Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0313260 | XP_003593643.1 | 97.654 | 341 | 8 | 0 | 1 | 341 | 1 | 341 | 0.0 | 695 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0313260 | sp|Q9D832|DNJB4_MOUSE | 45.087 | 346 | 163 | 11 | 1 | 338 | 1 | 327 | 4.22e-79 | 248 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0272720 | Msa0313260 | 0.829886 | 4.004088e-55 | -8.615850e-47 |
Msa0313240 | Msa0313260 | 0.920888 | 7.221748e-88 | -8.615850e-47 |
Msa0313260 | Msa1267600 | 0.821477 | 3.954658e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0313260 | MtrunA17_Chr2g0282761 | 97.654 | 341 | 8 | 0 | 1 | 341 | 1 | 341 | 0.0 | 695 |
Msa0313260 | MtrunA17_Chr2g0282741 | 67.544 | 342 | 92 | 6 | 1 | 336 | 1 | 329 | 3.81e-151 | 428 |
Msa0313260 | MtrunA17_Chr4g0040501 | 62.931 | 348 | 109 | 5 | 1 | 339 | 1 | 337 | 2.91e-146 | 416 |
Msa0313260 | MtrunA17_Chr4g0006391 | 60.350 | 343 | 121 | 5 | 1 | 339 | 1 | 332 | 4.98e-137 | 392 |
Msa0313260 | MtrunA17_Chr2g0324921 | 59.302 | 344 | 119 | 4 | 1 | 339 | 1 | 328 | 1.95e-132 | 380 |
Msa0313260 | MtrunA17_Chr3g0138471 | 52.071 | 338 | 138 | 7 | 1 | 336 | 1 | 316 | 1.61e-109 | 322 |
Msa0313260 | MtrunA17_Chr3g0093111 | 40.171 | 351 | 149 | 7 | 3 | 339 | 1 | 304 | 3.00e-79 | 244 |
Msa0313260 | MtrunA17_Chr5g0415751 | 50.350 | 143 | 68 | 1 | 194 | 336 | 12 | 151 | 3.42e-46 | 154 |
Msa0313260 | MtrunA17_Chr8g0334811 | 32.670 | 352 | 194 | 12 | 5 | 332 | 15 | 347 | 8.46e-42 | 150 |
Msa0313260 | MtrunA17_Chr3g0124801 | 44.186 | 172 | 92 | 3 | 163 | 333 | 111 | 279 | 3.27e-41 | 145 |
Msa0313260 | MtrunA17_Chr2g0277721 | 44.571 | 175 | 93 | 2 | 163 | 336 | 79 | 250 | 5.08e-41 | 144 |
Msa0313260 | MtrunA17_Chr7g0269841 | 29.942 | 344 | 201 | 9 | 5 | 340 | 27 | 338 | 7.16e-36 | 132 |
Msa0313260 | MtrunA17_Chr3g0123861 | 26.816 | 358 | 215 | 13 | 4 | 336 | 82 | 417 | 4.25e-24 | 102 |
Msa0313260 | MtrunA17_Chr6g0478651 | 42.593 | 162 | 64 | 7 | 2 | 157 | 66 | 204 | 7.08e-23 | 99.4 |
Msa0313260 | MtrunA17_Chr3g0091351 | 40.777 | 103 | 57 | 2 | 228 | 329 | 2 | 101 | 2.77e-21 | 87.4 |
Msa0313260 | MtrunA17_Chr2g0322181 | 29.032 | 217 | 122 | 6 | 120 | 333 | 159 | 346 | 6.74e-21 | 92.8 |
Msa0313260 | MtrunA17_Chr2g0322181 | 61.972 | 71 | 22 | 1 | 5 | 75 | 14 | 79 | 1.54e-13 | 71.2 |
Msa0313260 | MtrunA17_Chr4g0025401 | 28.767 | 219 | 120 | 7 | 120 | 333 | 157 | 344 | 1.57e-20 | 91.7 |
Msa0313260 | MtrunA17_Chr4g0025401 | 60.563 | 71 | 23 | 1 | 5 | 75 | 14 | 79 | 3.22e-12 | 67.0 |
Msa0313260 | MtrunA17_Chr5g0426951 | 27.635 | 351 | 213 | 14 | 4 | 334 | 83 | 412 | 5.71e-20 | 90.5 |
Msa0313260 | MtrunA17_Chr7g0263971 | 60.000 | 65 | 26 | 0 | 4 | 68 | 369 | 433 | 9.39e-20 | 90.1 |
Msa0313260 | MtrunA17_Chr5g0415731 | 53.012 | 83 | 30 | 2 | 4 | 77 | 5 | 87 | 1.04e-19 | 84.3 |
Msa0313260 | MtrunA17_Chr3g0091361 | 52.000 | 75 | 36 | 0 | 3 | 77 | 4 | 78 | 5.01e-19 | 84.3 |
Msa0313260 | MtrunA17_Chr2g0333221 | 56.000 | 75 | 31 | 1 | 4 | 78 | 70 | 142 | 8.24e-18 | 84.3 |
Msa0313260 | MtrunA17_Chr1g0159491 | 47.297 | 74 | 38 | 1 | 3 | 76 | 5 | 77 | 1.99e-17 | 75.9 |
Msa0313260 | MtrunA17_Chr5g0427221 | 34.815 | 135 | 52 | 4 | 4 | 138 | 48 | 146 | 9.30e-17 | 76.3 |
Msa0313260 | MtrunA17_Chr4g0021141 | 48.611 | 72 | 36 | 1 | 4 | 75 | 22 | 92 | 1.28e-16 | 75.5 |
Msa0313260 | MtrunA17_Chr5g0399201 | 46.753 | 77 | 39 | 1 | 4 | 78 | 12 | 88 | 4.34e-16 | 79.3 |
Msa0313260 | MtrunA17_Chr7g0271891 | 48.485 | 66 | 31 | 1 | 5 | 67 | 17 | 82 | 2.02e-15 | 73.2 |
Msa0313260 | MtrunA17_Chr8g0344721 | 45.122 | 82 | 38 | 2 | 4 | 78 | 10 | 91 | 2.62e-15 | 74.3 |
Msa0313260 | MtrunA17_Chr3g0087741 | 48.684 | 76 | 38 | 1 | 1 | 76 | 86 | 160 | 4.04e-15 | 75.9 |
Msa0313260 | MtrunA17_Chr1g0209551 | 50.704 | 71 | 34 | 1 | 4 | 74 | 16 | 85 | 1.62e-14 | 73.9 |
Msa0313260 | MtrunA17_Chr4g0044331 | 51.667 | 60 | 26 | 1 | 11 | 67 | 19 | 78 | 3.54e-14 | 69.3 |
Msa0313260 | MtrunA17_Chr4g0010781 | 47.368 | 76 | 39 | 1 | 1 | 76 | 83 | 157 | 7.06e-14 | 72.4 |
Msa0313260 | MtrunA17_Chr7g0242951 | 49.275 | 69 | 33 | 1 | 3 | 71 | 26 | 92 | 1.80e-13 | 71.2 |
Msa0313260 | MtrunA17_Chr6g0460461 | 44.928 | 69 | 34 | 1 | 3 | 67 | 1 | 69 | 2.20e-13 | 68.6 |
Msa0313260 | MtrunA17_Chr1g0159511 | 47.887 | 71 | 36 | 1 | 4 | 74 | 6 | 75 | 3.21e-13 | 70.1 |
Msa0313260 | MtrunA17_Chr6g0460411 | 44.928 | 69 | 34 | 1 | 3 | 67 | 1 | 69 | 3.96e-13 | 67.8 |
Msa0313260 | MtrunA17_Chr3g0132971 | 49.254 | 67 | 31 | 2 | 3 | 68 | 68 | 132 | 4.59e-13 | 67.8 |
Msa0313260 | MtrunA17_Chr5g0414471 | 52.239 | 67 | 31 | 1 | 4 | 70 | 25 | 90 | 6.55e-13 | 69.3 |
Msa0313260 | MtrunA17_Chr1g0173931 | 47.692 | 65 | 33 | 1 | 6 | 70 | 40 | 103 | 1.93e-12 | 67.0 |
Msa0313260 | MtrunA17_Chr7g0258061 | 29.834 | 181 | 111 | 7 | 6 | 176 | 24 | 198 | 2.57e-12 | 66.2 |
Msa0313260 | MtrunA17_Chr5g0393371 | 45.070 | 71 | 38 | 1 | 4 | 74 | 6 | 75 | 3.17e-12 | 67.0 |
Msa0313260 | MtrunA17_Chr6g0460381 | 42.029 | 69 | 36 | 1 | 3 | 67 | 2 | 70 | 1.53e-11 | 62.8 |
Msa0313260 | MtrunA17_Chr2g0295821 | 34.646 | 127 | 62 | 4 | 4 | 120 | 104 | 219 | 1.95e-11 | 64.3 |
Msa0313260 | MtrunA17_Chr2g0307061 | 45.070 | 71 | 37 | 1 | 4 | 74 | 110 | 178 | 2.72e-11 | 63.9 |
Msa0313260 | MtrunA17_Chr6g0476751 | 42.169 | 83 | 46 | 1 | 3 | 85 | 65 | 145 | 3.89e-11 | 64.3 |
Msa0313260 | MtrunA17_Chr8g0352451 | 46.250 | 80 | 39 | 3 | 5 | 81 | 73 | 151 | 8.00e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0313260 | AT2G20560.1 | 60.920 | 348 | 109 | 5 | 1 | 339 | 1 | 330 | 3.60e-143 | 408 |
Msa0313260 | AT3G08910.1 | 61.062 | 339 | 107 | 6 | 1 | 339 | 1 | 314 | 9.86e-137 | 391 |
Msa0313260 | AT4G28480.1 | 60.623 | 353 | 113 | 7 | 1 | 339 | 1 | 341 | 1.15e-134 | 387 |
Msa0313260 | AT5G01390.1 | 58.960 | 346 | 116 | 7 | 1 | 339 | 1 | 327 | 5.11e-133 | 382 |
Msa0313260 | AT5G25530.2 | 53.779 | 344 | 141 | 7 | 1 | 339 | 1 | 331 | 3.80e-120 | 350 |
Msa0313260 | AT5G25530.1 | 52.557 | 352 | 141 | 8 | 1 | 339 | 1 | 339 | 3.64e-117 | 343 |
Msa0313260 | AT1G10350.1 | 50.440 | 341 | 160 | 6 | 1 | 336 | 1 | 337 | 2.27e-108 | 320 |
Msa0313260 | AT4G28480.2 | 52.924 | 342 | 99 | 8 | 1 | 339 | 1 | 283 | 4.98e-105 | 310 |
Msa0313260 | AT1G59725.1 | 50.291 | 344 | 144 | 6 | 1 | 339 | 1 | 322 | 2.56e-103 | 307 |
Msa0313260 | AT3G47940.1 | 47.934 | 363 | 136 | 9 | 1 | 336 | 1 | 337 | 1.04e-100 | 301 |
Msa0313260 | AT5G01390.2 | 48.083 | 339 | 106 | 6 | 1 | 339 | 1 | 269 | 2.17e-91 | 275 |
Msa0313260 | AT2G20550.1 | 49.466 | 281 | 95 | 4 | 100 | 339 | 3 | 277 | 9.44e-77 | 237 |
