AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0319980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0319980 MtrunA17_Chr2g0294781 85.593 236 32 1 1 236 1 234 1.27e-113 325
Msa0319980 MtrunA17_Chr1g0192611 53.333 105 49 0 108 212 37 141 5.29e-36 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0319980 AT5G49350.2 52.756 127 60 0 105 231 99 225 2.15e-45 151
Msa0319980 AT5G49350.1 52.756 127 60 0 105 231 176 302 1.67e-44 151
Msa0319980 AT1G56320.1 47.959 98 51 0 109 206 39 136 5.92e-32 115

Find 74 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTATTGGTCTAATATTT+AGG 0.208380 2_4:+20098607 Msa0319980:CDS
GGTGGTGGCAGTGGTGGTTC+TGG 0.243485 2_4:+20097062 Msa0319980:CDS
GTTGGTGGTGCTGGTGGAAT+TGG 0.252592 2_4:+20097131 Msa0319980:CDS
ACATGGTAATCACCTCTTTC+AGG 0.254600 2_4:-20098312 None:intergenic
GGTGGGTTTGGTGGTGTTGG+TGG 0.261155 2_4:+20096993 Msa0319980:CDS
GTTGGTGGTGCTGGTGGGAT+TGG 0.269346 2_4:+20097086 Msa0319980:CDS
GGCGGTGGTGGAGCTGGTTT+TGG 0.292193 2_4:+20097023 Msa0319980:CDS
TTTGGTGGTGGTTCAGGGGT+TGG 0.302741 2_4:+20097041 Msa0319980:CDS
GGTGGTGTTGGTGGTGGTAA+TGG 0.305533 2_4:+20097002 Msa0319980:CDS
TCAGGGGTTGGTGGTGGCAG+TGG 0.306386 2_4:+20097053 Msa0319980:CDS
GGAGGTGGCGGTGGCGGCTC+TGG 0.311397 2_4:+20097107 Msa0319980:CDS
GGCTCTGGAGTTGGTGGTGC+TGG 0.312803 2_4:+20097122 Msa0319980:CDS
GGTGGTGGTTCAGGGGTTGG+TGG 0.322392 2_4:+20097044 Msa0319980:CDS
GGTTCTGGAGTTGGTGGTGC+TGG 0.324780 2_4:+20097077 Msa0319980:CDS
TGTTTCTTTGACATCCTCTA+TGG 0.326977 2_4:-20098265 None:intergenic
TTATATGGGGCATGCTCTAT+TGG 0.331460 2_4:+20098594 Msa0319980:CDS
GGTGGTGGGTTTGGTGGTGT+TGG 0.354845 2_4:+20096990 Msa0319980:CDS
GGTGGTTCAGGGGTTGGTGG+TGG 0.356427 2_4:+20097047 Msa0319980:CDS
GGTGGTGGCGGCGGTGGCAC+TGG 0.358090 2_4:+20097158 Msa0319980:CDS
GGGATTGGAGGTGGCGGTGG+CGG 0.360529 2_4:+20097101 Msa0319980:CDS
ATTCTAGCTGGATGTGGTTA+TGG 0.366099 2_4:+20098288 Msa0319980:CDS
GGCAGTGGTGGTTCTGGAGT+TGG 0.367104 2_4:+20097068 Msa0319980:CDS
GGGTTTGGTGGTGTTGGTGG+TGG 0.376233 2_4:+20096996 Msa0319980:CDS
GGAGGTGGTGGTGGCGGCGG+TGG 0.377175 2_4:+20097152 Msa0319980:CDS
GGTGGGATTGGAGGTGGCGG+TGG 0.378993 2_4:+20097098 Msa0319980:CDS
ATTGGAGGTGGTGGTGGCGG+CGG 0.395315 2_4:+20097149 Msa0319980:CDS
GGAATTGGAGGTGGTGGTGG+CGG 0.395491 2_4:+20097146 Msa0319980:CDS
GGTAATGGCGGTGGTGGAGC+TGG 0.396875 2_4:+20097017 Msa0319980:CDS
TTTATCATTGAAACAAAGTA+AGG 0.406771 2_4:-20097207 None:intergenic
TGGCATTTCGAATCAGTGTT+AGG 0.411565 2_4:+20096787 Msa0319980:CDS
GGCGGTGGCGGCTCTGGAGT+TGG 0.412983 2_4:+20097113 Msa0319980:CDS
GGTGGTGCTGGTGGGATTGG+AGG 0.416636 2_4:+20097089 Msa0319980:CDS
GGTGCTGGTGGGATTGGAGG+TGG 0.422521 2_4:+20097092 Msa0319980:CDS
CTGGAGTTGGTGGTGCTGGT+GGG 0.425166 2_4:+20097081 Msa0319980:CDS
GGGGTTGGTGGTGGCAGTGG+TGG 0.425409 2_4:+20097056 Msa0319980:CDS
GGTGGTGCTGGTGGAATTGG+AGG 0.426164 2_4:+20097134 Msa0319980:CDS
GGTGGTGGTAATGGCGGTGG+TGG 0.436300 2_4:+20097011 Msa0319980:CDS
TCTGGAGTTGGTGGTGCTGG+TGG 0.437509 2_4:+20097080 Msa0319980:CDS
GCTGGTGGAATTGGAGGTGG+TGG 0.442046 2_4:+20097140 Msa0319980:CDS
GGTGGAATTGGAGGTGGTGG+TGG 0.445881 2_4:+20097143 Msa0319980:CDS
ACTCAAATAGGTGGTGGGTT+TGG 0.449035 2_4:+20096981 Msa0319980:CDS
AGTGAAATGAATTAAAGTTA+TGG 0.451325 2_4:+20098708 Msa0319980:three_prime_UTR
CAAATAGGTGGTGGGTTTGG+TGG 0.456303 2_4:+20096984 Msa0319980:CDS
