Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316360 | XP_003597050.2 | 62.766 | 282 | 42 | 4 | 10 | 228 | 2162 | 2443 | 8.16e-96 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316360 | sp|O23372|ATXR3_ARATH | 48.936 | 282 | 81 | 6 | 10 | 228 | 1997 | 2278 | 5.74e-78 | 260 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0316320 | Msa0316360 | 0.849482 | 3.144327e-60 | -8.615850e-47 |
| Msa0316360 | Msa0316370 | 0.919266 | 5.577421e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316360 | MtrunA17_Chr2g0323101 | 62.766 | 282 | 42 | 4 | 10 | 228 | 2162 | 2443 | 7.51e-100 | 320 |
| Msa0316360 | MtrunA17_Chr4g0023741 | 50.177 | 283 | 78 | 4 | 10 | 229 | 2321 | 2603 | 2.86e-76 | 252 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0316360 | AT4G15180.1 | 48.936 | 282 | 81 | 6 | 10 | 228 | 1997 | 2278 | 5.84e-79 | 260 |
Find 55 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGATCACAGGCATGAATTT+TGG | 0.215557 | 2_4:+13361435 | None:intergenic |
| TATGGTGAAAATTATTGTTT+AGG | 0.255615 | 2_4:-13360934 | Msa0316360:CDS |
| CTTCTGAGCCTTGGCATAAA+AGG | 0.282865 | 2_4:+13360816 | None:intergenic |
| AATGAACCATATCTGGTCTT+TGG | 0.308868 | 2_4:+13359699 | None:intergenic |
| TAAGTTGGGAGCAGAGATTC+AGG | 0.311592 | 2_4:-13360971 | Msa0316360:CDS |
| ATCTTTGTGGCTGCTTCTCC+TGG | 0.313545 | 2_4:+13359728 | None:intergenic |
| TGAATATCTGCTGAACTTGA+AGG | 0.345612 | 2_4:+13361415 | None:intergenic |
| AGCTTCGGAAATCTCTATTA+TGG | 0.360921 | 2_4:-13361387 | Msa0316360:intron |
| ATGGTGAAAATTATTGTTTA+GGG | 0.373647 | 2_4:-13360933 | Msa0316360:CDS |
| ATGAACCATATCTGGTCTTT+GGG | 0.386099 | 2_4:+13359700 | None:intergenic |
| CAAGTGGACTTGGACAAATA+TGG | 0.386620 | 2_4:+13361016 | None:intergenic |
| AGAAACTCTAAAGCATAATC+TGG | 0.389687 | 2_4:-13362546 | Msa0316360:CDS |
| CAGGAGTACCGAGAAGTATA+TGG | 0.400871 | 2_4:-13360952 | Msa0316360:CDS |
| GGGCCTAAGTCAAGTGGACT+TGG | 0.403744 | 2_4:+13361006 | None:intergenic |
| TCCCAACTTATTAGTATACT+TGG | 0.405043 | 2_4:+13360984 | None:intergenic |
| CAGATCTATGCTGGCAAGAA+TGG | 0.406589 | 2_4:-13360758 | Msa0316360:intron |
| TTCAACCAATGAACCATATC+TGG | 0.410757 | 2_4:+13359692 | None:intergenic |
| CTTGGCCCAAAGACCAGATA+TGG | 0.411544 | 2_4:-13359705 | Msa0316360:CDS |
| CCCCAAGTATACTAATAAGT+TGG | 0.418984 | 2_4:-13360986 | Msa0316360:CDS |
| AAGGAGTGATGCTGAGGTTC+AGG | 0.419554 | 2_4:-13362480 | Msa0316360:intron |
| CCCAACTTATTAGTATACTT+GGG | 0.436748 | 2_4:+13360985 | None:intergenic |
| TGCAGATCCAGATCGTAGTT+TGG | 0.437620 | 2_4:-13360881 | Msa0316360:CDS |
| TTGTGATGGCTTCTGAGCCT+TGG | 0.445539 | 2_4:+13360807 | None:intergenic |
| ATGAATCTCACCTTCACAAC+AGG | 0.451215 | 2_4:+13362596 | None:intergenic |
| AGAAGCAGCCACAAAGATCT+TGG | 0.455102 | 2_4:-13359723 | Msa0316360:CDS |
| AGCATAGATCTGACAGTCCT+TGG | 0.462345 | 2_4:+13360769 | None:intergenic |
| TAGTTTGGTTAGAGCAAGTA+GGG | 0.465114 | 2_4:-13360866 | Msa0316360:CDS |
| CCCAAGTATACTAATAAGTT+GGG | 0.466754 | 2_4:-13360985 | Msa0316360:CDS |
| AAAGACCAGATATGGTTCAT+TGG | 0.474203 | 2_4:-13359697 | Msa0316360:CDS |
| TCTTTGGGCCAAGATCTTTG+TGG | 0.474248 | 2_4:+13359715 | None:intergenic |
| TGTCCAAGTCCACTTGACTT+AGG | 0.478029 | 2_4:-13361009 | Msa0316360:CDS |
| AGCCTTGGCATAAAAGGAAA+TGG | 0.480915 | 2_4:+13360822 | None:intergenic |
| ATAATCTATTCTGTATATCC+AGG | 0.493164 | 2_4:-13359746 | Msa0316360:CDS |
