AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0316260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0316260 MtrunA17_Chr2g0288021 90.712 323 15 2 1 308 1 323 0.0 604
Msa0316260 MtrunA17_Chr2g0288021 91.367 139 10 1 308 446 385 521 3.59e-83 265
Msa0316260 MtrunA17_Chr4g0074551 62.658 316 104 1 5 306 21 336 3.15e-137 405
Msa0316260 MtrunA17_Chr4g0074551 58.594 128 53 0 307 434 399 526 7.41e-46 167
Msa0316260 MtrunA17_Chr4g0074561 64.236 288 86 2 36 306 37 324 1.61e-132 392
Msa0316260 MtrunA17_Chr4g0074561 62.500 128 48 0 308 435 388 515 8.01e-52 182
Msa0316260 MtrunA17_Chr2g0288071 62.046 303 100 1 16 303 49 351 2.31e-132 392
Msa0316260 MtrunA17_Chr2g0288071 65.354 127 44 0 308 434 418 544 9.64e-50 177
Msa0316260 MtrunA17_Chr4g0043091 41.649 485 204 7 28 434 22 505 2.01e-127 378
Msa0316260 MtrunA17_Chr4g0042171 40.795 478 201 10 33 430 23 498 7.00e-119 357
Msa0316260 MtrunA17_Chr6g0482951 40.421 475 206 8 34 434 43 514 8.16e-118 354
Msa0316260 MtrunA17_Chr3g0090131 40.208 480 202 7 34 438 21 490 8.00e-117 351
Msa0316260 MtrunA17_Chr3g0090111 39.228 492 214 8 21 438 7 487 1.40e-116 350
Msa0316260 MtrunA17_Chr3g0088441 40.456 482 209 7 33 436 37 518 5.97e-115 347
Msa0316260 MtrunA17_Chr3g0087261 38.264 507 226 7 11 435 11 512 1.88e-114 345
Msa0316260 MtrunA17_Chr6g0482941 38.327 514 236 11 1 434 2 514 2.38e-114 345
Msa0316260 MtrunA17_Chr4g0033401 39.413 477 211 7 33 431 33 509 3.69e-111 337
Msa0316260 MtrunA17_Chr6g0482081 39.754 488 212 11 30 437 32 517 4.78e-110 334
Msa0316260 MtrunA17_Chr6g0482131 38.669 481 217 8 30 432 32 512 4.79e-110 334
Msa0316260 MtrunA17_Chr7g0242681 40.000 470 201 10 34 430 38 499 6.88e-110 334
Msa0316260 MtrunA17_Chr2g0317841 49.688 320 145 3 1 306 1 318 1.43e-108 331
Msa0316260 MtrunA17_Chr2g0317841 53.226 124 58 0 308 431 381 504 3.55e-38 145
Msa0316260 MtrunA17_Chr6g0482071 38.012 513 231 11 5 434 7 515 3.35e-108 330
Msa0316260 MtrunA17_Chr4g0033271 39.958 478 207 11 34 432 35 511 6.67e-108 328
Msa0316260 MtrunA17_Chr7g0242691 37.778 495 230 11 5 430 8 493 1.56e-105 323
Msa0316260 MtrunA17_Chr2g0317821 48.750 320 148 3 1 306 1 318 2.05e-105 323
Msa0316260 MtrunA17_Chr2g0317821 54.032 124 57 0 308 431 381 504 2.75e-38 145
Msa0316260 MtrunA17_Chr4g0006971 37.844 473 214 9 32 431 25 490 5.32e-105 321
Msa0316260 MtrunA17_Chr4g0010501 37.400 500 226 11 14 432 1 494 1.08e-104 320
Msa0316260 MtrunA17_Chr3g0087271 37.549 514 241 7 1 435 1 513 3.50e-104 319
Msa0316260 MtrunA17_Chr5g0428831 36.605 489 233 9 13 430 6 488 6.09e-104 318
Msa0316260 MtrunA17_Chr4g0033341 39.293 509 221 13 8 433 41 544 1.01e-103 319
Msa0316260 MtrunA17_Chr1g0195611 36.401 489 233 8 13 430 6 487 2.61e-103 317
Msa0316260 MtrunA17_Chr2g0329321 35.603 514 223 10 1 432 1 488 2.87e-103 316
Msa0316260 MtrunA17_Chr4g0033261 37.251 502 209 11 12 432 17 493 8.01e-98 302
Msa0316260 MtrunA17_Chr2g0329201 46.226 318 153 4 7 306 3 320 7.15e-94 292
Msa0316260 MtrunA17_Chr2g0329201 39.098 133 78 2 302 433 378 508 1.14e-24 106
Msa0316260 MtrunA17_Chr5g0418871 54.065 246 111 2 62 306 25 269 1.10e-90 278
Msa0316260 MtrunA17_Chr4g0033311 45.370 324 147 5 11 306 7 328 4.70e-90 283
Msa0316260 MtrunA17_Chr4g0033311 45.736 129 69 1 309 436 391 519 5.39e-30 122
Msa0316260 MtrunA17_Chr4g0033331 48.454 291 133 3 33 306 38 328 1.23e-89 281
Msa0316260 MtrunA17_Chr4g0033331 41.732 127 73 1 306 431 388 514 1.15e-25 109
Msa0316260 MtrunA17_Chr4g0033191 45.890 292 141 3 32 306 41 332 1.60e-87 276
Msa0316260 MtrunA17_Chr4g0033191 42.424 132 73 2 302 432 390 519 1.10e-26 112
Msa0316260 MtrunA17_Chr4g0033201 46.233 292 140 3 32 306 34 325 4.48e-87 275
Msa0316260 MtrunA17_Chr4g0033201 43.182 132 72 2 302 432 383 512 1.50e-27 114
Msa0316260 MtrunA17_Chr2g0329191 45.017 291 144 2 32 306 32 322 4.85e-87 275
Msa0316260 MtrunA17_Chr2g0329191 41.732 127 73 1 308 433 384 510 9.16e-27 112
Msa0316260 MtrunA17_Chr1g0195641 43.945 289 147 4 32 306 25 312 6.29e-85 266
Msa0316260 MtrunA17_Chr4g0033321 46.552 290 138 3 34 306 33 322 5.67e-84 267
Msa0316260 MtrunA17_Chr4g0033321 41.732 127 73 1 306 431 382 508 4.83e-25 107
Msa0316260 MtrunA17_Chr4g0033231 36.325 468 218 14 33 433 40 494 7.93e-84 266
Msa0316260 MtrunA17_Chr4g0006111 43.214 280 120 3 34 298 65 320 6.18e-73 238
Msa0316260 MtrunA17_Chr4g0006111 42.222 135 74 2 302 435 397 528 1.40e-29 120
Msa0316260 MtrunA17_Chr5g0430451 42.140 299 123 4 33 306 38 311 7.35e-71 232
Msa0316260 MtrunA17_Chr5g0430451 44.030 134 68 4 302 432 369 498 5.17e-28 116
Msa0316260 MtrunA17_Chr4g0006131 40.625 288 131 4 34 306 42 304 1.09e-67 224
Msa0316260 MtrunA17_Chr4g0006131 42.424 132 73 2 309 438 376 506 1.61e-28 117
Msa0316260 MtrunA17_Chr7g0230651 41.935 248 134 4 62 306 14 254 5.31e-62 206
Msa0316260 MtrunA17_Chr3g0087201 36.145 332 149 9 161 432 16 344 7.67e-59 196
Msa0316260 MtrunA17_Chr7g0234131 39.721 287 155 6 33 306 70 351 4.86e-56 194
Msa0316260 MtrunA17_Chr7g0234131 33.613 119 73 2 314 431 420 533 1.71e-17 84.7
Msa0316260 MtrunA17_Chr7g0234111 38.144 291 162 5 27 306 68 351 4.65e-55 191
Msa0316260 MtrunA17_Chr7g0234111 35.294 119 71 2 314 431 419 532 8.17e-19 89.0
Msa0316260 MtrunA17_Chr7g0234091 38.676 287 158 6 33 306 70 351 7.98e-54 188
Msa0316260 MtrunA17_Chr7g0234091 37.815 119 68 2 314 431 419 532 5.26e-21 95.5
Msa0316260 MtrunA17_Chr2g0301231 41.475 217 98 3 87 298 1 193 1.02e-50 176
Msa0316260 MtrunA17_Chr2g0301231 42.276 123 70 1 311 432 270 392 6.21e-29 117
Msa0316260 MtrunA17_Chr7g0227561 33.228 316 149 8 1 287 1 283 4.69e-49 169
Msa0316260 MtrunA17_Chr3g0087191 43.713 167 71 3 10 160 5 164 9.53e-41 143
Msa0316260 MtrunA17_Chr2g0288031 95.000 60 3 0 170 229 4 63 7.09e-36 126
Msa0316260 MtrunA17_Chr7g0236731 37.563 197 117 2 111 306 32 223 7.38e-36 134
Msa0316260 MtrunA17_Chr4g0068871 26.273 373 235 12 83 434 183 536 9.80e-25 107
Msa0316260 MtrunA17_Chr5g0418861 50.000 80 38 2 354 431 12 91 2.31e-19 82.8
Msa0316260 MtrunA17_Chr7g0227591 48.214 56 28 1 379 433 13 68 4.78e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0316260 AT4G21760.1 54.409 465 141 4 39 437 59 518 1.17e-179 513
Msa0316260 AT4G21760.2 65.603 282 83 1 39 306 59 340 1.46e-136 403
Msa0316260 AT4G21760.2 56.154 130 52 1 308 437 404 528 1.88e-42 157
Msa0316260 AT1G61810.4 61.806 288 95 1 34 306 33 320 5.94e-130 382
Msa0316260 AT1G61810.1 61.806 288 95 1 34 306 33 320 1.28e-128 382
Msa0316260 AT1G61810.1 54.887 133 60 0 307 439 384 516 2.82e-45 165
Msa0316260 AT1G61810.3 61.806 288 95 1 34 306 33 320 1.29e-128 383
Msa0316260 AT1G61810.3 54.464 112 51 0 307 418 384 495 2.71e-36 140
Msa0316260 AT1G61820.1 57.556 311 114 2 11 306 10 317 2.58e-128 381
Msa0316260 AT1G61820.1 55.385 130 58 0 307 436 381 510 4.59e-45 164
Msa0316260 AT1G61810.2 60.821 268 90 1 34 286 33 300 1.09e-119 352
Msa0316260 AT2G25630.1 40.693 462 209 8 34 434 30 487 1.15e-115 348
Msa0316260 AT5G36890.2 38.429 471 205 6 37 431 19 480 7.67e-114 343
Msa0316260 AT5G36890.1 38.429 471 205 6 37 431 19 480 8.32e-114 343
Msa0316260 AT2G44450.1 40.619 485 209 10 30 435 21 505 2.63e-112 340
Msa0316260 AT1G60090.1 38.384 495 227 11 6 430 3 489 3.17e-111 337
Msa0316260 AT4G22100.1 36.078 510 234 11 1 438 1 490 3.43e-111 337
Msa0316260 AT2G44480.1 39.004 482 217 8 27 431 28 509 1.62e-109 333
Msa0316260 AT2G44480.3 39.004 482 217 8 27 431 59 540 3.08e-109 333
Msa0316260 AT1G26560.1 38.703 478 213 9 33 431 31 507 6.59e-109 331