ATGCATGTCAGAGACCAATT+TGG 0.457136 2_4:+20098188 Msa0319980:CDS
GCTGGTGGGATTGGAGGTGG+CGG 0.466361 2_4:+20097095 Msa0319980:CDS
AATGCAGCCTAGGACCAAAT+TGG 0.473148 2_4:-20098202 None:intergenic
GGTGCTGGTGGAATTGGAGG+TGG 0.476086 2_4:+20097137 Msa0319980:CDS
TCAGAGACCAATTTGGTCCT+AGG 0.483050 2_4:+20098195 Msa0319980:CDS
GTCAAAGAAACAATTCTAGC+TGG 0.487115 2_4:+20098276 Msa0319980:CDS
GGTGGCGGCTCTGGAGTTGG+TGG 0.489033 2_4:+20097116 Msa0319980:CDS
TTCGAATCAGTGTTAGGCGT+TGG 0.509965 2_4:+20096793 Msa0319980:CDS
GGTGTTGGTGGTGGTAATGG+CGG 0.510948 2_4:+20097005 Msa0319980:CDS
GATGACGGTGATACTCAAAT+AGG 0.511109 2_4:+20096969 Msa0319980:CDS
GTTGGTGGTGGTAATGGCGG+TGG 0.511244 2_4:+20097008 Msa0319980:CDS
AACCATGCTGTGAAAGCTAC+AGG 0.525372 2_4:+20098545 Msa0319980:CDS
GGCCTGTAGCTTTCACAGCA+TGG 0.525622 2_4:-20098547 None:intergenic
TAATGTGGCTGAGCACATCC+AGG 0.528762 2_4:+20098514 Msa0319980:CDS
AGTGGTGGTTCTGGAGTTGG+TGG 0.535030 2_4:+20097071 Msa0319980:CDS
TCATACAGATTAACTGAGCA+TGG 0.550168 2_4:+20098117 Msa0319980:CDS
GTACTAATTTACTTATTCAG+TGG 0.551203 2_4:+20098677 Msa0319980:three_prime_UTR
TCTGGAGTTGGTGGTGCTGG+TGG 0.564243 2_4:+20097125 Msa0319980:CDS
GGTGATACTCAAATAGGTGG+TGG 0.568153 2_4:+20096975 Msa0319980:CDS
GAAACAATTCTAGCTGGATG+TGG 0.575381 2_4:+20098282 Msa0319980:CDS
GTGATACTCAAATAGGTGGT+GGG 0.597835 2_4:+20096976 Msa0319980:CDS
AAATGTTATCAATGCAGCCT+AGG 0.601717 2_4:-20098212 None:intergenic
AAAACTGATGCATTCTGTGA+AGG 0.606168 2_4:+20098162 Msa0319980:CDS
TGCCCCATATAATCAAAACT+AGG 0.626881 2_4:-20098583 None:intergenic
TGTGGTTATGGTCCTGAAAG+AGG 0.628743 2_4:+20098300 Msa0319980:CDS
CTACAATAGAGCAACCATAG+AGG 0.632569 2_4:+20098251 Msa0319980:CDS
AAACTAGGCTCATTAGAACA+TGG 0.643165 2_4:-20098568 None:intergenic
CTCTATTGTAGAATATGAAG+TGG 0.647078 2_4:-20098239 None:intergenic
AAATTGGTCTCTGACATGCA+TGG 0.692294 2_4:-20098186 None:intergenic
GGAGAGGCTGATGATGATGA+CGG 0.694940 2_4:+20096954 Msa0319980:intron
GACGGTGATACTCAAATAGG+TGG 0.710475 2_4:+20096972 Msa0319980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATCAAATTAAAATTTAATT+TGG + chr2_4:20096929-20096948 Msa0319980:intron 10.0%
!!! AAAAAGATATTTTATAATTC+CGG - chr2_4:20097400-20097419 None:intergenic 10.0%
!! GATCAAATTAAAATTTAATT+TGG + chr2_4:20096929-20096948 Msa0319980:intron 10.0%
!!! AAAAAGATATTTTATAATTC+CGG - chr2_4:20097400-20097419 None:intergenic 10.0%
!!! TTTTTGAATTTGAATAACTT+TGG + chr2_4:20096849-20096868 Msa0319980:CDS 15.0%
!!! AAATTAAAATTTAATTTGGC+AGG + chr2_4:20096933-20096952 Msa0319980:intron 15.0%
!! TCTTAAAAAAAGAAAAGAAA+TGG + chr2_4:20097308-20097327 Msa0319980:intron 15.0%
!!! TTTTTTTTATTCTGTTCATT+CGG + chr2_4:20097963-20097982 Msa0319980:intron 15.0%
!! TATAATATGCAATTAAAACA+TGG - chr2_4:20098332-20098351 None:intergenic 15.0%
!!! TTTTTGAATTTGAATAACTT+TGG + chr2_4:20096849-20096868 Msa0319980:CDS 15.0%
!!! AAATTAAAATTTAATTTGGC+AGG + chr2_4:20096933-20096952 Msa0319980:intron 15.0%
!! TCTTAAAAAAAGAAAAGAAA+TGG + chr2_4:20097308-20097327 Msa0319980:intron 15.0%
!!! TTTTTTTTATTCTGTTCATT+CGG + chr2_4:20097963-20097982 Msa0319980:intron 15.0%
!! TATAATATGCAATTAAAACA+TGG - chr2_4:20098332-20098351 None:intergenic 15.0%
!! TTTATCATTGAAACAAAGTA+AGG - chr2_4:20097210-20097229 None:intergenic 20.0%
!!! ATGAAACATAGATTAGTTAT+CGG + chr2_4:20097624-20097643 Msa0319980:intron 20.0%