Msa0313260 | AT2G20550.2 | 49.466 | 281 | 95 | 4 | 100 | 339 | 3 | 277 | 9.44e-77 | 237 |
Msa0313260 | AT5G01390.4 | 54.028 | 211 | 74 | 5 | 1 | 204 | 1 | 195 | 1.16e-65 | 207 |
Msa0313260 | AT5G01390.3 | 65.574 | 122 | 41 | 1 | 1 | 122 | 1 | 121 | 1.98e-47 | 160 |
Msa0313260 | AT5G01390.3 | 46.429 | 140 | 33 | 2 | 200 | 339 | 133 | 230 | 8.12e-29 | 112 |
Msa0313260 | AT1G44160.1 | 39.423 | 208 | 116 | 3 | 133 | 340 | 151 | 348 | 1.13e-37 | 138 |
Msa0313260 | AT1G11040.1 | 40.212 | 189 | 105 | 3 | 151 | 339 | 246 | 426 | 4.91e-37 | 138 |
Msa0313260 | AT3G44110.1 | 30.874 | 366 | 182 | 9 | 5 | 333 | 15 | 346 | 1.68e-36 | 136 |
Msa0313260 | AT5G22060.1 | 32.703 | 370 | 171 | 12 | 5 | 333 | 15 | 347 | 5.42e-36 | 135 |
Msa0313260 | AT3G44110.2 | 30.747 | 348 | 170 | 9 | 5 | 315 | 15 | 328 | 4.57e-32 | 123 |
Msa0313260 | AT3G62600.1 | 29.651 | 344 | 196 | 10 | 2 | 333 | 24 | 333 | 3.09e-31 | 120 |
Msa0313260 | AT2G22360.1 | 27.401 | 354 | 217 | 12 | 4 | 336 | 86 | 420 | 4.16e-23 | 99.8 |
Msa0313260 | AT4G39960.1 | 54.651 | 86 | 36 | 2 | 4 | 88 | 85 | 168 | 1.03e-20 | 92.8 |
Msa0313260 | AT4G39960.2 | 54.651 | 86 | 36 | 2 | 4 | 88 | 85 | 168 | 1.03e-20 | 92.8 |
Msa0313260 | AT1G80030.4 | 54.118 | 85 | 34 | 2 | 4 | 88 | 75 | 154 | 1.92e-19 | 89.4 |
Msa0313260 | AT1G80030.2 | 54.118 | 85 | 34 | 2 | 4 | 88 | 75 | 154 | 2.66e-19 | 89.0 |
Msa0313260 | AT1G80030.3 | 54.118 | 85 | 34 | 2 | 4 | 88 | 75 | 154 | 2.66e-19 | 89.0 |
Msa0313260 | AT1G80030.1 | 54.118 | 85 | 34 | 2 | 4 | 88 | 75 | 154 | 2.66e-19 | 89.0 |
Msa0313260 | AT3G17830.1 | 51.087 | 92 | 36 | 3 | 2 | 88 | 61 | 148 | 5.68e-18 | 85.1 |
Msa0313260 | AT2G41000.2 | 43.333 | 90 | 45 | 2 | 3 | 88 | 2 | 89 | 1.72e-16 | 77.8 |
Msa0313260 | AT2G41000.1 | 43.333 | 90 | 45 | 2 | 3 | 88 | 2 | 89 | 3.13e-16 | 76.3 |
Msa0313260 | AT5G48030.1 | 51.389 | 72 | 34 | 1 | 4 | 75 | 94 | 164 | 6.28e-16 | 79.0 |
Msa0313260 | AT1G59980.2 | 50.725 | 69 | 33 | 1 | 6 | 74 | 25 | 92 | 6.85e-16 | 78.2 |
Msa0313260 | AT1G59980.1 | 50.725 | 69 | 33 | 1 | 6 | 74 | 25 | 92 | 1.25e-15 | 77.8 |
Msa0313260 | AT5G03160.1 | 52.308 | 65 | 31 | 0 | 4 | 68 | 370 | 434 | 1.35e-15 | 77.8 |
Msa0313260 | AT1G68370.1 | 53.521 | 71 | 32 | 1 | 4 | 74 | 17 | 86 | 1.81e-15 | 77.4 |
Msa0313260 | AT5G16650.2 | 55.224 | 67 | 29 | 1 | 4 | 70 | 11 | 76 | 3.85e-15 | 72.8 |
Msa0313260 | AT5G16650.1 | 56.250 | 64 | 27 | 1 | 4 | 67 | 11 | 73 | 4.50e-15 | 71.6 |
Msa0313260 | AT1G56300.2 | 50.000 | 66 | 30 | 1 | 5 | 67 | 14 | 79 | 7.17e-15 | 70.5 |
Msa0313260 | AT1G56300.1 | 50.000 | 66 | 30 | 1 | 5 | 67 | 14 | 79 | 7.93e-15 | 71.6 |
Msa0313260 | AT2G21510.3 | 50.685 | 73 | 35 | 1 | 4 | 76 | 6 | 77 | 1.81e-14 | 73.9 |
Msa0313260 | AT2G21510.1 | 50.685 | 73 | 35 | 1 | 4 | 76 | 6 | 77 | 1.81e-14 | 73.9 |
Msa0313260 | AT2G21510.2 | 50.685 | 73 | 35 | 1 | 4 | 76 | 6 | 77 | 1.84e-14 | 73.9 |
Msa0313260 | AT2G21510.4 | 50.685 | 73 | 35 | 1 | 4 | 76 | 6 | 77 | 1.84e-14 | 73.9 |
Msa0313260 | AT2G21510.5 | 50.685 | 73 | 35 | 1 | 4 | 76 | 6 | 77 | 2.71e-14 | 73.2 |
Msa0313260 | AT2G35720.1 | 45.455 | 77 | 40 | 1 | 4 | 78 | 15 | 91 | 4.43e-14 | 73.6 |
Msa0313260 | AT2G33735.1 | 47.692 | 65 | 33 | 1 | 4 | 68 | 22 | 85 | 6.68e-14 | 67.8 |
Msa0313260 | AT2G33735.2 | 47.692 | 65 | 33 | 1 | 4 | 68 | 22 | 85 | 6.68e-14 | 67.8 |
Msa0313260 | AT5G06910.1 | 50.769 | 65 | 31 | 1 | 6 | 70 | 31 | 94 | 1.11e-13 | 70.9 |
Msa0313260 | AT1G71000.2 | 46.970 | 66 | 32 | 1 | 5 | 67 | 9 | 74 | 1.88e-12 | 65.1 |
Msa0313260 | AT4G39150.3 | 45.205 | 73 | 39 | 1 | 4 | 76 | 6 | 77 | 2.53e-12 | 67.4 |
Msa0313260 | AT4G39150.1 | 45.205 | 73 | 39 | 1 | 4 | 76 | 6 | 77 | 2.53e-12 | 67.4 |
Msa0313260 | AT4G39150.2 | 45.205 | 73 | 39 | 1 | 4 | 76 | 6 | 77 | 2.53e-12 | 67.4 |
Msa0313260 | AT3G08970.1 | 47.826 | 69 | 34 | 1 | 3 | 71 | 26 | 92 | 2.60e-12 | 68.2 |
Msa0313260 | AT3G08970.2 | 47.826 | 69 | 34 | 1 | 3 | 71 | 26 | 92 | 2.60e-12 | 68.2 |
Msa0313260 | AT1G24120.1 | 49.254 | 67 | 33 | 1 | 4 | 70 | 20 | 85 | 2.76e-12 | 67.8 |
Msa0313260 | AT4G13830.1 | 43.284 | 67 | 37 | 1 | 3 | 68 | 65 | 131 | 3.46e-12 | 64.3 |
Msa0313260 | AT3G12170.1 | 47.692 | 65 | 33 | 1 | 6 | 70 | 13 | 76 | 3.81e-12 | 66.2 |
Msa0313260 | AT4G13830.3 | 43.284 | 67 | 37 | 1 | 3 | 68 | 65 | 131 | 3.91e-12 | 64.7 |
Msa0313260 | AT3G06340.2 | 38.532 | 109 | 62 | 2 | 3 | 111 | 66 | 169 | 4.57e-12 | 67.4 |
Msa0313260 | AT3G06340.4 | 38.532 | 109 | 62 | 2 | 3 | 111 | 66 | 169 | 4.57e-12 | 67.4 |
Msa0313260 | AT3G06340.3 | 38.532 | 109 | 62 | 2 | 3 | 111 | 66 | 169 | 4.57e-12 | 67.4 |
Msa0313260 | AT3G06340.1 | 38.532 | 109 | 62 | 2 | 3 | 111 | 66 | 169 | 4.57e-12 | 67.4 |
Msa0313260 | AT1G71000.1 | 46.970 | 66 | 32 | 1 | 5 | 67 | 9 | 74 | 5.20e-12 | 63.9 |
Msa0313260 | AT3G12170.2 | 47.692 | 65 | 33 | 1 | 6 | 70 | 49 | 112 | 6.62e-12 | 65.9 |
Msa0313260 | AT4G13830.2 | 43.284 | 67 | 37 | 1 | 3 | 68 | 65 | 131 | 1.65e-11 | 63.2 |
Msa0313260 | AT5G49060.2 | 49.254 | 67 | 32 | 1 | 4 | 70 | 99 | 163 | 2.10e-11 | 64.7 |
Msa0313260 | AT5G49060.1 | 49.254 | 67 | 32 | 1 | 4 | 70 | 99 | 163 | 2.10e-11 | 64.7 |
Msa0313260 | AT1G21080.3 | 46.479 | 71 | 37 | 1 | 4 | 74 | 6 | 75 | 2.15e-11 | 65.1 |
Msa0313260 | AT1G21080.1 | 45.070 | 71 | 38 | 1 | 4 | 74 | 6 | 75 | 2.18e-11 | 65.1 |
Msa0313260 | AT4G19570.1 | 50.000 | 70 | 33 | 1 | 4 | 73 | 66 | 133 | 2.26e-11 | 65.1 |
Msa0313260 | AT3G14200.1 | 45.312 | 64 | 33 | 1 | 6 | 67 | 14 | 77 | 5.92e-11 | 62.0 |
Msa0313260 | AT1G76700.1 | 46.479 | 71 | 37 | 1 | 4 | 74 | 6 | 75 | 6.40e-11 | 63.5 |
Find 92 sgRNAs with CRISPR-Local
Find 374 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGGATTACTATGAGATTT+TGG | 0.205034 | 2_4:+8622032 | Msa0313260:CDS |
GGTTGCTCATTTCCTTTCTC+TGG | 0.210750 | 2_4:-8623850 | None:intergenic |
CCATGAACATTTCTTAGTTC+TGG | 0.280207 | 2_4:-8624194 | None:intergenic |
ACCTTCTCCCATCCTGAGTT+TGG | 0.289236 | 2_4:-8623118 | None:intergenic |
AAATATGCCATCTGCACTTC+TGG | 0.292239 | 2_4:-8623153 | None:intergenic |
AATCCAACCAGGCTGGAAAA+AGG | 0.300367 | 2_4:+8623810 | Msa0313260:CDS |
CATAGACCAAAGTCATAAAA+TGG | 0.303972 | 2_4:-8624308 | None:intergenic |
CCATCCTGAGTTTGGAAGTA+TGG | 0.308740 | 2_4:-8623110 | None:intergenic |
CTTGTCAGGGTGCCATTTCA+TGG | 0.323618 | 2_4:-8622109 | None:intergenic |
CTTCACAGAGGGGTAATCTT+AGG | 0.330562 | 2_4:+8624121 | Msa0313260:CDS |
TGGATCAATTCCATTGTCTA+TGG | 0.331007 | 2_4:-8624049 | None:intergenic |
AGAGCAATTTATGATCAATA+TGG | 0.332277 | 2_4:+8623038 | Msa0313260:CDS |
TCGTGGGTGTCCAGGTCTTT+TGG | 0.336631 | 2_4:+8623260 | Msa0313260:CDS |
