AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0333270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0333270 MtrunA17_Chr2g0316551 98.000 350 5 2 1 350 1 348 0.0 702
Msa0333270 MtrunA17_Chr2g0325131 53.254 338 127 9 1 336 1 309 3.31e-103 307
Msa0333270 MtrunA17_Chr4g0040891 52.874 348 118 15 1 337 1 313 1.49e-95 287
Msa0333270 MtrunA17_Chr8g0380611 51.456 103 43 2 203 305 229 324 3.88e-23 99.0
Msa0333270 MtrunA17_Chr5g0432701 51.064 94 46 0 209 302 158 251 2.31e-22 96.7
Msa0333270 MtrunA17_Chr4g0036071 46.018 113 57 1 208 320 358 466 1.17e-21 95.9
Msa0333270 MtrunA17_Chr2g0329551 29.371 286 167 7 74 329 68 348 1.40e-21 95.1
Msa0333270 MtrunA17_Chr3g0107491 46.316 95 51 0 208 302 175 269 1.12e-20 92.0
Msa0333270 MtrunA17_Chr6g0463571 49.474 95 48 0 208 302 149 243 1.28e-20 90.9
Msa0333270 MtrunA17_Chr3g0128781 46.316 95 51 0 208 302 106 200 2.38e-19 87.4
Msa0333270 MtrunA17_Chr1g0156051 49.495 99 46 2 207 303 384 480 1.05e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0333270 AT3G58120.1 51.003 349 99 7 1 317 1 309 9.70e-98 293
Msa0333270 AT2G42380.2 51.385 325 116 8 1 316 1 292 1.02e-84 259
Msa0333270 AT3G58120.2 48.447 322 94 7 1 290 1 282 8.21e-79 243
Msa0333270 AT2G42380.1 48.308 325 115 9 1 316 1 281 1.36e-74 233
Msa0333270 AT2G42380.5 48.377 308 97 9 1 289 1 265 1.36e-69 219
Msa0333270 AT2G42380.3 42.912 261 107 7 1 252 1 228 2.72e-42 147
Msa0333270 AT2G42380.4 42.912 261 107 7 1 252 1 228 2.72e-42 147
Msa0333270 AT1G58110.1 55.172 87 39 0 219 305 238 324 3.30e-23 99.8
Msa0333270 AT1G58110.2 55.172 87 39 0 219 305 238 324 3.30e-23 99.8
Msa0333270 AT2G40620.1 34.848 198 115 4 106 302 56 240 5.94e-23 98.6
Msa0333270 AT4G38900.2 50.526 95 47 0 208 302 392 486 1.55e-21 96.3
Msa0333270 AT4G38900.3 50.526 95 47 0 208 302 392 486 1.55e-21 96.3
Msa0333270 AT2G31370.5 40.000 140 79 1 208 342 199 338 1.75e-21 94.7
Msa0333270 AT5G04840.1 31.024 332 153 14 2 320 5 273 1.85e-21 93.6
Msa0333270 AT2G31370.2 37.423 163 97 1 185 342 176 338 2.25e-21 94.7
Msa0333270 AT2G31370.4 37.423 163 97 1 185 342 176 338 2.25e-21 94.7
Msa0333270 AT2G31370.1 37.423 163 97 1 185 342 176 338 2.25e-21 94.7
Msa0333270 AT2G31370.7 37.423 163 97 1 185 342 176 338 2.25e-21 94.7
Msa0333270 AT2G31370.3 37.423 163 97 1 185 342 176 338 2.25e-21 94.7
Msa0333270 AT2G31370.6 37.423 163 97 1 185 342 176 338 2.25e-21 94.7
Msa0333270 AT1G43700.1 43.333 120 67 1 199 318 183 301 3.53e-21 93.2
Msa0333270 AT1G06850.1 48.936 94 48 0 209 302 147 240 5.17e-21 92.8
Msa0333270 AT1G06070.1 41.880 117 62 1 208 324 208 318 9.51e-21 93.2
Msa0333270 AT2G21230.4 45.631 103 56 0 207 309 367 469 4.51e-20 91.7
Msa0333270 AT2G21230.1 45.631 103 56 0 207 309 367 469 4.51e-20 91.7
Msa0333270 AT1G35490.2 29.098 244 130 7 61 301 54 257 6.71e-20 89.0
Msa0333270 AT1G35490.1 29.098 244 130 7 61 301 54 257 6.71e-20 89.0
Msa0333270 AT4G38900.1 47.525 101 47 1 208 302 392 492 2.52e-19 89.4
Msa0333270 AT2G21230.3 42.202 109 57 1 207 309 367 475 1.02e-17 84.7