!! TCATTTAATATATCACATCA+TGG + chr2_4:20097742-20097761 Msa0319980:intron 20.0%
!! AGTGAAATGAATTAAAGTTA+TGG + chr2_4:20098708-20098727 Msa0319980:three_prime_UTR 20.0%
!! TTTATCATTGAAACAAAGTA+AGG - chr2_4:20097210-20097229 None:intergenic 20.0%
!!! ATGAAACATAGATTAGTTAT+CGG + chr2_4:20097624-20097643 Msa0319980:intron 20.0%
!! TCATTTAATATATCACATCA+TGG + chr2_4:20097742-20097761 Msa0319980:intron 20.0%
!! AGTGAAATGAATTAAAGTTA+TGG + chr2_4:20098708-20098727 Msa0319980:three_prime_UTR 20.0%
! AAAAATAGAAACATCACTTG+AGG - chr2_4:20097249-20097268 None:intergenic 25.0%
! ATCAAGAACAATAGTCAAAT+TGG + chr2_4:20097275-20097294 Msa0319980:intron 25.0%
!!! TAGTCCCTCATTTTTTAAAT+TGG + chr2_4:20097358-20097377 Msa0319980:intron 25.0%
! TTGGCCAATTTAAAAAATGA+GGG - chr2_4:20097365-20097384 None:intergenic 25.0%
! ATTGGCCAATTTAAAAAATG+AGG - chr2_4:20097366-20097385 None:intergenic 25.0%
!! TTTTTAAATTGGCCAATAGA+TGG + chr2_4:20097369-20097388 Msa0319980:intron 25.0%
!! TTTTAAATTGGCCAATAGAT+GGG + chr2_4:20097370-20097389 Msa0319980:intron 25.0%
! TCTCTAACAATAAATGTCAT+CGG + chr2_4:20097765-20097784 Msa0319980:intron 25.0%
!! GTTGATTGTGTGTATTATTT+TGG + chr2_4:20098062-20098081 Msa0319980:intron 25.0%
! ACGAAACATACTATTCTTTA+TGG - chr2_4:20098368-20098387 None:intergenic 25.0%
! AAGTAACTATGTAACAATGT+CGG - chr2_4:20098457-20098476 None:intergenic 25.0%
! GTACTAATTTACTTATTCAG+TGG + chr2_4:20098677-20098696 Msa0319980:three_prime_UTR 25.0%
! AAAAATAGAAACATCACTTG+AGG - chr2_4:20097249-20097268 None:intergenic 25.0%
! ATCAAGAACAATAGTCAAAT+TGG + chr2_4:20097275-20097294 Msa0319980:intron 25.0%
!!! TAGTCCCTCATTTTTTAAAT+TGG + chr2_4:20097358-20097377 Msa0319980:intron 25.0%
! TTGGCCAATTTAAAAAATGA+GGG - chr2_4:20097365-20097384 None:intergenic 25.0%
! ATTGGCCAATTTAAAAAATG+AGG - chr2_4:20097366-20097385 None:intergenic 25.0%
!! TTTTTAAATTGGCCAATAGA+TGG + chr2_4:20097369-20097388 Msa0319980:intron 25.0%
!! TTTTAAATTGGCCAATAGAT+GGG + chr2_4:20097370-20097389 Msa0319980:intron 25.0%
! TCTCTAACAATAAATGTCAT+CGG + chr2_4:20097765-20097784 Msa0319980:intron 25.0%
!! GTTGATTGTGTGTATTATTT+TGG + chr2_4:20098062-20098081 Msa0319980:intron 25.0%
! ACGAAACATACTATTCTTTA+TGG - chr2_4:20098368-20098387 None:intergenic 25.0%
! AAGTAACTATGTAACAATGT+CGG - chr2_4:20098457-20098476 None:intergenic 25.0%
! GTACTAATTTACTTATTCAG+TGG + chr2_4:20098677-20098696 Msa0319980:three_prime_UTR 25.0%
!! AAAATTTAATTTGGCAGGAG+AGG + chr2_4:20096938-20096957 Msa0319980:intron 30.0%
!!! GCTTTTGAGATAATTTGAGA+AGG - chr2_4:20097188-20097207 None:intergenic 30.0%
GCAAAATAGTCATAACGAAA+AGG - chr2_4:20097531-20097550 None:intergenic 30.0%
TTGATGTACGATCAACATTT+CGG + chr2_4:20097705-20097724 Msa0319980:intron 30.0%
TAACAATAAATGTCATCGGA+TGG + chr2_4:20097769-20097788 Msa0319980:intron 30.0%
CATCATATTGAAGAGTGAAT+AGG - chr2_4:20097895-20097914 None:intergenic 30.0%
GATGCAACAATCGTATAATT+CGG + chr2_4:20097911-20097930 Msa0319980:intron 30.0%
ATGCAACAATCGTATAATTC+GGG + chr2_4:20097912-20097931 Msa0319980:intron 30.0%
CTCTATTGTAGAATATGAAG+TGG - chr2_4:20098242-20098261 None:intergenic 30.0%
!!! ATGTGAATACTTTTTCATGC+AGG + chr2_4:20098485-20098504 Msa0319980:intron 30.0%
!! TCATGCAGGAAATTTTAATG+TGG + chr2_4:20098499-20098518 Msa0319980:intron 30.0%