Msa0316260 AT5G42260.1 40.598 468 204 9 33 426 30 497 7.41e-109 331
Msa0316260 AT1G45191.4 36.511 493 244 8 10 438 4 491 9.08e-108 328
Msa0316260 AT1G02850.2 39.485 466 205 8 35 430 27 485 2.35e-106 324
Msa0316260 AT1G60090.2 37.959 490 229 12 6 430 3 482 2.95e-105 322
Msa0316260 AT3G60130.1 38.174 482 214 9 29 431 25 501 1.27e-104 320
Msa0316260 AT1G61810.5 65.000 220 77 0 87 306 1 220 1.57e-104 317
Msa0316260 AT1G61810.5 54.887 133 60 0 307 439 284 416 5.46e-46 165
Msa0316260 AT5G25980.2 37.060 483 224 9 28 432 44 524 8.01e-104 319
Msa0316260 AT1G02850.5 37.832 489 204 9 35 430 27 508 7.51e-102 313
Msa0316260 AT1G02850.4 37.755 490 204 10 35 430 27 509 4.55e-100 309
Msa0316260 AT1G45191.2 35.152 495 254 9 10 438 4 497 1.24e-99 307
Msa0316260 AT1G45191.6 35.000 500 253 10 10 438 4 502 1.51e-98 305
Msa0316260 AT5G26000.1 36.047 516 229 12 11 431 3 512 1.24e-97 303
Msa0316260 AT3G18070.3 35.908 479 215 9 34 434 30 494 2.75e-97 301
Msa0316260 AT3G18070.1 36.326 479 219 9 34 434 30 500 4.31e-97 301
Msa0316260 AT1G45191.1 34.180 512 253 10 10 438 4 514 1.42e-96 300
Msa0316260 AT3G62750.1 34.504 484 245 7 17 437 6 480 1.52e-96 299
Msa0316260 AT3G62750.2 34.504 484 245 7 17 437 32 506 2.47e-96 299
Msa0316260 AT5G54570.3 49.828 291 127 4 33 306 29 317 2.48e-96 297
Msa0316260 AT5G54570.1 49.828 291 127 4 33 306 29 317 2.22e-95 297
Msa0316260 AT5G54570.1 43.443 122 67 2 311 430 384 505 4.19e-27 114
Msa0316260 AT1G02850.1 37.554 466 187 9 35 430 27 458 3.68e-95 295
Msa0316260 AT3G62740.1 34.483 493 236 9 18 437 7 485 9.55e-95 295
Msa0316260 AT1G47600.2 36.774 465 219 10 39 432 50 510 1.21e-94 295
Msa0316260 AT3G18080.1 47.038 287 137 2 34 306 39 324 4.83e-94 293
Msa0316260 AT3G18080.1 40.580 138 78 2 296 433 377 510 8.56e-25 107
Msa0316260 AT5G44640.1 50.530 283 123 3 33 298 30 312 7.34e-94 292
Msa0316260 AT5G44640.1 38.806 134 75 3 302 434 378 505 2.65e-24 105
Msa0316260 AT3G60130.3 39.356 404 187 7 81 431 40 438 9.87e-93 288
Msa0316260 AT2G44480.2 38.329 407 189 7 87 431 1 407 1.51e-91 283
Msa0316260 AT2G44480.4 47.635 296 139 2 27 306 59 354 2.60e-91 282
Msa0316260 AT3G60130.2 38.554 415 186 8 81 431 40 449 1.15e-90 283
Msa0316260 AT1G47600.1 35.837 466 223 9 39 432 50 511 1.57e-89 281
Msa0316260 AT3G18070.4 45.296 287 140 3 34 306 30 313 4.03e-89 276
Msa0316260 AT4G27830.1 42.105 304 161 4 17 306 6 308 5.16e-86 272
Msa0316260 AT4G27830.1 38.710 124 66 3 317 437 375 491 3.85e-22 99.4
Msa0316260 AT1G60270.1 41.956 317 162 5 1 306 1 306 1.48e-85 267
Msa0316260 AT5G25980.3 35.915 426 196 7 28 378 44 467 2.60e-85 269
Msa0316260 AT5G25980.1 35.915 426 196 7 28 378 44 467 2.60e-85 269
Msa0316260 AT2G44460.1 37.924 472 212 15 39 430 34 504 4.55e-85 272
Msa0316260 AT1G45191.3 41.558 308 168 4 10 306 4 310 1.01e-83 263
Msa0316260 AT1G45191.5 41.558 308 168 4 10 306 4 310 1.26e-83 263
Msa0316260 AT1G02850.3 43.506 308 137 5 35 306 27 333 1.13e-82 261
Msa0316260 AT4G27820.1 44.483 290 149 3 28 306 17 305 3.36e-82 262
Msa0316260 AT4G27820.1 40.323 124 64 3 317 437 373 489 2.33e-23 102
Msa0316260 AT3G62750.7 41.000 300 158 3 17 306 6 296 9.56e-81 254
Msa0316260 AT3G62750.8 41.000 300 158 3 17 306 6 296 9.56e-81 254
Msa0316260 AT3G62750.3 41.000 300 158 3 17 306 32 322 6.22e-80 254
Msa0316260 AT5G26000.2 42.593 324 157 6 11 306 3 325 6.59e-80 255
Msa0316260 AT3G62740.2 34.339 431 198 8 18 377 7 423 2.96e-79 252
Msa0316260 AT3G62750.4 41.000 300 158 3 17 306 32 322 3.00e-79 253
Msa0316260 AT5G28510.1 34.211 494 239 13 32 440 37 529 6.49e-79 254
Msa0316260 AT1G51470.1 44.792 288 140 5 34 306 45 328 7.46e-79 254
Msa0316260 AT1G51470.1 34.711 121 78 1 313 432 391 511 3.88e-18 87.0
Msa0316260 AT1G61820.3 62.286 175 66 0 132 306 4 178 1.62e-78 249
Msa0316260 AT1G61820.3 55.385 130 58 0 307 436 242 371 3.33e-46 164
Msa0316260 AT3G62750.6 33.663 404 206 6 87 437 1 395 1.29e-77 248
Msa0316260 AT3G62750.5 33.663 404 206 6 87 437 1 395 1.29e-77 248
Msa0316260 AT5G54570.2 51.802 222 103 3 87 306 1 220 8.26e-76 244
Msa0316260 AT5G54570.2 43.443 122 67 2 311 430 287 408 1.97e-27 114
Msa0316260 AT2G44470.2 44.138 290 145 5 34 306 29 318 3.14e-75 241
Msa0316260 AT3G60140.2 42.020 307 159 6 17 306 11 315 3.68e-75 243
Msa0316260 AT2G44470.1 44.138 290 145 5 34 306 29 318 1.13e-74 241
Msa0316260 AT5G24550.1 44.138 290 145 5 34 306 32 321 4.92e-74 242
Msa0316260 AT5G24550.1 46.400 125 63 3 308 430 387 509 1.25e-28 118
Msa0316260 AT3G60140.1 42.020 307 159 6 17 306 11 315 9.25e-74 242
Msa0316260 AT3G60140.1 41.791 134 74 3 301 432 373 504 2.28e-29 121
Msa0316260 AT2G32860.2 43.836 292 146 4 27 300 87 378 2.29e-73 242
Msa0316260 AT2G32860.2 33.103 145 94 3 304 445 443 587 4.80e-20 93.2
Msa0316260 AT2G44470.3 44.138 290 145 5 34 306 29 318 4.65e-73 241
Msa0316260 AT2G44470.3 41.322 121 69 2 313 431 386 506 1.22e-24 107
Msa0316260 AT2G32860.1 44.027 293 145 5 27 300 87 379 1.06e-72 240
Msa0316260 AT2G32860.1 33.103 145 94 3 304 445 442 586 9.69e-20 92.4
Msa0316260 AT1G75940.1 32.454 493 239 13 29 432 32 519 6.20e-72 236
Msa0316260 AT3G09260.1 42.808 292 149 6 32 306 33 323 2.00e-71 234
Msa0316260 AT3G09260.1 37.500 152 89 4 284 432 364 512 7.71e-19 89.4
Msa0316260 AT5G24540.2 44.138 290 145 4 34 306 32 321 7.43e-71 231
Msa0316260 AT2G44490.1 42.712 295 148 6 31 306 11 303 1.95e-70 233
Msa0316260 AT2G44490.1 42.276 123 67 4 312 430 370 492 7.87e-24 104
Msa0316260 AT2G44450.2 38.068 352 161 7 141 435 3 354 2.78e-70 227
Msa0316260 AT3G03640.1 31.335 517 267 14 1 432 1 514 4.34e-70 231
Msa0316260 AT5G24540.1 44.138 290 145 4 34 306 32 321 5.56e-70 231
Msa0316260 AT5G24540.1 48.800 125 60 3 308 430 387 509 4.49e-30 122
Msa0316260 AT1G66280.1 40.439 319 164 7 11 306 8 323 5.62e-69 228
Msa0316260 AT1G66280.1 36.025 161 97 4 275 432 355 512 1.56e-19 91.7
Msa0316260 AT3G60120.1 42.034 295 153 6 29 306 9 302 5.49e-68 226
Msa0316260 AT3G60120.1 36.424 151 92 3 283 431 342 490 7.46e-22 98.6
Msa0316260 AT4G27830.2 43.891 221 122 2 87 306 1 220 9.05e-68 222
Msa0316260 AT4G27830.2 38.710 124 66 3 317 437 287 403 1.84e-22 99.4
Msa0316260 AT1G60270.2 44.545 220 121 1 87 306 1 219 1.19e-67 218
Msa0316260 AT1G66270.1 41.297 293 151 6 32 306 34 323 1.86e-67 224
Msa0316260 AT1G66270.1 35.404 161 98 4 275 432 355 512 5.38e-18 86.7
Msa0316260 AT5G48375.1 32.821 390 151 6 66 396 74 411 3.04e-66 219
Msa0316260 AT1G66270.2 40.956 293 150 8 32 306 34 321 5.14e-64 215
Msa0316260 AT1G66270.2 35.404 161 98 4 275 432 353 510 5.50e-18 86.7
Msa0316260 AT3G21370.1 39.456 294 155 7 33 306 32 322 7.15e-64 215
Msa0316260 AT3G21370.1 39.167 120 70 3 315 431 393 512 1.83e-17 85.1
Msa0316260 AT4G27820.2 45.249 221 119 2 87 306 1 220 2.70e-63 211
Msa0316260 AT4G27820.2 40.323 124 64 3 317 437 288 404 1.03e-23 103
Msa0316260 AT4G27820.3 45.249 221 119 2 87 306 1 220 2.70e-63 211
Msa0316260 AT4G27820.3 40.323 124 64 3 317 437 288 404 1.03e-23 103
Msa0316260 AT1G52400.2 35.976 328 181 7 5 306 4 328 1.36e-61 207
Msa0316260 AT1G52400.3 35.976 328 181 7 5 306 4 328 4.48e-61 207
Msa0316260 AT1G52400.3 34.848 132 77 4 315 440 397 525 3.70e-15 78.2
Msa0316260 AT1G52400.1 35.976 328 181 7 5 306 4 328 4.48e-61 207
Msa0316260 AT1G52400.1 34.848 132 77 4 315 440 397 525 3.70e-15 78.2
Msa0316260 AT1G51490.1 42.188 256 126 7 41 280 27 276 5.04e-61 204
Msa0316260 AT3G18070.2 33.131 329 151 6 170 434 100 423 6.06e-51 178
Msa0316260 AT2G44460.2 35.278 360 167 12 137 431 1 359 2.32e-50 177
