AlfalfaGEDB | Msa0321680

M. sativa cultivar zhongmu-4 / Msa0321680

KEGG: K02937
GO: GO:0000463 GO:0000470 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030312 GO:0031090 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF08079.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0321680	ACJ84153.1	89.231	65	7	0	1	65	1	65	1.84e-28	113

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0321680	sp\|Q9LHP1\|RL74_ARATH	57.143	77	33	0	1	77	1	77	2.94e-19	82.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0321680	Msa0925250	0.802424	5.646657e-49	-8.615850e-47
Msa0321680	Msa0925270	0.802283	6.037236e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0321680	MtrunA17_Chr2g0298841	89.231	65	7	1	65	1	65	1.91e-32	113
Msa0321680	MtrunA17_Chr1g0155331	75.325	77	19	1	77	1	77	2.61e-31	110
Msa0321680	MtrunA17_Chr4g0002321	64.516	62	22	4	65	3	64	5.56e-21	83.6

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0321680	AT3G13580.5	57.143	77	33	1	77	1	77	2.99e-20	82.0
Msa0321680	AT3G13580.4	57.143	77	33	1	77	1	77	2.99e-20	82.0
Msa0321680	AT3G13580.2	57.143	77	33	1	77	1	77	2.99e-20	82.0
Msa0321680	AT3G13580.3	57.143	77	33	1	77	1	77	2.99e-20	82.0
Msa0321680	AT3G13580.1	57.143	77	33	1	77	1	77	2.99e-20	82.0
Msa0321680	AT3G13580.7	57.143	77	33	1	77	1	77	2.99e-20	82.0
Msa0321680	AT3G13580.8	57.143	77	33	1	77	1	77	2.99e-20	82.0
Msa0321680	AT3G13580.6	57.143	77	33	1	77	1	77	2.99e-20	82.0
Msa0321680	AT3G13580.9	57.143	77	33	1	77	1	77	2.99e-20	82.0
Msa0321680	AT2G01250.2	56.164	73	32	5	77	3	75	4.51e-18	75.1

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Find 23 sgRNAs with CRISPR-Local

Find 589 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGAAAAGGAATGTGGAA+TGG	0.519127	2_4:+23205453	Msa0321680:CDS
AAGACAAGAATATACCCTTC+TGG	0.402842	2_4:+23210598	Msa0321680:CDS
AAGGAATGTGGAATGGGCAT+TGG	0.575475	2_4:+23205460	Msa0321680:CDS
ACAGAAAAGGAATGTGGAAT+GGG	0.495624	2_4:+23205454	Msa0321680:CDS
ACAGGATCCAGCGCTTCTGC+AGG	0.446672	2_4:+23207850	Msa0321680:intron
AGAAGAAGAGAGCTGAAACC+AGG	0.494410	2_4:+23205510	Msa0321680:CDS
AGGGACGTCCACACGCTTCC+TGG	0.419463	2_4:+23207870	Msa0321680:CDS
ATGGGCATTGGTGAAGAAAC+AGG	0.439903	2_4:+23205472	Msa0321680:CDS
CAAAACAGATTCAGGAACAA+CGG	0.575093	2_4:-23205426	None:intergenic
CAGGATCCAGCGCTTCTGCA+GGG	0.593569	2_4:+23207851	Msa0321680:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTTCTTCAAAACAGATTC+AGG	-	chr2_4:23205437-23205456	None:intergenic	30.0%
GAAAGCAAAATTAAACCCAT+CGG	+	chr2_4:23205801-23205820	Msa0321680:intron	30.0%
AAAGCAAAATTAAACCCATC+GGG	+	chr2_4:23205802-23205821	Msa0321680:intron	30.0%
TAACATATGATTCTCTTCCT+CGG	+	chr2_4:23205894-23205913	Msa0321680:intron	30.0%
AGCGATGAAAAATTCTCTTA+AGG	-	chr2_4:23206055-23206074	None:intergenic	30.0%
ATGATTGGAATAATTGTTGG+GGG	-	chr2_4:23206560-23206579	None:intergenic	30.0%
GATGATTGGAATAATTGTTG+GGG	-	chr2_4:23206561-23206580	None:intergenic	30.0%
GGATGATTGGAATAATTGTT+GGG	-	chr2_4:23206562-23206581	None:intergenic	30.0%
TATTCCAATCATCCGAAATA+AGG	+	chr2_4:23206568-23206587	Msa0321680:intron	30.0%
ATTCCAATCATCCGAAATAA+GGG	+	chr2_4:23206569-23206588	Msa0321680:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	23205404	23210639	23205404	ID=Msa0321680;Name=Msa0321680
chr2_4	mRNA	23205404	23210639	23205404	ID=Msa0321680-mRNA-1;Parent=Msa0321680;Name=Msa0321680-mRNA-1;_AED=0.97;_eAED=1.00;_QI=0\|0\|0\|0.33\|1\|1\|3\|0\|98
chr2_4	exon	23205404	23205583	23205404	ID=Msa0321680-mRNA-1:exon:8521;Parent=Msa0321680-mRNA-1
chr2_4	exon	23207854	23207914	23207854	ID=Msa0321680-mRNA-1:exon:8522;Parent=Msa0321680-mRNA-1
chr2_4	exon	23210584	23210639	23210584	ID=Msa0321680-mRNA-1:exon:8523;Parent=Msa0321680-mRNA-1
chr2_4	CDS	23205404	23205583	23205404	ID=Msa0321680-mRNA-1:cds;Parent=Msa0321680-mRNA-1
chr2_4	CDS	23207854	23207914	23207854	ID=Msa0321680-mRNA-1:cds;Parent=Msa0321680-mRNA-1
chr2_4	CDS	23210584	23210639	23210584	ID=Msa0321680-mRNA-1:cds;Parent=Msa0321680-mRNA-1

Gene Sequence	>Msa0321680 ATGGCGAAAGAAGAAGTGAAAACCGTTGTTCCTGAATCTGTTTTGAAGAAACAGAAAAGGAATGTGGAATGGGCATTGGTGAAGAAACAGGATCAAGAATCAGCGAAGAAGAAGAGAGCTGAAACCAGGAAGCTTATCTGGAGTAGAGCCAAACAGTACGCTAAGGAATACGATGACTCGGATCCAGCGCTTCTGCAGGGACGTCCACACGCTTCCTGGCTTCCTGGTATGAGACAGCCAAACATATATCGAGGAAAGACAAGAATATACCCTTCTGGTTTCTGCAAAAGCAATTAA
Protein sequence	>Msa0321680 MAKEEVKTVVPESVLKKQKRNVEWALVKKQDQESAKKKRAETRKLIWSRAKQYAKEYDDSDPALLQGRPHASWLPGMRQPNIYRGKTRIYPSGFCKSN*