TACAAGACAAGGTAATGATT+TGG | 0.349376 | 2_4:+8623930 | Msa0313260:CDS |
ATTATTATTGAACAGAACTA+TGG | 0.351183 | 2_4:-8621910 | None:intergenic |
CACCTTCCAACTTACTACTT+TGG | 0.365824 | 2_4:+8624005 | Msa0313260:CDS |
CTCATTCCCATTCCTCCATA+AGG | 0.366245 | 2_4:-8623200 | None:intergenic |
TTATTGTCAGGATTCTTGTC+AGG | 0.367944 | 2_4:-8622123 | None:intergenic |
CTCAGGATGGGAGAAGGTTT+AGG | 0.369340 | 2_4:+8623123 | Msa0313260:CDS |
AAGAAAAGAGAGTTAATAAC+AGG | 0.370399 | 2_4:-8624285 | None:intergenic |
AGCCTTGAGGAACTTTATAA+AGG | 0.373517 | 2_4:+8623377 | Msa0313260:CDS |
GGGCGGCGGCTGCAGAGGCA+TGG | 0.376556 | 2_4:+8623223 | Msa0313260:CDS |
ATAGAAAACTTGCCATGAAA+TGG | 0.412382 | 2_4:+8622097 | Msa0313260:CDS |
GTTGCTCATTTCCTTTCTCT+GGG | 0.417866 | 2_4:-8623849 | None:intergenic |
GGCGGCGGCTGCAGAGGCAT+GGG | 0.419490 | 2_4:+8623224 | Msa0313260:CDS |
TCAAGCCCTTATGGAGGAAT+GGG | 0.422615 | 2_4:+8623194 | Msa0313260:CDS |
TCATTCCCATTCCTCCATAA+GGG | 0.426221 | 2_4:-8623199 | None:intergenic |
GCCGGCAACCACTTCTTCAT+AGG | 0.427823 | 2_4:-8624073 | None:intergenic |
TCAGCATCATTCTTATTGTC+AGG | 0.435149 | 2_4:-8622135 | None:intergenic |
ATATCTGCAGCAATGACATT+TGG | 0.437256 | 2_4:-8623871 | None:intergenic |
ATGGGAGGTGCCTTGCGTCT+TGG | 0.439334 | 2_4:-8623335 | None:intergenic |
ACCTATGAAGAAGTGGTTGC+CGG | 0.441137 | 2_4:+8624072 | Msa0313260:CDS |
CCAGAACTAAGAAATGTTCA+TGG | 0.442643 | 2_4:+8624194 | Msa0313260:exon |
GGAATGGGAATGAGGGGCGG+CGG | 0.451910 | 2_4:+8623209 | Msa0313260:CDS |
TTCCAACTTACTACTTTGGA+TGG | 0.453959 | 2_4:+8624009 | Msa0313260:CDS |
ATGAGGGGCGGCGGCTGCAG+AGG | 0.461247 | 2_4:+8623218 | Msa0313260:CDS |
AATATGCCATCTGCACTTCT+GGG | 0.462504 | 2_4:-8623152 | None:intergenic |
TACATATACCTCATATGCTT+CGG | 0.471997 | 2_4:-8622178 | None:intergenic |
CTTATGGAGGAATGGGAATG+AGG | 0.472062 | 2_4:+8623201 | Msa0313260:CDS |
AAAGTAGTGGAAGATGGGTT+TGG | 0.472595 | 2_4:+8622014 | Msa0313260:exon |
TTCAAGCCCTTATGGAGGAA+TGG | 0.472986 | 2_4:+8623193 | Msa0313260:CDS |
ACTCATATCCGAAGCATATG+AGG | 0.475266 | 2_4:+8622170 | Msa0313260:CDS |
GACAGCAAAGTAGTGGAAGA+TGG | 0.481901 | 2_4:+8622008 | Msa0313260:exon |
GCTGCACTGTCACCTGTTGT+AGG | 0.483205 | 2_4:-8623086 | None:intergenic |
GTTTCAGCATCAACAGTGCT+AGG | 0.485618 | 2_4:-8624165 | None:intergenic |
GGAAATTGGCATCCCTTCGC+CGG | 0.486902 | 2_4:-8624091 | None:intergenic |
AAAATCACTTTCCCAGAGAA+AGG | 0.488986 | 2_4:+8623838 | Msa0313260:CDS |
AACTTACTACTTTGGATGGA+AGG | 0.491000 | 2_4:+8624013 | Msa0313260:CDS |
GAGGTCAGTCGTGGGTGTCC+AGG | 0.495164 | 2_4:+8623252 | Msa0313260:CDS |
TATTGTCAGGATTCTTGTCA+GGG | 0.495700 | 2_4:-8622122 | None:intergenic |
ATTGTTAGTATTTCCTCCAC+AGG | 0.497108 | 2_4:-8623784 | None:intergenic |
TAAAGTTCCTCAAGGCTACA+AGG | 0.497264 | 2_4:-8623371 | None:intergenic |
TTCCATCCAAAGTAGTAAGT+TGG | 0.497925 | 2_4:-8624011 | None:intergenic |
GCAACCACTTCTTCATAGGT+TGG | 0.518940 | 2_4:-8624069 | None:intergenic |
ACACAAGATGCACTTGGTAA+TGG | 0.523093 | 2_4:-8624236 | None:intergenic |
AAGAAGTGGTTGCCGGCGAA+GGG | 0.526680 | 2_4:+8624079 | Msa0313260:CDS |
GGAGGAATGGGAATGAGGGG+CGG | 0.532345 | 2_4:+8623206 | Msa0313260:CDS |
GGGAAATTGCATATGCAAGC+GGG | 0.532622 | 2_4:+8623426 | Msa0313260:CDS |
TGGGCATGAGAGGTCAGTCG+TGG | 0.533992 | 2_4:+8623243 | Msa0313260:CDS |
TTATGGAGGAATGGGAATGA+GGG | 0.534716 | 2_4:+8623202 | Msa0313260:CDS |
GAAGAAGTGGTTGCCGGCGA+AGG | 0.534745 | 2_4:+8624078 | Msa0313260:CDS |
GAAAAGTGACAGCAAAGTAG+TGG | 0.540728 | 2_4:+8622001 | Msa0313260:five_prime_UTR |
AAAGAAAGTCCTACCTTGAG+TGG | 0.545417 | 2_4:+8621974 | Msa0313260:five_prime_UTR |
CCATACTTCCAAACTCAGGA+TGG | 0.546274 | 2_4:+8623110 | Msa0313260:CDS |
TGCAGAGGCATGGGCATGAG+AGG | 0.547127 | 2_4:+8623233 | Msa0313260:CDS |
ACTTACTACTTTGGATGGAA+GGG | 0.553717 | 2_4:+8624014 | Msa0313260:CDS |
TGATCCAACCTATGAAGAAG+TGG | 0.557696 | 2_4:+8624065 | Msa0313260:CDS |
CACAATGTATTTACAAGACA+AGG | 0.557753 | 2_4:+8623919 | Msa0313260:CDS |
TACCTTTATAAAGTTCCTCA+AGG | 0.559294 | 2_4:-8623379 | None:intergenic |
CAATTGAAATCCAACCAGGC+TGG | 0.559519 | 2_4:+8623803 | Msa0313260:CDS |
AATTCCATTGTCTATGGCAA+TGG | 0.561820 | 2_4:-8624043 | None:intergenic |
ACAGCAAAGTAGTGGAAGAT+GGG | 0.564941 | 2_4:+8622009 | Msa0313260:exon |
TCCAAACTCAGGATGGGAGA+AGG | 0.569887 | 2_4:+8623117 | Msa0313260:CDS |
CTGACCATTGCCATAGACAA+TGG | 0.576926 | 2_4:+8624039 | Msa0313260:CDS |
TGTCTTGTAAATACATTGTG+AGG | 0.577798 | 2_4:-8623916 | None:intergenic |
CTTACTACTTTGGATGGAAG+GGG | 0.580719 | 2_4:+8624015 | Msa0313260:CDS |
TTCAATCCCAGAAGTGCAGA+TGG | 0.585321 | 2_4:+8623146 | Msa0313260:CDS |
TAAATTGCCTTGTAGCCTTG+AGG | 0.594347 | 2_4:+8623364 | Msa0313260:CDS |
CAGCAAAACTGTACCTGTGG+AGG | 0.596250 | 2_4:+8623771 | Msa0313260:intron |
CTAAGATTACCCCTCTGTGA+AGG | 0.605911 | 2_4:-8624120 | None:intergenic |
CAAAAGATATTACTTGCAGA+AGG | 0.606997 | 2_4:+8623961 | Msa0313260:CDS |
AGCTCCATACTTCCAAACTC+AGG | 0.611168 | 2_4:+8623106 | Msa0313260:CDS |
ATCCAAAGTAGTAAGTTGGA+AGG | 0.613336 | 2_4:-8624007 | None:intergenic |
AACTATACACAAGATGCACT+TGG | 0.613457 | 2_4:-8624242 | None:intergenic |
TTTCAGCATCAACAGTGCTA+GGG | 0.617985 | 2_4:-8624164 | None:intergenic |
CATACTTCCAAACTCAGGAT+GGG | 0.624330 | 2_4:+8623111 | Msa0313260:CDS |
CTAACAATTGAAATCCAACC+AGG | 0.624854 | 2_4:+8623799 | Msa0313260:CDS |
GGGCATGAGAGGTCAGTCGT+GGG | 0.626238 | 2_4:+8623244 | Msa0313260:CDS |
AGGGAAATTGCATATGCAAG+CGG | 0.628782 | 2_4:+8623425 | Msa0313260:CDS |
GAGTCAAGCTCCAAGACGCA+AGG | 0.642529 | 2_4:+8623325 | Msa0313260:CDS |
TTGCAGCAAAACTGTACCTG+TGG | 0.678062 | 2_4:+8623768 | Msa0313260:intron |
TATGGAGGAATGGGAATGAG+GGG | 0.684119 | 2_4:+8623203 | Msa0313260:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TCAAAGAATTTTATGAATTT+AGG | + | chr2_4:8622473-8622492 | Msa0313260:intron | 15.0% |
!! | GAAAAAAAAATTGAAAATTG+AGG | - | chr2_4:8622519-8622538 | None:intergenic | 15.0% |
!!! | TCAAAGAATTTTATGAATTT+AGG | + | chr2_4:8622473-8622492 | Msa0313260:intron | 15.0% |
!! | GAAAAAAAAATTGAAAATTG+AGG | - | chr2_4:8622519-8622538 | None:intergenic | 15.0% |
!!! | TGTTTTTAGTTACAAAACTA+TGG | + | chr2_4:8622210-8622229 | Msa0313260:intron | 20.0% |
!!! | AAATTGAAAATTGAGGATTT+TGG | - | chr2_4:8622512-8622531 | None:intergenic | 20.0% |
!! | GGAAAAACATATATTATGAT+AGG | + | chr2_4:8622686-8622705 | Msa0313260:intron | 20.0% |
!! | TGTTGAGTAATAATGTTATA+AGG | + | chr2_4:8622837-8622856 | Msa0313260:intron | 20.0% |
!! | GTTGAGTAATAATGTTATAA+GGG | + | chr2_4:8622838-8622857 | Msa0313260:intron | 20.0% |