Msa0316260 AT3G18070.7 31.962 316 146 6 183 434 1 311 3.75e-45 159
Msa0316260 AT2G44480.5 32.226 301 143 6 192 431 3 303 6.69e-45 159
Msa0316260 AT3G18070.5 47.445 137 72 0 170 306 100 236 2.63e-42 153
Msa0316260 AT5G16580.1 32.740 281 125 5 164 388 27 299 4.83e-37 137
Msa0316260 AT3G18070.6 45.968 124 67 0 183 306 1 124 1.68e-36 134
Msa0316260 AT3G06510.1 25.737 373 241 11 81 434 158 513 9.39e-23 101
Msa0316260 AT3G06510.2 34.959 123 66 4 315 434 436 547 7.16e-11 64.7

Find 89 sgRNAs with CRISPR-Local

Find 430 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATACTTTCCTAGTATAAT+TGG 0.115125 2_4:+13174061 None:intergenic
CCAATGTTCATTACAGAAAA+TGG 0.168940 2_4:-13173403 Msa0316260:intron
CACCAAGAGGATCAGCATTT+TGG 0.235805 2_4:-13172621 Msa0316260:CDS
AACTGCATCTTCTTCCTATC+AGG 0.258028 2_4:-13179809 Msa0316260:intron
TTGGAGACAGAGTGAAATAT+TGG 0.303333 2_4:-13174691 Msa0316260:CDS
TTTCCACGTAACTTCCTCTT+TGG 0.316373 2_4:-13179832 Msa0316260:CDS
ATTTGTCTTGCATAGGATTT+GGG 0.318772 2_4:-13173297 Msa0316260:intron
TCTTCCGAAGAGTTGCTAAA+TGG 0.324852 2_4:+13174240 None:intergenic
ATCTGGCAGGCATTAGGTTT+GGG 0.332259 2_4:-13172570 Msa0316260:CDS
CATTTCAGAGCACAAGAATC+TGG 0.338344 2_4:-13172587 Msa0316260:CDS
TGATCATTACCATCGTTATC+AGG 0.340488 2_4:-13178418 Msa0316260:intron
TCTCGTTGCTCAGGCTCATT+TGG 0.344817 2_4:-13174605 Msa0316260:CDS
ATACGTACTTGGTAGAATTC+TGG 0.361622 2_4:+13175225 None:intergenic
AAGAGGAAGTTACGTGGAAA+TGG 0.384782 2_4:+13179835 None:intergenic
CCCGTTAGTTCCATCCAATA+TGG 0.385550 2_4:+13178452 None:intergenic
TGACTCCAGTATGTTCCATT+AGG 0.387340 2_4:+13175275 None:intergenic
CCAAATGTTGCAGTTATTTG+TGG 0.390461 2_4:-13174653 Msa0316260:CDS
GTTGCTTTCAGGAACCATAT+TGG 0.391739 2_4:-13178466 Msa0316260:intron
ATTCTCTAGCAACAACAATA+AGG 0.394186 2_4:-13173195 Msa0316260:intron
ATTGTTTATTTGCAGTTTGA+AGG 0.395228 2_4:-13179376 Msa0316260:intron
ACAAGAATCTGGCAGGCATT+AGG 0.395971 2_4:-13172576 Msa0316260:CDS
AATCTGGCAGGCATTAGGTT+TGG 0.396239 2_4:-13172571 Msa0316260:CDS
GATATATGCTTCAAGTACTT+TGG 0.396921 2_4:-13174710 Msa0316260:CDS
TAATGTCATCTTATCACATC+TGG 0.406283 2_4:-13174534 Msa0316260:CDS
CCACAAATAACTGCAACATT+TGG 0.409220 2_4:+13174653 None:intergenic
GGAATCATGGATACAGTATA+AGG 0.411116 2_4:-13172684 Msa0316260:CDS
GATACTTTCCTAGTATAATT+GGG 0.417871 2_4:+13174062 None:intergenic
AGTATTTCATGCATTTCTGC+TGG 0.419581 2_4:+13174040 None:intergenic
ACAGGAAGATGTGGACCTAA+TGG 0.421446 2_4:-13175290 Msa0316260:intron
GTTATTTGTGGATATAGAAC+AGG 0.428943 2_4:-13174641 Msa0316260:CDS
CCTTGTAGACTGCGCTTGCT+TGG 0.429862 2_4:-13173492 Msa0316260:intron
TCATTTGGCAATTGCAGCTA+TGG 0.432267 2_4:-13174590 Msa0316260:CDS
GGAGTACTTGAGTAGTTACT+TGG 0.435039 2_4:-13173218 Msa0316260:CDS
ATTGACGCACTTGTCGATAA+AGG 0.436673 2_4:-13175071 Msa0316260:intron
TAATGTGTTATTGTGACAAA+AGG 0.441135 2_4:+13174888 None:intergenic
AAATATAGTGACTTACATAA+AGG 0.443814 2_4:-13173443 Msa0316260:CDS
CATGGATACAGTATAAGGTT+TGG 0.447543 2_4:-13172679 Msa0316260:CDS
AGAGGAAGTTACGTGGAAAT+GGG 0.450672 2_4:+13179836 None:intergenic
ATGTGATAAGATGACATTAG+AGG 0.452065 2_4:+13174538 None:intergenic
CCATATTGGATGGAACTAAC+GGG 0.453697 2_4:-13178452 Msa0316260:CDS
GAATTGCTATGAATGCTATA+TGG 0.459117 2_4:-13174269 Msa0316260:CDS
TCCAATACTCACCTGGTACT+TGG 0.470748 2_4:+13174490 None:intergenic
TGGAGACAGAGTGAAATATT+GGG 0.471417 2_4:-13174690 Msa0316260:CDS
ATCGTTCAATTCATCTTCAC+TGG 0.479140 2_4:+13173252 None:intergenic
GACAATGCATAATATATGTA+AGG 0.479384 2_4:+13172346 None:intergenic
TTGGAAAATACTAGGAGCTC+AGG 0.481874 2_4:+13174013 None:intergenic
TTTGGAAAGGTGAACAAAGC+TGG 0.496099 2_4:-13175116 Msa0316260:CDS
TTATGTTCACCCACAAGGAA+TGG 0.496416 2_4:-13173467 Msa0316260:CDS
TTCAATTCATCTTCACTGGT+GGG 0.503323 2_4:+13173256 None:intergenic
TATCCACCATCTCGTTGCTC+AGG 0.504336 2_4:-13174614 Msa0316260:CDS
AGGGCATGAAGGAGTTGGAA+TGG 0.505987 2_4:+13179937 None:intergenic
TTGAGGAGAGATATAAAAGT+TGG 0.507358 2_4:-13174848 Msa0316260:CDS
TGAACCATTTAGCAACTCTT+CGG 0.507825 2_4:-13174244 Msa0316260:CDS
CAAAGAGGGCATGAAGGAGT+TGG 0.507930 2_4:+13179932 None:intergenic
CTTTCAGGAACCATATTGGA+TGG 0.516070 2_4:-13178462 Msa0316260:intron
TACCAAAATGCTGATCCTCT+TGG 0.518101 2_4:+13172619 None:intergenic
GTTCAATTCATCTTCACTGG+TGG 0.520195 2_4:+13173255 None:intergenic
TATCTCTCCTCAAGTTCTTG+AGG 0.523081 2_4:+13174858 None:intergenic
GCAGAAATGCATGAAATACT+AGG 0.525815 2_4:-13174037 Msa0316260:CDS
CATTTGGCAATTGCAGCTAT+GGG 0.530031 2_4:-13174589 Msa0316260:CDS
AGAAAAGGAGCAGATGTGAG+AGG 0.530462 2_4:-13172742 Msa0316260:CDS
GAGAAAGCTTAGTGCAAAGA+GGG 0.533764 2_4:+13179918 None:intergenic
GAAGGAGCATTCTTGAGTGA+TGG 0.534274 2_4:-13179358 Msa0316260:intron
GTGGACCTAATGGAACATAC+TGG 0.536413 2_4:-13175280 Msa0316260:CDS
TCCAGAAGGTAGATTTGGAA+AGG 0.542405 2_4:-13175129 Msa0316260:intron
ACCATATTGGATGGAACTAA+CGG 0.556585 2_4:-13178453 Msa0316260:CDS
ACATTAGAGGCAGCAATGAA+AGG 0.558265 2_4:+13174551 None:intergenic
TCAATTCATCTTCACTGGTG+GGG 0.563928 2_4:+13173257 None:intergenic
TCAGAGCACAAGAATCTGGC+AGG 0.565482 2_4:-13172583 Msa0316260:CDS
TCTTGGTGTTCTATTGAGAG+TGG 0.567832 2_4:+13172636 None:intergenic
TGACATTCCTCAAGAACTTG+AGG 0.569968 2_4:-13174865 Msa0316260:CDS
TCACTCAAACACGCATAACA+TGG 0.580289 2_4:-13179965 None:intergenic
GAGCCTGAGCAACGAGATGG+TGG 0.583937 2_4:+13174611 None:intergenic
GAAAAGGAGCAGATGTGAGA+GGG 0.584177 2_4:-13172741 Msa0316260:CDS
TTAGTGCAAAGAGGGCATGA+AGG 0.598152 2_4:+13179926 None:intergenic
ATGTGAGAGGGTACTTTGTG+TGG 0.605684 2_4:-13172729 Msa0316260:CDS
ATTGAACGATGTCAAAAGAG+TGG 0.608062 2_4:-13173239 Msa0316260:CDS
AATGAGCCTGAGCAACGAGA+TGG 0.618882 2_4:+13174608 None:intergenic
AAGAAGATGCAGTTCCAAAG+AGG 0.619485 2_4:+13179818 None:intergenic
CATAATATATGTAAGGTCTG+AGG 0.625791 2_4:+13172353 None:intergenic
AGAGAAAGCTTAGTGCAAAG+AGG 0.627924 2_4:+13179917 None:intergenic
TAGTGACTTACATAAAGGAA+AGG 0.636074 2_4:-13173438 Msa0316260:CDS
TGTGTACAGAACCAAGTACC+AGG 0.639426 2_4:-13174501 Msa0316260:intron
GAGGAAGTTACGTGGAAATG+GGG 0.643854 2_4:+13179837 None:intergenic
AAGGTTTGGACTTCATCATG+TGG 0.652976 2_4:-13172665 Msa0316260:CDS
CATATTGGATGGAACTAACG+GGG 0.669236 2_4:-13178451 Msa0316260:CDS
ACTCTCAATAGAACACCAAG+AGG 0.680197 2_4:-13172634 Msa0316260:CDS
ATTAGACAACCTGATAACGA+TGG 0.696355 2_4:+13178409 None:intergenic
GTTCCAAAGAGGAAGTTACG+TGG 0.701948 2_4:+13179829 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAATAATATATAAAA+TGG + chr2_4:13177979-13177998 None:intergenic 0.0%
!! AATTATAAAAAAGATATCAA+TGG + chr2_4:13172761-13172780 None:intergenic 10.0%
!!! TTAAAATTGAATGATTTTAT+TGG - chr2_4:13172779-13172798 Msa0316260:intron 10.0%
!!! TATAGAGTTAAATAAATTTT+TGG - chr2_4:13173088-13173107 Msa0316260:intron 10.0%
!!! ACATTTTACTTTTTTTTATA+AGG + chr2_4:13173146-13173165 None:intergenic 10.0%
!!! TAAAAAAAAGTAAAATGTTT+TGG - chr2_4:13173148-13173167 Msa0316260:intron 10.0%
!! AGATAAAAGTAATAAAAATT+TGG + chr2_4:13173316-13173335 None:intergenic 10.0%
!! AAATATTTATCTGTAAAATT+AGG - chr2_4:13174477-13174496 Msa0316260:intron 10.0%
!!! AATAATATTTTTTAATGAGT+TGG - chr2_4:13175294-13175313 Msa0316260:intron 10.0%
!!! ATTCTTTTTTTTTTTATACA+AGG - chr2_4:13175440-13175459 Msa0316260:intron 10.0%
!!! AAAATTGTATATTTTCAAAT+AGG + chr2_4:13176136-13176155 None:intergenic 10.0%
!!! TTTTATTTAAATTGAAAAAC+AGG - chr2_4:13177001-13177020 Msa0316260:intron 10.0%
!! TTTAGAAAATAGTATTAAAT+CGG + chr2_4:13178742-13178761 None:intergenic 10.0%