!!! TGAGCCTAGTTTTGATTATA+TGG + chr2_4:20098579-20098598 Msa0319980:CDS 30.0%
!!! GAGCCTAGTTTTGATTATAT+GGG + chr2_4:20098580-20098599 Msa0319980:CDS 30.0%
!!! AGCCTAGTTTTGATTATATG+GGG + chr2_4:20098581-20098600 Msa0319980:CDS 30.0%
! GCTCTATTGGTCTAATATTT+AGG + chr2_4:20098607-20098626 Msa0319980:CDS 30.0%
!! AAAATTTAATTTGGCAGGAG+AGG + chr2_4:20096938-20096957 Msa0319980:intron 30.0%
!!! GCTTTTGAGATAATTTGAGA+AGG - chr2_4:20097188-20097207 None:intergenic 30.0%
GCAAAATAGTCATAACGAAA+AGG - chr2_4:20097531-20097550 None:intergenic 30.0%
TTGATGTACGATCAACATTT+CGG + chr2_4:20097705-20097724 Msa0319980:intron 30.0%
TAACAATAAATGTCATCGGA+TGG + chr2_4:20097769-20097788 Msa0319980:intron 30.0%
CATCATATTGAAGAGTGAAT+AGG - chr2_4:20097895-20097914 None:intergenic 30.0%
GATGCAACAATCGTATAATT+CGG + chr2_4:20097911-20097930 Msa0319980:intron 30.0%
ATGCAACAATCGTATAATTC+GGG + chr2_4:20097912-20097931 Msa0319980:intron 30.0%
CTCTATTGTAGAATATGAAG+TGG - chr2_4:20098242-20098261 None:intergenic 30.0%
!!! ATGTGAATACTTTTTCATGC+AGG + chr2_4:20098485-20098504 Msa0319980:intron 30.0%
!! TCATGCAGGAAATTTTAATG+TGG + chr2_4:20098499-20098518 Msa0319980:intron 30.0%
!!! TGAGCCTAGTTTTGATTATA+TGG + chr2_4:20098579-20098598 Msa0319980:CDS 30.0%
!!! GAGCCTAGTTTTGATTATAT+GGG + chr2_4:20098580-20098599 Msa0319980:CDS 30.0%
!!! AGCCTAGTTTTGATTATATG+GGG + chr2_4:20098581-20098600 Msa0319980:CDS 30.0%
! GCTCTATTGGTCTAATATTT+AGG + chr2_4:20098607-20098626 Msa0319980:CDS 30.0%
GTTCTCGAAATTGTAAGCAT+CGG - chr2_4:20097865-20097884 None:intergenic 35.0%
TTTATTCTGTTCATTCGGAC+CGG + chr2_4:20097968-20097987 Msa0319980:intron 35.0%
TCATACAGATTAACTGAGCA+TGG + chr2_4:20098117-20098136 Msa0319980:CDS 35.0%
AAAACTGATGCATTCTGTGA+AGG + chr2_4:20098162-20098181 Msa0319980:CDS 35.0%
AAATGTTATCAATGCAGCCT+AGG - chr2_4:20098215-20098234 None:intergenic 35.0%
TGTTTCTTTGACATCCTCTA+TGG - chr2_4:20098268-20098287 None:intergenic 35.0%
GTCAAAGAAACAATTCTAGC+TGG + chr2_4:20098276-20098295 Msa0319980:CDS 35.0%
AAACTAGGCTCATTAGAACA+TGG - chr2_4:20098571-20098590 None:intergenic 35.0%
TGCCCCATATAATCAAAACT+AGG - chr2_4:20098586-20098605 None:intergenic 35.0%
GTTCTCGAAATTGTAAGCAT+CGG - chr2_4:20097865-20097884 None:intergenic 35.0%
TTTATTCTGTTCATTCGGAC+CGG + chr2_4:20097968-20097987 Msa0319980:intron 35.0%
TCATACAGATTAACTGAGCA+TGG + chr2_4:20098117-20098136 Msa0319980:CDS 35.0%
AAAACTGATGCATTCTGTGA+AGG + chr2_4:20098162-20098181 Msa0319980:CDS 35.0%
AAATGTTATCAATGCAGCCT+AGG - chr2_4:20098215-20098234 None:intergenic 35.0%
TGTTTCTTTGACATCCTCTA+TGG - chr2_4:20098268-20098287 None:intergenic 35.0%
GTCAAAGAAACAATTCTAGC+TGG + chr2_4:20098276-20098295 Msa0319980:CDS 35.0%
AAACTAGGCTCATTAGAACA+TGG - chr2_4:20098571-20098590 None:intergenic 35.0%
TGCCCCATATAATCAAAACT+AGG - chr2_4:20098586-20098605 None:intergenic 35.0%
TGGCATTTCGAATCAGTGTT+AGG + chr2_4:20096787-20096806 Msa0319980:CDS 40.0%
! GATGACGGTGATACTCAAAT+AGG + chr2_4:20096969-20096988 Msa0319980:CDS 40.0%
GTGATACTCAAATAGGTGGT+GGG + chr2_4:20096976-20096995 Msa0319980:CDS 40.0%
CTAGAGCTGTCAAAATTGAC+CGG - chr2_4:20097990-20098009 None:intergenic 40.0%
! CAGCTCTAGTTATGATAGCT+AGG + chr2_4:20098001-20098020 Msa0319980:intron 40.0%
GGAATAGTGTACTCTATGCA+AGG + chr2_4:20098022-20098041 Msa0319980:intron 40.0%
! AATGCATCAGTTTTCTCTGG+AGG - chr2_4:20098156-20098175 None:intergenic 40.0%
