.555990 | 2_4:+6333839 | None:intergenic |
GTAAGGGAGGATTCTGTGAA+TGG | 0.561378 | 2_4:-6332873 | Msa0311460:CDS |
TTGGTCTAGTGGATGTGTTA+GGG | 0.563396 | 2_4:-6333108 | Msa0311460:CDS |
TCCTAAAGCTACCAATGTGT+TGG | 0.563511 | 2_4:-6329401 | Msa0311460:CDS |
GTTTAATTCAGCATTTCACA+TGG | 0.571667 | 2_4:-6333298 | Msa0311460:CDS |
GAATTAAACCAGATTCACTA+AGG | 0.572755 | 2_4:+6333312 | None:intergenic |
AGACTTATTTGATGTAAGGG+AGG | 0.575588 | 2_4:-6332886 | Msa0311460:CDS |
CTCATTATTCTTAACCACAA+AGG | 0.579574 | 2_4:-6333791 | Msa0311460:CDS |
ACTCCACCACAAATCATCAC+TGG | 0.581459 | 2_4:-6334001 | Msa0311460:CDS |
AAAATGCTTGATTGGTCTAG+TGG | 0.583365 | 2_4:-6333119 | Msa0311460:CDS |
CCACATACCATGGTCCACTT+CGG | 0.600021 | 2_4:+6333456 | None:intergenic |
AAATACCATAACCATCGCAT+TGG | 0.603112 | 2_4:+6333228 | None:intergenic |
TTGTATTGTTCCACATACCA+TGG | 0.604052 | 2_4:+6333446 | None:intergenic |
GTAGCTCAGCTTCTAGACAC+TGG | 0.604149 | 2_4:-6333722 | Msa0311460:CDS |
TTACCAGTGATGATTTGTGG+TGG | 0.612380 | 2_4:+6333998 | None:intergenic |
AAACTTGATATAAATGCTAG+TGG | 0.617738 | 2_4:-6332933 | Msa0311460:CDS |
CCAGCTCCTATCTTCCTTAG+GGG | 0.623657 | 2_4:+6329339 | None:intergenic |
GACATCGATGAAGCTAACAA+TGG | 0.627994 | 2_4:-6329376 | Msa0311460:CDS |
GTTCAAGGCGACCAATGCGA+TGG | 0.628666 | 2_4:-6333239 | Msa0311460:CDS |
ATCGATGTCAGCCAACACAT+TGG | 0.634823 | 2_4:+6329390 | None:intergenic |
AAACCACTTCTTAATCACAA+TGG | 0.664935 | 2_4:-6333842 | Msa0311460:CDS |
TGGTATGTGGAACAATACAA+AGG | 0.690585 | 2_4:-6333443 | Msa0311460:CDS |
CATTAACATTGATCAATGTG+AGG | 0.698074 | 2_4:-6332994 | Msa0311460:CDS |
AAAAGCTGAGGAAGTCCACG+TGG | 0.713817 | 2_4:+6333506 | None:intergenic |
AGTTATAGTGTTGATCCACG+TGG | 0.736693 | 2_4:-6333521 | Msa0311460:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATATTTTAGTAGAAAAAT+TGG | - | chr2_4:6331692-6331711 | Msa0311460:intron | 10.0% |
!! | CAAAAAATAACTTAAAAATA+GGG | + | chr2_4:6332281-6332300 | None:intergenic | 10.0% |
!! | ACAAAAAATAACTTAAAAAT+AGG | + | chr2_4:6332282-6332301 | None:intergenic | 10.0% |
!! | TTTACATAATATTAGAATTA+AGG | + | chr2_4:6332711-6332730 | None:intergenic | 10.0% |
!!! | TATTGTTTGAATAAATTTTT+GGG | - | chr2_4:6333698-6333717 | Msa0311460:CDS | 10.0% |
!! | ATATTTACTATTTCATTTAT+TGG | + | chr2_4:6333815-6333834 | None:intergenic | 10.0% |
!!! | ATAATATTTTTTTTCTGTTG+TGG | - | chr2_4:6330714-6330733 | Msa0311460:intron | 15.0% |
!!! | AATCGAAATATTTGATTTTT+TGG | - | chr2_4:6332147-6332166 | Msa0311460:intron | 15.0% |
!!! | GAAAAGTTGATATATTTATA+GGG | + | chr2_4:6332190-6332209 | None:intergenic | 15.0% |
!!! | TGAAAAGTTGATATATTTAT+AGG | + | chr2_4:6332191-6332210 | None:intergenic | 15.0% |
!! | TAGTGATTGAAAAATTTATA+AGG | + | chr2_4:6332250-6332269 | None:intergenic | 15.0% |
!!! | AAATTTTTCATCTTCATTTT+TGG | + | chr2_4:6332544-6332563 | None:intergenic | 15.0% |