!!! AAACAACATATTTAATTTAA+GGG + chr2_4:13178991-13179010 None:intergenic 10.0%
!!! AAAACAACATATTTAATTTA+AGG + chr2_4:13178992-13179011 None:intergenic 10.0%
!!! GAATTATTTTCTAATATTAA+GGG + chr2_4:13179368-13179387 None:intergenic 10.0%
!!! AGAATTATTTTCTAATATTA+AGG + chr2_4:13179369-13179388 None:intergenic 10.0%
!!! TGAACTTAAATTATTTTCTA+AGG + chr2_4:13172451-13172470 None:intergenic 15.0%
!!! AATTTGATCTTCTAATTTTA+TGG - chr2_4:13172589-13172608 Msa0316260:CDS 15.0%
!! AAAATTAATATTCATCAACT+AGG - chr2_4:13173026-13173045 Msa0316260:intron 15.0%
!! ACAAAATTGACTATATTTAT+AGG + chr2_4:13173116-13173135 None:intergenic 15.0%
!!! ATTTTAACACAAACTTTTAA+AGG + chr2_4:13173579-13173598 None:intergenic 15.0%
!!! TTCAAAACTTTAATTTAACA+AGG - chr2_4:13173701-13173720 Msa0316260:intron 15.0%
!! TATGTGTTGAAAATTATTAT+AGG - chr2_4:13173732-13173751 Msa0316260:intron 15.0%
!! ATGTGTTGAAAATTATTATA+GGG - chr2_4:13173733-13173752 Msa0316260:intron 15.0%
!! TAAATAAGAAAATAAGCAAT+AGG + chr2_4:13174051-13174070 None:intergenic 15.0%
!!! AATCTTTTCTTATAATGATT+GGG + chr2_4:13174113-13174132 None:intergenic 15.0%
!! TAAATAAGAAAATAAGCAAT+AGG + chr2_4:13174051-13174070 None:intergenic 15.0%
!! ATAACTATTAATTTAAAAGG+AGG + chr2_4:13174361-13174380 None:intergenic 15.0%
!! CCTATAACTATTAATTTAAA+AGG + chr2_4:13174364-13174383 None:intergenic 15.0%
!!! CCTTTTAAATTAATAGTTAT+AGG - chr2_4:13174361-13174380 Msa0316260:intron 15.0%
!!! AATATTTTAAGTTGAATAAG+TGG + chr2_4:13174453-13174472 None:intergenic 15.0%
!!! AAGAAAAAAAATGACTTTTT+AGG - chr2_4:13174532-13174551 Msa0316260:CDS 15.0%
!! TTATTGAATGAATGTAAAAA+CGG - chr2_4:13174605-13174624 Msa0316260:CDS 15.0%
!!! CTAAAAGTATTTATTATTTG+TGG + chr2_4:13174907-13174926 None:intergenic 15.0%
!!! CGATTTTCATATTTAATATA+TGG - chr2_4:13174978-13174997 Msa0316260:intron 15.0%
!!! AACAATTTTTTTTTTTTGCA+GGG + chr2_4:13175079-13175098 None:intergenic 15.0%
!!! AAACAATTTTTTTTTTTTGC+AGG + chr2_4:13175080-13175099 None:intergenic 15.0%
!!! TAAAACAATTTTTTTTTTGC+AGG - chr2_4:13175407-13175426 Msa0316260:intron 15.0%
!!! AAAACAATTTTTTTTTTGCA+GGG - chr2_4:13175408-13175427 Msa0316260:intron 15.0%
!!! TTTTCATCTTTAAATTTTCT+GGG + chr2_4:13175637-13175656 None:intergenic 15.0%
!!! ATTTTCATCTTTAAATTTTC+TGG + chr2_4:13175638-13175657 None:intergenic 15.0%
!! AGAAAATTTAAAGATGAAAA+TGG - chr2_4:13175637-13175656 Msa0316260:intron 15.0%
!!! TAAGAAAATATTCTTTTCTT+AGG - chr2_4:13175872-13175891 Msa0316260:intron 15.0%
!! TGTATATTAGTAGAAAAATA+TGG + chr2_4:13176176-13176195 None:intergenic 15.0%
!!! ATATTTTGAAAATACTTATC+GGG + chr2_4:13176237-13176256 None:intergenic 15.0%
!!! GATATTTTGAAAATACTTAT+CGG + chr2_4:13176238-13176257 None:intergenic 15.0%
!! AATATATACAATAACAATCA+AGG + chr2_4:13176692-13176711 None:intergenic 15.0%
!!! TTGATTGTTATTGTATATAT+TGG - chr2_4:13176691-13176710 Msa0316260:intron 15.0%
!! TATTAAAATAAATACGTACT+TGG + chr2_4:13177098-13177117 None:intergenic 15.0%
!!! ATTTGATGAGTTATTTTTTA+TGG - chr2_4:13178160-13178179 Msa0316260:intron 15.0%
!!! TTGTTTTTAATTTTGTATTG+TGG - chr2_4:13178764-13178783 Msa0316260:intron 15.0%
!!! TGTTTTTAATTTTGTATTGT+GGG - chr2_4:13178765-13178784 Msa0316260:intron 15.0%
!! CAACATATTTAAATAAACTA+AGG + chr2_4:13178946-13178965 None:intergenic 15.0%
!! AGAATTTCATCTTATAAATA+AGG + chr2_4:13179268-13179287 None:intergenic 15.0%
!!! TTTTTAGTTAATTAATCTAG+TGG + chr2_4:13179293-13179312 None:intergenic 15.0%
!! ATTAACTAAAAATAGAAAAG+AGG - chr2_4:13179301-13179320 Msa0316260:intron 15.0%
!! TAACAACATAAAGTTAAAAA+TGG + chr2_4:13179433-13179452 None:intergenic 15.0%
!!! ATTTTTAACTTTATGTTGTT+AGG - chr2_4:13179432-13179451 Msa0316260:intron 15.0%
!!! AAATTGAATGATTTTATTGG+TGG - chr2_4:13172782-13172801 Msa0316260:intron 20.0%
!! AACAATTATATATTCTAGTG+AGG + chr2_4:13172896-13172915 None:intergenic 20.0%
!! ATTTAACTCTATATATAGAG+AGG + chr2_4:13173081-13173100 None:intergenic 20.0%
!!! TATTCTAGAGTTAAATAAGT+TGG + chr2_4:13173797-13173816 None:intergenic 20.0%
!!! AATCTTTTCTTACAATGATT+GGG + chr2_4:13173944-13173963 None:intergenic 20.0%
!! TAAGCAATAGGTATAATATA+TGG + chr2_4:13174039-13174058 None:intergenic 20.0%
!!! ATCTTTTCTTATAATGATTG+GGG + chr2_4:13174112-13174131 None:intergenic 20.0%
!!! GAATCTTTTCTTATAATGAT+TGG + chr2_4:13174114-13174133 None:intergenic 20.0%
!! ATTATAAGAAAAGATTCAGA+TGG - chr2_4:13174117-13174136 Msa0316260:intron 20.0%
!! AGAAGAGAAAAAAAAAACAA+TGG + chr2_4:13174163-13174182 None:intergenic 20.0%
!! TAAGCAATAGGTATAATATA+TGG + chr2_4:13174039-13174058 None:intergenic 20.0%
!!! AATTATAAAAGGTGTGAAAA+AGG + chr2_4:13174282-13174301 None:intergenic 20.0%
!! CAATTAAGAAAGAGAAAAAA+GGG - chr2_4:13174321-13174340 Msa0316260:intron 20.0%
!!! TTTTTTCTTATAATAGTGAC+CGG + chr2_4:13174521-13174540 None:intergenic 20.0%
!! TTGGATAAAAAAATGACTTA+AGG - chr2_4:13174764-13174783 Msa0316260:intron 20.0%
!! TGGATAAAAAAATGACTTAA+GGG - chr2_4:13174765-13174784 Msa0316260:intron 20.0%
!! TTATAATCATCTAACGTTAA+TGG - chr2_4:13174826-13174845 Msa0316260:intron 20.0%
!! TATAATCATCTAACGTTAAT+GGG - chr2_4:13174827-13174846 Msa0316260:intron 20.0%
!! AATCTTTAACATATGCATTT+AGG + chr2_4:13174884-13174903 None:intergenic 20.0%
!!! AAACAATTTTTTTTTTGCAG+GGG - chr2_4:13175409-13175428 Msa0316260:intron 20.0%
!! AATTTAAAGATGAAAATGGA+CGG - chr2_4:13175641-13175660 Msa0316260:intron 20.0%
!!! TAAACAAAAAGTAGCTTTTT+AGG + chr2_4:13175788-13175807 None:intergenic 20.0%
!!! TTTTTGTTTATAAATGTGAC+CGG - chr2_4:13175798-13175817 Msa0316260:intron 20.0%
!!! TATTTTCTTATATTTGAGAC+CGG + chr2_4:13175862-13175881 None:intergenic 20.0%
!!! TAAGAAAAGATTCTCTTTTT+AGG + chr2_4:13175961-13175980 None:intergenic 20.0%
!! TTAAGTTCAAAATTATGCAT+TGG - chr2_4:13176297-13176316 Msa0316260:intron 20.0%
!!! TTATCGATTTTCATTATCAT+GGG - chr2_4:13177061-13177080 Msa0316260:intron 20.0%
!!! TTACGTACATTTATATTTTC+AGG - chr2_4:13177555-13177574 Msa0316260:intron 20.0%
!!! TACGTACATTTATATTTTCA+GGG - chr2_4:13177556-13177575 Msa0316260:intron 20.0%
!!! AAGCTTAGCTATAAAATTTT+GGG + chr2_4:13178189-13178208 None:intergenic 20.0%
!! TATCATATTTGGAAAATACT+AGG + chr2_4:13178307-13178326 None:intergenic 20.0%
!!! GAATTTTTCTGTATCATATT+TGG + chr2_4:13178318-13178337 None:intergenic 20.0%
!! AAAGCTATGAAATATAATAC+CGG + chr2_4:13178494-13178513 None:intergenic 20.0%
!! TAGTCTCATTAATTCAATAT+CGG + chr2_4:13178545-13178564 None:intergenic 20.0%
!! AAATATAGTGACTTACATAA+AGG - chr2_4:13178866-13178885 Msa0316260:intron 20.0%
!!! AGTAATGGATAAAAATAAGA+TGG + chr2_4:13179153-13179172 None:intergenic 20.0%
!! TTATCCATTACTAAAAAAAG+AGG - chr2_4:13179161-13179180 Msa0316260:intron 20.0%
!! AACATAAAGTTAAAAATGGA+AGG + chr2_4:13179429-13179448 None:intergenic 20.0%
!!! CTTTTATCAAACACATATAT+TGG + chr2_4:13179830-13179849 None:intergenic 20.0%
!! TTTCTCTTCTCAATTTTCAT+GGG - chr2_4:13172408-13172427 Msa0316260:three_prime_UTR 25.0%
!! AATCTCTCTTTTATCTAAGT+TGG - chr2_4:13172656-13172675 Msa0316260:CDS 25.0%
!!! TCTTTTATCTAAGTTGGAAT+AGG - chr2_4:13172662-13172681 Msa0316260:CDS 25.0%
!! TTGTTTAAGATATGCTTAGT+TGG - chr2_4:13172697-13172716 Msa0316260:CDS 25.0%
!! TGTTTAAGATATGCTTAGTT+GGG - chr2_4:13172698-13172717 Msa0316260:CDS 25.0%
!!! ATGGTTCTAGAAATTTGATT+AGG - chr2_4:13172731-13172750 Msa0316260:CDS 25.0%
! CAAACTGCAAATAAACAATT+AGG + chr2_4:13172932-13172951 None:intergenic 25.0%
! ATTGTTTATTTGCAGTTTGA+AGG - chr2_4:13172933-13172952 Msa0316260:intron 25.0%