! CAGAATGCATCAGTTTTCTC+TGG - chr2_4:20098159-20098178 None:intergenic 40.0%
! AAATTGGTCTCTGACATGCA+TGG - chr2_4:20098189-20098208 None:intergenic 40.0%
ATGCATGTCAGAGACCAATT+TGG + chr2_4:20098188-20098207 Msa0319980:CDS 40.0%
CTACAATAGAGCAACCATAG+AGG + chr2_4:20098251-20098270 Msa0319980:CDS 40.0%
! GAAACAATTCTAGCTGGATG+TGG + chr2_4:20098282-20098301 Msa0319980:CDS 40.0%
! ATTCTAGCTGGATGTGGTTA+TGG + chr2_4:20098288-20098307 Msa0319980:CDS 40.0%
ACATGGTAATCACCTCTTTC+AGG - chr2_4:20098315-20098334 None:intergenic 40.0%
TTATATGGGGCATGCTCTAT+TGG + chr2_4:20098594-20098613 Msa0319980:CDS 40.0%
TGGCATTTCGAATCAGTGTT+AGG + chr2_4:20096787-20096806 Msa0319980:CDS 40.0%
! GATGACGGTGATACTCAAAT+AGG + chr2_4:20096969-20096988 Msa0319980:CDS 40.0%
GTGATACTCAAATAGGTGGT+GGG + chr2_4:20096976-20096995 Msa0319980:CDS 40.0%
CTAGAGCTGTCAAAATTGAC+CGG - chr2_4:20097990-20098009 None:intergenic 40.0%
! CAGCTCTAGTTATGATAGCT+AGG + chr2_4:20098001-20098020 Msa0319980:intron 40.0%
GGAATAGTGTACTCTATGCA+AGG + chr2_4:20098022-20098041 Msa0319980:intron 40.0%
! AATGCATCAGTTTTCTCTGG+AGG - chr2_4:20098156-20098175 None:intergenic 40.0%
! CAGAATGCATCAGTTTTCTC+TGG - chr2_4:20098159-20098178 None:intergenic 40.0%
! AAATTGGTCTCTGACATGCA+TGG - chr2_4:20098189-20098208 None:intergenic 40.0%
ATGCATGTCAGAGACCAATT+TGG + chr2_4:20098188-20098207 Msa0319980:CDS 40.0%
CTACAATAGAGCAACCATAG+AGG + chr2_4:20098251-20098270 Msa0319980:CDS 40.0%
! GAAACAATTCTAGCTGGATG+TGG + chr2_4:20098282-20098301 Msa0319980:CDS 40.0%
! ATTCTAGCTGGATGTGGTTA+TGG + chr2_4:20098288-20098307 Msa0319980:CDS 40.0%
ACATGGTAATCACCTCTTTC+AGG - chr2_4:20098315-20098334 None:intergenic 40.0%
TTATATGGGGCATGCTCTAT+TGG + chr2_4:20098594-20098613 Msa0319980:CDS 40.0%
TTCGAATCAGTGTTAGGCGT+TGG + chr2_4:20096793-20096812 Msa0319980:CDS 45.0%
GACGGTGATACTCAAATAGG+TGG + chr2_4:20096972-20096991 Msa0319980:CDS 45.0%
GGTGATACTCAAATAGGTGG+TGG + chr2_4:20096975-20096994 Msa0319980:CDS 45.0%
!! ACTCAAATAGGTGGTGGGTT+TGG + chr2_4:20096981-20097000 Msa0319980:CDS 45.0%
ATTCCGGACTTCCCATCTAT+TGG - chr2_4:20097384-20097403 None:intergenic 45.0%
TCAGAGACCAATTTGGTCCT+AGG + chr2_4:20098195-20098214 Msa0319980:CDS 45.0%
AATGCAGCCTAGGACCAAAT+TGG - chr2_4:20098205-20098224 None:intergenic 45.0%
TGTGGTTATGGTCCTGAAAG+AGG + chr2_4:20098300-20098319 Msa0319980:CDS 45.0%
GTTCGTGTCAATGTCGTGTT+TGG - chr2_4:20098424-20098443 None:intergenic 45.0%
! CAGCATGGTTTTCTTCATCC+TGG - chr2_4:20098535-20098554 None:intergenic 45.0%
AACCATGCTGTGAAAGCTAC+AGG + chr2_4:20098545-20098564 Msa0319980:CDS 45.0%
TTCGAATCAGTGTTAGGCGT+TGG + chr2_4:20096793-20096812 Msa0319980:CDS 45.0%
GACGGTGATACTCAAATAGG+TGG + chr2_4:20096972-20096991 Msa0319980:CDS 45.0%
GGTGATACTCAAATAGGTGG+TGG + chr2_4:20096975-20096994 Msa0319980:CDS 45.0%
!! ACTCAAATAGGTGGTGGGTT+TGG + chr2_4:20096981-20097000 Msa0319980:CDS 45.0%
ATTCCGGACTTCCCATCTAT+TGG - chr2_4:20097384-20097403 None:intergenic 45.0%
TCAGAGACCAATTTGGTCCT+AGG + chr2_4:20098195-20098214 Msa0319980:CDS 45.0%
AATGCAGCCTAGGACCAAAT+TGG - chr2_4:20098205-20098224 None:intergenic 45.0%
TGTGGTTATGGTCCTGAAAG+AGG + chr2_4:20098300-20098319 Msa0319980:CDS 45.0%
GTTCGTGTCAATGTCGTGTT+TGG - chr2_4:20098424-20098443 None:intergenic 45.0%
! CAGCATGGTTTTCTTCATCC+TGG - chr2_4:20098535-20098554 None:intergenic 45.0%
