AlfalfaGEDB | Msa0325790

M. sativa cultivar zhongmu-4 / Msa0325790

KEGG: K07198
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0007154 GO:0007165 GO:0007584 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009536 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0010107 GO:0010118 GO:0015672 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0030001 GO:0031667 GO:0034220 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0071704 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0140096 GO:1901564 GO:1901700
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0325790	XP_003595594.1	93.478	460	5	1	1	435	1	460	0.0	879

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0325790	sp\|Q93VD3\|CIPKN_ARATH	74.830	441	84	3	21	434	29	469	0.0	676

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0287260	Msa0325790	0.925366	2.023029e-90	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0325790	MtrunA17_Chr2g0304111	93.478	460	5	1	1	435	1	460	0.0	879
Msa0325790	MtrunA17_Chr5g0441011	62.963	432	128	5	17	422	7	432	0.0	562
Msa0325790	MtrunA17_Chr8g0346081	61.806	432	131	5	17	422	11	434	0.0	550
Msa0325790	MtrunA17_Chr8g0346071	61.717	431	132	4	17	422	11	433	0.0	549
Msa0325790	MtrunA17_Chr4g0063881	53.023	430	172	4	17	420	5	430	1.50e-164	470
Msa0325790	MtrunA17_Chr5g0428031	53.256	430	169	5	19	421	5	429	1.06e-162	466
Msa0325790	MtrunA17_Chr4g0013131	54.987	391	164	6	22	408	11	393	7.10e-148	429
Msa0325790	MtrunA17_Chr2g0284031	50.860	407	176	5	21	408	29	430	3.30e-145	424
Msa0325790	MtrunA17_Chr8g0379091	50.120	415	175	5	21	408	24	433	3.07e-143	418
Msa0325790	MtrunA17_Chr2g0284011	52.130	399	185	4	14	408	3	399	3.58e-143	416

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0325790	AT1G30270.1	74.830	441	84	3	21	434	29	469	676
Msa0325790	AT1G30270.2	75.346	434	80	2	21	429	29	460	673
Msa0325790	AT1G01140.1	62.667	450	135	4	6	428	2	445	591
Msa0325790	AT1G01140.3	62.115	454	135	4	6	428	2	449	589
Msa0325790	AT1G01140.2	62.389	452	135	5	6	428	2	447	586
Msa0325790	AT1G30270.3	73.387	372	72	3	90	434	1	372	557
Msa0325790	AT2G26980.3	59.725	437	144	5	17	427	8	438	545
Msa0325790	AT2G26980.4	59.725	437	144	5	17	427	18	448	544
Msa0325790	AT2G26980.5	65.128	390	129	4	17	405	8	391	537
Msa0325790	AT5G21326.1	59.674	429	141	5	19	421	9	431	526

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Find 140 sgRNAs with CRISPR-Local