!! | GATGGAAAATAAATACAATA+AGG | - | chr2_4:8622872-8622891 | None:intergenic | 20.0% |
!!! | ATTGAAATTTTACTGAATGA+TGG | - | chr2_4:8622890-8622909 | None:intergenic | 20.0% |
!! | ATAAAATGTAGTTACAAAGT+TGG | - | chr2_4:8623628-8623647 | None:intergenic | 20.0% |
!!! | TGTTTTTAGTTACAAAACTA+TGG | + | chr2_4:8622210-8622229 | Msa0313260:intron | 20.0% |
!!! | AAATTGAAAATTGAGGATTT+TGG | - | chr2_4:8622512-8622531 | None:intergenic | 20.0% |
!! | GGAAAAACATATATTATGAT+AGG | + | chr2_4:8622686-8622705 | Msa0313260:intron | 20.0% |
!! | TGTTGAGTAATAATGTTATA+AGG | + | chr2_4:8622837-8622856 | Msa0313260:intron | 20.0% |
!! | GTTGAGTAATAATGTTATAA+GGG | + | chr2_4:8622838-8622857 | Msa0313260:intron | 20.0% |
!! | GATGGAAAATAAATACAATA+AGG | - | chr2_4:8622872-8622891 | None:intergenic | 20.0% |
!!! | ATTGAAATTTTACTGAATGA+TGG | - | chr2_4:8622890-8622909 | None:intergenic | 20.0% |
!! | ATAAAATGTAGTTACAAAGT+TGG | - | chr2_4:8623628-8623647 | None:intergenic | 20.0% |
!! | TTTGGATTACTATGAGATTT+TGG | + | chr2_4:8622032-8622051 | Msa0313260:CDS | 25.0% |
!! | TTTTATGTTTAAGCCTTGAT+TGG | + | chr2_4:8622342-8622361 | Msa0313260:intron | 25.0% |
! | TTATAAGCTAAAACCAATCA+AGG | - | chr2_4:8622358-8622377 | None:intergenic | 25.0% |
! | TATAATCTGTGATATACAGT+CGG | + | chr2_4:8622422-8622441 | Msa0313260:intron | 25.0% |
!!! | AAAATTGAGGATTTTGGTAA+GGG | - | chr2_4:8622506-8622525 | None:intergenic | 25.0% |
!! | TAATCATTTGACTTTGAGTA+AGG | + | chr2_4:8622595-8622614 | Msa0313260:intron | 25.0% |
!! | AATCATTTGACTTTGAGTAA+GGG | + | chr2_4:8622596-8622615 | Msa0313260:intron | 25.0% |
! | ATAGAATGATAAGCATCATT+TGG | + | chr2_4:8622633-8622652 | Msa0313260:intron | 25.0% |
! | GTAACTAAGATCAATTTAAG+AGG | - | chr2_4:8622716-8622735 | None:intergenic | 25.0% |
! | ATTGATCTTAGTTACTTCAA+AGG | + | chr2_4:8622721-8622740 | Msa0313260:intron | 25.0% |
!! | AGCACACAATTCTTTAATTT+CGG | - | chr2_4:8622777-8622796 | None:intergenic | 25.0% |
!!! | AGTTAGTTTTCATCAATTCA+TGG | + | chr2_4:8622913-8622932 | Msa0313260:intron | 25.0% |
!! | TCTGACTTAGTATATTGATT+TGG | + | chr2_4:8622984-8623003 | Msa0313260:intron | 25.0% |
! | AGAGCAATTTATGATCAATA+TGG | + | chr2_4:8623038-8623057 | Msa0313260:CDS | 25.0% |
!!! | ATTTTTGGCAAAGATGTATT+TGG | + | chr2_4:8623287-8623306 | Msa0313260:CDS | 25.0% |
!!! | CAAGGCAATTTATTTTCAAT+GGG | - | chr2_4:8623356-8623375 | None:intergenic | 25.0% |
!!! | ACAAGGCAATTTATTTTCAA+TGG | - | chr2_4:8623357-8623376 | None:intergenic | 25.0% |
! | AGTTTCAATACATTTCTAAC+TGG | + | chr2_4:8623560-8623579 | Msa0313260:intron | 25.0% |
! | CAATAAATTGCTATACTTGT+AGG | - | chr2_4:8623731-8623750 | None:intergenic | 25.0% |
! | AAGAAAAGAGAGTTAATAAC+AGG | - | chr2_4:8624288-8624307 | None:intergenic | 25.0% |
!! | TTTCTTCCATTTTATGACTT+TGG | + | chr2_4:8624302-8624321 | Msa0313260:three_prime_UTR | 25.0% |
!! | TTTGGATTACTATGAGATTT+TGG | + | chr2_4:8622032-8622051 | Msa0313260:CDS | 25.0% |
!! | TTTTATGTTTAAGCCTTGAT+TGG | + | chr2_4:8622342-8622361 | Msa0313260:intron | 25.0% |
! | TTATAAGCTAAAACCAATCA+AGG | - | chr2_4:8622358-8622377 | None:intergenic | 25.0% |
! | TATAATCTGTGATATACAGT+CGG | + | chr2_4:8622422-8622441 | Msa0313260:intron | 25.0% |
!!! | AAAATTGAGGATTTTGGTAA+GGG | - | chr2_4:8622506-8622525 | None:intergenic | 25.0% |
!! | TAATCATTTGACTTTGAGTA+AGG | + | chr2_4:8622595-8622614 | Msa0313260:intron | 25.0% |
!! | AATCATTTGACTTTGAGTAA+GGG | + | chr2_4:8622596-8622615 | Msa0313260:intron | 25.0% |
! | ATAGAATGATAAGCATCATT+TGG | + | chr2_4:8622633-8622652 | Msa0313260:intron | 25.0% |
! | GTAACTAAGATCAATTTAAG+AGG | - | chr2_4:8622716-8622735 | None:intergenic | 25.0% |
! | ATTGATCTTAGTTACTTCAA+AGG | + | chr2_4:8622721-8622740 | Msa0313260:intron | 25.0% |
!! | AGCACACAATTCTTTAATTT+CGG | - | chr2_4:8622777-8622796 | None:intergenic | 25.0% |
!!! | AGTTAGTTTTCATCAATTCA+TGG | + | chr2_4:8622913-8622932 | Msa0313260:intron | 25.0% |
!! | TCTGACTTAGTATATTGATT+TGG | + | chr2_4:8622984-8623003 | Msa0313260:intron | 25.0% |
! | AGAGCAATTTATGATCAATA+TGG | + | chr2_4:8623038-8623057 | Msa0313260:CDS | 25.0% |
!!! | ATTTTTGGCAAAGATGTATT+TGG | + | chr2_4:8623287-8623306 | Msa0313260:CDS | 25.0% |
!!! | CAAGGCAATTTATTTTCAAT+GGG | - | chr2_4:8623356-8623375 | None:intergenic | 25.0% |
!!! | ACAAGGCAATTTATTTTCAA+TGG | - | chr2_4:8623357-8623376 | None:intergenic | 25.0% |
! | AGTTTCAATACATTTCTAAC+TGG | + | chr2_4:8623560-8623579 | Msa0313260:intron | 25.0% |
! | CAATAAATTGCTATACTTGT+AGG | - | chr2_4:8623731-8623750 | None:intergenic | 25.0% |
! | AAGAAAAGAGAGTTAATAAC+AGG | - | chr2_4:8624288-8624307 | None:intergenic | 25.0% |
!! | TTTCTTCCATTTTATGACTT+TGG | + | chr2_4:8624302-8624321 | Msa0313260:three_prime_UTR | 25.0% |
!!! | CAAGTTTTTTGTCTTGTTTC+TGG | - | chr2_4:8621950-8621969 | None:intergenic | 30.0% |
ATAGAAAACTTGCCATGAAA+TGG | + | chr2_4:8622097-8622116 | Msa0313260:CDS | 30.0% | |
TACATATACCTCATATGCTT+CGG | - | chr2_4:8622181-8622200 | None:intergenic | 30.0% | |
CATATTGAGATCCAATTTGA+TGG | + | chr2_4:8622398-8622417 | Msa0313260:intron | 30.0% | |
ACAGATTATAGCCATCAAAT+TGG | - | chr2_4:8622412-8622431 | None:intergenic | 30.0% | |
AAATTCTTTGACCCTTCTTA+GGG | - | chr2_4:8622464-8622483 | None:intergenic | 30.0% | |
AAAATTCTTTGACCCTTCTT+AGG | - | chr2_4:8622465-8622484 | None:intergenic | 30.0% | |
!! | GAAAATTGAGGATTTTGGTA+AGG | - | chr2_4:8622507-8622526 | None:intergenic | 30.0% |
AAATAAAGCCACATTCAGAT+TGG | - | chr2_4:8622551-8622570 | None:intergenic | 30.0% | |
CTAAGATCAATTTAAGAGGT+TGG | - | chr2_4:8622712-8622731 | None:intergenic | 30.0% | |
! | CTTTAATTTCGGTAAAACCA+AGG | - | chr2_4:8622766-8622785 | None:intergenic | 30.0% |
! | CATAAATTGCTCTCTTTTGT+GGG | - | chr2_4:8623031-8623050 | None:intergenic | 30.0% |
! | TCATAAATTGCTCTCTTTTG+TGG | - | chr2_4:8623032-8623051 | None:intergenic | 30.0% |
!! | TTGTAGGCATTCCATTTTTA+AGG | - | chr2_4:8623073-8623092 | None:intergenic | 30.0% |
TACCTTTATAAAGTTCCTCA+AGG | - | chr2_4:8623382-8623401 | None:intergenic | 30.0% | |
CAAAAAGATGAAGATCTCAA+GGG | + | chr2_4:8623406-8623425 | Msa0313260:CDS | 30.0% | |
TGATGTGAATTAAAAAGCCA+GGG | - | chr2_4:8623464-8623483 | None:intergenic | 30.0% | |
TTGATGTGAATTAAAAAGCC+AGG | - | chr2_4:8623465-8623484 | None:intergenic | 30.0% | |
TTCAATACATTTCTAACTGG+CGG | + | chr2_4:8623563-8623582 | Msa0313260:intron | 30.0% | |
AATACAAGATTCTTTCTCGT+TGG | + | chr2_4:8623659-8623678 | Msa0313260:intron | 30.0% | |
TGTCTTGTAAATACATTGTG+AGG | - | chr2_4:8623919-8623938 | None:intergenic | 30.0% | |