!! GTATAAGGAACATTTTCAAT+CGG + chr2_4:13173056-13173075 None:intergenic 25.0%
!! ATATATAGAGAGGAAGTATA+AGG + chr2_4:13173071-13173090 None:intergenic 25.0%
!!! ATATTGAGCTCGTTTTTTTA+TGG + chr2_4:13173290-13173309 None:intergenic 25.0%
!! ATCTTTTCTTACAATGATTG+GGG + chr2_4:13173943-13173962 None:intergenic 25.0%
!! GAATCTTTTCTTACAATGAT+TGG + chr2_4:13173945-13173964 None:intergenic 25.0%
! ATTGTAAGAAAAGATTCAGA+TGG - chr2_4:13173948-13173967 Msa0316260:intron 25.0%
! GAAGAGGAAAAAAAAAACAA+TGG + chr2_4:13173994-13174013 None:intergenic 25.0%
! TTATTAGTGTCAAAAAGAAG+AGG + chr2_4:13174010-13174029 None:intergenic 25.0%
!! TTTCTTATTTGTGTCTAAGT+TGG - chr2_4:13174084-13174103 Msa0316260:intron 25.0%
! AGAGAAAAAAAAAACAATGG+TGG + chr2_4:13174160-13174179 None:intergenic 25.0%
!!! CCTTTTTTCTCTTTCTTAAT+TGG + chr2_4:13174323-13174342 None:intergenic 25.0%
! CCAATTAAGAAAGAGAAAAA+AGG - chr2_4:13174320-13174339 Msa0316260:intron 25.0%
! CATTCAATAAATGATGTATG+TGG - chr2_4:13174557-13174576 Msa0316260:CDS 25.0%
! CATTCAATAAATGATGTATG+TGG + chr2_4:13174557-13174576 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG - chr2_4:13174630-13174649 Msa0316260:CDS 25.0%
! CAATAAGAAGATAACATGTT+AGG - chr2_4:13174663-13174682 Msa0316260:CDS 25.0%
!! GTAAACACTTTTAACAAAGT+TGG - chr2_4:13174745-13174764 Msa0316260:intron 25.0%
! ATGTATACAGTCACATTTAT+AGG - chr2_4:13175737-13175756 Msa0316260:intron 25.0%
!!! TCTTTTCTTATATTTGAGAC+CGG - chr2_4:13175971-13175990 Msa0316260:intron 25.0%
! TTCAAATAGGTTATCTATAG+CGG + chr2_4:13176123-13176142 None:intergenic 25.0%
! AAATATGGTCAAAGTAAGTT+AGG + chr2_4:13176161-13176180 None:intergenic 25.0%
! GGAGTAACTTAATATATTAG+TGG - chr2_4:13176363-13176382 Msa0316260:intron 25.0%
! ATTCATATGGTGATAATTAC+AGG + chr2_4:13176485-13176504 None:intergenic 25.0%
! GTGAAAGTAACATATTCATA+TGG + chr2_4:13176498-13176517 None:intergenic 25.0%
! AATTGTACTTCTCTCTAATA+GGG + chr2_4:13176575-13176594 None:intergenic 25.0%
! TAATTGTACTTCTCTCTAAT+AGG + chr2_4:13176576-13176595 None:intergenic 25.0%
! ATCTTTAATCAAGTGAGATT+TGG + chr2_4:13176723-13176742 None:intergenic 25.0%
!!! GTTATCGATTTTCATTATCA+TGG - chr2_4:13177060-13177079 Msa0316260:intron 25.0%
! TGATTCATATTAAATACGCT+CGG - chr2_4:13177287-13177306 Msa0316260:intron 25.0%
!! TCAATTACAAGTTGAAAGAA+TGG + chr2_4:13177387-13177406 None:intergenic 25.0%
!! TTCAACTTGTAATTGATTTC+AGG - chr2_4:13177391-13177410 Msa0316260:intron 25.0%
!! TAATGTGTTATTGTGACAAA+AGG + chr2_4:13177424-13177443 None:intergenic 25.0%
!! ATTCTCAATTTGTGTTGATA+GGG + chr2_4:13177519-13177538 None:intergenic 25.0%
!!! ATATTTTCAGGGAAGATTTT+AGG - chr2_4:13177567-13177586 Msa0316260:intron 25.0%
!!! ATTTTAAAAGCCTAAATCGA+GGG + chr2_4:13177895-13177914 None:intergenic 25.0%
!!! AATTTTAAAAGCCTAAATCG+AGG + chr2_4:13177896-13177915 None:intergenic 25.0%
!!! TCGATTTAGGCTTTTAAAAT+TGG - chr2_4:13177895-13177914 Msa0316260:intron 25.0%
!!! CGATTTAGGCTTTTAAAATT+GGG - chr2_4:13177896-13177915 Msa0316260:intron 25.0%
! CACAAATATCAGAAAAATCA+GGG - chr2_4:13178006-13178025 Msa0316260:intron 25.0%
!! CTCAATCATTTTACATGAAT+TGG - chr2_4:13178112-13178131 Msa0316260:intron 25.0%
!! CAAGCTTAGCTATAAAATTT+TGG + chr2_4:13178190-13178209 None:intergenic 25.0%
! GATACTTTCCTAGTATAATT+GGG + chr2_4:13178250-13178269 None:intergenic 25.0%
! GATACAGAAAAATTCAAGAA+TGG - chr2_4:13178323-13178342 Msa0316260:intron 25.0%
!!! AAGAATGGATTAGATTTCAT+TGG - chr2_4:13178338-13178357 Msa0316260:intron 25.0%
! AGTCTCATTAATTCAATATC+GGG + chr2_4:13178544-13178563 None:intergenic 25.0%
! TTAATGAGACTATCAAATCA+TGG - chr2_4:13178553-13178572 Msa0316260:intron 25.0%
!! GTGGGTTACATATAATTATA+AGG - chr2_4:13178783-13178802 Msa0316260:intron 25.0%
!!! TTGTTTTATTTGTCTTGCAT+AGG - chr2_4:13179005-13179024 Msa0316260:intron 25.0%
!!! ACAACCTCTTTTTTTAGTAA+TGG + chr2_4:13179168-13179187 None:intergenic 25.0%
! ACATTACAATATGTAGTGTT+GGG - chr2_4:13179215-13179234 Msa0316260:intron 25.0%
! TTTGCTAAGAAATCTAAGTT+GGG + chr2_4:13179480-13179499 None:intergenic 25.0%
! TCAAAGAAGAAAAAAGTCTT+TGG - chr2_4:13179802-13179821 Msa0316260:intron 25.0%
!!! GTGTTTTAGTATGTCTTTTT+TGG - chr2_4:13179915-13179934 Msa0316260:CDS 25.0%
!!! TTTTAGTATGTCTTTTTTGG+TGG - chr2_4:13179918-13179937 Msa0316260:CDS 25.0%
! CTTTCTCTTCTCAATTTTCA+TGG - chr2_4:13172407-13172426 Msa0316260:three_prime_UTR 30.0%
CTAGCTAAAAATAACCTGAT+AGG + chr2_4:13172517-13172536 None:intergenic 30.0%
ACGTGCTAAAAATTTCTGTA+GGG + chr2_4:13173175-13173194 None:intergenic 30.0%
TACGTGCTAAAAATTTCTGT+AGG + chr2_4:13173176-13173195 None:intergenic 30.0%
AAAAAAAAAGTGACAGGCTT+TGG + chr2_4:13173760-13173779 None:intergenic 30.0%
TCTCACAAAAAAAAAGTGAC+AGG + chr2_4:13173766-13173785 None:intergenic 30.0%
! TGTCTAATTTGTGTCTAAGT+TGG - chr2_4:13173915-13173934 Msa0316260:intron 30.0%
GAGGAAAAAAAAAACAATGG+TGG + chr2_4:13173991-13174010 None:intergenic 30.0%
ACATTACTATATGCATAGTC+CGG - chr2_4:13174408-13174427 Msa0316260:intron 30.0%
! TTCTTATTGATTATTCCCTC+CGG + chr2_4:13174652-13174671 None:intergenic 30.0%
ACATGTTAGGTAATCTTGTT+TGG - chr2_4:13174676-13174695 Msa0316260:CDS 30.0%
!!! TTTGGTGTCATAAACACTTT+TGG - chr2_4:13174694-13174713 Msa0316260:CDS 30.0%
TGTCAGATCATAATTGAAGT+GGG + chr2_4:13175370-13175389 None:intergenic 30.0%
ATGTCAGATCATAATTGAAG+TGG + chr2_4:13175369-13175388 None:intergenic 30.0%
ACTTCAATTATGATCTGACA+TGG - chr2_4:13175119-13175138 Msa0316260:CDS 30.0%
! ATTATGATCTGACATGGTTT+TGG - chr2_4:13175125-13175144 Msa0316260:CDS 30.0%
ACTTCAATTATGATCTGACA+TGG + chr2_4:13175119-13175138 None:intergenic 30.0%
ATGTCAGATCATAATTGAAG+TGG - chr2_4:13175369-13175388 Msa0316260:intron 30.0%
TGTCAGATCATAATTGAAGT+GGG - chr2_4:13175370-13175389 Msa0316260:intron 30.0%
TGCAATTCGTTTCTGTAATT+TGG + chr2_4:13175484-13175503 None:intergenic 30.0%
TTACTTATAAATGTGACCAG+AGG + chr2_4:13175685-13175704 None:intergenic 30.0%
TGTAATTATCACCATATGTC+CGG - chr2_4:13175840-13175859 Msa0316260:intron 30.0%
CATTGAGTAGTTAATGTATC+TGG - chr2_4:13175897-13175916 Msa0316260:intron 30.0%
TCAAATAGGTTATCTATAGC+GGG + chr2_4:13176122-13176141 None:intergenic 30.0%
!!! AACGGAAAAAGGCTTTTTTA+AGG - chr2_4:13176428-13176447 Msa0316260:intron 30.0%
!!! ACGGAAAAAGGCTTTTTTAA+GGG - chr2_4:13176429-13176448 Msa0316260:intron 30.0%
ATATGGTGATAATTACAGGA+GGG + chr2_4:13175837-13175856 None:intergenic 30.0%
TCATTTGCAATGATAGATGT+GGG + chr2_4:13176532-13176551 None:intergenic 30.0%
ATCATTTGCAATGATAGATG+TGG + chr2_4:13176533-13176552 None:intergenic 30.0%
AATTGAAAAACAGGAAGATG+TGG - chr2_4:13177010-13177029 Msa0316260:intron 30.0%
!!! TCCTTTGAAATTTTTCCAGA+AGG - chr2_4:13177166-13177185 Msa0316260:intron 30.0%
! ACCTTCTGGAAAAATTTCAA+AGG + chr2_4:13177170-13177189 None:intergenic 30.0%
! ATTTTTCCAGAAGGTAGATT+TGG - chr2_4:13177175-13177194 Msa0316260:intron 30.0%
TTGAGGAGAGATATAAAAGT+TGG - chr2_4:13177461-13177480 Msa0316260:intron 30.0%
! GATTCTCAATTTGTGTTGAT+AGG + chr2_4:13177520-13177539 None:intergenic 30.0%
GATATATGCTTCAAGTACTT+TGG - chr2_4:13177599-13177618 Msa0316260:intron 30.0%
GTTATTTGTGGATATAGAAC+AGG - chr2_4:13177668-13177687 Msa0316260:intron 30.0%
ATGTGATAAGATGACATTAG+AGG + chr2_4:13177774-13177793 None:intergenic 30.0%
TAATGTCATCTTATCACATC+TGG - chr2_4:13177775-13177794 Msa0316260:intron 30.0%
GCACAAATATCAGAAAAATC+AGG - chr2_4:13178005-13178024 Msa0316260:intron 30.0%
AAATATCAGAAAAATCAGGG+AGG - chr2_4:13178009-13178028 Msa0316260:intron 30.0%