| GCTCTAACCAAACTACGATC+TGG | 0.501154 | 2_4:+13360874 | None:intergenic |
| AGAGACAAAACAATTGCTTC+AGG | 0.522382 | 2_4:+13361542 | None:intergenic |
| TGCTGAACTTGAAGGATCAC+AGG | 0.522594 | 2_4:+13361423 | None:intergenic |
| AAGGACTGTCAGATCTATGC+TGG | 0.543850 | 2_4:-13360767 | Msa0316360:CDS |
| TGACATTTCTCCTGTTGTGA+AGG | 0.546410 | 2_4:-13362606 | Msa0316360:CDS |
| CTGAGCTTCTCAAGAGGAGG+CGG | 0.552982 | 2_4:+13361566 | None:intergenic |
| ATGTACATCTTAAAGTTGAA+AGG | 0.572731 | 2_4:-13362499 | Msa0316360:CDS |
| AAAATCGTGTTTATGATCCA+AGG | 0.593052 | 2_4:-13360786 | Msa0316360:CDS |
| TTGGTTGAAACGCTGATCTG+AGG | 0.594439 | 2_4:-13359678 | None:intergenic |
| TACTTGGGGCCTAAGTCAAG+TGG | 0.598133 | 2_4:+13361000 | None:intergenic |
| CCAACTTATTAGTATACTTG+GGG | 0.600515 | 2_4:+13360986 | None:intergenic |
| TCAGTGCATAGCTGCTCATG+TGG | 0.610732 | 2_4:-13361485 | Msa0316360:CDS |
| AGGAGAGGGATCATTTGTTG+AGG | 0.614378 | 2_4:-13361515 | Msa0316360:CDS |
| AGTTGAAAGGAGTGATGCTG+AGG | 0.614794 | 2_4:-13362486 | Msa0316360:CDS |
| TCAGGACTGAGCTTCTCAAG+AGG | 0.624527 | 2_4:+13361560 | None:intergenic |
| GTAGTTTGGTTAGAGCAAGT+AGG | 0.630933 | 2_4:-13360867 | Msa0316360:CDS |
| GGACTGAGCTTCTCAAGAGG+AGG | 0.632371 | 2_4:+13361563 | None:intergenic |
| TTATGCTTTAGAGTTTCTTG+AGG | 0.637942 | 2_4:+13362551 | None:intergenic |
| GTTTGGTTAGAGCAAGTAGG+GGG | 0.668529 | 2_4:-13360864 | Msa0316360:CDS |
| ACTTGGACAAATATGGAAAG+CGG | 0.697664 | 2_4:+13361023 | None:intergenic |
| GCATAAAAGGAAATGGTGTG+TGG | 0.709578 | 2_4:+13360829 | None:intergenic |
| AGTTTGGTTAGAGCAAGTAG+GGG | 0.711226 | 2_4:-13360865 | Msa0316360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTCCATAAAATTATA+TGG | - | chr2_4:13361650-13361669 | Msa0316360:intron | 10.0% |
| !! | AAGTTAATGAAAAATAATAA+AGG | + | chr2_4:13362077-13362096 | None:intergenic | 10.0% |
| !! | TTGAAAACTATAAAATGAAA+TGG | + | chr2_4:13360628-13360647 | None:intergenic | 15.0% |
| !!! | TTTCATTTTATAGTTTTCAA+TGG | - | chr2_4:13360628-13360647 | Msa0316360:intron | 15.0% |
| !! | TTATATTGCTTACTAATAAT+TGG | - | chr2_4:13361941-13361960 | Msa0316360:intron | 15.0% |
| !!! | TTCATTAACTTTTAATAGTT+TGG | - | chr2_4:13362086-13362105 | Msa0316360:intron | 15.0% |
| !! | AAAATCTTAGAATTTCGATT+TGG | + | chr2_4:13359995-13360014 | None:intergenic | 20.0% |
| !!! | TCGAAATTCTAAGATTTTAT+TGG | - | chr2_4:13359997-13360016 | Msa0316360:intron | 20.0% |
| !! | TAGGATGAAAAAAAATTACA+AGG | - | chr2_4:13360146-13360165 | Msa0316360:intron | 20.0% |
| !! | AAGGAAAATAAAAGTTTCAA+TGG | + | chr2_4:13360207-13360226 | None:intergenic | 20.0% |
| !! | TGTACAAAAGAAAAAAAGTT+TGG | - | chr2_4:13360355-13360374 | Msa0316360:intron | 20.0% |
| !!! | AATGGATTTTAATCTTTGTT+GGG | - | chr2_4:13360646-13360665 | Msa0316360:intron | 20.0% |
| !! | AGAATACAAACATTAAAGAT+TGG | + | chr2_4:13361016-13361035 | None:intergenic | 20.0% |
| !! | TATTTATATGTACAAGACTT+CGG | + | chr2_4:13361070-13361089 | None:intergenic | 20.0% |
| !!! | AGTCTTGTACATATAAATAT+CGG | - | chr2_4:13361071-13361090 | Msa0316360:intron | 20.0% |
| !! | TATGGTGAAAATTATTGTTT+AGG | - | chr2_4:13361357-13361376 | Msa0316360:intron | 20.0% |
| !! | ATGGTGAAAATTATTGTTTA+GGG | - | chr2_4:13361358-13361377 | Msa0316360:intron | 20.0% |
| !! | AGAATAAATAGAGAAAATAC+TGG | + | chr2_4:13361844-13361863 | None:intergenic | 20.0% |
