AlfalfaGEDB | Msa0332030

M. sativa cultivar zhongmu-4 / Msa0332030

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0332030	XP_003595077.1	85.246	244	27	1	1	235	1	244	1.80e-146	418

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0332030	sp\|Q2HIV9\|BH035_ARATH	61.574	216	78	4	17	232	30	240	1.15e-80	244

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0332030	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0244600	Msa0332030	0.832870	7.385423e-56	-8.615850e-47
Msa0283600	Msa0332030	0.897978	8.317854e-77	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0332030	MtrunA17_Chr2g0298751	85.246	244	27	1	1	235	1	244	1.66e-150	418
Msa0332030	MtrunA17_Chr8g0365711	32.353	170	107	2	42	211	243	404	2.95e-23	97.1
Msa0332030	MtrunA17_Chr2g0320291	28.934	197	117	5	42	233	132	310	2.03e-19	85.1
Msa0332030	MtrunA17_Chr1g0211081	29.279	222	130	6	12	209	280	498	2.36e-19	86.3
Msa0332030	MtrunA17_Chr3g0131691	29.570	186	125	4	39	223	294	474	2.95e-16	77.4
Msa0332030	MtrunA17_Chr7g0252041	30.645	186	124	3	40	223	283	465	5.29e-16	76.6
Msa0332030	MtrunA17_Chr4g0028071	32.051	156	93	3	42	196	148	291	8.11e-16	75.5
Msa0332030	MtrunA17_Chr4g0049331	26.396	197	123	5	2	196	99	275	5.23e-14	70.1
Msa0332030	MtrunA17_Chr7g0275821	58.182	55	23	0	44	98	253	307	2.05e-13	68.9
Msa0332030	MtrunA17_Chr7g0260841	49.367	79	29	3	44	122	356	423	8.78e-13	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0332030	AT5G57150.1	60.909	220	81	4	13	232	25	239	7.96e-82	245
Msa0332030	AT4G29930.1	49.200	250	104	3	1	229	1	248	1.84e-73	224
Msa0332030	AT5G57150.5	63.402	194	66	4	13	206	25	213	1.35e-72	221
Msa0332030	AT5G57150.3	64.211	190	63	4	17	206	30	214	2.37e-72	220
Msa0332030	AT5G57150.2	63.542	192	65	4	17	208	30	216	2.41e-72	220
Msa0332030	AT5G57150.4	64.211	190	63	4	17	206	30	214	2.49e-71	219
Msa0332030	AT4G29930.6	49.167	240	93	3	1	229	1	222	5.86e-71	216
Msa0332030	AT4G29930.2	48.750	240	91	3	1	229	1	219	2.98e-70	215
Msa0332030	AT4G29930.3	48.899	227	93	3	1	206	1	225	3.17e-64	201
Msa0332030	AT4G29930.7	48.899	227	93	3	1	206	1	225	3.17e-64	201

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Find 67 sgRNAs with CRISPR-Local