AAAAATCAGGGAGGAAATAT+TGG - chr2_4:13178018-13178037 Msa0316260:intron 30.0%
GAATTGCTATGAATGCTATA+TGG - chr2_4:13178040-13178059 Msa0316260:intron 30.0%
! TTTTTGGACCCAATTATACT+AGG - chr2_4:13178239-13178258 Msa0316260:intron 30.0%
GGATACTTTCCTAGTATAAT+TGG + chr2_4:13178251-13178270 None:intergenic 30.0%
CATTTGAACTTGAAATTGAC+CGG + chr2_4:13178709-13178728 None:intergenic 30.0%
GAAAATAGTATTAAATCGGC+CGG + chr2_4:13178738-13178757 None:intergenic 30.0%
! CTATATTTTCCATTCCTTGT+GGG + chr2_4:13178854-13178873 None:intergenic 30.0%
! ACTATATTTTCCATTCCTTG+TGG + chr2_4:13178855-13178874 None:intergenic 30.0%
TAGTGACTTACATAAAGGAA+AGG - chr2_4:13178871-13178890 Msa0316260:intron 30.0%
! CCATTTTCTGTAATGAACAT+TGG + chr2_4:13178909-13178928 None:intergenic 30.0%
CCAATGTTCATTACAGAAAA+TGG - chr2_4:13178906-13178925 Msa0316260:intron 30.0%
TATTTGTCTTGCATAGGATT+TGG - chr2_4:13179011-13179030 Msa0316260:intron 30.0%
ATTTGTCTTGCATAGGATTT+GGG - chr2_4:13179012-13179031 Msa0316260:intron 30.0%
ATTCTCTAGCAACAACAATA+AGG - chr2_4:13179114-13179133 Msa0316260:intron 30.0%
TAGCAACAACAATAAGGTAT+TGG - chr2_4:13179120-13179139 Msa0316260:intron 30.0%
GACATTACAATATGTAGTGT+TGG - chr2_4:13179214-13179233 Msa0316260:intron 30.0%
CATTACAATATGTAGTGTTG+GGG - chr2_4:13179216-13179235 Msa0316260:intron 30.0%
GTTAAAAATGGAAGGCAATT+TGG + chr2_4:13179421-13179440 None:intergenic 30.0%
CTTTGCTAAGAAATCTAAGT+TGG + chr2_4:13179481-13179500 None:intergenic 30.0%
!!! GTTACTTTTGTGTACAGAAA+AGG - chr2_4:13179552-13179571 Msa0316260:intron 30.0%
CATAATATATGTAAGGTCTG+AGG + chr2_4:13179959-13179978 None:intergenic 30.0%
! TCAATTTTCATGGGATCATG+TGG - chr2_4:13172417-13172436 Msa0316260:three_prime_UTR 35.0%
! TAGCAAACTTTTCTCATCGA+GGG - chr2_4:13172534-13172553 Msa0316260:three_prime_UTR 35.0%
ATGGTAAGGGACTAAATAAC+TGG - chr2_4:13172970-13172989 Msa0316260:intron 35.0%
TGGTAAGGGACTAAATAACT+GGG - chr2_4:13172971-13172990 Msa0316260:intron 35.0%
GATGTGTTCACTCATAAAAC+AGG - chr2_4:13172993-13173012 Msa0316260:intron 35.0%
GTTCACTCATAAAACAGGTT+TGG - chr2_4:13172998-13173017 Msa0316260:intron 35.0%
!!! TGAGCTCGTTTTTTTATGGA+GGG + chr2_4:13173286-13173305 None:intergenic 35.0%
!!! TTGAGCTCGTTTTTTTATGG+AGG + chr2_4:13173287-13173306 None:intergenic 35.0%
ACCATATTGGATGGAACTAA+CGG - chr2_4:13173856-13173875 Msa0316260:intron 35.0%
TGATCATTACCATCGTTATC+AGG - chr2_4:13173891-13173910 Msa0316260:intron 35.0%
! ATTAGACAACCTGATAACGA+TGG + chr2_4:13173903-13173922 None:intergenic 35.0%
TTCTTATAATAGTGACCGGT+GGG + chr2_4:13174517-13174536 None:intergenic 35.0%
TTTCTTATAATAGTGACCGG+TGG + chr2_4:13174518-13174537 None:intergenic 35.0%
CCATTCAACATTGAAATGAC+AGG + chr2_4:13174721-13174740 None:intergenic 35.0%
! CCTGTCATTTCAATGTTGAA+TGG - chr2_4:13174718-13174737 Msa0316260:CDS 35.0%
CAAAACTCGCTCAAATTACA+GGG + chr2_4:13175022-13175041 None:intergenic 35.0%
TCAAAACTCGCTCAAATTAC+AGG + chr2_4:13175023-13175042 None:intergenic 35.0%
GTCAGATCATAATTGAAGTG+GGG + chr2_4:13175371-13175390 None:intergenic 35.0%
! AAATTTGTTTCAATGCCACG+TGG + chr2_4:13175151-13175170 None:intergenic 35.0%
GTCAGATCATAATTGAAGTG+GGG - chr2_4:13175371-13175390 Msa0316260:intron 35.0%
TAAAAATGTTGAGTCAGTGC+CGG - chr2_4:13175586-13175605 Msa0316260:intron 35.0%
TACAGTCACATTTATAGGTC+AGG - chr2_4:13175742-13175761 Msa0316260:intron 35.0%
TTGTTTATAAATGTGACCGG+AGG - chr2_4:13175801-13175820 Msa0316260:intron 35.0%
TATGGTGATAATTACAGGAC+AGG + chr2_4:13175836-13175855 None:intergenic 35.0%
GGACATATGGTGATAATTAC+AGG + chr2_4:13175841-13175860 None:intergenic 35.0%
! TATATTTGAGACCGGACATA+TGG + chr2_4:13175854-13175873 None:intergenic 35.0%
! TTTCTTATATTTGAGACCGG+AGG - chr2_4:13175974-13175993 Msa0316260:intron 35.0%
! TTCTTATATTTGAGACCGGA+GGG - chr2_4:13175975-13175994 Msa0316260:intron 35.0%
AAAGCAAGTAGACAGATAGT+AGG - chr2_4:13176013-13176032 Msa0316260:intron 35.0%
TCAACCGTGTCAAGTATTAT+GGG - chr2_4:13176334-13176353 Msa0316260:intron 35.0%
TATGGTGATAATTACAGGAG+GGG + chr2_4:13176480-13176499 None:intergenic 35.0%
CATATGGTGATAATTACAGG+AGG + chr2_4:13175838-13175857 None:intergenic 35.0%
CATTTGCAATGATAGATGTG+GGG + chr2_4:13176531-13176550 None:intergenic 35.0%
CTCTAATAGGGAAACAAACA+AGG + chr2_4:13176563-13176582 None:intergenic 35.0%
ATACGTACTTGGTAGAATTC+TGG + chr2_4:13177087-13177106 None:intergenic 35.0%
TTGGAGACAGAGTGAAATAT+TGG - chr2_4:13177618-13177637 Msa0316260:intron 35.0%
TGGAGACAGAGTGAAATATT+GGG - chr2_4:13177619-13177638 Msa0316260:intron 35.0%
CCACAAATAACTGCAACATT+TGG + chr2_4:13177659-13177678 None:intergenic 35.0%
CCAAATGTTGCAGTTATTTG+TGG - chr2_4:13177656-13177675 Msa0316260:intron 35.0%
TGAACCATTTAGCAACTCTT+CGG - chr2_4:13178065-13178084 Msa0316260:intron 35.0%
! TATGGAGAAATGCAGGTTTT+TGG - chr2_4:13178223-13178242 Msa0316260:intron 35.0%
AGTATTTCATGCATTTCTGC+TGG + chr2_4:13178272-13178291 None:intergenic 35.0%
GCAGAAATGCATGAAATACT+AGG - chr2_4:13178272-13178291 Msa0316260:intron 35.0%
ATCTTCTCTACATGTGAACA+AGG - chr2_4:13178398-13178417 Msa0316260:intron 35.0%
TCTACATGTGAACAAGGAAA+AGG - chr2_4:13178404-13178423 Msa0316260:intron 35.0%
CTACATGTGAACAAGGAAAA+GGG - chr2_4:13178405-13178424 Msa0316260:intron 35.0%
CTAACATCTGCACAAATGAA+TGG - chr2_4:13178452-13178471 Msa0316260:CDS 35.0%
CAAATGAATGGCATGAGTAT+TGG - chr2_4:13178464-13178483 Msa0316260:intron 35.0%
GTATCTTAGTCTAGTTGAAC+TGG + chr2_4:13178661-13178680 None:intergenic 35.0%
!! CGGTCAATTTCAAGTTCAAA+TGG - chr2_4:13178707-13178726 Msa0316260:intron 35.0%
TCAAGTTCAAATGGTTGAAC+CGG - chr2_4:13178716-13178735 Msa0316260:intron 35.0%
! AAGGGCATGACATCAATAAT+GGG + chr2_4:13178973-13178992 None:intergenic 35.0%
! TAAGGGCATGACATCAATAA+TGG + chr2_4:13178974-13178993 None:intergenic 35.0%
TTCAATTCATCTTCACTGGT+GGG + chr2_4:13179056-13179075 None:intergenic 35.0%
ATCGTTCAATTCATCTTCAC+TGG + chr2_4:13179060-13179079 None:intergenic 35.0%
ATTGAACGATGTCAAAAGAG+TGG - chr2_4:13179070-13179089 Msa0316260:intron 35.0%
!! CAAAACAGTTGATGATTGTG+TGG + chr2_4:13179507-13179526 None:intergenic 35.0%
! CACACAATCATCAACTGTTT+TGG - chr2_4:13179505-13179524 Msa0316260:intron 35.0%
! CTCTTCTAGACAATTTTGAG+TGG - chr2_4:13179604-13179623 Msa0316260:intron 35.0%
!! GACAATTTTGAGTGGAATCA+TGG - chr2_4:13179612-13179631 Msa0316260:intron 35.0%
GGAATCATGGATACAGTATA+AGG - chr2_4:13179625-13179644 Msa0316260:intron 35.0%
CATGGATACAGTATAAGGTT+TGG - chr2_4:13179630-13179649 Msa0316260:intron 35.0%
!!! TAGTATGTCTTTTTTGGTGG+TGG - chr2_4:13179921-13179940 Msa0316260:CDS 35.0%
GAGAAAGCTTAGTGCAAAGA+GGG + chr2_4:13172394-13172413 None:intergenic 40.0%
AGAGAAAGCTTAGTGCAAAG+AGG + chr2_4:13172395-13172414 None:intergenic 40.0%
AGAGGAAGTTACGTGGAAAT+GGG + chr2_4:13172476-13172495 None:intergenic 40.0%
AAGAGGAAGTTACGTGGAAA+TGG + chr2_4:13172477-13172496 None:intergenic 40.0%
TTTCCACGTAACTTCCTCTT+TGG - chr2_4:13172477-13172496 Msa0316260:three_prime_UTR 40.0%
AAGAAGATGCAGTTCCAAAG+AGG + chr2_4:13172494-13172513 None:intergenic 40.0%
AACTGCATCTTCTTCCTATC+AGG - chr2_4:13172500-13172519 Msa0316260:three_prime_UTR 40.0%
! CTAGCAAACTTTTCTCATCG+AGG - chr2_4:13172533-13172552 Msa0316260:three_prime_UTR 40.0%
AGATATGCTTAGTTGGGAGT+TGG - chr2_4:13172704-13172723 Msa0316260:CDS 40.0%
!! TTAGTTGGGAGTTGGTATCA+TGG - chr2_4:13172712-13172731 Msa0316260:CDS 40.0%
AGCATTCTTGAGTGATGGTA+AGG - chr2_4:13172956-13172975 Msa0316260:intron 40.0%
GCATTCTTGAGTGATGGTAA+GGG - chr2_4:13172957-13172976 Msa0316260:intron 40.0%