CACAATGTATTTACAAGACA+AGG | + | chr2_4:8623919-8623938 | Msa0313260:CDS | 30.0% | |
TACAAGACAAGGTAATGATT+TGG | + | chr2_4:8623930-8623949 | Msa0313260:CDS | 30.0% | |
CAAAAGATATTACTTGCAGA+AGG | + | chr2_4:8623961-8623980 | Msa0313260:CDS | 30.0% | |
!! | TGTGAAGGATTTTTGGAAAT+TGG | - | chr2_4:8624108-8624127 | None:intergenic | 30.0% |
CATAGACCAAAGTCATAAAA+TGG | - | chr2_4:8624311-8624330 | None:intergenic | 30.0% | |
!!! | CAAGTTTTTTGTCTTGTTTC+TGG | - | chr2_4:8621950-8621969 | None:intergenic | 30.0% |
ATAGAAAACTTGCCATGAAA+TGG | + | chr2_4:8622097-8622116 | Msa0313260:CDS | 30.0% | |
TACATATACCTCATATGCTT+CGG | - | chr2_4:8622181-8622200 | None:intergenic | 30.0% | |
CATATTGAGATCCAATTTGA+TGG | + | chr2_4:8622398-8622417 | Msa0313260:intron | 30.0% | |
ACAGATTATAGCCATCAAAT+TGG | - | chr2_4:8622412-8622431 | None:intergenic | 30.0% | |
AAATTCTTTGACCCTTCTTA+GGG | - | chr2_4:8622464-8622483 | None:intergenic | 30.0% | |
AAAATTCTTTGACCCTTCTT+AGG | - | chr2_4:8622465-8622484 | None:intergenic | 30.0% | |
!! | GAAAATTGAGGATTTTGGTA+AGG | - | chr2_4:8622507-8622526 | None:intergenic | 30.0% |
AAATAAAGCCACATTCAGAT+TGG | - | chr2_4:8622551-8622570 | None:intergenic | 30.0% | |
CTAAGATCAATTTAAGAGGT+TGG | - | chr2_4:8622712-8622731 | None:intergenic | 30.0% | |
! | CTTTAATTTCGGTAAAACCA+AGG | - | chr2_4:8622766-8622785 | None:intergenic | 30.0% |
! | CATAAATTGCTCTCTTTTGT+GGG | - | chr2_4:8623031-8623050 | None:intergenic | 30.0% |
! | TCATAAATTGCTCTCTTTTG+TGG | - | chr2_4:8623032-8623051 | None:intergenic | 30.0% |
!! | TTGTAGGCATTCCATTTTTA+AGG | - | chr2_4:8623073-8623092 | None:intergenic | 30.0% |
TACCTTTATAAAGTTCCTCA+AGG | - | chr2_4:8623382-8623401 | None:intergenic | 30.0% | |
CAAAAAGATGAAGATCTCAA+GGG | + | chr2_4:8623406-8623425 | Msa0313260:CDS | 30.0% | |
TGATGTGAATTAAAAAGCCA+GGG | - | chr2_4:8623464-8623483 | None:intergenic | 30.0% | |
TTGATGTGAATTAAAAAGCC+AGG | - | chr2_4:8623465-8623484 | None:intergenic | 30.0% | |
TTCAATACATTTCTAACTGG+CGG | + | chr2_4:8623563-8623582 | Msa0313260:intron | 30.0% | |
AATACAAGATTCTTTCTCGT+TGG | + | chr2_4:8623659-8623678 | Msa0313260:intron | 30.0% | |
TGTCTTGTAAATACATTGTG+AGG | - | chr2_4:8623919-8623938 | None:intergenic | 30.0% | |
CACAATGTATTTACAAGACA+AGG | + | chr2_4:8623919-8623938 | Msa0313260:CDS | 30.0% | |
TACAAGACAAGGTAATGATT+TGG | + | chr2_4:8623930-8623949 | Msa0313260:CDS | 30.0% | |
CAAAAGATATTACTTGCAGA+AGG | + | chr2_4:8623961-8623980 | Msa0313260:CDS | 30.0% | |
!! | TGTGAAGGATTTTTGGAAAT+TGG | - | chr2_4:8624108-8624127 | None:intergenic | 30.0% |
CATAGACCAAAGTCATAAAA+TGG | - | chr2_4:8624311-8624330 | None:intergenic | 30.0% | |
! | GGATTACTATGAGATTTTGG+AGG | + | chr2_4:8622035-8622054 | Msa0313260:CDS | 35.0% |
TATTGTCAGGATTCTTGTCA+GGG | - | chr2_4:8622125-8622144 | None:intergenic | 35.0% | |
TTATTGTCAGGATTCTTGTC+AGG | - | chr2_4:8622126-8622145 | None:intergenic | 35.0% | |
TCAGCATCATTCTTATTGTC+AGG | - | chr2_4:8622138-8622157 | None:intergenic | 35.0% | |
! | ACTGATCATTCATGTTTCTG+AGG | + | chr2_4:8622236-8622255 | Msa0313260:intron | 35.0% |
AAACTTATGATCCCCTAAGA+AGG | + | chr2_4:8622449-8622468 | Msa0313260:intron | 35.0% | |
AACTTATGATCCCCTAAGAA+GGG | + | chr2_4:8622450-8622469 | Msa0313260:intron | 35.0% | |
AATTCTTTGACCCTTCTTAG+GGG | - | chr2_4:8622463-8622482 | None:intergenic | 35.0% | |
ACATTCAGATTGGATAGTGA+AGG | - | chr2_4:8622541-8622560 | None:intergenic | 35.0% | |
TTCACTATCCAATCTGAATG+TGG | + | chr2_4:8622540-8622559 | Msa0313260:intron | 35.0% | |
! | GTTTTTCCATATACCAAAGC+CGG | - | chr2_4:8622674-8622693 | None:intergenic | 35.0% |
CAGATTCTGTGAACATTTCA+TGG | - | chr2_4:8622968-8622987 | None:intergenic | 35.0% | |
!! | ATATTGATTTGGCTTCACGT+AGG | + | chr2_4:8622995-8623014 | Msa0313260:intron | 35.0% |
AAAAATGGAATGCCTACAAC+AGG | + | chr2_4:8623074-8623093 | Msa0313260:CDS | 35.0% | |
! | GGCATATTTGCAGAAGTTTT+TGG | + | chr2_4:8623167-8623186 | Msa0313260:CDS | 35.0% |
AAAAATATCGCCAAAAGACC+TGG | - | chr2_4:8623273-8623292 | None:intergenic | 35.0% | |
! | AGGTCTTTTGGCGATATTTT+TGG | + | chr2_4:8623272-8623291 | Msa0313260:CDS | 35.0% |
!! | GGCAATTTATTTTCAATGGG+AGG | - | chr2_4:8623353-8623372 | None:intergenic | 35.0% |
AGCCTTGAGGAACTTTATAA+AGG | + | chr2_4:8623377-8623396 | Msa0313260:CDS | 35.0% | |
! | CCTTGAGATCTTCATCTTTT+TGG | - | chr2_4:8623408-8623427 | None:intergenic | 35.0% |
CCAAAAAGATGAAGATCTCA+AGG | + | chr2_4:8623405-8623424 | Msa0313260:CDS | 35.0% | |
GATGTGAATTAAAAAGCCAG+GGG | - | chr2_4:8623463-8623482 | None:intergenic | 35.0% | |
!!! | GCAGAATGAGAGTTTTTTGT+TGG | + | chr2_4:8623521-8623540 | Msa0313260:intron | 35.0% |
CATAACAAGCGAAAGGAAAT+GGG | - | chr2_4:8623704-8623723 | None:intergenic | 35.0% | |
ACATAACAAGCGAAAGGAAA+TGG | - | chr2_4:8623705-8623724 | None:intergenic | 35.0% | |
ATTGTTAGTATTTCCTCCAC+AGG | - | chr2_4:8623787-8623806 | None:intergenic | 35.0% | |
CTAACAATTGAAATCCAACC+AGG | + | chr2_4:8623799-8623818 | Msa0313260:CDS | 35.0% | |
AAAATCACTTTCCCAGAGAA+AGG | + | chr2_4:8623838-8623857 | Msa0313260:CDS | 35.0% | |
ATATCTGCAGCAATGACATT+TGG | - | chr2_4:8623874-8623893 | None:intergenic | 35.0% | |
! | ATCCAAAGTAGTAAGTTGGA+AGG | - | chr2_4:8624010-8624029 | None:intergenic | 35.0% |
TTCCAACTTACTACTTTGGA+TGG | + | chr2_4:8624009-8624028 | Msa0313260:CDS | 35.0% | |
TTCCATCCAAAGTAGTAAGT+TGG | - | chr2_4:8624014-8624033 | None:intergenic | 35.0% | |
AACTTACTACTTTGGATGGA+AGG | + | chr2_4:8624013-8624032 | Msa0313260:CDS | 35.0% | |
ACTTACTACTTTGGATGGAA+GGG | + | chr2_4:8624014-8624033 | Msa0313260:CDS | 35.0% | |
AATTCCATTGTCTATGGCAA+TGG | - | chr2_4:8624046-8624065 | None:intergenic | 35.0% | |
TGGATCAATTCCATTGTCTA+TGG | - | chr2_4:8624052-8624071 | None:intergenic | 35.0% | |
TTTCCAAAAATCCTTCACAG+AGG | + | chr2_4:8624109-8624128 | Msa0313260:CDS | 35.0% | |
TTCCAAAAATCCTTCACAGA+GGG | + | chr2_4:8624110-8624129 | Msa0313260:CDS | 35.0% | |
CCATGAACATTTCTTAGTTC+TGG | - | chr2_4:8624197-8624216 | None:intergenic | 35.0% | |
CCAGAACTAAGAAATGTTCA+TGG | + | chr2_4:8624194-8624213 | Msa0313260:exon | 35.0% | |
AACTATACACAAGATGCACT+TGG | - | chr2_4:8624245-8624264 | None:intergenic | 35.0% | |
! | GGATTACTATGAGATTTTGG+AGG | + | chr2_4:8622035-8622054 | Msa0313260:CDS | 35.0% |
TATTGTCAGGATTCTTGTCA+GGG | - | chr2_4:8622125-8622144 | None:intergenic | 35.0% | |
TTATTGTCAGGATTCTTGTC+AGG | - | chr2_4:8622126-8622145 | None:intergenic | 35.0% | |
TCAGCATCATTCTTATTGTC+AGG | - | chr2_4:8622138-8622157 | None:intergenic | 35.0% | |