!!! | AAATTGAAGAAAAATTTTAG+AGG | - | chr2_4:6332576-6332595 | Msa0311460:intron | 15.0% |
!!! | AATTGAAGAAAAATTTTAGA+GGG | - | chr2_4:6332577-6332596 | Msa0311460:intron | 15.0% |
!!! | ATTTTTAAGATATTTGCATA+GGG | - | chr2_4:6332905-6332924 | Msa0311460:CDS | 15.0% |
!!! | ATTAAATTTTTAGTTTAACG+TGG | - | chr2_4:6333099-6333118 | Msa0311460:CDS | 15.0% |
!! | TATCGATAGAAAATATTTAA+AGG | + | chr2_4:6333362-6333381 | None:intergenic | 15.0% |
!!! | AACCAAAATTCTAAATTTTT+CGG | + | chr2_4:6333481-6333500 | None:intergenic | 15.0% |
!! | AAAATAATTCAAACTTTGAA+TGG | - | chr2_4:6333621-6333640 | Msa0311460:CDS | 15.0% |
!!! | CTTCAAATATTTTACATATT+TGG | + | chr2_4:6333675-6333694 | None:intergenic | 15.0% |
!! | CAAATATGTAAAATATTTGA+AGG | - | chr2_4:6333673-6333692 | Msa0311460:CDS | 15.0% |
!!! | CTATTGTTTGAATAAATTTT+TGG | - | chr2_4:6333697-6333716 | Msa0311460:CDS | 15.0% |
!!! | ATTGTTTGAATAAATTTTTG+GGG | - | chr2_4:6333699-6333718 | Msa0311460:CDS | 15.0% |
!! | CTAAATTGAATATATTTGTA+AGG | - | chr2_4:6333731-6333750 | Msa0311460:CDS | 15.0% |
!! | ATATTAAAATAGATTGTCTT+TGG | + | chr2_4:6333774-6333793 | None:intergenic | 15.0% |
!! | TTCACATAAAGAATATTGTT+TGG | - | chr2_4:6329528-6329547 | Msa0311460:intron | 20.0% |
!! | TCACATAAAGAATATTGTTT+GGG | - | chr2_4:6329529-6329548 | Msa0311460:intron | 20.0% |
!! | TCAGAATCAAAAACAAAAAT+CGG | + | chr2_4:6330025-6330044 | None:intergenic | 20.0% |
!! | AATTCAAAAGTTTGTAGAAA+TGG | - | chr2_4:6330325-6330344 | Msa0311460:intron | 20.0% |
!! | GATGTATTTAAGAAGTTTAT+AGG | - | chr2_4:6330349-6330368 | Msa0311460:intron | 20.0% |
!! | ATTAAGTATTTAAATTGGGA+CGG | - | chr2_4:6331753-6331772 | Msa0311460:intron | 20.0% |
!! | GAATATAGTTAATACATCAT+TGG | - | chr2_4:6331861-6331880 | Msa0311460:intron | 20.0% |
!!! | TAAGCAAAAATTCATCTTTT+AGG | + | chr2_4:6331989-6332008 | None:intergenic | 20.0% |
!!! | AATTTTTCAATCACTACTTT+TGG | - | chr2_4:6332254-6332273 | Msa0311460:intron | 20.0% |
!!! | ATGAAGATGAAAAATTTTGT+AGG | - | chr2_4:6332547-6332566 | Msa0311460:intron | 20.0% |
!!! | TGAAGATGAAAAATTTTGTA+GGG | - | chr2_4:6332548-6332567 | Msa0311460:intron | 20.0% |
!!! | GATTTTTAAGATATTTGCAT+AGG | - | chr2_4:6332904-6332923 | Msa0311460:CDS | 20.0% |
!! | TTTAACGTGGAAAATAATTA+GGG | - | chr2_4:6333112-6333131 | Msa0311460:CDS | 20.0% |
!!! | ACCAAAATTCTAAATTTTTC+GGG | + | chr2_4:6333480-6333499 | None:intergenic | 20.0% |
!!! | AGAATGAATTTTTAAGCTTT+TGG | + | chr2_4:6333528-6333547 | None:intergenic | 20.0% |
!!! | TTGTTTGAATAAATTTTTGG+GGG | - | chr2_4:6333700-6333719 | Msa0311460:CDS | 20.0% |
!! | TATTAAATGGTAATAACACA+AGG | - | chr2_4:6333835-6333854 | Msa0311460:CDS | 20.0% |
! | TCAGAAACATAGTTGTTAAA+TGG | + | chr2_4:6329361-6329380 | None:intergenic | 25.0% |
!! | TATGTGTAAGTGGAATTTTT+AGG | + | chr2_4:6329485-6329504 | None:intergenic | 25.0% |
!!! | ACAAAAATCGGTTTGAAAAT+TGG | + | chr2_4:6330013-6330032 | None:intergenic | 25.0% |