Find 468 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGACCAACATGAGAGA+TGG	0.542767	2_4:+33654161	None:intergenic
AAACTCACCCGAACTTGTTG+AGG	0.596291	2_4:+33657998	None:intergenic
AAAGAAAGAAAAGGTTTAGA+AGG	0.330065	2_4:+33662030	None:intergenic
AAAGCCTGAGAATTTGTTGC+TGG	0.449587	2_4:-33658068	Msa0325790:intron
AAATGTCATACGCATGCATG+AGG	0.640662	2_4:-33658871	Msa0325790:intron
AAATTGAGACAGGCTCGCAG+TGG	0.669886	2_4:-33658538	Msa0325790:intron
AACGGAGGCAGCAGCAACGG+CGG	0.578341	2_4:-33661554	Msa0325790:CDS
AACGGCGGACGTGCGAAGGC+GGG	0.484040	2_4:-33661539	Msa0325790:CDS
AAGAAAAGGTTTAGAAGGAA+TGG	0.468246	2_4:+33662035	None:intergenic
AAGAGGTTTATGTTTATGTG+AGG	0.565781	2_4:+33662077	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTCATGCATAATTGTCAAAA+TGG	+	chr2_4:33654155-33654174	None:intergenic	30.0%
GTTTATGTTTATGTGAGGAA+AGG	+	chr2_4:33654197-33654216	None:intergenic	30.0%
AAGAGGTTTATGTTTATGTG+AGG	+	chr2_4:33654202-33654221	None:intergenic	30.0%
AAGAAAAGGTTTAGAAGGAA+TGG	+	chr2_4:33654244-33654263	None:intergenic	30.0%
GGTGGAATAAACAAAAAACA+AGG	+	chr2_4:33654344-33654363	None:intergenic	30.0%
AGATTTAACGTTTGTGATTG+AGG	+	chr2_4:33654445-33654464	None:intergenic	30.0%
AGAGAGAAAGTGAAATAGTT+TGG	-	chr2_4:33654645-33654664	Msa0325790:intron	30.0%
GAACAAACTTAGTACTTGTT+TGG	-	chr2_4:33655193-33655212	Msa0325790:intron	30.0%
CACTGAATGACTAATGTATT+TGG	+	chr2_4:33655440-33655459	None:intergenic	30.0%
AAATAAGATCATGGTTCTTG+TGG	+	chr2_4:33655653-33655672	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	33654098	33662200	33654098	ID=Msa0325790;Name=Msa0325790
chr2_4	mRNA	33654098	33662200	33654098	ID=Msa0325790-mRNA-1;Parent=Msa0325790;Name=Msa0325790-mRNA-1;_AED=0.13;_eAED=0.13;_QI=600\|0.92\|1\|1\|1\|1\|14\|410\|435
chr2_4	exon	33654098	33654527	33654098	ID=Msa0325790-mRNA-1:exon:10827;Parent=Msa0325790-mRNA-1
chr2_4	exon	33655382	33655454	33655382	ID=Msa0325790-mRNA-1:exon:10826;Parent=Msa0325790-mRNA-1
chr2_4	exon	33655847	33655903	33655847	ID=Msa0325790-mRNA-1:exon:10825;Parent=Msa0325790-mRNA-1
chr2_4	exon	33656227	33656343	33656227	ID=Msa0325790-mRNA-1:exon:10824;Parent=Msa0325790-mRNA-1
chr2_4	exon	33656589	33656714	33656589	ID=Msa0325790-mRNA-1:exon:10823;Parent=Msa0325790-mRNA-1
chr2_4	exon	33656807	33656926	33656807	ID=Msa0325790-mRNA-1:exon:10822;Parent=Msa0325790-mRNA-1
chr2_4	exon	33657080	33657169	33657080	ID=Msa0325790-mRNA-1:exon:10821;Parent=Msa0325790-mRNA-1
chr2_4	exon	33657663	33657788	33657663	ID=Msa0325790-mRNA-1:exon:10820;Parent=Msa0325790-mRNA-1
chr2_4	exon	33657863	33657916	33657863	ID=Msa0325790-mRNA-1:exon:10819;Parent=Msa0325790-mRNA-1
chr2_4	exon	33658006	33658086	33658006	ID=Msa0325790-mRNA-1:exon:10818;Parent=Msa0325790-mRNA-1
chr2_4	exon	33658441	33658548	33658441	ID=Msa0325790-mRNA-1:exon:10817;Parent=Msa0325790-mRNA-1
chr2_4	exon	33658662	33658733	33658662	ID=Msa0325790-mRNA-1:exon:10816;Parent=Msa0325790-mRNA-1
chr2_4	exon	33658872	33658934	33658872	ID=Msa0325790-mRNA-1:exon:10815;Parent=Msa0325790-mRNA-1
chr2_4	exon	33661400	33662200	33661400	ID=Msa0325790-mRNA-1:exon:10814;Parent=Msa0325790-mRNA-1
chr2_4	five_prime_UTR	33661601	33662200	33661601	ID=Msa0325790-mRNA-1:five_prime_utr;Parent=Msa0325790-mRNA-1
chr2_4	CDS	33661400	33661600	33661400	ID=Msa0325790-mRNA-1:cds;Parent=Msa0325790-mRNA-1
chr2_4	CDS	33658872	33658934	33658872	ID=Msa0325790-mRNA-1:cds;Parent=Msa0325790-mRNA-1
chr2_4	CDS	33658662	33658733	33658662	ID=Msa0325790-mRNA-1:cds;Parent=Msa0325790-mRNA-1
chr2_4	CDS	33658441	33658548	33658441	ID=Msa0325790-mRNA-1:cds;Parent=Msa0325790-mRNA-1
chr2_4	CDS	33658006	33658086	33658006	ID=Msa0325790-mRNA-1:cds;Parent=Msa0325790-mRNA-1
chr2_4	CDS	33657863	33657916	33657863	ID=Msa0325790-mRNA-1:cds;Parent=Msa0325790-mRNA-1
chr2_4	CDS	33657663	33657788	33657663	ID=Msa0325790-mRNA-1:cds;Parent=Msa0325790-mRNA-1
chr2_4	CDS	33657080	33657169	33657080	ID=Msa0325790-mRNA-1:cds;Parent=Msa0325790-mRNA-1
chr2_4	CDS	33656807	33656926	33656807	ID=Msa0325790-mRNA-1:cds;Parent=Msa0325790-mRNA-1
chr2_4	CDS	33656589	33656714	33656589	ID=Msa0325790-mRNA-1:cds;Parent=Msa0325790-mRNA-1
chr2_4	CDS	33656227	33656343	33656227	ID=Msa0325790-mRNA-1:cds;Parent=Msa0325790-mRNA-1
chr2_4	CDS	33655847	33655903	33655847	ID=Msa0325790-mRNA-1:cds;Parent=Msa0325790-mRNA-1
chr2_4	CDS	33655382	33655454	33655382	ID=Msa0325790-mRNA-1:cds;Parent=Msa0325790-mRNA-1
chr2_4	CDS	33654508	33654527	33654508	ID=Msa0325790-mRNA-1:cds;Parent=Msa0325790-mRNA-1
chr2_4	three_prime_UTR	33654098	33654507	33654098	ID=Msa0325790-mRNA-1:three_prime_utr;Parent=Msa0325790-mRNA-1