! GTTGCTTTCAGGAACCATAT+TGG - chr2_4:13173843-13173862 Msa0316260:intron 40.0%
CTTTCAGGAACCATATTGGA+TGG - chr2_4:13173847-13173866 Msa0316260:intron 40.0%
CCATATTGGATGGAACTAAC+GGG - chr2_4:13173857-13173876 Msa0316260:intron 40.0%
CATATTGGATGGAACTAACG+GGG - chr2_4:13173858-13173877 Msa0316260:intron 40.0%
! TTGAATAAGTGGAGTGTCTG+CGG + chr2_4:13174442-13174461 None:intergenic 40.0%
! GTTTAAAATCGTACTCCCAC+CGG - chr2_4:13174499-13174518 Msa0316260:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr2_4:13174633-13174652 Msa0316260:CDS 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr2_4:13174634-13174653 Msa0316260:CDS 40.0%
TCATAATTGAAGTGGGGTCA+GGG + chr2_4:13175377-13175396 None:intergenic 40.0%
ATCATAATTGAAGTGGGGTC+AGG + chr2_4:13175376-13175395 None:intergenic 40.0%
AACATGTGTCGTGCATACAT+AGG + chr2_4:13175529-13175548 None:intergenic 40.0%
AAAAATGTTGAGTCAGTGCC+GGG - chr2_4:13175587-13175606 Msa0316260:intron 40.0%
! GATGAAAATGGACGGTGTTA+TGG - chr2_4:13175649-13175668 Msa0316260:intron 40.0%
TTATGGCTCAATACTTCCTC+TGG - chr2_4:13175666-13175685 Msa0316260:intron 40.0%
TAGTAGTAACATACTCCCTC+CGG + chr2_4:13175993-13176012 None:intergenic 40.0%
! ATAGGTTATCTATAGCGGGA+CGG + chr2_4:13176118-13176137 None:intergenic 40.0%
GTCAACCGTGTCAAGTATTA+TGG - chr2_4:13176333-13176352 Msa0316260:intron 40.0%
ATGGTGATAATTACAGGAGG+GGG + chr2_4:13176479-13176498 None:intergenic 40.0%
TGACTCCAGTATGTTCCATT+AGG + chr2_4:13177037-13177056 None:intergenic 40.0%
TCCAGAAGGTAGATTTGGAA+AGG - chr2_4:13177180-13177199 Msa0316260:intron 40.0%
ACCTTTCCAAATCTACCTTC+TGG + chr2_4:13177184-13177203 None:intergenic 40.0%
TTTGGAAAGGTGAACAAAGC+TGG - chr2_4:13177193-13177212 Msa0316260:intron 40.0%
ATTGACGCACTTGTCGATAA+AGG - chr2_4:13177238-13177257 Msa0316260:intron 40.0%
ATAGGACTTTGCATAGTCGT+TGG + chr2_4:13177315-13177334 None:intergenic 40.0%
TGACATTCCTCAAGAACTTG+AGG - chr2_4:13177444-13177463 Msa0316260:intron 40.0%
TATCTCTCCTCAAGTTCTTG+AGG + chr2_4:13177454-13177473 None:intergenic 40.0%
TCATTTGGCAATTGCAGCTA+TGG - chr2_4:13177719-13177738 Msa0316260:intron 40.0%
CATTTGGCAATTGCAGCTAT+GGG - chr2_4:13177720-13177739 Msa0316260:intron 40.0%
ACATTAGAGGCAGCAATGAA+AGG + chr2_4:13177761-13177780 None:intergenic 40.0%
TATTGGAGATGCGCATAATC+AGG - chr2_4:13177835-13177854 Msa0316260:intron 40.0%
ATTGGAGATGCGCATAATCA+GGG - chr2_4:13177836-13177855 Msa0316260:intron 40.0%
TCTTCCGAAGAGTTGCTAAA+TGG + chr2_4:13178072-13178091 None:intergenic 40.0%
AAACCTGCATTTCTCCATAG+TGG + chr2_4:13178222-13178241 None:intergenic 40.0%
TTGGAAAATACTAGGAGCTC+AGG + chr2_4:13178299-13178318 None:intergenic 40.0%
AAAAGGGTCTTCAAAGACAG+AGG - chr2_4:13178421-13178440 Msa0316260:CDS 40.0%
AAAGGGTCTTCAAAGACAGA+GGG - chr2_4:13178422-13178441 Msa0316260:CDS 40.0%
GAACTGGTTGAACGTATAGT+TGG + chr2_4:13178645-13178664 None:intergenic 40.0%
!!! TGGTTTTATGTTCACCCACA+AGG - chr2_4:13178837-13178856 Msa0316260:intron 40.0%
TTATGTTCACCCACAAGGAA+TGG - chr2_4:13178842-13178861 Msa0316260:intron 40.0%
TCAATTCATCTTCACTGGTG+GGG + chr2_4:13179055-13179074 None:intergenic 40.0%
GTTCAATTCATCTTCACTGG+TGG + chr2_4:13179057-13179076 None:intergenic 40.0%
! GGAGTACTTGAGTAGTTACT+TGG - chr2_4:13179091-13179110 Msa0316260:intron 40.0%
TTGTCTCGCTTTACTTCAGT+TGG - chr2_4:13179187-13179206 Msa0316260:intron 40.0%
GGGGATTAGAGTTCAAATCT+AGG - chr2_4:13179235-13179254 Msa0316260:intron 40.0%
AAGGTTTGGACTTCATCATG+TGG - chr2_4:13179644-13179663 Msa0316260:intron 40.0%
!! TCTTGGTGTTCTATTGAGAG+TGG + chr2_4:13179676-13179695 None:intergenic 40.0%
ACTCTCAATAGAACACCAAG+AGG - chr2_4:13179675-13179694 Msa0316260:intron 40.0%
TACCAAAATGCTGATCCTCT+TGG + chr2_4:13179693-13179712 None:intergenic 40.0%
CATTTCAGAGCACAAGAATC+TGG - chr2_4:13179722-13179741 Msa0316260:intron 40.0%
! TTAGTGCAAAGAGGGCATGA+AGG + chr2_4:13172386-13172405 None:intergenic 45.0%
GAGGAAGTTACGTGGAAATG+GGG + chr2_4:13172475-13172494 None:intergenic 45.0%
GTTCCAAAGAGGAAGTTACG+TGG + chr2_4:13172483-13172502 None:intergenic 45.0%
!! GAAGGAGCATTCTTGAGTGA+TGG - chr2_4:13172951-13172970 Msa0316260:intron 45.0%
! TCTCACATGCAGTTGCTTTC+AGG - chr2_4:13173832-13173851 Msa0316260:intron 45.0%
CCCGTTAGTTCCATCCAATA+TGG + chr2_4:13173860-13173879 None:intergenic 45.0%
CCGTCCCATAATACTTGACA+CGG + chr2_4:13176341-13176360 None:intergenic 45.0%
CCGTGTCAAGTATTATGGGA+CGG - chr2_4:13176338-13176357 Msa0316260:intron 45.0%
TGTCAAGTATTATGGGACGG+AGG - chr2_4:13176341-13176360 Msa0316260:intron 45.0%
GTCAAGTATTATGGGACGGA+GGG - chr2_4:13176342-13176361 Msa0316260:intron 45.0%
! CACGAGCTCTAACTTGAAGT+AGG + chr2_4:13176396-13176415 None:intergenic 45.0%
! CTACTTCAAGTTAGAGCTCG+TGG - chr2_4:13176394-13176413 Msa0316260:intron 45.0%
TTGCTTCGAGCAACGGAAAA+AGG - chr2_4:13176417-13176436 Msa0316260:intron 45.0%
TGGTGATAATTACAGGAGGG+GGG + chr2_4:13176478-13176497 None:intergenic 45.0%
ACAGGAAGATGTGGACCTAA+TGG - chr2_4:13177019-13177038 Msa0316260:intron 45.0%
GTGGACCTAATGGAACATAC+TGG - chr2_4:13177029-13177048 Msa0316260:intron 45.0%
TGTGTACAGAACCAAGTACC+AGG - chr2_4:13177808-13177827 Msa0316260:intron 45.0%
ACCAAGTACCAGGTGAGTAT+TGG - chr2_4:13177818-13177837 Msa0316260:intron 45.0%
TCCAATACTCACCTGGTACT+TGG + chr2_4:13177822-13177841 None:intergenic 45.0%
! CCACTTTAGCTTAACCCTTG+GGG + chr2_4:13177872-13177891 None:intergenic 45.0%
! GCCACTTTAGCTTAACCCTT+GGG + chr2_4:13177873-13177892 None:intergenic 45.0%
!! GCATTTCTCCATAGTGGACT+CGG + chr2_4:13178216-13178235 None:intergenic 45.0%
AGTCCACTATGGAGAAATGC+AGG - chr2_4:13178216-13178235 Msa0316260:intron 45.0%
!! TGGCATGAGTATTGGAGAAC+CGG - chr2_4:13178472-13178491 Msa0316260:intron 45.0%
GATCAAACCAACCAGCAAAC+CGG - chr2_4:13178687-13178706 Msa0316260:intron 45.0%
!! AAATTGACCGGTTTGCTGGT+TGG + chr2_4:13178697-13178716 None:intergenic 45.0%
!! CTTGAAATTGACCGGTTTGC+TGG + chr2_4:13178701-13178720 None:intergenic 45.0%
AGAAAAGGAGCAGATGTGAG+AGG - chr2_4:13179567-13179586 Msa0316260:intron 45.0%
GAAAAGGAGCAGATGTGAGA+GGG - chr2_4:13179568-13179587 Msa0316260:intron 45.0%
!! ATGTGAGAGGGTACTTTGTG+TGG - chr2_4:13179580-13179599 Msa0316260:intron 45.0%
! CACCAAGAGGATCAGCATTT+TGG - chr2_4:13179688-13179707 Msa0316260:intron 45.0%
ACAAGAATCTGGCAGGCATT+AGG - chr2_4:13179733-13179752 Msa0316260:intron 45.0%
AATCTGGCAGGCATTAGGTT+TGG - chr2_4:13179738-13179757 Msa0316260:intron 45.0%
ATCTGGCAGGCATTAGGTTT+GGG - chr2_4:13179739-13179758 Msa0316260:intron 45.0%
!!! TGTCTTTTTTGGTGGTGGTC+AGG - chr2_4:13179926-13179945 Msa0316260:CDS 45.0%
!!! GTCTTTTTTGGTGGTGGTCA+GGG - chr2_4:13179927-13179946 Msa0316260:CDS 45.0%
!!! AATTAAAATTTGTTTAATTA+TGG - chr2_4:13173212-13173231 Msa0316260:CDS 5.0%
!!! TTTTTAAATTTGTTTAATTA+TGG - chr2_4:13173259-13173278 Msa0316260:CDS 5.0%
!! AAATTTATGTAAATTATAAA+AGG + chr2_4:13174293-13174312 None:intergenic 5.0%
!!! TTTTTAATTTTTTTTTTACA+AGG + chr2_4:13175053-13175072 None:intergenic 5.0%
!!! AAAAAAAAATTGTTTTAAAA+AGG - chr2_4:13175085-13175104 Msa0316260:CDS 5.0%
!! TAAAATCATAAAAAAAAATT+CGG + chr2_4:13175218-13175237 None:intergenic 5.0%
!!! AAAAAAAAATTGTTTTAAAA+AGG + chr2_4:13175085-13175104 None:intergenic 5.0%
!!! TAATTTTAATACAAATTAAA+TGG + chr2_4:13176640-13176659 None:intergenic 5.0%
!! AATATAAGTTATATTATATT+AGG + chr2_4:13176839-13176858 None:intergenic 5.0%
!!! CATATTTTTTATTAAAAAAA+CGG - chr2_4:13178517-13178536 Msa0316260:intron 5.0%
AGGGCATGAAGGAGTTGGAA+TGG + chr2_4:13172375-13172394 None:intergenic 50.0%