!! | TTTTCTGAGTTTAATGTTCA+AGG | - | chr2_4:6330154-6330173 | Msa0311460:intron | 25.0% |
! | AAACTTGATATAAATGCTAG+TGG | - | chr2_4:6330475-6330494 | Msa0311460:intron | 25.0% |
! | ACTAGGTATGAGTATATATA+TGG | - | chr2_4:6330591-6330610 | Msa0311460:intron | 25.0% |
! | TCACATTAATGATTCTTTGT+TGG | - | chr2_4:6330638-6330657 | Msa0311460:intron | 25.0% |
!!! | TGTGGTTGATAATTAAGAAA+TGG | - | chr2_4:6330830-6330849 | Msa0311460:intron | 25.0% |
! | GGTAAACTAAAGATTTATTG+TGG | - | chr2_4:6330865-6330884 | Msa0311460:intron | 25.0% |
! | ATACTAATCAAAGAAGACTA+TGG | + | chr2_4:6330934-6330953 | None:intergenic | 25.0% |
! | AAGAGTTAATGTTAGTATTG+AGG | - | chr2_4:6331254-6331273 | Msa0311460:intron | 25.0% |
!! | AGAGTTAATGTTAGTATTGA+GGG | - | chr2_4:6331255-6331274 | Msa0311460:intron | 25.0% |
! | ATCATATAATATGAGACAGA+TGG | + | chr2_4:6331542-6331561 | None:intergenic | 25.0% |
!! | TTTTTGCTTATAATAGTGAC+TGG | - | chr2_4:6331999-6332018 | Msa0311460:intron | 25.0% |
! | GACAAAAAGTAACAATTCTA+AGG | - | chr2_4:6332038-6332057 | Msa0311460:intron | 25.0% |
!!! | AGTTGAAGGAAATTTTTAGA+GGG | + | chr2_4:6332221-6332240 | None:intergenic | 25.0% |
!!! | AAGTTGAAGGAAATTTTTAG+AGG | + | chr2_4:6332222-6332241 | None:intergenic | 25.0% |
! | TTATAAGGACTAAAAGTTGA+AGG | + | chr2_4:6332235-6332254 | None:intergenic | 25.0% |
!!! | AAATTTTAGAGGGACTAAAA+CGG | - | chr2_4:6332587-6332606 | Msa0311460:intron | 25.0% |
!! | TCAAGGGTTAAATATGTTTT+TGG | + | chr2_4:6332635-6332654 | None:intergenic | 25.0% |
! | AATATTAGAATTAAGGTCTC+CGG | + | chr2_4:6332704-6332723 | None:intergenic | 25.0% |
! | GTTTAACGTGGAAAATAATT+AGG | - | chr2_4:6333111-6333130 | Msa0311460:CDS | 25.0% |
!!! | TTTAGTTGAGGTTTGTTTTT+TGG | - | chr2_4:6333139-6333158 | Msa0311460:CDS | 25.0% |
! | CATAATATATGCAATGTCTA+GGG | + | chr2_4:6333183-6333202 | None:intergenic | 25.0% |
! | ACATAATATATGCAATGTCT+AGG | + | chr2_4:6333184-6333203 | None:intergenic | 25.0% |
!!! | ACTTCTAGAATATATCCAAT+GGG | + | chr2_4:6333261-6333280 | None:intergenic | 25.0% |
!!! | TACTTCTAGAATATATCCAA+TGG | + | chr2_4:6333262-6333281 | None:intergenic | 25.0% |
!!! | TCCCGAAAAATTTAGAATTT+TGG | - | chr2_4:6333476-6333495 | Msa0311460:CDS | 25.0% |
!! | AAATGAGTTGACGTAAAAAT+AGG | - | chr2_4:6333647-6333666 | Msa0311460:CDS | 25.0% |
!! | AATGAGTTGACGTAAAAATA+GGG | - | chr2_4:6333648-6333667 | Msa0311460:CDS | 25.0% |
!! | TTTAATATGTCATAGTCTTG+TGG | - | chr2_4:6333786-6333805 | Msa0311460:CDS | 25.0% |
! | AAGTTGTTAGTTCATTTGTT+AGG | - | chr2_4:6333861-6333880 | Msa0311460:CDS | 25.0% |
!! | AGTTGTTAGTTCATTTGTTA+GGG | - | chr2_4:6333862-6333881 | Msa0311460:CDS | 25.0% |
!! | GTTTTATCCAATAAATTTGC+AGG | - | chr2_4:6333979-6333998 | Msa0311460:CDS | 25.0% |
!! | ATGGTATTTTCTGCTTTTGA+AGG | + | chr2_4:6329386-6329405 | None:intergenic | 30.0% |