| !! | ATATAATAGAAAAACTAGGA+GGG | + | chr2_4:13361927-13361946 | None:intergenic | 20.0% |
| !! | AATATAATAGAAAAACTAGG+AGG | + | chr2_4:13361928-13361947 | None:intergenic | 20.0% |
| !! | AGCAATATAATAGAAAAACT+AGG | + | chr2_4:13361931-13361950 | None:intergenic | 20.0% |
| !!! | TAAGTGTTCATTTTTAAACT+CGG | + | chr2_4:13362176-13362195 | None:intergenic | 20.0% |
| ! | ATGTACATCTTAAAGTTGAA+AGG | - | chr2_4:13359792-13359811 | Msa0316360:CDS | 25.0% |
| ! | TGGCCTAAAAATATTATAAG+TGG | - | chr2_4:13359923-13359942 | Msa0316360:intron | 25.0% |
| ! | GGCCTAAAAATATTATAAGT+GGG | - | chr2_4:13359924-13359943 | Msa0316360:intron | 25.0% |
| ! | GCCTAAAAATATTATAAGTG+GGG | - | chr2_4:13359925-13359944 | Msa0316360:intron | 25.0% |
| ! | CCTAAAAATATTATAAGTGG+GGG | - | chr2_4:13359926-13359945 | Msa0316360:intron | 25.0% |
| ! | TTGAATGTGATATAGTCTAT+AGG | - | chr2_4:13360127-13360146 | Msa0316360:intron | 25.0% |
| ! | CACTTAAAATATGTTCATAG+AGG | - | chr2_4:13360378-13360397 | Msa0316360:intron | 25.0% |
| !!! | CAATGGATTTTAATCTTTGT+TGG | - | chr2_4:13360645-13360664 | Msa0316360:intron | 25.0% |
| !!! | TGTGTATTTTTTTGAAGAAG+TGG | - | chr2_4:13360955-13360974 | Msa0316360:CDS | 25.0% |
| !!! | AAAATCTCTTGTTTTCTTTC+AGG | - | chr2_4:13361225-13361244 | Msa0316360:intron | 25.0% |
| !! | AATTTTCACCATATACTTCT+CGG | + | chr2_4:13361350-13361369 | None:intergenic | 25.0% |
| !! | GATGGAACCATATAATTTTA+TGG | + | chr2_4:13361660-13361679 | None:intergenic | 25.0% |
| ! | AGTTTCTATCATATTGTTGA+TGG | + | chr2_4:13361678-13361697 | None:intergenic | 25.0% |
| ! | ATCAACAATATGATAGAAAC+TGG | - | chr2_4:13361677-13361696 | Msa0316360:intron | 25.0% |
| ! | CAAATGAATAGTAATTACCA+CGG | - | chr2_4:13361711-13361730 | Msa0316360:intron | 25.0% |
| ! | AAATGAATAGTAATTACCAC+GGG | - | chr2_4:13361712-13361731 | Msa0316360:intron | 25.0% |
| !! | GGTTTTTGAATTAGAAGTTA+TGG | + | chr2_4:13361886-13361905 | None:intergenic | 25.0% |
| ! | TTCAAAAACCATTAAGAAAC+AGG | - | chr2_4:13361896-13361915 | Msa0316360:intron | 25.0% |
| ! | TAGATGAATAGTGATGTTAA+AGG | - | chr2_4:13361996-13362015 | Msa0316360:intron | 25.0% |
| ! | AGATGAATAGTGATGTTAAA+GGG | - | chr2_4:13361997-13362016 | Msa0316360:intron | 25.0% |
| !!! | AAGTGTTCATTTTTAAACTC+GGG | + | chr2_4:13362175-13362194 | None:intergenic | 25.0% |
| ! | AGATTATTAAAGTAGCTTTC+CGG | - | chr2_4:13362243-13362262 | Msa0316360:intron | 25.0% |
| !!! | TGCATTTGTTTTTTGTTCAT+AGG | - | chr2_4:13362325-13362344 | Msa0316360:intron | 25.0% |
| ! | ATAATCTATTCTGTATATCC+AGG | - | chr2_4:13362545-13362564 | Msa0316360:CDS | 25.0% |
| !! | TTATGCTTTAGAGTTTCTTG+AGG | + | chr2_4:13359743-13359762 | None:intergenic | 30.0% |
| !! | AGAAACTCTAAAGCATAATC+TGG | - | chr2_4:13359745-13359764 | Msa0316360:CDS | 30.0% |
| GTTCTACATTGGATGTAATA+TGG | - | chr2_4:13359903-13359922 | Msa0316360:intron | 30.0% | |
| ! | CCCCCACTTATAATATTTTT+AGG | + | chr2_4:13359929-13359948 | None:intergenic | 30.0% |
| TATTCAAGCTTATCCCAAAT+TGG | - | chr2_4:13360020-13360039 | Msa0316360:intron | 30.0% | |
| ACAAATGATCCAACCAATTT+GGG | + | chr2_4:13360036-13360055 | None:intergenic | 30.0% | |
| AACAAATGATCCAACCAATT+TGG | + | chr2_4:13360037-13360056 | None:intergenic | 30.0% | |
| !! | TTGGTTGGATCATTTGTTAT+CGG | - | chr2_4:13360039-13360058 | Msa0316360:intron | 30.0% |
| GACTATATCACATTCAATGT+GGG | + | chr2_4:13360124-13360143 | None:intergenic | 30.0% | |