! | ACTGATCATTCATGTTTCTG+AGG | + | chr2_4:8622236-8622255 | Msa0313260:intron | 35.0% |
AAACTTATGATCCCCTAAGA+AGG | + | chr2_4:8622449-8622468 | Msa0313260:intron | 35.0% | |
AACTTATGATCCCCTAAGAA+GGG | + | chr2_4:8622450-8622469 | Msa0313260:intron | 35.0% | |
AATTCTTTGACCCTTCTTAG+GGG | - | chr2_4:8622463-8622482 | None:intergenic | 35.0% | |
ACATTCAGATTGGATAGTGA+AGG | - | chr2_4:8622541-8622560 | None:intergenic | 35.0% | |
TTCACTATCCAATCTGAATG+TGG | + | chr2_4:8622540-8622559 | Msa0313260:intron | 35.0% | |
! | GTTTTTCCATATACCAAAGC+CGG | - | chr2_4:8622674-8622693 | None:intergenic | 35.0% |
CAGATTCTGTGAACATTTCA+TGG | - | chr2_4:8622968-8622987 | None:intergenic | 35.0% | |
!! | ATATTGATTTGGCTTCACGT+AGG | + | chr2_4:8622995-8623014 | Msa0313260:intron | 35.0% |
AAAAATGGAATGCCTACAAC+AGG | + | chr2_4:8623074-8623093 | Msa0313260:CDS | 35.0% | |
! | GGCATATTTGCAGAAGTTTT+TGG | + | chr2_4:8623167-8623186 | Msa0313260:CDS | 35.0% |
AAAAATATCGCCAAAAGACC+TGG | - | chr2_4:8623273-8623292 | None:intergenic | 35.0% | |
! | AGGTCTTTTGGCGATATTTT+TGG | + | chr2_4:8623272-8623291 | Msa0313260:CDS | 35.0% |
!! | GGCAATTTATTTTCAATGGG+AGG | - | chr2_4:8623353-8623372 | None:intergenic | 35.0% |
AGCCTTGAGGAACTTTATAA+AGG | + | chr2_4:8623377-8623396 | Msa0313260:CDS | 35.0% | |
! | CCTTGAGATCTTCATCTTTT+TGG | - | chr2_4:8623408-8623427 | None:intergenic | 35.0% |
CCAAAAAGATGAAGATCTCA+AGG | + | chr2_4:8623405-8623424 | Msa0313260:CDS | 35.0% | |
GATGTGAATTAAAAAGCCAG+GGG | - | chr2_4:8623463-8623482 | None:intergenic | 35.0% | |
!!! | GCAGAATGAGAGTTTTTTGT+TGG | + | chr2_4:8623521-8623540 | Msa0313260:intron | 35.0% |
CATAACAAGCGAAAGGAAAT+GGG | - | chr2_4:8623704-8623723 | None:intergenic | 35.0% | |
ACATAACAAGCGAAAGGAAA+TGG | - | chr2_4:8623705-8623724 | None:intergenic | 35.0% | |
ATTGTTAGTATTTCCTCCAC+AGG | - | chr2_4:8623787-8623806 | None:intergenic | 35.0% | |
CTAACAATTGAAATCCAACC+AGG | + | chr2_4:8623799-8623818 | Msa0313260:CDS | 35.0% | |
AAAATCACTTTCCCAGAGAA+AGG | + | chr2_4:8623838-8623857 | Msa0313260:CDS | 35.0% | |
ATATCTGCAGCAATGACATT+TGG | - | chr2_4:8623874-8623893 | None:intergenic | 35.0% | |
! | ATCCAAAGTAGTAAGTTGGA+AGG | - | chr2_4:8624010-8624029 | None:intergenic | 35.0% |
TTCCAACTTACTACTTTGGA+TGG | + | chr2_4:8624009-8624028 | Msa0313260:CDS | 35.0% | |
TTCCATCCAAAGTAGTAAGT+TGG | - | chr2_4:8624014-8624033 | None:intergenic | 35.0% | |
AACTTACTACTTTGGATGGA+AGG | + | chr2_4:8624013-8624032 | Msa0313260:CDS | 35.0% | |
ACTTACTACTTTGGATGGAA+GGG | + | chr2_4:8624014-8624033 | Msa0313260:CDS | 35.0% | |
AATTCCATTGTCTATGGCAA+TGG | - | chr2_4:8624046-8624065 | None:intergenic | 35.0% | |
TGGATCAATTCCATTGTCTA+TGG | - | chr2_4:8624052-8624071 | None:intergenic | 35.0% | |
TTTCCAAAAATCCTTCACAG+AGG | + | chr2_4:8624109-8624128 | Msa0313260:CDS | 35.0% | |
TTCCAAAAATCCTTCACAGA+GGG | + | chr2_4:8624110-8624129 | Msa0313260:CDS | 35.0% | |
CCATGAACATTTCTTAGTTC+TGG | - | chr2_4:8624197-8624216 | None:intergenic | 35.0% | |
CCAGAACTAAGAAATGTTCA+TGG | + | chr2_4:8624194-8624213 | Msa0313260:exon | 35.0% | |
AACTATACACAAGATGCACT+TGG | - | chr2_4:8624245-8624264 | None:intergenic | 35.0% | |
AAAGAAAGTCCTACCTTGAG+TGG | + | chr2_4:8621974-8621993 | Msa0313260:five_prime_UTR | 40.0% | |
! | TTTTCTCTTCCACTCAAGGT+AGG | - | chr2_4:8621986-8622005 | None:intergenic | 40.0% |
!! | TCACTTTTCTCTTCCACTCA+AGG | - | chr2_4:8621990-8622009 | None:intergenic | 40.0% |
GAAAAGTGACAGCAAAGTAG+TGG | + | chr2_4:8622001-8622020 | Msa0313260:five_prime_UTR | 40.0% | |
! | ACAGCAAAGTAGTGGAAGAT+GGG | + | chr2_4:8622009-8622028 | Msa0313260:exon | 40.0% |
! | AAAGTAGTGGAAGATGGGTT+TGG | + | chr2_4:8622014-8622033 | Msa0313260:exon | 40.0% |
ACTCATATCCGAAGCATATG+AGG | + | chr2_4:8622170-8622189 | Msa0313260:CDS | 40.0% | |
!! | GATTGCCTTGTTCTCTGTTT+TGG | + | chr2_4:8622279-8622298 | Msa0313260:intron | 40.0% |
TCTGACCAAAACAGAGAACA+AGG | - | chr2_4:8622287-8622306 | None:intergenic | 40.0% | |
ATCTGTGATATACAGTCGGA+TGG | + | chr2_4:8622426-8622445 | Msa0313260:intron | 40.0% | |
TGATAAGCATCATTTGGTCC+AGG | + | chr2_4:8622639-8622658 | Msa0313260:intron | 40.0% | |
GATAAGCATCATTTGGTCCA+GGG | + | chr2_4:8622640-8622659 | Msa0313260:intron | 40.0% | |
TTTCTACGCAGATGATACCT+TGG | + | chr2_4:8622746-8622765 | Msa0313260:intron | 40.0% | |
GGAGAAAGCAGCCTTAAAAA+TGG | + | chr2_4:8623059-8623078 | Msa0313260:CDS | 40.0% | |
CATACTTCCAAACTCAGGAT+GGG | + | chr2_4:8623111-8623130 | Msa0313260:CDS | 40.0% | |
AATATGCCATCTGCACTTCT+GGG | - | chr2_4:8623155-8623174 | None:intergenic | 40.0% | |
AAATATGCCATCTGCACTTC+TGG | - | chr2_4:8623156-8623175 | None:intergenic | 40.0% | |
!!! | TTTGGCTTTTCAAGCCCTTA+TGG | + | chr2_4:8623185-8623204 | Msa0313260:CDS | 40.0% |
TCATTCCCATTCCTCCATAA+GGG | - | chr2_4:8623202-8623221 | None:intergenic | 40.0% | |
TTATGGAGGAATGGGAATGA+GGG | + | chr2_4:8623202-8623221 | Msa0313260:CDS | 40.0% | |
! | TAAATTGCCTTGTAGCCTTG+AGG | + | chr2_4:8623364-8623383 | Msa0313260:CDS | 40.0% |
TAAAGTTCCTCAAGGCTACA+AGG | - | chr2_4:8623374-8623393 | None:intergenic | 40.0% | |
AGGGAAATTGCATATGCAAG+CGG | + | chr2_4:8623425-8623444 | Msa0313260:CDS | 40.0% | |
TTTGCTGCAAACATACATGC+AGG | - | chr2_4:8623758-8623777 | None:intergenic | 40.0% | |
GTTGCTCATTTCCTTTCTCT+GGG | - | chr2_4:8623852-8623871 | None:intergenic | 40.0% | |
CACCTTCCAACTTACTACTT+TGG | + | chr2_4:8624005-8624024 | Msa0313260:CDS | 40.0% | |
CTTACTACTTTGGATGGAAG+GGG | + | chr2_4:8624015-8624034 | Msa0313260:CDS | 40.0% | |
TGATCCAACCTATGAAGAAG+TGG | + | chr2_4:8624065-8624084 | Msa0313260:CDS | 40.0% | |
TCCAAAAATCCTTCACAGAG+GGG | + | chr2_4:8624111-8624130 | Msa0313260:CDS | 40.0% | |
TTTCAGCATCAACAGTGCTA+GGG | - | chr2_4:8624167-8624186 | None:intergenic | 40.0% | |
ACACAAGATGCACTTGGTAA+TGG | - | chr2_4:8624239-8624258 | None:intergenic | 40.0% | |
AAAGAAAGTCCTACCTTGAG+TGG | + | chr2_4:8621974-8621993 | Msa0313260:five_prime_UTR | 40.0% | |
! | TTTTCTCTTCCACTCAAGGT+AGG | - | chr2_4:8621986-8622005 | None:intergenic | 40.0% |
!! | TCACTTTTCTCTTCCACTCA+AGG | - | chr2_4:8621990-8622009 | None:intergenic | 40.0% |
GAAAAGTGACAGCAAAGTAG+TGG | + | chr2_4:8622001-8622020 | Msa0313260:five_prime_UTR | 40.0% | |
! | ACAGCAAAGTAGTGGAAGAT+GGG | + | chr2_4:8622009-8622028 | Msa0313260:exon | 40.0% |
! | AAAGTAGTGGAAGATGGGTT+TGG | + | chr2_4:8622014-8622033 | Msa0313260:exon | 40.0% |
ACTCATATCCGAAGCATATG+AGG | + | chr2_4:8622170-8622189 | Msa0313260:CDS | 40.0% | |
!! | GATTGCCTTGTTCTCTGTTT+TGG | + | chr2_4:8622279-8622298 | Msa0313260:intron | 40.0% |