! | CCAAGTTCAAAATTTTGTGA+AGG | + | chr2_4:6329452-6329471 | None:intergenic | 30.0% |
! | CCTTCACAAAATTTTGAACT+TGG | - | chr2_4:6329449-6329468 | Msa0311460:intron | 30.0% |
AATTCCACTTACACATATCT+TGG | - | chr2_4:6329488-6329507 | Msa0311460:intron | 30.0% | |
TATACCAAGATATGTGTAAG+TGG | + | chr2_4:6329495-6329514 | None:intergenic | 30.0% | |
CTTACACATATCTTGGTATA+TGG | - | chr2_4:6329495-6329514 | Msa0311460:intron | 30.0% | |
AAACCACTTCTTAATCACAA+TGG | - | chr2_4:6329566-6329585 | Msa0311460:intron | 30.0% | |
ACATTAGCATTCAACAATGA+TGG | - | chr2_4:6329590-6329609 | Msa0311460:intron | 30.0% | |
CTCATTATTCTTAACCACAA+AGG | - | chr2_4:6329617-6329636 | Msa0311460:intron | 30.0% | |
! | AAAACTCTGACGAAATTTTG+TGG | - | chr2_4:6329738-6329757 | Msa0311460:intron | 30.0% |
! | TGAACATTCATTTGAGTTCT+TGG | - | chr2_4:6329831-6329850 | Msa0311460:intron | 30.0% |
! | AAGAAGAAAATTTTCCGAAG+TGG | - | chr2_4:6329938-6329957 | Msa0311460:intron | 30.0% |
! | AGATTTTTCCTTAGTGAATC+TGG | - | chr2_4:6330088-6330107 | Msa0311460:intron | 30.0% |
GAATTAAACCAGATTCACTA+AGG | + | chr2_4:6330099-6330118 | None:intergenic | 30.0% | |
GTTTAATTCAGCATTTCACA+TGG | - | chr2_4:6330110-6330129 | Msa0311460:intron | 30.0% | |
ATGATTGGAAAATGCTTGAT+TGG | - | chr2_4:6330281-6330300 | Msa0311460:intron | 30.0% | |
CATTAACATTGATCAATGTG+AGG | - | chr2_4:6330414-6330433 | Msa0311460:intron | 30.0% | |
GATATAAATGCTAGTGGTAA+TGG | - | chr2_4:6330481-6330500 | Msa0311460:intron | 30.0% | |
TTGGAGACTTATTTGATGTA+AGG | - | chr2_4:6330518-6330537 | Msa0311460:intron | 30.0% | |
TGGAGACTTATTTGATGTAA+GGG | - | chr2_4:6330519-6330538 | Msa0311460:intron | 30.0% | |
CAAATGTTGAGAGAAACAAA+AGG | - | chr2_4:6330746-6330765 | Msa0311460:intron | 30.0% | |
AAGAAATGGAGAAGAAATAG+AGG | - | chr2_4:6330844-6330863 | Msa0311460:intron | 30.0% | |
!!! | GATATTTTTAGGGACTATTG+TGG | - | chr2_4:6331347-6331366 | Msa0311460:intron | 30.0% |
!! | AGGAAGTACTAAACTAATCA+TGG | - | chr2_4:6331776-6331795 | Msa0311460:intron | 30.0% |
GGAAAGTTGGCATATTTATA+AGG | - | chr2_4:6332608-6332627 | Msa0311460:intron | 30.0% | |
ATATTAGAATTAAGGTCTCC+GGG | + | chr2_4:6332703-6332722 | None:intergenic | 30.0% | |
! | CGAGATGCATTGATATTATA+AGG | + | chr2_4:6333079-6333098 | None:intergenic | 30.0% |
AATTAGGGCTAATTTAGTTG+AGG | - | chr2_4:6333127-6333146 | Msa0311460:CDS | 30.0% | |
GACTAAACCTGCAAATTTAT+TGG | + | chr2_4:6333989-6334008 | None:intergenic | 30.0% | |
GTGAAGGTGAAATTAGTGTT+TGG | + | chr2_4:6329436-6329455 | None:intergenic | 35.0% | |
GTACCATTGTGATTAAGAAG+TGG | + | chr2_4:6329572-6329591 | None:intergenic | 35.0% | |
! | ACCACAAAGGAAATGTTTTC+TGG | - | chr2_4:6329630-6329649 | Msa0311460:intron | 35.0% |
! | CCACAAAGGAAATGTTTTCT+GGG | - | chr2_4:6329631-6329650 | Msa0311460:intron | 35.0% |
CCTGGTAACAATGTATTAGA+AGG | + | chr2_4:6329779-6329798 | None:intergenic | 35.0% | |