| AGACTATATCACATTCAATG+TGG | + | chr2_4:13360125-13360144 | None:intergenic | 30.0% | |
| GAGTCAAACAAAGATGTTAA+AGG | + | chr2_4:13360226-13360245 | None:intergenic | 30.0% | |
| ATCTAGTTGTCACTCATTAT+AGG | - | chr2_4:13360279-13360298 | Msa0316360:intron | 30.0% | |
| TCTAGTTGTCACTCATTATA+GGG | - | chr2_4:13360280-13360299 | Msa0316360:intron | 30.0% | |
| GCTATTGTTAAAATAAGCAC+CGG | - | chr2_4:13360431-13360450 | Msa0316360:intron | 30.0% | |
| CTATTGTTAAAATAAGCACC+GGG | - | chr2_4:13360432-13360451 | Msa0316360:intron | 30.0% | |
| TGTTAAGGTAGAAAGTCAAA+TGG | - | chr2_4:13360462-13360481 | Msa0316360:intron | 30.0% | |
| TCTTTGTTGGGATATATTAC+AGG | - | chr2_4:13360658-13360677 | Msa0316360:intron | 30.0% | |
| CAGATATTCAAAAAGAGCTT+CGG | - | chr2_4:13360889-13360908 | Msa0316360:CDS | 30.0% | |
| TCCCTCAACTTATATAGAAA+GGG | + | chr2_4:13361041-13361060 | None:intergenic | 30.0% | |
| ATCCCTCAACTTATATAGAA+AGG | + | chr2_4:13361042-13361061 | None:intergenic | 30.0% | |
| ACTTGGTATACGTGTAAATA+TGG | + | chr2_4:13361119-13361138 | None:intergenic | 30.0% | |
| !! | ATGTATTCCAAAGAAGTACT+TGG | + | chr2_4:13361136-13361155 | None:intergenic | 30.0% |
| CCAACTTATTAGTATACTTG+GGG | + | chr2_4:13361308-13361327 | None:intergenic | 30.0% | |
| CCCAACTTATTAGTATACTT+GGG | + | chr2_4:13361309-13361328 | None:intergenic | 30.0% | |
| CCCAAGTATACTAATAAGTT+GGG | - | chr2_4:13361306-13361325 | Msa0316360:intron | 30.0% | |
| TCCCAACTTATTAGTATACT+TGG | + | chr2_4:13361310-13361329 | None:intergenic | 30.0% | |
| ! | TCATAAACACGATTTTGTGA+TGG | + | chr2_4:13361501-13361520 | None:intergenic | 30.0% |
| AAAATCGTGTTTATGATCCA+AGG | - | chr2_4:13361505-13361524 | Msa0316360:CDS | 30.0% | |
| TCTTAACTTAGTTCCTAAGT+AGG | - | chr2_4:13361578-13361597 | Msa0316360:intron | 30.0% | |
| AACACAAGGGATAAAAATTC+TGG | - | chr2_4:13361622-13361641 | Msa0316360:intron | 30.0% | |
| AAGCTCTCAAATTAATGGAA+AGG | + | chr2_4:13361769-13361788 | None:intergenic | 30.0% | |
| ! | TTTCCATTAATTTGAGAGCT+TGG | - | chr2_4:13361768-13361787 | Msa0316360:intron | 30.0% |
| ATAGAGAAAATACTGGAAAG+TGG | + | chr2_4:13361837-13361856 | None:intergenic | 30.0% | |
| TAACATCACTATTCATCTAC+TGG | + | chr2_4:13361995-13362014 | None:intergenic | 30.0% | |
| ATGAGATATCTAGTGATAGA+TGG | + | chr2_4:13362202-13362221 | None:intergenic | 30.0% | |
| GATTATTAAAGTAGCTTTCC+GGG | - | chr2_4:13362244-13362263 | Msa0316360:intron | 30.0% | |
| ACAAAAAACAAATGCATGCA+AGG | + | chr2_4:13362321-13362340 | None:intergenic | 30.0% | |
| AGATGTGTCAAATATCATGT+AGG | + | chr2_4:13362379-13362398 | None:intergenic | 30.0% | |
| !! | ACTCTTTTTGTCTTTGTTGT+TGG | - | chr2_4:13362517-13362536 | Msa0316360:CDS | 30.0% |
| ! | TATGATAATGAAGCACGCAA+GGG | + | chr2_4:13359850-13359869 | None:intergenic | 35.0% |
| ! | TTATGATAATGAAGCACGCA+AGG | + | chr2_4:13359851-13359870 | None:intergenic | 35.0% |
| TCTTGTTGAGAGTTCTACAT+TGG | - | chr2_4:13359892-13359911 | Msa0316360:intron | 35.0% | |
| !! | ACCTTACAAGCTGATTTTGT+AGG | - | chr2_4:13359958-13359977 | Msa0316360:intron | 35.0% |
| !! | CCTTACAAGCTGATTTTGTA+GGG | - | chr2_4:13359959-13359978 | Msa0316360:intron | 35.0% |
| !! | TGGTTGGATCATTTGTTATC+GGG | - | chr2_4:13360040-13360059 | Msa0316360:intron | 35.0% |
| TAAGCAATTAGACCATAGAG+AGG | + | chr2_4:13360314-13360333 | None:intergenic | 35.0% | |