Find 425 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGCTTCCTGTGTTGCTA+AGG	0.527358	2_4:+48322825	Msa0332030:CDS
AATTTCAACTTTAACAACCA+TGG	0.540733	2_4:+48321972	Msa0332030:exon
ACACATGGAAGAGAATATAA+TGG	0.483631	2_4:+48323947	Msa0332030:CDS
ACATGTTGGTCTCCCGGTAA+GGG	0.528733	2_4:-48322017	None:intergenic
ACATTGTCTCTGAGAGGAAC+AGG	0.441534	2_4:+48322233	Msa0332030:CDS
ACTCCTTGCACTTAGAGCAG+TGG	0.656584	2_4:+48322276	Msa0332030:CDS
AGATAATGGAACTTGAATTT+GGG	0.453081	2_4:+48322765	Msa0332030:CDS
AGATGCTCATAGGGCTTAGA+GGG	0.580755	2_4:-48328601	None:intergenic
AGGGTCATTAAGAGTTGCAA+TGG	0.565369	2_4:-48328582	None:intergenic
AGTATATAAGTTTAGGATTG+AGG	0.435254	2_4:+48328665	Msa0332030:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGATATTGTTACCTACATGT+TGG	-	chr2_4:48322034-48322053	None:intergenic	30.0%
TCACTTTGATTCAAGTATGA+AGG	+	chr2_4:48322060-48322079	Msa0332030:intron	30.0%
TGTTTACCTTGCTAATGTTT+GGG	-	chr2_4:48322303-48322322	None:intergenic	30.0%
ATGTTTACCTTGCTAATGTT+TGG	-	chr2_4:48322304-48322323	None:intergenic	30.0%
AGTACGAAAGGAAATGAATT+TGG	+	chr2_4:48322422-48322441	Msa0332030:intron	30.0%
TTGATGTCTTTGACATCTAT+TGG	+	chr2_4:48322569-48322588	Msa0332030:intron	30.0%
GGAAAATTTCAACCATCATA+TGG	+	chr2_4:48322590-48322609	Msa0332030:intron	30.0%
AAAGTGGATAAAGTCTGATT+TGG	-	chr2_4:48323721-48323740	None:intergenic	30.0%
ACACATGGAAGAGAATATAA+TGG	+	chr2_4:48323947-48323966	Msa0332030:CDS	30.0%
CACTCCTGAAATGAAATTAA+AGG	-	chr2_4:48324122-48324141	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	48321905	48328872	48321905	ID=Msa0332030;Name=Msa0332030
chr2_4	mRNA	48321905	48328872	48321905	ID=Msa0332030-mRNA-1;Parent=Msa0332030;Name=Msa0332030-mRNA-1;_AED=0.02;_eAED=0.02;_QI=86\|1\|1\|1\|0.5\|0.8\|5\|247\|235
chr2_4	exon	48321905	48322037	48321905	ID=Msa0332030-mRNA-1:exon:14556;Parent=Msa0332030-mRNA-1
chr2_4	exon	48322150	48322315	48322150	ID=Msa0332030-mRNA-1:exon:14557;Parent=Msa0332030-mRNA-1
chr2_4	exon	48322686	48322919	48322686	ID=Msa0332030-mRNA-1:exon:14558;Parent=Msa0332030-mRNA-1
chr2_4	exon	48323936	48324106	48323936	ID=Msa0332030-mRNA-1:exon:14559;Parent=Msa0332030-mRNA-1
chr2_4	exon	48328536	48328872	48328536	ID=Msa0332030-mRNA-1:exon:14560;Parent=Msa0332030-mRNA-1
chr2_4	five_prime_UTR	48321905	48321990	48321905	ID=Msa0332030-mRNA-1:five_prime_utr;Parent=Msa0332030-mRNA-1
chr2_4	CDS	48321991	48322037	48321991	ID=Msa0332030-mRNA-1:cds;Parent=Msa0332030-mRNA-1
chr2_4	CDS	48322150	48322315	48322150	ID=Msa0332030-mRNA-1:cds;Parent=Msa0332030-mRNA-1
chr2_4	CDS	48322686	48322919	48322686	ID=Msa0332030-mRNA-1:cds;Parent=Msa0332030-mRNA-1
chr2_4	CDS	48323936	48324106	48323936	ID=Msa0332030-mRNA-1:cds;Parent=Msa0332030-mRNA-1
chr2_4	CDS	48328536	48328625	48328536	ID=Msa0332030-mRNA-1:cds;Parent=Msa0332030-mRNA-1
chr2_4	three_prime_UTR	48328626	48328872	48328626	ID=Msa0332030-mRNA-1:three_prime_utr;Parent=Msa0332030-mRNA-1

Gene Sequence

>Msa0332030

ATGGAGAACATTGGTGCTGAGTACAACCCTTACCGGGAGACCAACATTTGGGGATTGGATGAGGCTTTAACAGGGTATTATGATTCAAGCTCCGCGGATGGTGCAGCATCATCAGGAGTTTCATCTAAGAACATTGTCTCTGAGAGGAACAGGAGGAATAAGCTTAATGAAAGACTCCTTGCACTTAGAGCAGTGGTCCCAAACATTAGCAAGATGGATAAAGCTTCAATTATTAAGGATGCTATTGAGTACATACAAGTCTTGCATGAGCAAGAGAAGGTTATTCAAGCTGAGATAATGGAACTTGAATTTGGGATGCCTAATAATATTAATCCAAACTATGATTTTGATCAAGAGCTTCCTGTGTTGCTAAGGTCCAAGAAGAAGAGAACAAATCAGTTATATGATTCTATCAGTACAAGAAACTTTCCAATTGAAGTCCTTGAGCTTAGGGTTACACACATGGAAGAGAATATAATGGTAGTGAGCATGACATGTAACAAAAGGGCAGACACAATGGTAAAATTGTGTGAAGTTTTCGAATCTTTGAAGCTCAAAATTATTACTGCCAATATATCCTCTTTCTCAGGCAGGCTTTCGAAGACAGTCTTCATTGAGGCAAATGAGGAAGATAAAGATCTATTGCAAATGAAGATCCAAACAGCCATTGCAACTCTTAATGACCCTCTAAGCCCTATGAGCATCTAA

Protein sequence

>Msa0332030

MENIGAEYNPYRETNIWGLDEALTGYYDSSSADGAASSGVSSKNIVSERNRRNKLNERLLALRAVVPNISKMDKASIIKDAIEYIQVLHEQEKVIQAEIMELEFGMPNNINPNYDFDQELPVLLRSKKKRTNQLYDSISTRNFPIEVLELRVTHMEENIMVVSMTCNKRADTMVKLCEVFESLKLKIITANISSFSGRLSKTVFIEANEEDKDLLQMKIQTAIATLNDPLSPMSI*