CCTTCTAATACATTGTTACC+AGG | - | chr2_4:6329776-6329795 | Msa0311460:intron | 35.0% | |
TTGTTACCAGGAATGAAACT+TGG | - | chr2_4:6329788-6329807 | Msa0311460:intron | 35.0% | |
TAACTATATTCACCCGAAGA+AGG | + | chr2_4:6329872-6329891 | None:intergenic | 35.0% | |
!! | CCTTTTTGAAGAAAAAGCTG+AGG | + | chr2_4:6329917-6329936 | None:intergenic | 35.0% |
!! | CCTCAGCTTTTTCTTCAAAA+AGG | - | chr2_4:6329914-6329933 | Msa0311460:intron | 35.0% |
TTGTATTGTTCCACATACCA+TGG | + | chr2_4:6329965-6329984 | None:intergenic | 35.0% | |
TGGTATGTGGAACAATACAA+AGG | - | chr2_4:6329965-6329984 | Msa0311460:intron | 35.0% | |
AAATACCATAACCATCGCAT+TGG | + | chr2_4:6330183-6330202 | None:intergenic | 35.0% | |
TATGGTATTTGTGGTGCTTA+TGG | - | chr2_4:6330193-6330212 | Msa0311460:intron | 35.0% | |
CCATTCAAACACTTGCAAAT+TGG | + | chr2_4:6330241-6330260 | None:intergenic | 35.0% | |
CCAATTTGCAAGTGTTTGAA+TGG | - | chr2_4:6330238-6330257 | Msa0311460:intron | 35.0% | |
TTCCAATCATGCATATTCCT+TGG | + | chr2_4:6330271-6330290 | None:intergenic | 35.0% | |
!! | AAAATGCTTGATTGGTCTAG+TGG | - | chr2_4:6330289-6330308 | Msa0311460:intron | 35.0% |
ACATGAAAGTCTACAGAATC+TGG | + | chr2_4:6330385-6330404 | None:intergenic | 35.0% | |
AATGGTTGTATTGCTTGGTT+TGG | - | chr2_4:6330499-6330518 | Msa0311460:intron | 35.0% | |
AGACTTATTTGATGTAAGGG+AGG | - | chr2_4:6330522-6330541 | Msa0311460:intron | 35.0% | |
TGCTGAGGTAATAATAGTAG+AGG | + | chr2_4:6330809-6330828 | None:intergenic | 35.0% | |
CTATTATTACCTCAGCATTG+TGG | - | chr2_4:6330812-6330831 | Msa0311460:intron | 35.0% | |
AATTATCAACCACAATGCTG+AGG | + | chr2_4:6330824-6330843 | None:intergenic | 35.0% | |
AAGTATTTAAATTGGGACGG+AGG | - | chr2_4:6331756-6331775 | Msa0311460:intron | 35.0% | |
! | TAATCATGGCCTTTATTTGC+AGG | - | chr2_4:6331790-6331809 | Msa0311460:intron | 35.0% |
AACCATACTCCTGCAAATAA+AGG | + | chr2_4:6331802-6331821 | None:intergenic | 35.0% | |
TGCTTATAATAGTGACTGGA+TGG | - | chr2_4:6332003-6332022 | Msa0311460:intron | 35.0% | |
!! | ATCCTTAAAGAGTGTCATAG+GGG | + | chr2_4:6332080-6332099 | None:intergenic | 35.0% |
!! | GATCCTTAAAGAGTGTCATA+GGG | + | chr2_4:6332081-6332100 | None:intergenic | 35.0% |
!! | TGATCCTTAAAGAGTGTCAT+AGG | + | chr2_4:6332082-6332101 | None:intergenic | 35.0% |
!! | AGAATACTTAAAGAGTGTCC+CGG | - | chr2_4:6332682-6332701 | Msa0311460:intron | 35.0% |
CCATCATAAGTGATGAAAGT+TGG | + | chr2_4:6332807-6332826 | None:intergenic | 35.0% | |
CCAACTTTCATCACTTATGA+TGG | - | chr2_4:6332804-6332823 | Msa0311460:intron | 35.0% | |
!!! | AGTTGAGGTTTGTTTTTTGG+TGG | - | chr2_4:6333142-6333161 | Msa0311460:CDS | 35.0% |
!!! | TTTGTTTTTTGGTGGTGTCT+GGG | - | chr2_4:6333150-6333169 | Msa0311460:CDS | 35.0% |
TGAGCTTAACTCAATTGGTA+AGG | + | chr2_4:6333212-6333231 | None:intergenic | 35.0% | |
TACCAATTGAGTTAAGCTCA+CGG | - | chr2_4:6333212-6333231 | Msa0311460:CDS | 35.0% | |