| ACATCTCATACTGTATGTCA+AGG | - | chr2_4:13360515-13360534 | Msa0316360:intron | 35.0% | |
| ! | ACATACTTAGAAGGGAGTAT+TGG | + | chr2_4:13360547-13360566 | None:intergenic | 35.0% |
| TGCCTTCAACATACTTAGAA+GGG | + | chr2_4:13360555-13360574 | None:intergenic | 35.0% | |
| TTGCCTTCAACATACTTAGA+AGG | + | chr2_4:13360556-13360575 | None:intergenic | 35.0% | |
| GTTGGGATATATTACAGGTA+AGG | - | chr2_4:13360663-13360682 | Msa0316360:intron | 35.0% | |
| AGAGACAAAACAATTGCTTC+AGG | + | chr2_4:13360752-13360771 | None:intergenic | 35.0% | |
| !! | TGAAGCAATTGTTTTGTCTC+TGG | - | chr2_4:13360751-13360770 | Msa0316360:intron | 35.0% |
| !! | CAATTGTTTTGTCTCTGGAA+AGG | - | chr2_4:13360756-13360775 | Msa0316360:intron | 35.0% |
| TGAATATCTGCTGAACTTGA+AGG | + | chr2_4:13360879-13360898 | None:intergenic | 35.0% | |
| AGCTTCGGAAATCTCTATTA+TGG | - | chr2_4:13360904-13360923 | Msa0316360:CDS | 35.0% | |
| CCTCAACTTATATAGAAAGG+GGG | + | chr2_4:13361039-13361058 | None:intergenic | 35.0% | |
| CCCTCAACTTATATAGAAAG+GGG | + | chr2_4:13361040-13361059 | None:intergenic | 35.0% | |
| ! | CCCCTTTCTATATAAGTTGA+GGG | - | chr2_4:13361037-13361056 | Msa0316360:CDS | 35.0% |
| ACGTATACCAAGTACTTCTT+TGG | - | chr2_4:13361126-13361145 | Msa0316360:intron | 35.0% | |
| ACTTGGACAAATATGGAAAG+CGG | + | chr2_4:13361271-13361290 | None:intergenic | 35.0% | |
| CCCCAAGTATACTAATAAGT+TGG | - | chr2_4:13361305-13361324 | Msa0316360:intron | 35.0% | |
| TAGTTTGGTTAGAGCAAGTA+GGG | - | chr2_4:13361425-13361444 | Msa0316360:CDS | 35.0% | |
| TTCAGGAAAGTAACAACACA+AGG | - | chr2_4:13361608-13361627 | Msa0316360:intron | 35.0% | |
| TCAGGAAAGTAACAACACAA+GGG | - | chr2_4:13361609-13361628 | Msa0316360:intron | 35.0% | |
| CCAAGACTCTTGAATTTCTT+GGG | + | chr2_4:13361740-13361759 | None:intergenic | 35.0% | |
| CCAAGAAATTCAAGAGTCTT+GGG | - | chr2_4:13361738-13361757 | Msa0316360:intron | 35.0% | |
| ! | ACAGTTATCGATTGGCAATT+GGG | + | chr2_4:13361801-13361820 | None:intergenic | 35.0% |
| TACTGGAAAGTGGAAAGAAT+AGG | + | chr2_4:13361827-13361846 | None:intergenic | 35.0% | |
| ATAGAAAAACTAGGAGGGTT+GGG | + | chr2_4:13361922-13361941 | None:intergenic | 35.0% | |
| AATAGAAAAACTAGGAGGGT+TGG | + | chr2_4:13361923-13361942 | None:intergenic | 35.0% | |
| TCAACATCATTTCACCTACT+GGG | + | chr2_4:13362034-13362053 | None:intergenic | 35.0% | |
| TTCAACATCATTTCACCTAC+TGG | + | chr2_4:13362035-13362054 | None:intergenic | 35.0% | |
| GAATGCCCAAAACAAGAAAA+GGG | - | chr2_4:13362108-13362127 | Msa0316360:intron | 35.0% | |
| AATGCCCAAAACAAGAAAAG+GGG | - | chr2_4:13362109-13362128 | Msa0316360:intron | 35.0% | |
| TGAGAAAGCCAAGTAATGAA+GGG | - | chr2_4:13362271-13362290 | Msa0316360:intron | 35.0% | |
| CAAGAAATCCCTTCATTACT+TGG | + | chr2_4:13362282-13362301 | None:intergenic | 35.0% | |
| CAAGTAATGAAGGGATTTCT+TGG | - | chr2_4:13362280-13362299 | Msa0316360:intron | 35.0% | |
| TGACACATCTCTATCTTTCA+TGG | - | chr2_4:13362389-13362408 | Msa0316360:intron | 35.0% | |
| TAGATAAAGACCTCTTCACT+TGG | - | chr2_4:13362432-13362451 | Msa0316360:intron | 35.0% | |
| AGATAAAGACCTCTTCACTT+GGG | - | chr2_4:13362433-13362452 | Msa0316360:intron | 35.0% | |
| AAATCATATACCTAGCCTAC+AGG | + | chr2_4:13362492-13362511 | None:intergenic | 35.0% | |
| ! | ATGAACCATATCTGGTCTTT+GGG | + | chr2_4:13362594-13362613 | None:intergenic | 35.0% |
| ! | AATGAACCATATCTGGTCTT+TGG | + | chr2_4:13362595-13362614 | None:intergenic | 35.0% |