AACCATGCTGTGAAAGCTAC+AGG + chr2_4:20098545-20098564 Msa0319980:CDS 45.0%
! GGAGAGGCTGATGATGATGA+CGG + chr2_4:20096954-20096973 Msa0319980:intron 50.0%
!! CAAATAGGTGGTGGGTTTGG+TGG + chr2_4:20096984-20097003 Msa0319980:CDS 50.0%
!!! CTGGTTTTGGTGGTGGTTCA+GGG + chr2_4:20097036-20097055 Msa0319980:CDS 50.0%
!!! TGGTTTTGGTGGTGGTTCAG+GGG + chr2_4:20097037-20097056 Msa0319980:CDS 50.0%
TGGCCAATAGATGGGAAGTC+CGG + chr2_4:20097378-20097397 Msa0319980:intron 50.0%
TAATGTGGCTGAGCACATCC+AGG + chr2_4:20098514-20098533 Msa0319980:CDS 50.0%
! GGAGAGGCTGATGATGATGA+CGG + chr2_4:20096954-20096973 Msa0319980:intron 50.0%
!! CAAATAGGTGGTGGGTTTGG+TGG + chr2_4:20096984-20097003 Msa0319980:CDS 50.0%
!!! CTGGTTTTGGTGGTGGTTCA+GGG + chr2_4:20097036-20097055 Msa0319980:CDS 50.0%
!!! TGGTTTTGGTGGTGGTTCAG+GGG + chr2_4:20097037-20097056 Msa0319980:CDS 50.0%
TGGCCAATAGATGGGAAGTC+CGG + chr2_4:20097378-20097397 Msa0319980:intron 50.0%
TAATGTGGCTGAGCACATCC+AGG + chr2_4:20098514-20098533 Msa0319980:CDS 50.0%
!! GGTGGTGTTGGTGGTGGTAA+TGG + chr2_4:20097002-20097021 Msa0319980:CDS 55.0%
!! GGTGTTGGTGGTGGTAATGG+CGG + chr2_4:20097005-20097024 Msa0319980:CDS 55.0%
!!! GCTGGTTTTGGTGGTGGTTC+AGG + chr2_4:20097035-20097054 Msa0319980:CDS 55.0%
!! TTTGGTGGTGGTTCAGGGGT+TGG + chr2_4:20097041-20097060 Msa0319980:CDS 55.0%
!! AGTGGTGGTTCTGGAGTTGG+TGG + chr2_4:20097071-20097090 Msa0319980:CDS 55.0%
!! GTTGGTGGTGCTGGTGGAAT+TGG + chr2_4:20097131-20097150 Msa0319980:CDS 55.0%
GGCCTGTAGCTTTCACAGCA+TGG - chr2_4:20098550-20098569 None:intergenic 55.0%
!! GGTGGTGTTGGTGGTGGTAA+TGG + chr2_4:20097002-20097021 Msa0319980:CDS 55.0%
!! GGTGTTGGTGGTGGTAATGG+CGG + chr2_4:20097005-20097024 Msa0319980:CDS 55.0%
!!! GCTGGTTTTGGTGGTGGTTC+AGG + chr2_4:20097035-20097054 Msa0319980:CDS 55.0%
!! TTTGGTGGTGGTTCAGGGGT+TGG + chr2_4:20097041-20097060 Msa0319980:CDS 55.0%
!! AGTGGTGGTTCTGGAGTTGG+TGG + chr2_4:20097071-20097090 Msa0319980:CDS 55.0%
!! GTTGGTGGTGCTGGTGGAAT+TGG + chr2_4:20097131-20097150 Msa0319980:CDS 55.0%
GGCCTGTAGCTTTCACAGCA+TGG - chr2_4:20098550-20098569 None:intergenic 55.0%
!! GGTGGTGGGTTTGGTGGTGT+TGG + chr2_4:20096990-20097009 Msa0319980:CDS 60.0%
!! GGTGGGTTTGGTGGTGTTGG+TGG + chr2_4:20096993-20097012 Msa0319980:CDS 60.0%
!! GGGTTTGGTGGTGTTGGTGG+TGG + chr2_4:20096996-20097015 Msa0319980:CDS 60.0%
!! GTTGGTGGTGGTAATGGCGG+TGG + chr2_4:20097008-20097027 Msa0319980:CDS 60.0%
!!! GGTGGTGGAGCTGGTTTTGG+TGG + chr2_4:20097026-20097045 Msa0319980:CDS 60.0%
!!! GGTGGAGCTGGTTTTGGTGG+TGG + chr2_4:20097029-20097048 Msa0319980:CDS 60.0%
!! GGCAGTGGTGGTTCTGGAGT+TGG + chr2_4:20097068-20097087 Msa0319980:CDS 60.0%
!! GGTTCTGGAGTTGGTGGTGC+TGG + chr2_4:20097077-20097096 Msa0319980:CDS 60.0%
!! TCTGGAGTTGGTGGTGCTGG+TGG + chr2_4:20097080-20097099 Msa0319980:CDS 60.0%
!! CTGGAGTTGGTGGTGCTGGT+GGG + chr2_4:20097081-20097100 Msa0319980:CDS 60.0%
!! GTTGGTGGTGCTGGTGGGAT+TGG + chr2_4:20097086-20097105 Msa0319980:CDS 60.0%
!! TCTGGAGTTGGTGGTGCTGG+TGG + chr2_4:20097080-20097099 Msa0319980:CDS 60.0%
!! GGTGGTGCTGGTGGAATTGG+AGG + chr2_4:20097134-20097153 Msa0319980:CDS 60.0%
!! GGTGCTGGTGGAATTGGAGG+TGG + chr2_4:20097137-20097156 Msa0319980:CDS 60.0%
GCTGGTGGAATTGGAGGTGG+TGG + chr2_4:20097140-20097159 Msa0319980:CDS 60.0%
! GGTGGAATTGGAGGTGGTGG+TGG + chr2_4:20097143-20097162 Msa0319980:CDS 60.0%