TAGTTGAGGTTTAAACCCAT+TGG | - | chr2_4:6333243-6333262 | Msa0311460:CDS | 35.0% | |
!! | ATTGACTTGACCAACTCAAA+TGG | + | chr2_4:6333895-6333914 | None:intergenic | 35.0% |
ACATCGATGAAGCTAACAAT+GGG | - | chr2_4:6334033-6334052 | Msa0311460:CDS | 35.0% | |
! | GATGATTTGTGGTGGAGTTA+TGG | + | chr2_4:6329405-6329424 | None:intergenic | 40.0% |
! | TTACCAGTGATGATTTGTGG+TGG | + | chr2_4:6329413-6329432 | None:intergenic | 40.0% |
TGGTTACCAGTGATGATTTG+TGG | + | chr2_4:6329416-6329435 | None:intergenic | 40.0% | |
CCCAGAAAACATTTCCTTTG+TGG | + | chr2_4:6329634-6329653 | None:intergenic | 40.0% | |
TACCAGGAATGAAACTTGGT+TGG | - | chr2_4:6329792-6329811 | Msa0311460:intron | 40.0% | |
TTCCAACCAAGTTTCATTCC+TGG | + | chr2_4:6329797-6329816 | None:intergenic | 40.0% | |
CTTGGTTGGAACTTCAAAAC+TGG | - | chr2_4:6329806-6329825 | Msa0311460:intron | 40.0% | |
!! | GAACGTTGATGATCCTTCTT+CGG | - | chr2_4:6329856-6329875 | Msa0311460:intron | 40.0% |
!! | AACGTTGATGATCCTTCTTC+GGG | - | chr2_4:6329857-6329876 | Msa0311460:intron | 40.0% |
!! | AGTTATAGTGTTGATCCACG+TGG | - | chr2_4:6329887-6329906 | Msa0311460:intron | 40.0% |
! | AAATTTTCCGAAGTGGACCA+TGG | - | chr2_4:6329945-6329964 | Msa0311460:intron | 40.0% |
! | ATTGGATTTTCCCTTAGAGC+TGG | + | chr2_4:6329995-6330014 | None:intergenic | 40.0% |
GGAATGATCATCGTTCGAAT+TGG | - | chr2_4:6330131-6330150 | Msa0311460:intron | 40.0% | |
TGCGATGGTTATGGTATTTG+TGG | - | chr2_4:6330184-6330203 | Msa0311460:intron | 40.0% | |
!!! | GTTTGAATGGTTTTGAGCCA+AGG | - | chr2_4:6330251-6330270 | Msa0311460:intron | 40.0% |
AGCCAAGGAATATGCATGAT+TGG | - | chr2_4:6330266-6330285 | Msa0311460:intron | 40.0% | |
! | ATTGGTCTAGTGGATGTGTT+AGG | - | chr2_4:6330299-6330318 | Msa0311460:intron | 40.0% |
! | TTGGTCTAGTGGATGTGTTA+GGG | - | chr2_4:6330300-6330319 | Msa0311460:intron | 40.0% |
!! | GTGGTAATGGTTGTATTGCT+TGG | - | chr2_4:6330494-6330513 | Msa0311460:intron | 40.0% |
AGAGTTTCAGCTTCAGAACT+AGG | - | chr2_4:6330574-6330593 | Msa0311460:intron | 40.0% | |
TACCCCTATGACACTCTTTA+AGG | - | chr2_4:6332075-6332094 | Msa0311460:intron | 40.0% | |
CACTTCGATGAGAAAGTCAA+AGG | - | chr2_4:6332773-6332792 | Msa0311460:intron | 40.0% | |
ATAGGGAAGATGTTCACACA+TGG | - | chr2_4:6332858-6332877 | Msa0311460:CDS | 40.0% | |
!!! | GTTTGTTTTTTGGTGGTGTC+TGG | - | chr2_4:6333149-6333168 | Msa0311460:CDS | 40.0% |
!!! | TTGTTTTTTGGTGGTGTCTG+GGG | - | chr2_4:6333151-6333170 | Msa0311460:CDS | 40.0% |
ACCAATTGAGTTAAGCTCAC+GGG | - | chr2_4:6333213-6333232 | Msa0311460:CDS | 40.0% | |
GGGTCATTAACCATTTGAGT+TGG | - | chr2_4:6333882-6333901 | Msa0311460:CDS | 40.0% | |
TCCTAAAGCTACCAATGTGT+TGG | - | chr2_4:6334007-6334026 | Msa0311460:CDS | 40.0% | |
GACATCGATGAAGCTAACAA+TGG | - | chr2_4:6334032-6334051 | Msa0311460:CDS | 40.0% | |
AGCTAACAATGGGACTTAAG+TGG | - | chr2_4:6334043-6334062 | Msa0311460:CDS | 40.0% | |
ACTCCACCACAAATCATCAC+TGG | - | chr2_4:6329407-6329426 | Msa0311460:CDS | 45.0% | |