| AAAGACCAGATATGGTTCAT+TGG | - | chr2_4:13362594-13362613 | Msa0316360:CDS | 35.0% | |
| TTCAACCAATGAACCATATC+TGG | + | chr2_4:13362602-13362621 | None:intergenic | 35.0% | |
| TGACATTTCTCCTGTTGTGA+AGG | - | chr2_4:13359685-13359704 | Msa0316360:CDS | 40.0% | |
| ATGAATCTCACCTTCACAAC+AGG | + | chr2_4:13359698-13359717 | None:intergenic | 40.0% | |
| CCCTACAAAATCAGCTTGTA+AGG | + | chr2_4:13359962-13359981 | None:intergenic | 40.0% | |
| CAAGCTTATCCCAAATTGGT+TGG | - | chr2_4:13360024-13360043 | Msa0316360:intron | 40.0% | |
| ATGATCCTGATGTTCAGTCT+TGG | - | chr2_4:13360074-13360093 | Msa0316360:intron | 40.0% | |
| ATGTTCAGTCTTGGACATGA+AGG | - | chr2_4:13360083-13360102 | Msa0316360:intron | 40.0% | |
| ! | TCTTTGTTTGACTCATGCTG+AGG | - | chr2_4:13360232-13360251 | Msa0316360:intron | 40.0% |
| ! | CTTTGTTTGACTCATGCTGA+GGG | - | chr2_4:13360233-13360252 | Msa0316360:intron | 40.0% |
| !! | CAACTAGATTCTGAAGCCTT+TGG | + | chr2_4:13360268-13360287 | None:intergenic | 40.0% |
| CTACCTTAACAGTATTAGCC+CGG | + | chr2_4:13360453-13360472 | None:intergenic | 40.0% | |
| CTCCCTTCTAAGTATGTTGA+AGG | - | chr2_4:13360550-13360569 | Msa0316360:intron | 40.0% | |
| !! | TTTTGTCTCTGGAAAGGAGA+GGG | - | chr2_4:13360762-13360781 | Msa0316360:CDS | 40.0% |
| ! | AGGATCACAGGCATGAATTT+TGG | + | chr2_4:13360859-13360878 | None:intergenic | 40.0% |
| !!! | TGTGTGTGTGTGTTTTAACC+TGG | - | chr2_4:13360982-13361001 | Msa0316360:CDS | 40.0% |
| TAAAGATTGGAAGTTCCACC+AGG | + | chr2_4:13361003-13361022 | None:intergenic | 40.0% | |
| CCCCCTTTCTATATAAGTTG+AGG | - | chr2_4:13361036-13361055 | Msa0316360:CDS | 40.0% | |
| ! | CAAGTGGACTTGGACAAATA+TGG | + | chr2_4:13361278-13361297 | None:intergenic | 40.0% |
| !!! | GTTTAGGGCAGCTGATTTTT+TGG | - | chr2_4:13361373-13361392 | Msa0316360:intron | 40.0% |
| GTAGTTTGGTTAGAGCAAGT+AGG | - | chr2_4:13361424-13361443 | Msa0316360:CDS | 40.0% | |
| AGTTTGGTTAGAGCAAGTAG+GGG | - | chr2_4:13361426-13361445 | Msa0316360:CDS | 40.0% | |
| GCATAAAAGGAAATGGTGTG+TGG | + | chr2_4:13361465-13361484 | None:intergenic | 40.0% | |
| ! | CACCATTTCCTTTTATGCCA+AGG | - | chr2_4:13361467-13361486 | Msa0316360:CDS | 40.0% |
| AGCCTTGGCATAAAAGGAAA+TGG | + | chr2_4:13361472-13361491 | None:intergenic | 40.0% | |
| CCCAAGAAATTCAAGAGTCT+TGG | - | chr2_4:13361737-13361756 | Msa0316360:intron | 40.0% | |
| CCCAAGACTCTTGAATTTCT+TGG | + | chr2_4:13361741-13361760 | None:intergenic | 40.0% | |
| AGGCCAAGCTCTCAAATTAA+TGG | + | chr2_4:13361774-13361793 | None:intergenic | 40.0% | |
| ! | TTATCGATTGGCAATTGGGA+GGG | + | chr2_4:13361797-13361816 | None:intergenic | 40.0% |
| ! | GACAGTTATCGATTGGCAAT+TGG | + | chr2_4:13361802-13361821 | None:intergenic | 40.0% |
| ATAGGCAGACAGTTATCGAT+TGG | + | chr2_4:13361809-13361828 | None:intergenic | 40.0% | |
| TCATTTCACCTACTGGGATT+TGG | + | chr2_4:13362028-13362047 | None:intergenic | 40.0% | |
| GGAATGCCCAAAACAAGAAA+AGG | - | chr2_4:13362107-13362126 | Msa0316360:intron | 40.0% | |
| !!! | TGTGCCCCTTTTCTTGTTTT+GGG | + | chr2_4:13362116-13362135 | None:intergenic | 40.0% |
| TATTAAAGTAGCTTTCCGGG+CGG | - | chr2_4:13362247-13362266 | Msa0316360:intron | 40.0% | |
| CTGAGAAAGCCAAGTAATGA+AGG | - | chr2_4:13362270-13362289 | Msa0316360:intron | 40.0% | |
| AAAAAGCTACCCAAGTGAAG+AGG | + | chr2_4:13362445-13362464 | None:intergenic | 40.0% | |