!! GGAATTGGAGGTGGTGGTGG+CGG + chr2_4:20097146-20097165 Msa0319980:CDS 60.0%
!! GGTGGTGGGTTTGGTGGTGT+TGG + chr2_4:20096990-20097009 Msa0319980:CDS 60.0%
!! GGTGGGTTTGGTGGTGTTGG+TGG + chr2_4:20096993-20097012 Msa0319980:CDS 60.0%
!! GGGTTTGGTGGTGTTGGTGG+TGG + chr2_4:20096996-20097015 Msa0319980:CDS 60.0%
!! GTTGGTGGTGGTAATGGCGG+TGG + chr2_4:20097008-20097027 Msa0319980:CDS 60.0%
!!! GGTGGTGGAGCTGGTTTTGG+TGG + chr2_4:20097026-20097045 Msa0319980:CDS 60.0%
!!! GGTGGAGCTGGTTTTGGTGG+TGG + chr2_4:20097029-20097048 Msa0319980:CDS 60.0%
!! GGCAGTGGTGGTTCTGGAGT+TGG + chr2_4:20097068-20097087 Msa0319980:CDS 60.0%
!! GGTTCTGGAGTTGGTGGTGC+TGG + chr2_4:20097077-20097096 Msa0319980:CDS 60.0%
!! TCTGGAGTTGGTGGTGCTGG+TGG + chr2_4:20097080-20097099 Msa0319980:CDS 60.0%
!! CTGGAGTTGGTGGTGCTGGT+GGG + chr2_4:20097081-20097100 Msa0319980:CDS 60.0%
!! GTTGGTGGTGCTGGTGGGAT+TGG + chr2_4:20097086-20097105 Msa0319980:CDS 60.0%
!! TCTGGAGTTGGTGGTGCTGG+TGG + chr2_4:20097080-20097099 Msa0319980:CDS 60.0%
!! GGTGGTGCTGGTGGAATTGG+AGG + chr2_4:20097134-20097153 Msa0319980:CDS 60.0%
!! GGTGCTGGTGGAATTGGAGG+TGG + chr2_4:20097137-20097156 Msa0319980:CDS 60.0%
GCTGGTGGAATTGGAGGTGG+TGG + chr2_4:20097140-20097159 Msa0319980:CDS 60.0%
! GGTGGAATTGGAGGTGGTGG+TGG + chr2_4:20097143-20097162 Msa0319980:CDS 60.0%
!! GGAATTGGAGGTGGTGGTGG+CGG + chr2_4:20097146-20097165 Msa0319980:CDS 60.0%
!! GGTGGTGGTAATGGCGGTGG+TGG + chr2_4:20097011-20097030 Msa0319980:CDS 65.0%
!! GGTAATGGCGGTGGTGGAGC+TGG + chr2_4:20097017-20097036 Msa0319980:CDS 65.0%
!!! GGCGGTGGTGGAGCTGGTTT+TGG + chr2_4:20097023-20097042 Msa0319980:CDS 65.0%
! GGTGGTGGTTCAGGGGTTGG+TGG + chr2_4:20097044-20097063 Msa0319980:CDS 65.0%
!! GGTGGTTCAGGGGTTGGTGG+TGG + chr2_4:20097047-20097066 Msa0319980:CDS 65.0%
!! TCAGGGGTTGGTGGTGGCAG+TGG + chr2_4:20097053-20097072 Msa0319980:CDS 65.0%
! GGTGGTGGCAGTGGTGGTTC+TGG + chr2_4:20097062-20097081 Msa0319980:CDS 65.0%
!! GGTGGTGCTGGTGGGATTGG+AGG + chr2_4:20097089-20097108 Msa0319980:CDS 65.0%
!! GGTGCTGGTGGGATTGGAGG+TGG + chr2_4:20097092-20097111 Msa0319980:CDS 65.0%
GCTGGTGGGATTGGAGGTGG+CGG + chr2_4:20097095-20097114 Msa0319980:CDS 65.0%
!! GGCTCTGGAGTTGGTGGTGC+TGG + chr2_4:20097122-20097141 Msa0319980:CDS 65.0%
!! ATTGGAGGTGGTGGTGGCGG+CGG + chr2_4:20097149-20097168 Msa0319980:CDS 65.0%
!! GGTGGTGGTAATGGCGGTGG+TGG + chr2_4:20097011-20097030 Msa0319980:CDS 65.0%
!! GGTAATGGCGGTGGTGGAGC+TGG + chr2_4:20097017-20097036 Msa0319980:CDS 65.0%
!!! GGCGGTGGTGGAGCTGGTTT+TGG + chr2_4:20097023-20097042 Msa0319980:CDS 65.0%
! GGTGGTGGTTCAGGGGTTGG+TGG + chr2_4:20097044-20097063 Msa0319980:CDS 65.0%
!! GGTGGTTCAGGGGTTGGTGG+TGG + chr2_4:20097047-20097066 Msa0319980:CDS 65.0%
!! TCAGGGGTTGGTGGTGGCAG+TGG + chr2_4:20097053-20097072 Msa0319980:CDS 65.0%
! GGTGGTGGCAGTGGTGGTTC+TGG + chr2_4:20097062-20097081 Msa0319980:CDS 65.0%
!! GGTGGTGCTGGTGGGATTGG+AGG + chr2_4:20097089-20097108 Msa0319980:CDS 65.0%
!! GGTGCTGGTGGGATTGGAGG+TGG + chr2_4:20097092-20097111 Msa0319980:CDS 65.0%
GCTGGTGGGATTGGAGGTGG+CGG + chr2_4:20097095-20097114 Msa0319980:CDS 65.0%
!! GGCTCTGGAGTTGGTGGTGC+TGG + chr2_4:20097122-20097141 Msa0319980:CDS 65.0%
!! ATTGGAGGTGGTGGTGGCGG+CGG + chr2_4:20097149-20097168 Msa0319980:CDS 65.0%
!! GGGGTTGGTGGTGGCAGTGG+TGG + chr2_4:20097056-20097075 Msa0319980:CDS 70.0%