TTCTGGGCCTCAAATTCATC+TGG | - | chr2_4:6329647-6329666 | Msa0311460:intron | 45.0% | |
TCTGGGCCTCAAATTCATCT+GGG | - | chr2_4:6329648-6329667 | Msa0311460:intron | 45.0% | |
ACAAAGGTGATCCAGCTCTA+AGG | - | chr2_4:6329981-6330000 | Msa0311460:intron | 45.0% | |
! | CAAAGGTGATCCAGCTCTAA+GGG | - | chr2_4:6329982-6330001 | Msa0311460:intron | 45.0% |
GTAAGGGAGGATTCTGTGAA+TGG | - | chr2_4:6330535-6330554 | Msa0311460:intron | 45.0% | |
AGCTGCATACAGAGGTAAAG+AGG | + | chr2_4:6330973-6330992 | None:intergenic | 45.0% | |
GTCTCTTTAGCTGCATACAG+AGG | + | chr2_4:6330981-6331000 | None:intergenic | 45.0% | |
CTGTATGCAGCTAAAGAGAC+AGG | - | chr2_4:6330981-6331000 | Msa0311460:intron | 45.0% | |
! | GGCCTTTATTTGCAGGAGTA+TGG | - | chr2_4:6331797-6331816 | Msa0311460:intron | 45.0% |
GAGGGACTAAAACGGAAAGT+TGG | - | chr2_4:6332595-6332614 | Msa0311460:intron | 45.0% | |
ACTTGTCTCTGCAGTTGCAT+AGG | - | chr2_4:6332840-6332859 | Msa0311460:CDS | 45.0% | |
CTTGTCTCTGCAGTTGCATA+GGG | - | chr2_4:6332841-6332860 | Msa0311460:CDS | 45.0% | |
CCAATTGAGTTAAGCTCACG+GGG | - | chr2_4:6333214-6333233 | Msa0311460:CDS | 45.0% | |
! | GCCAACACATTGGTAGCTTT+AGG | + | chr2_4:6334011-6334030 | None:intergenic | 45.0% |
ATCGATGTCAGCCAACACAT+TGG | + | chr2_4:6334021-6334040 | None:intergenic | 45.0% | |
GACTTAAGTGGTTTCCCCTA+AGG | - | chr2_4:6334055-6334074 | Msa0311460:CDS | 45.0% | |
TGGTTTCCCCTAAGGAAGAT+AGG | - | chr2_4:6334063-6334082 | Msa0311460:CDS | 45.0% | |
TCCAGCTCCTATCTTCCTTA+GGG | + | chr2_4:6334073-6334092 | None:intergenic | 45.0% | |
TTCCAGCTCCTATCTTCCTT+AGG | + | chr2_4:6334074-6334093 | None:intergenic | 45.0% | |
!!! | TATAAAATTTTGATATTTTT+AGG | - | chr2_4:6331336-6331355 | Msa0311460:intron | 5.0% |
!!! | ATAAAATTTTGATATTTTTA+GGG | - | chr2_4:6331337-6331356 | Msa0311460:intron | 5.0% |
!! | TTTAAATTAAGTATTTAAAT+TGG | - | chr2_4:6331748-6331767 | Msa0311460:intron | 5.0% |
!! | TTAAATTAAGTATTTAAATT+GGG | - | chr2_4:6331749-6331768 | Msa0311460:intron | 5.0% |
!!! | ATGAATTTTTATATTTTTTT+CGG | + | chr2_4:6332398-6332417 | None:intergenic | 5.0% |
!!! | TTATTATTTTAAAAAATCAA+GGG | + | chr2_4:6332651-6332670 | None:intergenic | 5.0% |
!!! | ATTATTATTTTAAAAAATCA+AGG | + | chr2_4:6332652-6332671 | None:intergenic | 5.0% |
!! | AAATAGTAAATATTATTAAA+TGG | - | chr2_4:6333822-6333841 | Msa0311460:CDS | 5.0% |
TGCACGCCCAGATGAATTTG+AGG | + | chr2_4:6329657-6329676 | None:intergenic | 50.0% | |
GTGTCTAGAAGCTGAGCTAC+TGG | + | chr2_4:6329686-6329705 | None:intergenic | 50.0% | |
GTAGCTCAGCTTCTAGACAC+TGG | - | chr2_4:6329686-6329705 | Msa0311460:intron | 50.0% | |
AAAAGCTGAGGAAGTCCACG+TGG | + | chr2_4:6329905-6329924 | None:intergenic | 50.0% | |
CCACATACCATGGTCCACTT+CGG | + | chr2_4:6329955-6329974 | None:intergenic | 50.0% | |
AGAGAGAGAGAGAGAGAGAG+AGG | - | chr2_4:6331455-6331474 | Msa0311460:intron | 50.0% | |