TCTGACCAAAACAGAGAACA+AGG | - | chr2_4:8622287-8622306 | None:intergenic | 40.0% | |
ATCTGTGATATACAGTCGGA+TGG | + | chr2_4:8622426-8622445 | Msa0313260:intron | 40.0% | |
TGATAAGCATCATTTGGTCC+AGG | + | chr2_4:8622639-8622658 | Msa0313260:intron | 40.0% | |
GATAAGCATCATTTGGTCCA+GGG | + | chr2_4:8622640-8622659 | Msa0313260:intron | 40.0% | |
TTTCTACGCAGATGATACCT+TGG | + | chr2_4:8622746-8622765 | Msa0313260:intron | 40.0% | |
GGAGAAAGCAGCCTTAAAAA+TGG | + | chr2_4:8623059-8623078 | Msa0313260:CDS | 40.0% | |
CATACTTCCAAACTCAGGAT+GGG | + | chr2_4:8623111-8623130 | Msa0313260:CDS | 40.0% | |
AATATGCCATCTGCACTTCT+GGG | - | chr2_4:8623155-8623174 | None:intergenic | 40.0% | |
AAATATGCCATCTGCACTTC+TGG | - | chr2_4:8623156-8623175 | None:intergenic | 40.0% | |
!!! | TTTGGCTTTTCAAGCCCTTA+TGG | + | chr2_4:8623185-8623204 | Msa0313260:CDS | 40.0% |
TCATTCCCATTCCTCCATAA+GGG | - | chr2_4:8623202-8623221 | None:intergenic | 40.0% | |
TTATGGAGGAATGGGAATGA+GGG | + | chr2_4:8623202-8623221 | Msa0313260:CDS | 40.0% | |
! | TAAATTGCCTTGTAGCCTTG+AGG | + | chr2_4:8623364-8623383 | Msa0313260:CDS | 40.0% |
TAAAGTTCCTCAAGGCTACA+AGG | - | chr2_4:8623374-8623393 | None:intergenic | 40.0% | |
AGGGAAATTGCATATGCAAG+CGG | + | chr2_4:8623425-8623444 | Msa0313260:CDS | 40.0% | |
TTTGCTGCAAACATACATGC+AGG | - | chr2_4:8623758-8623777 | None:intergenic | 40.0% | |
GTTGCTCATTTCCTTTCTCT+GGG | - | chr2_4:8623852-8623871 | None:intergenic | 40.0% | |
CACCTTCCAACTTACTACTT+TGG | + | chr2_4:8624005-8624024 | Msa0313260:CDS | 40.0% | |
CTTACTACTTTGGATGGAAG+GGG | + | chr2_4:8624015-8624034 | Msa0313260:CDS | 40.0% | |
TGATCCAACCTATGAAGAAG+TGG | + | chr2_4:8624065-8624084 | Msa0313260:CDS | 40.0% | |
TCCAAAAATCCTTCACAGAG+GGG | + | chr2_4:8624111-8624130 | Msa0313260:CDS | 40.0% | |
TTTCAGCATCAACAGTGCTA+GGG | - | chr2_4:8624167-8624186 | None:intergenic | 40.0% | |
ACACAAGATGCACTTGGTAA+TGG | - | chr2_4:8624239-8624258 | None:intergenic | 40.0% | |
! | GACAGCAAAGTAGTGGAAGA+TGG | + | chr2_4:8622008-8622027 | Msa0313260:exon | 45.0% |
TCAATTCATGGACCATGCTG+TGG | + | chr2_4:8622925-8622944 | Msa0313260:intron | 45.0% | |
CAATTCATGGACCATGCTGT+GGG | + | chr2_4:8622926-8622945 | Msa0313260:intron | 45.0% | |
AATTCATGGACCATGCTGTG+GGG | + | chr2_4:8622927-8622946 | Msa0313260:intron | 45.0% | |
AGCTCCATACTTCCAAACTC+AGG | + | chr2_4:8623106-8623125 | Msa0313260:CDS | 45.0% | |
CCATCCTGAGTTTGGAAGTA+TGG | - | chr2_4:8623113-8623132 | None:intergenic | 45.0% | |
CCATACTTCCAAACTCAGGA+TGG | + | chr2_4:8623110-8623129 | Msa0313260:CDS | 45.0% | |
! | TTCAATCCCAGAAGTGCAGA+TGG | + | chr2_4:8623146-8623165 | Msa0313260:CDS | 45.0% |
TTCAAGCCCTTATGGAGGAA+TGG | + | chr2_4:8623193-8623212 | Msa0313260:CDS | 45.0% | |
TCAAGCCCTTATGGAGGAAT+GGG | + | chr2_4:8623194-8623213 | Msa0313260:CDS | 45.0% | |
CTCATTCCCATTCCTCCATA+AGG | - | chr2_4:8623203-8623222 | None:intergenic | 45.0% | |
CTTATGGAGGAATGGGAATG+AGG | + | chr2_4:8623201-8623220 | Msa0313260:CDS | 45.0% | |
TATGGAGGAATGGGAATGAG+GGG | + | chr2_4:8623203-8623222 | Msa0313260:CDS | 45.0% | |
GGGAAATTGCATATGCAAGC+GGG | + | chr2_4:8623426-8623445 | Msa0313260:CDS | 45.0% | |
AGGCACACATAACAAGCGAA+AGG | - | chr2_4:8623711-8623730 | None:intergenic | 45.0% | |
TTGCAGCAAAACTGTACCTG+TGG | + | chr2_4:8623768-8623787 | Msa0313260:intron | 45.0% | |
CAATTGAAATCCAACCAGGC+TGG | + | chr2_4:8623803-8623822 | Msa0313260:CDS | 45.0% | |
AATCCAACCAGGCTGGAAAA+AGG | + | chr2_4:8623810-8623829 | Msa0313260:CDS | 45.0% | |
ATCCAACCAGGCTGGAAAAA+GGG | + | chr2_4:8623811-8623830 | Msa0313260:CDS | 45.0% | |
! | TTTGTTCCCTTTTTCCAGCC+TGG | - | chr2_4:8623820-8623839 | None:intergenic | 45.0% |
GGTTGCTCATTTCCTTTCTC+TGG | - | chr2_4:8623853-8623872 | None:intergenic | 45.0% | |
CTGACCATTGCCATAGACAA+TGG | + | chr2_4:8624039-8624058 | Msa0313260:CDS | 45.0% | |
GCAACCACTTCTTCATAGGT+TGG | - | chr2_4:8624072-8624091 | None:intergenic | 45.0% | |
ACCTATGAAGAAGTGGTTGC+CGG | + | chr2_4:8624072-8624091 | Msa0313260:CDS | 45.0% | |
! | ACCCCTCTGTGAAGGATTTT+TGG | - | chr2_4:8624115-8624134 | None:intergenic | 45.0% |
CTAAGATTACCCCTCTGTGA+AGG | - | chr2_4:8624123-8624142 | None:intergenic | 45.0% | |
CTTCACAGAGGGGTAATCTT+AGG | + | chr2_4:8624121-8624140 | Msa0313260:CDS | 45.0% | |
GTTTCAGCATCAACAGTGCT+AGG | - | chr2_4:8624168-8624187 | None:intergenic | 45.0% | |
! | GACAGCAAAGTAGTGGAAGA+TGG | + | chr2_4:8622008-8622027 | Msa0313260:exon | 45.0% |
TCAATTCATGGACCATGCTG+TGG | + | chr2_4:8622925-8622944 | Msa0313260:intron | 45.0% | |
CAATTCATGGACCATGCTGT+GGG | + | chr2_4:8622926-8622945 | Msa0313260:intron | 45.0% | |
AATTCATGGACCATGCTGTG+GGG | + | chr2_4:8622927-8622946 | Msa0313260:intron | 45.0% | |
AGCTCCATACTTCCAAACTC+AGG | + | chr2_4:8623106-8623125 | Msa0313260:CDS | 45.0% | |
CCATCCTGAGTTTGGAAGTA+TGG | - | chr2_4:8623113-8623132 | None:intergenic | 45.0% | |
CCATACTTCCAAACTCAGGA+TGG | + | chr2_4:8623110-8623129 | Msa0313260:CDS | 45.0% | |
! | TTCAATCCCAGAAGTGCAGA+TGG | + | chr2_4:8623146-8623165 | Msa0313260:CDS | 45.0% |
TTCAAGCCCTTATGGAGGAA+TGG | + | chr2_4:8623193-8623212 | Msa0313260:CDS | 45.0% | |
TCAAGCCCTTATGGAGGAAT+GGG | + | chr2_4:8623194-8623213 | Msa0313260:CDS | 45.0% | |
CTCATTCCCATTCCTCCATA+AGG | - | chr2_4:8623203-8623222 | None:intergenic | 45.0% | |
CTTATGGAGGAATGGGAATG+AGG | + | chr2_4:8623201-8623220 | Msa0313260:CDS | 45.0% | |
TATGGAGGAATGGGAATGAG+GGG | + | chr2_4:8623203-8623222 | Msa0313260:CDS | 45.0% | |
GGGAAATTGCATATGCAAGC+GGG | + | chr2_4:8623426-8623445 | Msa0313260:CDS | 45.0% | |
AGGCACACATAACAAGCGAA+AGG | - | chr2_4:8623711-8623730 | None:intergenic | 45.0% | |
TTGCAGCAAAACTGTACCTG+TGG | + | chr2_4:8623768-8623787 | Msa0313260:intron | 45.0% | |
CAATTGAAATCCAACCAGGC+TGG | + | chr2_4:8623803-8623822 | Msa0313260:CDS | 45.0% | |
AATCCAACCAGGCTGGAAAA+AGG | + | chr2_4:8623810-8623829 | Msa0313260:CDS | 45.0% | |
ATCCAACCAGGCTGGAAAAA+GGG | + | chr2_4:8623811-8623830 | Msa0313260:CDS | 45.0% | |
! | TTTGTTCCCTTTTTCCAGCC+TGG | - | chr2_4:8623820-8623839 | None:intergenic | 45.0% |
GGTTGCTCATTTCCTTTCTC+TGG | - | chr2_4:8623853-8623872 | None:intergenic | 45.0% | |
CTGACCATTGCCATAGACAA+TGG | + | chr2_4:8624039-8624058 | Msa0313260:CDS | 45.0% | |
GCAACCACTTCTTCATAGGT+TGG | - | chr2_4:8624072-8624091 | None:intergenic | 45.0% | |
ACCTATGAAGAAGTGGTTGC+CGG | + | chr2_4:8624072-8624091 | Msa0313260:CDS | 45.0% | |
! | ACCCCTCTGTGAAGGATTTT+TGG | - | chr2_4:8624115-8624134 | None:intergenic | 45.0% |