Gene Sequence

>Msa0325790

ATGACGTCACGTTCATCGAATAGCAACGGAGGCAGCAGCAACGGCGGACGTGCGAAGGCGGGAAAGTATGAGCTGGGTAGGACGTTAGGTGAAGGTAATTTCGCGAAGGTGAAGTTTGCGAGACACGTGGAAACCGGTGATCATGTTGCTATCAAGATACTTGATAAAGAAAAAATTCTCAAGCATAAAATGATTCGTCAGATAAAACAAGAAATATCAACAATGAAACTGATTAGACACCCAAATGTCATACGCATGCATGAGGTAATAGCTAACAGGTCAAAGATATTCATTGTAATGGAACTTGTGACTGGTGGGGAACTGTTTGATAAAATTGCTCGCAGTGGGAGGTTGAAAGAAGACGAAGCAAGAAAATATTTTCAGCAGCTTATATGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTGCCACAGAGATCTAAAGCCTGAGAATTTGTTGCTGGATGCTAATGGAACGCTTAAAGTATCGGATTTTGGATTGAGTGCATTGCCTCAACAAGTTCGGGAAGATGGGCTACTTCACACAACATGTGGTACACCAAATTATGTTGCTCCAGAGGTGATCCAAAACAAAGGGTATGATGGTGCAATTGCAGATCTCTGGTCATGTGGTGTTATTCTTTTTGTTTTAATGGCTGGCTATTTGCCCTTTGAAGAAGACAATCTTGTAGCTTTATATAAAAAGATTTTCAAGGCTGACTTCACCTGCCCTCCATGGTTCTCATCAAGTGCAAAGAAACTAATCAAAAGAATTCTTGATCCCAGTCCTATCACACGGATTAAAATTGCCGAGGTCATTGAAAATGAGTGGTTCAAGAAGGGATATAAACCTCCTGTGTTTGAACAGGCCGATGTTAGTCTTGATGATGTAAATTCTATTTTCAATGGTTATATGGATTCAGATAATATTGTTGTTGAGAGGCAAGAAGAGGGACCTGTTGCACCTGTCACCATGAATGCCTTTGAACTTATCTCTAAGTCTCAGGGCCTCAACCTTAGCAGTCTTTTCGAGAAGCAAATGGGACTTGTTAAAAGGGAAACGAGATTCACATCCAAATGTTCAGCGAATGAGATAATTTCAAAAATCGAGAAAACTGCAGGACCTCTGGGTTTTGATGTCAAGAAGAACAACTGCAAGTTAAGGATTTATGGGGAAAAAACTGGACGGAAAGGTCATCTATCTGTAGCTACTGAGTTCTACAAAAGTATAACTACTGGGCTGAAAGATATTGTTTGGAGAGCAGATCCTATTGCTGAAGAAAATGATGGTGCCAGTACCTCAAAATAA

Protein sequence

>Msa0325790

MTSRSSNSNGGSSNGGRAKAGKYELGRTLGEGNFAKVKFARHVETGDHVAIKILDKEKILKHKMIRQIKQEISTMKLIRHPNVIRMHEVIANRSKIFIVMELVTGGELFDKIARSGRLKEDEARKYFQQLICAVDYCHSRGVCHRDLKPENLLLDANGTLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIQNKGYDGAIADLWSCGVILFVLMAGYLPFEEDNLVALYKKIFKADFTCPPWFSSSAKKLIKRILDPSPITRIKIAEVIENEWFKKGYKPPVFEQADVSLDDVNSIFNGYMDSDNIVVERQEEGPVAPVTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSKCSANEIISKIEKTAGPLGFDVKKNNCKLRIYGEKTGRKGHLSVATEFYKSITTGLKDIVWRADPIAEENDGASTSK*