| GTTGACAATTACACACCTGT+AGG | - | chr2_4:13362474-13362493 | Msa0316360:intron | 40.0% | |
| AGTTGAAAGGAGTGATGCTG+AGG | - | chr2_4:13359805-13359824 | Msa0316360:intron | 45.0% | |
| CTGAACATCAGGATCATGAC+CGG | + | chr2_4:13360071-13360090 | None:intergenic | 45.0% | |
| CATGTCCAAGACTGAACATC+AGG | + | chr2_4:13360082-13360101 | None:intergenic | 45.0% | |
| TTCAGTCTTGGACATGAAGG+AGG | - | chr2_4:13360086-13360105 | Msa0316360:intron | 45.0% | |
| TCAGTCTTGGACATGAAGGA+GGG | - | chr2_4:13360087-13360106 | Msa0316360:intron | 45.0% | |
| ! | CTGAGGGAGTATACAACCAA+AGG | - | chr2_4:13360249-13360268 | Msa0316360:intron | 45.0% |
| !! | GTTTTGTCTCTGGAAAGGAG+AGG | - | chr2_4:13360761-13360780 | Msa0316360:CDS | 45.0% |
| ! | AGGAGAGGGATCATTTGTTG+AGG | - | chr2_4:13360776-13360795 | Msa0316360:CDS | 45.0% |
| TGCTGAACTTGAAGGATCAC+AGG | + | chr2_4:13360871-13360890 | None:intergenic | 45.0% | |
| !!! | GTGTGTGTGTTTTAACCTGG+TGG | - | chr2_4:13360985-13361004 | Msa0316360:CDS | 45.0% |
| TTCCAAATACCAAGCTGCGA+AGG | - | chr2_4:13361164-13361183 | Msa0316360:intron | 45.0% | |
| TCCAAATACCAAGCTGCGAA+GGG | - | chr2_4:13361165-13361184 | Msa0316360:intron | 45.0% | |
| TGTCCAAGTCCACTTGACTT+AGG | - | chr2_4:13361282-13361301 | Msa0316360:intron | 45.0% | |
| ! | TAAGTTGGGAGCAGAGATTC+AGG | - | chr2_4:13361320-13361339 | Msa0316360:intron | 45.0% |
| !! | CAGGAGTACCGAGAAGTATA+TGG | - | chr2_4:13361339-13361358 | Msa0316360:intron | 45.0% |
| TGCAGATCCAGATCGTAGTT+TGG | - | chr2_4:13361410-13361429 | Msa0316360:CDS | 45.0% | |
| GCTCTAACCAAACTACGATC+TGG | + | chr2_4:13361420-13361439 | None:intergenic | 45.0% | |
| GTTTGGTTAGAGCAAGTAGG+GGG | - | chr2_4:13361427-13361446 | Msa0316360:CDS | 45.0% | |
| CTTCTGAGCCTTGGCATAAA+AGG | + | chr2_4:13361478-13361497 | None:intergenic | 45.0% | |
| AGCATAGATCTGACAGTCCT+TGG | + | chr2_4:13361525-13361544 | None:intergenic | 45.0% | |
| AAGGACTGTCAGATCTATGC+TGG | - | chr2_4:13361524-13361543 | Msa0316360:CDS | 45.0% | |
| CAGATCTATGCTGGCAAGAA+TGG | - | chr2_4:13361533-13361552 | Msa0316360:CDS | 45.0% | |
| CCTGAAAATGCAGCCTACTT+AGG | + | chr2_4:13361594-13361613 | None:intergenic | 45.0% | |
| ! | CCTAAGTAGGCTGCATTTTC+AGG | - | chr2_4:13361591-13361610 | Msa0316360:intron | 45.0% |
| TTGAATTTCTTGGGAACCCG+TGG | + | chr2_4:13361731-13361750 | None:intergenic | 45.0% | |
| ! | GTTATCGATTGGCAATTGGG+AGG | + | chr2_4:13361798-13361817 | None:intergenic | 45.0% |
| !! | GTGTGCCCCTTTTCTTGTTT+TGG | + | chr2_4:13362117-13362136 | None:intergenic | 45.0% |
| ! | AACAAGAAAAGGGGCACACA+CGG | - | chr2_4:13362118-13362137 | Msa0316360:intron | 45.0% |
| GAAGGGATTTCTTGGATACC+TGG | - | chr2_4:13362288-13362307 | Msa0316360:intron | 45.0% | |
| TGCATGCAAGGTTGTTTACC+AGG | + | chr2_4:13362309-13362328 | None:intergenic | 45.0% | |
| TACAGACAGTTGCAGAGAAG+TGG | + | chr2_4:13362354-13362373 | None:intergenic | 45.0% | |
| CAATTACACACCTGTAGGCT+AGG | - | chr2_4:13362479-13362498 | Msa0316360:intron | 45.0% | |
| AGAAGCAGCCACAAAGATCT+TGG | - | chr2_4:13362568-13362587 | Msa0316360:CDS | 45.0% | |
| TCTTTGGGCCAAGATCTTTG+TGG | + | chr2_4:13362579-13362598 | None:intergenic | 45.0% | |
| AAGGAGTGATGCTGAGGTTC+AGG | - | chr2_4:13359811-13359830 | Msa0316360:intron | 50.0% | |
| !! | CATTTGTTATCGGGCCACTC+CGG | - | chr2_4:13360049-13360068 | Msa0316360:intron | 50.0% |
| CAGTCTTGGACATGAAGGAG+GGG | - | chr2_4:13360088-13360107 | Msa0316360:intron | 50.0% | |