! GGTGGGATTGGAGGTGGCGG+TGG + chr2_4:20097098-20097117 Msa0319980:CDS 70.0%
! GGGATTGGAGGTGGCGGTGG+CGG + chr2_4:20097101-20097120 Msa0319980:CDS 70.0%
!! GGTGGCGGCTCTGGAGTTGG+TGG + chr2_4:20097116-20097135 Msa0319980:CDS 70.0%
!! GGGGTTGGTGGTGGCAGTGG+TGG + chr2_4:20097056-20097075 Msa0319980:CDS 70.0%
! GGTGGGATTGGAGGTGGCGG+TGG + chr2_4:20097098-20097117 Msa0319980:CDS 70.0%
! GGGATTGGAGGTGGCGGTGG+CGG + chr2_4:20097101-20097120 Msa0319980:CDS 70.0%
!! GGTGGCGGCTCTGGAGTTGG+TGG + chr2_4:20097116-20097135 Msa0319980:CDS 70.0%
!! GGCGGTGGCGGCTCTGGAGT+TGG + chr2_4:20097113-20097132 Msa0319980:CDS 75.0%
!! GGCGGTGGCGGCTCTGGAGT+TGG + chr2_4:20097113-20097132 Msa0319980:CDS 75.0%
!! GGAGGTGGCGGTGGCGGCTC+TGG + chr2_4:20097107-20097126 Msa0319980:CDS 80.0%
!!! GGAGGTGGTGGTGGCGGCGG+TGG + chr2_4:20097152-20097171 Msa0319980:CDS 80.0%
!!! GGTGGTGGCGGCGGTGGCAC+TGG + chr2_4:20097158-20097177 Msa0319980:CDS 80.0%
!! GGAGGTGGCGGTGGCGGCTC+TGG + chr2_4:20097107-20097126 Msa0319980:CDS 80.0%
!!! GGAGGTGGTGGTGGCGGCGG+TGG + chr2_4:20097152-20097171 Msa0319980:CDS 80.0%
!!! GGTGGTGGCGGCGGTGGCAC+TGG + chr2_4:20097158-20097177 Msa0319980:CDS 80.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 20096786 20098776 20096786 ID=Msa0319980;Name=Msa0319980
chr2_4 mRNA 20096786 20098776 20096786 ID=Msa0319980-mRNA-1;Parent=Msa0319980;Name=Msa0319980-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.66|0.25|1|1|1|4|148|236
chr2_4 exon 20096786 20096870 20096786 ID=Msa0319980-mRNA-1:exon:7424;Parent=Msa0319980-mRNA-1
chr2_4 exon 20096955 20097232 20096955 ID=Msa0319980-mRNA-1:exon:7425;Parent=Msa0319980-mRNA-1
chr2_4 exon 20098096 20098321 20098096 ID=Msa0319980-mRNA-1:exon:7426;Parent=Msa0319980-mRNA-1
chr2_4 exon 20098507 20098776 20098507 ID=Msa0319980-mRNA-1:exon:7427;Parent=Msa0319980-mRNA-1
chr2_4 CDS 20096786 20096870 20096786 ID=Msa0319980-mRNA-1:cds;Parent=Msa0319980-mRNA-1
chr2_4 CDS 20096955 20097232 20096955 ID=Msa0319980-mRNA-1:cds;Parent=Msa0319980-mRNA-1
chr2_4 CDS 20098096 20098321 20098096 ID=Msa0319980-mRNA-1:cds;Parent=Msa0319980-mRNA-1
chr2_4 CDS 20098507 20098628 20098507 ID=Msa0319980-mRNA-1:cds;Parent=Msa0319980-mRNA-1
chr2_4 three_prime_UTR 20098629 20098776 20098629 ID=Msa0319980-mRNA-1:three_prime_utr;Parent=Msa0319980-mRNA-1
Gene Sequence

>Msa0319980

ATGGCATTTCGAATCAGTGTTAGGCGTTGGATTTTAGTCTTTGCTCTACTTTATGTTTGTTTATTTTTGAATTTGAATAACTTTGGAGAGGCTGATGATGATGACGGTGATACTCAAATAGGTGGTGGGTTTGGTGGTGTTGGTGGTGGTAATGGCGGTGGTGGAGCTGGTTTTGGTGGTGGTTCAGGGGTTGGTGGTGGCAGTGGTGGTTCTGGAGTTGGTGGTGCTGGTGGGATTGGAGGTGGCGGTGGCGGCTCTGGAGTTGGTGGTGCTGGTGGAATTGGAGGTGGTGGTGGCGGCGGTGGCACTGGTGATCCTTCTCAAATTATCTCAAAAGCCTTACTTTGTTTCAATGATAAATATATTTATCAAAGCTGTGAAGAGTCATACAGATTAACTGAGCATGGAAATTTAGATGTTCCTCCAGAGAAAACTGATGCATTCTGTGAAGGACCATGCATGTCAGAGACCAATTTGGTCCTAGGCTGCATTGATAACATTTTCAGCCACTTCATATTCTACAATAGAGCAACCATAGAGGATGTCAAAGAAACAATTCTAGCTGGATGTGGTTATGGTCCTGAAAGAGGAAATTTTAATGTGGCTGAGCACATCCAGGATGAAGAAAACCATGCTGTGAAAGCTACAGGCCATGTTCTAATGAGCCTAGTTTTGATTATATGGGGCATGCTCTATTGGTCTAATATTTAG

Protein sequence

>Msa0319980

MAFRISVRRWILVFALLYVCLFLNLNNFGEADDDDGDTQIGGGFGGVGGGNGGGGAGFGGGSGVGGGSGGSGVGGAGGIGGGGGGSGVGGAGGIGGGGGGGGTGDPSQIISKALLCFNDKYIYQSCEESYRLTEHGNLDVPPEKTDAFCEGPCMSETNLVLGCIDNIFSHFIFYNRATIEDVKETILAGCGYGPERGNFNVAEHIQDEENHAVKATGHVLMSLVLIIWGMLYWSNI*