GAGAGAGAGAGAGAGAGAGA+GGG | - | chr2_4:6331454-6331473 | Msa0311460:intron | 50.0% | |
CCCCGTGAGCTTAACTCAAT+TGG | + | chr2_4:6333217-6333236 | None:intergenic | 50.0% | |
TCACGGGGACACTTTAGTTG+AGG | - | chr2_4:6333229-6333248 | Msa0311460:CDS | 50.0% | |
CCAGCTCCTATCTTCCTTAG+GGG | + | chr2_4:6334072-6334091 | None:intergenic | 50.0% | |
AAGATAGGAGCTGGAACGCT+TGG | - | chr2_4:6334078-6334097 | Msa0311460:CDS | 50.0% | |
CCGAAGTGGACCATGGTATG+TGG | - | chr2_4:6329952-6329971 | Msa0311460:intron | 55.0% | |
GTTCAAGGCGACCAATGCGA+TGG | - | chr2_4:6330169-6330188 | Msa0311460:intron | 55.0% | |
GGCGACCAATGCGATGGTTA+TGG | - | chr2_4:6330175-6330194 | Msa0311460:intron | 55.0% | |
AGAGAGAGAGAGAGAGAGGG+AGG | - | chr2_4:6331465-6331484 | Msa0311460:intron | 55.0% | |
GAGAGAGAGAGAGAGAGGGA+GGG | - | chr2_4:6331466-6331485 | Msa0311460:intron | 55.0% | |
CCCCTAAGGAAGATAGGAGC+TGG | - | chr2_4:6334069-6334088 | Msa0311460:CDS | 55.0% | |
AGAGAGAGAGAGAGGGAGGG+AGG | - | chr2_4:6331469-6331488 | Msa0311460:intron | 60.0% | |
GAGAGAGAGAGAGGGAGGGA+GGG | - | chr2_4:6331470-6331489 | Msa0311460:intron | 60.0% | |
AGAGAGAGAGGGAGGGAGGG+AGG | - | chr2_4:6331473-6331492 | Msa0311460:intron | 65.0% | |
GAGAGAGAGGGAGGGAGGGA+GGG | - | chr2_4:6331474-6331493 | Msa0311460:intron | 65.0% | |
AGAGAGGGAGGGAGGGAGGG+AGG | - | chr2_4:6331477-6331496 | Msa0311460:intron | 70.0% | |
GAGAGGGAGGGAGGGAGGGA+GGG | - | chr2_4:6331478-6331497 | Msa0311460:intron | 70.0% | |
AGGGAGGGAGGGAGGGAGGG+AGG | - | chr2_4:6331481-6331500 | Msa0311460:intron | 75.0% | |
GGGAGGGAGGGAGGGAGGGA+GGG | - | chr2_4:6331482-6331501 | Msa0311460:intron | 75.0% | |
AGGGAGGGAGGGAGGGAGGG+AGG | - | chr2_4:6331481-6331500 | Msa0311460:intron | 75.0% | |
GGGAGGGAGGGAGGGAGGGA+GGG | - | chr2_4:6331482-6331501 | Msa0311460:intron | 75.0% | |
AGGGAGGGAGGGAGGGAGGG+AGG | - | chr2_4:6331481-6331500 | Msa0311460:intron | 75.0% | |
GGGAGGGAGGGAGGGAGGGA+GGG | - | chr2_4:6331482-6331501 | Msa0311460:intron | 75.0% | |
AGGGAGGGAGGGAGGGAGGG+AGG | - | chr2_4:6331481-6331500 | Msa0311460:intron | 75.0% | |
GGGAGGGAGGGAGGGAGGGA+GGG | - | chr2_4:6331482-6331501 | Msa0311460:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 6329314 | 6334116 | 6329314 | ID=Msa0311460;Name=Msa0311460 |
chr2_4 | mRNA | 6329314 | 6334116 | 6329314 | ID=Msa0311460-mRNA-1;Parent=Msa0311460;Name=Msa0311460-mRNA-1;_AED=0.04;_eAED=0.07;_QI=0|0|0|1|1|1|2|0|465 |
chr2_4 | exon | 6332835 | 6334116 | 6332835 | ID=Msa0311460-mRNA-1:exon:2426;Parent=Msa0311460-mRNA-1 |
chr2_4 | exon | 6329314 | 6329429 | 6329314 | ID=Msa0311460-mRNA-1:exon:2425;Parent=Msa0311460-mRNA-1 |
chr2_4 | CDS | 6332835 | 6334116 | 6332835 | ID=Msa0311460-mRNA-1:cds;Parent=Msa0311460-mRNA-1 |
chr2_4 | CDS | 6329314 | 6329429 | 6329314 | ID=Msa0311460-mRNA-1:cds;Parent=Msa0311460-mRNA-1 |
Gene Sequence |
Protein sequence |