| AGTCTTGGACATGAAGGAGG+GGG | - | chr2_4:13360089-13360108 | Msa0316360:intron | 50.0% | |
| GCACCGGGCTAATACTGTTA+AGG | - | chr2_4:13360447-13360466 | Msa0316360:intron | 50.0% | |
| TCAGGACTGAGCTTCTCAAG+AGG | + | chr2_4:13360734-13360753 | None:intergenic | 50.0% | |
| TCAGTGCATAGCTGCTCATG+TGG | - | chr2_4:13360806-13360825 | Msa0316360:CDS | 50.0% | |
| TACTTGGGGCCTAAGTCAAG+TGG | + | chr2_4:13361294-13361313 | None:intergenic | 50.0% | |
| TTGTGATGGCTTCTGAGCCT+TGG | + | chr2_4:13361487-13361506 | None:intergenic | 50.0% | |
| ! | GGGTTGGGCCTGTTTCTTAA+TGG | + | chr2_4:13361907-13361926 | None:intergenic | 50.0% |
| GGGATCAACCAAATCCCAGT+AGG | - | chr2_4:13362017-13362036 | Msa0316360:intron | 50.0% | |
| ACGGACAGTCAACTGTGCTT+TGG | - | chr2_4:13362137-13362156 | Msa0316360:intron | 50.0% | |
| ATCTTTGTGGCTGCTTCTCC+TGG | + | chr2_4:13362566-13362585 | None:intergenic | 50.0% | |
| CTTGGCCCAAAGACCAGATA+TGG | - | chr2_4:13362586-13362605 | Msa0316360:CDS | 50.0% | |
| CATCAGGATCATGACCGGAG+TGG | + | chr2_4:13360066-13360085 | None:intergenic | 55.0% | |
| AGGGTGAGTGTGCCTCTCTA+TGG | - | chr2_4:13360299-13360318 | Msa0316360:intron | 55.0% | |
| ! | AGAGGAGGCGGTGCTTTTCA+CGG | + | chr2_4:13360716-13360735 | None:intergenic | 55.0% |
| CTGAGCTTCTCAAGAGGAGG+CGG | + | chr2_4:13360728-13360747 | None:intergenic | 55.0% | |
| GGACTGAGCTTCTCAAGAGG+AGG | + | chr2_4:13360731-13360750 | None:intergenic | 55.0% | |
| GCCCTTCGCAGCTTGGTATT+TGG | + | chr2_4:13361169-13361188 | None:intergenic | 55.0% | |
| ! | GGGCCTAAGTCAAGTGGACT+TGG | + | chr2_4:13361288-13361307 | None:intergenic | 55.0% |
| TCGATTGGCAATTGGGAGGG+AGG | + | chr2_4:13361794-13361813 | None:intergenic | 55.0% | |
| TACCAAGCTGCGAAGGGCAG+TGG | - | chr2_4:13361171-13361190 | Msa0316360:intron | 60.0% | |
| ATCCACTGCCCTTCGCAGCT+TGG | + | chr2_4:13361176-13361195 | None:intergenic | 60.0% | |
| ! | ACTTGGCTTTCTCAGCCGCC+CGG | + | chr2_4:13362265-13362284 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 13359680 | 13362633 | 13359680 | ID=Msa0316360;Name=Msa0316360 |
| chr2_4 | mRNA | 13359680 | 13362633 | 13359680 | ID=Msa0316360-mRNA-1;Parent=Msa0316360;Name=Msa0316360-mRNA-1;_AED=0.37;_eAED=0.43;_QI=0|0|0.2|0.8|0.5|0.6|5|0|271 |
| chr2_4 | exon | 13362481 | 13362633 | 13362481 | ID=Msa0316360-mRNA-1:exon:5069;Parent=Msa0316360-mRNA-1 |
| chr2_4 | exon | 13361388 | 13361590 | 13361388 | ID=Msa0316360-mRNA-1:exon:5068;Parent=Msa0316360-mRNA-1 |
| chr2_4 | exon | 13361242 | 13361255 | 13361242 | ID=Msa0316360-mRNA-1:exon:5067;Parent=Msa0316360-mRNA-1 |
| chr2_4 | exon | 13360759 | 13361066 | 13360759 | ID=Msa0316360-mRNA-1:exon:5066;Parent=Msa0316360-mRNA-1 |
| chr2_4 | exon | 13359680 | 13359817 | 13359680 | ID=Msa0316360-mRNA-1:exon:5065;Parent=Msa0316360-mRNA-1 |
| chr2_4 | CDS | 13362481 | 13362633 | 13362481 | ID=Msa0316360-mRNA-1:cds;Parent=Msa0316360-mRNA-1 |
| chr2_4 | CDS | 13361388 | 13361590 | 13361388 | ID=Msa0316360-mRNA-1:cds;Parent=Msa0316360-mRNA-1 |
| chr2_4 | CDS | 13361242 | 13361255 | 13361242 | ID=Msa0316360-mRNA-1:cds;Parent=Msa0316360-mRNA-1 |
| chr2_4 | CDS | 13360759 | 13361066 | 13360759 | ID=Msa0316360-mRNA-1:cds;Parent=Msa0316360-mRNA-1 |
| chr2_4 | CDS | 13359680 | 13359817 | 13359680 | ID=Msa0316360-mRNA-1:cds;Parent=Msa0316360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