! CAAAGAGGGCATGAAGGAGT+TGG + chr2_4:13172380-13172399 None:intergenic 50.0%
!! TAATGAGTTGGTCTGCCACG+TGG - chr2_4:13175306-13175325 Msa0316260:intron 50.0%
! ACTGTGCAACTTTTGCCACG+TGG + chr2_4:13175324-13175343 None:intergenic 50.0%
CACAGTCAGCAACTGTTACG+TGG - chr2_4:13175338-13175357 Msa0316260:intron 50.0%
GGACAGGTACATACTTCCTC+CGG + chr2_4:13175820-13175839 None:intergenic 50.0%
! AACAGCGGATTCTCAAGCAG+GGG + chr2_4:13176054-13176073 None:intergenic 50.0%
! GAACAGCGGATTCTCAAGCA+GGG + chr2_4:13176055-13176074 None:intergenic 50.0%
CAATGCTATAGCGCGAACAG+CGG + chr2_4:13176069-13176088 None:intergenic 50.0%
TATCCACCATCTCGTTGCTC+AGG - chr2_4:13177695-13177714 Msa0316260:intron 50.0%
AATGAGCCTGAGCAACGAGA+TGG + chr2_4:13177704-13177723 None:intergenic 50.0%
TCTCGTTGCTCAGGCTCATT+TGG - chr2_4:13177704-13177723 Msa0316260:intron 50.0%
GAGATGCGCATAATCAGGGT+CGG - chr2_4:13177840-13177859 Msa0316260:intron 50.0%
TTAGCTTAACCCTTGGGGCT+TGG + chr2_4:13177867-13177886 None:intergenic 50.0%
CCCCAAGGGTTAAGCTAAAG+TGG - chr2_4:13177869-13177888 Msa0316260:intron 50.0%
! GGCCACTTTAGCTTAACCCT+TGG + chr2_4:13177874-13177893 None:intergenic 50.0%
GCTAAAGTGGCCCTCGATTT+AGG - chr2_4:13177882-13177901 Msa0316260:intron 50.0%
TCAGAGCACAAGAATCTGGC+AGG - chr2_4:13179726-13179745 Msa0316260:intron 50.0%
AGTGTCTGCGGTTCGAACAC+CGG + chr2_4:13174430-13174449 None:intergenic 55.0%
!!! CTGACATGGTTTTGGCCACG+TGG - chr2_4:13175133-13175152 Msa0316260:intron 55.0%
! CGAACAGCGGATTCTCAAGC+AGG + chr2_4:13176056-13176075 None:intergenic 55.0%
! ATCTATAGCGGGACGGAGAG+AGG + chr2_4:13176111-13176130 None:intergenic 55.0%
CTCGTGGTTGCTTCGAGCAA+CGG - chr2_4:13176410-13176429 Msa0316260:intron 55.0%
ACAGGAGGGGGGCAGATATA+AGG + chr2_4:13176467-13176486 None:intergenic 55.0%
GCGCATCTCCAATACTCACC+TGG + chr2_4:13177829-13177848 None:intergenic 55.0%
GCTTGTGACCGAGTCCACTA+TGG - chr2_4:13178205-13178224 Msa0316260:intron 55.0%
CCAAGCAAGCGCAGTCTACA+AGG + chr2_4:13178820-13178839 None:intergenic 55.0%
CCTTGTAGACTGCGCTTGCT+TGG - chr2_4:13178817-13178836 Msa0316260:intron 55.0%
GCCTTAGGTAGGCAGGGTGT+AGG - chr2_4:13175611-13175630 Msa0316260:intron 60.0%
GCCTACACCCTGCCTACCTA+AGG + chr2_4:13175615-13175634 None:intergenic 60.0%
GAGCCTGAGCAACGAGATGG+TGG + chr2_4:13177701-13177720 None:intergenic 60.0%
! GAGTCAGTGCCGGGAGCCTT+AGG - chr2_4:13175596-13175615 Msa0316260:intron 65.0%
! CAGTGCCGGGAGCCTTAGGT+AGG - chr2_4:13175600-13175619 Msa0316260:intron 65.0%
CCCTGCCTACCTAAGGCTCC+CGG + chr2_4:13175608-13175627 None:intergenic 65.0%
CCGGGAGCCTTAGGTAGGCA+GGG - chr2_4:13175605-13175624 Msa0316260:intron 65.0%
AGGGTCGGTCCAAGCCCCAA+GGG - chr2_4:13177855-13177874 Msa0316260:intron 65.0%
GCCGGGAGCCTTAGGTAGGC+AGG - chr2_4:13175604-13175623 Msa0316260:intron 70.0%
CAGGGTCGGTCCAAGCCCCA+AGG - chr2_4:13177854-13177873 Msa0316260:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 13172349 13179982 13172349 ID=Msa0316260;Name=Msa0316260
chr2_4 mRNA 13172349 13179982 13172349 ID=Msa0316260-mRNA-1;Parent=Msa0316260;Name=Msa0316260-mRNA-1;_AED=0.27;_eAED=0.27;_QI=14|0.81|0.83|1|1|1|12|206|446
chr2_4 exon 13172349 13172762 13172349 ID=Msa0316260-mRNA-1:exon:5014;Parent=Msa0316260-mRNA-1
chr2_4 exon 13173196 13173304 13173196 ID=Msa0316260-mRNA-1:exon:5013;Parent=Msa0316260-mRNA-1
chr2_4 exon 13173404 13173506 13173404 ID=Msa0316260-mRNA-1:exon:5012;Parent=Msa0316260-mRNA-1
chr2_4 exon 13174024 13174093 13174024 ID=Msa0316260-mRNA-1:exon:5011;Parent=Msa0316260-mRNA-1
chr2_4 exon 13174198 13174313 13174198 ID=Msa0316260-mRNA-1:exon:5010;Parent=Msa0316260-mRNA-1
chr2_4 exon 13174502 13174754 13174502 ID=Msa0316260-mRNA-1:exon:5009;Parent=Msa0316260-mRNA-1
chr2_4 exon 13174831 13174918 13174831 ID=Msa0316260-mRNA-1:exon:5008;Parent=Msa0316260-mRNA-1
chr2_4 exon 13175072 13175146 13175072 ID=Msa0316260-mRNA-1:exon:5007;Parent=Msa0316260-mRNA-1
chr2_4 exon 13175233 13175308 13175233 ID=Msa0316260-mRNA-1:exon:5006;Parent=Msa0316260-mRNA-1
chr2_4 exon 13178419 13178477 13178419 ID=Msa0316260-mRNA-1:exon:5005;Parent=Msa0316260-mRNA-1
chr2_4 exon 13179359 13179383 13179359 ID=Msa0316260-mRNA-1:exon:5004;Parent=Msa0316260-mRNA-1
chr2_4 exon 13179810 13179982 13179810 ID=Msa0316260-mRNA-1:exon:5003;Parent=Msa0316260-mRNA-1
chr2_4 five_prime_UTR 13179969 13179982 13179969 ID=Msa0316260-mRNA-1:five_prime_utr;Parent=Msa0316260-mRNA-1
chr2_4 CDS 13179810 13179968 13179810 ID=Msa0316260-mRNA-1:cds;Parent=Msa0316260-mRNA-1
chr2_4 CDS 13179359 13179383 13179359 ID=Msa0316260-mRNA-1:cds;Parent=Msa0316260-mRNA-1
chr2_4 CDS 13178419 13178477 13178419 ID=Msa0316260-mRNA-1:cds;Parent=Msa0316260-mRNA-1
chr2_4 CDS 13175233 13175308 13175233 ID=Msa0316260-mRNA-1:cds;Parent=Msa0316260-mRNA-1
chr2_4 CDS 13175072 13175146 13175072 ID=Msa0316260-mRNA-1:cds;Parent=Msa0316260-mRNA-1
chr2_4 CDS 13174831 13174918 13174831 ID=Msa0316260-mRNA-1:cds;Parent=Msa0316260-mRNA-1
chr2_4 CDS 13174502 13174754 13174502 ID=Msa0316260-mRNA-1:cds;Parent=Msa0316260-mRNA-1
chr2_4 CDS 13174198 13174313 13174198 ID=Msa0316260-mRNA-1:cds;Parent=Msa0316260-mRNA-1
chr2_4 CDS 13174024 13174093 13174024 ID=Msa0316260-mRNA-1:cds;Parent=Msa0316260-mRNA-1
chr2_4 CDS 13173404 13173506 13173404 ID=Msa0316260-mRNA-1:cds;Parent=Msa0316260-mRNA-1
chr2_4 CDS 13173196 13173304 13173196 ID=Msa0316260-mRNA-1:cds;Parent=Msa0316260-mRNA-1
chr2_4 CDS 13172555 13172762 13172555 ID=Msa0316260-mRNA-1:cds;Parent=Msa0316260-mRNA-1
chr2_4 three_prime_UTR 13172349 13172554 13172349 ID=Msa0316260-mRNA-1:three_prime_utr;Parent=Msa0316260-mRNA-1
Gene Sequence

>Msa0316260

ATGGAGCTTCCATTCCAACTCCTTCATGCCCTCTTTGCACTAAGCTTTCTCTTCTCAATTTTCATGGGATCATGTGGTTTTGTGTCCTTAGAAAATAATTTAAGTTCATCCCCATTTCCACGTAACTTCCTCTTTGGAACTGCATCTTCTTCCTATCAGTTTGAAGGAGCATTCTTGAGTGATGGAACCATATTGGATGGAACTAACGGGGATGTTGCTGTTGATCATTACCATCGTTATCAGGAAGATGTGGACCTAATGGAACATACTGGAGTCAACAGTTATCGATTTTCATTATCATGGGCCAGAATTCTACCAAAAGGTAGATTTGGAAAGGTGAACAAAGCTGGCATCAATTACTATAACAAGCTAATTGACGCACTTGTCGATAAAGGAATTGAACCTTTTGTCACAATAACACATTATGACATTCCTCAAGAACTTGAGGAGAGATATAAAAGTTGGCTAAGTCATGAAATTCAGGAAGATTTTAGGTATTATGCAGATATATGCTTCAAGTACTTTGGAGACAGAGTGAAATATTGGGTGACATTTAATGAACCAAATGTTGCAGTTATTTGTGGATATAGAACAGGTGTGTATCCACCATCTCGTTGCTCAGGCTCATTTGGCAATTGCAGCTATGGGAATTCTGAGAGAGAGCCTTTCATTGCTGCCTCTAATGTCATCTTATCACATCTGGCTGCTGTTGATGTGTACAGAACCAAGTACCAGAAAAATCAGGGAGGAAATATTGGAATTGCTATGAATGCTATATGGTATGAACCATTTAGCAACTCTTCGGAAGACAAGTTAGCTGCTGAGAGAGCTCAATCATTTTACATGAATTGGTTTTTGGACCCAATTATACTAGGAAAGTATCCAGCAGAAATGCATGAAATACTAGGACCTGAGCTCCTAACTGCGCTTGCTTGGTTTTATGTTCACCCACAAGGAATGGAAAATATAGTGACTTACATAAAGGAAAGGTACAACAACATTCCAATGTTCATTACAGAAAATGGATTTGGGACAAGTGAGCGTTCTTACCCCACCAGTGAAGATGAATTGAACGATGTCAAAAGAGTGGAGTACTTGAGTAGTTACTTGGATTCTCTAGCAACAACAATAAGAAAAGGAGCAGATGTGAGAGGGTACTTTGTGTGGTCTCTTCTAGACAATTTTGAGTGGAATCATGGATACAGTATAAGGTTTGGACTTCATCATGTGGACTTAGCCACTCTCAATAGAACACCAAGAGGATCAGCATTTTGGTACAAAAATTTCATTTCAGAGCACAAGAATCTGGCAGGCATTAGGTTTGGGCATGCTCAAGTGTGA
Protein sequence

>Msa0316260

MELPFQLLHALFALSFLFSIFMGSCGFVSLENNLSSSPFPRNFLFGTASSSYQFEGAFLSDGTILDGTNGDVAVDHYHRYQEDVDLMEHTGVNSYRFSLSWARILPKGRFGKVNKAGINYYNKLIDALVDKGIEPFVTITHYDIPQELEERYKSWLSHEIQEDFRYYADICFKYFGDRVKYWVTFNEPNVAVICGYRTGVYPPSRCSGSFGNCSYGNSEREPFIAASNVILSHLAAVDVYRTKYQKNQGGNIGIAMNAIWYEPFSNSSEDKLAAERAQSFYMNWFLDPIILGKYPAEMHEILGPELLTALAWFYVHPQGMENIVTYIKERYNNIPMFITENGFGTSERSYPTSEDELNDVKRVEYLSSYLDSLATTIRKGADVRGYFVWSLLDNFEWNHGYSIRFGLHHVDLATLNRTPRGSAFWYKNFISEHKNLAGIRFGHAQV*