CTAAGATTACCCCTCTGTGA+AGG | - | chr2_4:8624123-8624142 | None:intergenic | 45.0% | |
CTTCACAGAGGGGTAATCTT+AGG | + | chr2_4:8624121-8624140 | Msa0313260:CDS | 45.0% | |
GTTTCAGCATCAACAGTGCT+AGG | - | chr2_4:8624168-8624187 | None:intergenic | 45.0% | |
!! | CTTGTCAGGGTGCCATTTCA+TGG | - | chr2_4:8622112-8622131 | None:intergenic | 50.0% |
! | CGATCTCCGGCTTTGGTATA+TGG | + | chr2_4:8622665-8622684 | Msa0313260:intron | 50.0% |
AGTTGTACATCCCCACAGCA+TGG | - | chr2_4:8622940-8622959 | None:intergenic | 50.0% | |
TCCAAACTCAGGATGGGAGA+AGG | + | chr2_4:8623117-8623136 | Msa0313260:CDS | 50.0% | |
ACCTTCTCCCATCCTGAGTT+TGG | - | chr2_4:8623121-8623140 | None:intergenic | 50.0% | |
CTCAGGATGGGAGAAGGTTT+AGG | + | chr2_4:8623123-8623142 | Msa0313260:CDS | 50.0% | |
!! | GGCTTTTCAAGCCCTTATGG+AGG | + | chr2_4:8623188-8623207 | Msa0313260:CDS | 50.0% |
CAGCAAAACTGTACCTGTGG+AGG | + | chr2_4:8623771-8623790 | Msa0313260:intron | 50.0% | |
! | TTCCCTTTTTCCAGCCTGGT+TGG | - | chr2_4:8623816-8623835 | None:intergenic | 50.0% |
!! | CTTGTCAGGGTGCCATTTCA+TGG | - | chr2_4:8622112-8622131 | None:intergenic | 50.0% |
! | CGATCTCCGGCTTTGGTATA+TGG | + | chr2_4:8622665-8622684 | Msa0313260:intron | 50.0% |
AGTTGTACATCCCCACAGCA+TGG | - | chr2_4:8622940-8622959 | None:intergenic | 50.0% | |
TCCAAACTCAGGATGGGAGA+AGG | + | chr2_4:8623117-8623136 | Msa0313260:CDS | 50.0% | |
ACCTTCTCCCATCCTGAGTT+TGG | - | chr2_4:8623121-8623140 | None:intergenic | 50.0% | |
CTCAGGATGGGAGAAGGTTT+AGG | + | chr2_4:8623123-8623142 | Msa0313260:CDS | 50.0% | |
!! | GGCTTTTCAAGCCCTTATGG+AGG | + | chr2_4:8623188-8623207 | Msa0313260:CDS | 50.0% |
CAGCAAAACTGTACCTGTGG+AGG | + | chr2_4:8623771-8623790 | Msa0313260:intron | 50.0% | |
! | TTCCCTTTTTCCAGCCTGGT+TGG | - | chr2_4:8623816-8623835 | None:intergenic | 50.0% |
TTGGTCCAGGGTTCGATCTC+CGG | + | chr2_4:8622652-8622671 | Msa0313260:intron | 55.0% | |
GCTGCACTGTCACCTGTTGT+AGG | - | chr2_4:8623089-8623108 | None:intergenic | 55.0% | |
! | TCGTGGGTGTCCAGGTCTTT+TGG | + | chr2_4:8623260-8623279 | Msa0313260:CDS | 55.0% |
GAGTCAAGCTCCAAGACGCA+AGG | + | chr2_4:8623325-8623344 | Msa0313260:CDS | 55.0% | |
GCCGGCAACCACTTCTTCAT+AGG | - | chr2_4:8624076-8624095 | None:intergenic | 55.0% | |
AAGAAGTGGTTGCCGGCGAA+GGG | + | chr2_4:8624079-8624098 | Msa0313260:CDS | 55.0% | |
GGAAATTGGCATCCCTTCGC+CGG | - | chr2_4:8624094-8624113 | None:intergenic | 55.0% | |
TTGGTCCAGGGTTCGATCTC+CGG | + | chr2_4:8622652-8622671 | Msa0313260:intron | 55.0% | |
GCTGCACTGTCACCTGTTGT+AGG | - | chr2_4:8623089-8623108 | None:intergenic | 55.0% | |
! | TCGTGGGTGTCCAGGTCTTT+TGG | + | chr2_4:8623260-8623279 | Msa0313260:CDS | 55.0% |
GAGTCAAGCTCCAAGACGCA+AGG | + | chr2_4:8623325-8623344 | Msa0313260:CDS | 55.0% | |
GCCGGCAACCACTTCTTCAT+AGG | - | chr2_4:8624076-8624095 | None:intergenic | 55.0% | |
AAGAAGTGGTTGCCGGCGAA+GGG | + | chr2_4:8624079-8624098 | Msa0313260:CDS | 55.0% | |
GGAAATTGGCATCCCTTCGC+CGG | - | chr2_4:8624094-8624113 | None:intergenic | 55.0% | |
CAAAGCCGGAGATCGAACCC+TGG | - | chr2_4:8622660-8622679 | None:intergenic | 60.0% | |
CAGGGTTCGATCTCCGGCTT+TGG | + | chr2_4:8622658-8622677 | Msa0313260:intron | 60.0% | |
GGAGGAATGGGAATGAGGGG+CGG | + | chr2_4:8623206-8623225 | Msa0313260:CDS | 60.0% | |
! | TGCAGAGGCATGGGCATGAG+AGG | + | chr2_4:8623233-8623252 | Msa0313260:CDS | 60.0% |
TGGGCATGAGAGGTCAGTCG+TGG | + | chr2_4:8623243-8623262 | Msa0313260:CDS | 60.0% | |
GGGCATGAGAGGTCAGTCGT+GGG | + | chr2_4:8623244-8623263 | Msa0313260:CDS | 60.0% | |
!! | ATGGGAGGTGCCTTGCGTCT+TGG | - | chr2_4:8623338-8623357 | None:intergenic | 60.0% |
GCGGGTAAATGCTCTTCCCC+TGG | + | chr2_4:8623444-8623463 | Msa0313260:intron | 60.0% | |
GAAGAAGTGGTTGCCGGCGA+AGG | + | chr2_4:8624078-8624097 | Msa0313260:CDS | 60.0% | |
CAAAGCCGGAGATCGAACCC+TGG | - | chr2_4:8622660-8622679 | None:intergenic | 60.0% | |
CAGGGTTCGATCTCCGGCTT+TGG | + | chr2_4:8622658-8622677 | Msa0313260:intron | 60.0% | |
GGAGGAATGGGAATGAGGGG+CGG | + | chr2_4:8623206-8623225 | Msa0313260:CDS | 60.0% | |
! | TGCAGAGGCATGGGCATGAG+AGG | + | chr2_4:8623233-8623252 | Msa0313260:CDS | 60.0% |
TGGGCATGAGAGGTCAGTCG+TGG | + | chr2_4:8623243-8623262 | Msa0313260:CDS | 60.0% | |
GGGCATGAGAGGTCAGTCGT+GGG | + | chr2_4:8623244-8623263 | Msa0313260:CDS | 60.0% | |
!! | ATGGGAGGTGCCTTGCGTCT+TGG | - | chr2_4:8623338-8623357 | None:intergenic | 60.0% |
GCGGGTAAATGCTCTTCCCC+TGG | + | chr2_4:8623444-8623463 | Msa0313260:intron | 60.0% | |
GAAGAAGTGGTTGCCGGCGA+AGG | + | chr2_4:8624078-8624097 | Msa0313260:CDS | 60.0% | |
GGAATGGGAATGAGGGGCGG+CGG | + | chr2_4:8623209-8623228 | Msa0313260:CDS | 65.0% | |
GAGGTCAGTCGTGGGTGTCC+AGG | + | chr2_4:8623252-8623271 | Msa0313260:CDS | 65.0% | |
GGAATGGGAATGAGGGGCGG+CGG | + | chr2_4:8623209-8623228 | Msa0313260:CDS | 65.0% | |
GAGGTCAGTCGTGGGTGTCC+AGG | + | chr2_4:8623252-8623271 | Msa0313260:CDS | 65.0% | |
ATGAGGGGCGGCGGCTGCAG+AGG | + | chr2_4:8623218-8623237 | Msa0313260:CDS | 75.0% | |
! | GGCGGCGGCTGCAGAGGCAT+GGG | + | chr2_4:8623224-8623243 | Msa0313260:CDS | 75.0% |
ATGAGGGGCGGCGGCTGCAG+AGG | + | chr2_4:8623218-8623237 | Msa0313260:CDS | 75.0% | |
! | GGCGGCGGCTGCAGAGGCAT+GGG | + | chr2_4:8623224-8623243 | Msa0313260:CDS | 75.0% |
! | GGGCGGCGGCTGCAGAGGCA+TGG | + | chr2_4:8623223-8623242 | Msa0313260:CDS | 80.0% |
! | GGGCGGCGGCTGCAGAGGCA+TGG | + | chr2_4:8623223-8623242 | Msa0313260:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 8621913 | 8624339 | 8621913 | ID=Msa0313260;Name=Msa0313260 |
chr2_4 | mRNA | 8621913 | 8624339 | 8621913 | ID=Msa0313260-mRNA-1;Parent=Msa0313260;Name=Msa0313260-mRNA-1;_AED=0.38;_eAED=0.38;_QI=114|1|1|1|1|1|3|136|341 |
chr2_4 | exon | 8621913 | 8622191 | 8621913 | ID=Msa0313260-mRNA-1:exon:3284;Parent=Msa0313260-mRNA-1 |
chr2_4 | exon | 8623017 | 8623447 | 8623017 | ID=Msa0313260-mRNA-1:exon:3285;Parent=Msa0313260-mRNA-1 |
chr2_4 | exon | 8623774 | 8624339 | 8623774 | ID=Msa0313260-mRNA-1:exon:3286;Parent=Msa0313260-mRNA-1 |
chr2_4 | five_prime_UTR | 8621913 | 8622026 | 8621913 | ID=Msa0313260-mRNA-1:five_prime_utr;Parent=Msa0313260-mRNA-1 |
chr2_4 | CDS | 8622027 | 8622191 | 8622027 | ID=Msa0313260-mRNA-1:cds;Parent=Msa0313260-mRNA-1 |
chr2_4 | CDS | 8623017 | 8623447 | 8623017 | ID=Msa0313260-mRNA-1:cds;Parent=Msa0313260-mRNA-1 |
chr2_4 | CDS | 8623774 | 8624203 | 8623774 | ID=Msa0313260-mRNA-1:cds;Parent=Msa0313260-mRNA-1 |
chr2_4 | three_prime_UTR | 8624204 | 8624339 | 8624204 | ID=Msa0313260-mRNA-1:three_prime_utr;Parent=Msa0313260-mRNA-1 |
Gene Sequence |
Protein sequence |