Msa0333270 AT5G04840.2 30.795 302 138 13 2 290 5 248 5.70e-17 79.7
Msa0333270 AT2G21230.2 48.193 83 43 0 207 289 367 449 1.12e-15 78.2
Msa0333270 AT2G12900.1 37.374 99 62 0 206 304 112 210 9.15e-13 68.2
Msa0333270 AT1G06850.2 71.111 45 13 0 209 253 147 191 2.04e-12 66.6
Msa0333270 AT5G07160.1 39.785 93 56 0 210 302 48 140 3.66e-12 63.9
Msa0333270 AT2G13150.1 35.000 100 65 0 206 305 145 244 1.36e-11 64.7

Find 142 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTGCAATCCGTTGCTTTA+TGG 0.114715 2_4:-50939205 None:intergenic
GAGGAAAATATGGCCAATTT+TGG 0.122443 2_4:-50937174 None:intergenic
CTTCATTGTTATTGCTATTT+TGG 0.141213 2_4:-50937573 None:intergenic
GGTTAAACTTCCTCTATATT+TGG 0.163856 2_4:+50937088 Msa0333270:five_prime_UTR
CACATACTCATTGGGATTAA+TGG 0.165650 2_4:+50937117 Msa0333270:exon
GTTAAACTTCCTCTATATTT+GGG 0.198499 2_4:+50937089 Msa0333270:five_prime_UTR
TTGTATATATACCAGAATTT+TGG 0.218450 2_4:+50938854 Msa0333270:intron
CTAATAAGGTCCTAAGGTTT+TGG 0.238431 2_4:-50936719 None:intergenic
CCCAAATAATCACCTTAAAA+AGG 0.251825 2_4:-50940454 None:intergenic
TTCAGTGCAGGTGATGTTTC+CGG 0.261998 2_4:-50937731 None:intergenic
GTCACCACGAGTTGCATTCT+TGG 0.266371 2_4:+50939146 Msa0333270:CDS
GGTGGTTGTGGTCGTGGTGG+TGG 0.279071 2_4:-50937242 None:intergenic
GACAAACAGTTATGAGTAAT+TGG 0.285725 2_4:+50940368 Msa0333270:three_prime_UTR
CAGAGAACATGGATATTAAT+TGG 0.292855 2_4:-50937477 None:intergenic
GATGGTCAGAAGTATTATTC+TGG 0.294836 2_4:-50937267 None:intergenic
ACCCTTTGGTGAGGAAAATA+TGG 0.310828 2_4:-50937184 None:intergenic
AAATATAGTGGGTTTGTATT+GGG 0.317210 2_4:+50940589 Msa0333270:three_prime_UTR
CAAGTACCATACCCCAAAAT+TGG 0.328203 2_4:+50937161 Msa0333270:CDS
AAAATATAGTGGGTTTGTAT+TGG 0.356749 2_4:+50940588 Msa0333270:three_prime_UTR
GTGATTATTTGGGATTGGTT+TGG 0.359608 2_4:+50940464 Msa0333270:three_prime_UTR
AAGGAGCGTAACATCTTTGC+AGG 0.362831 2_4:+50938938 Msa0333270:CDS
TTAAGGTGATTATTTGGGAT+TGG 0.390599 2_4:+50940459 Msa0333270:three_prime_UTR
TGGGGTTCACACATACTCAT+TGG 0.395235 2_4:+50937108 Msa0333270:five_prime_UTR
TGTTGTTGTGGCTGTGATGT+TGG 0.396153 2_4:-50940199 None:intergenic
GGGATATATATGTATGGAAA+TGG 0.396876 2_4:+50940609 Msa0333270:three_prime_UTR
AGGAGTGGTGGTGGCGGTGG+TGG 0.401882 2_4:+50937430 Msa0333270:CDS
ACTTCAAAATCTTGTTCTCT+CGG 0.405210 2_4:-50936941 None:intergenic
GTGATGGTGGTGATTGTTGA+TGG 0.405926 2_4:-50937285 None:intergenic
CGGTTGTTTGTGTGTTGGTT+AGG 0.406870 2_4:+50936973 Msa0333270:five_prime_UTR
AGTGGTGGTGGCGGTGGTGG+AGG 0.410009 2_4:+50937433 Msa0333270:CDS
CTGGGTGGTGGTTGTGGTCG+TGG 0.412786 2_4:-50937248 None:intergenic
TGCAGGAGTGGTGGTGGCGG+TGG 0.414536 2_4:+50937427 Msa0333270:CDS
CCAACAAAACATACAAAAGA+TGG 0.422195 2_4:+50940123 Msa0333270:CDS
TGTGGCTGTGATGTTGGTGT+TGG 0.423054 2_4:-50940193 None:intergenic
ATGTTCTCTGACAATGTTGC+CGG 0.425101 2_4:+50937490 Msa0333270:CDS
GGTTGTGGTCGTGGTGGTGG+AGG 0.426235 2_4:-50937239 None:intergenic
GGATTATGTATTATGTTCCT+TGG 0.430018 2_4:+50940299 Msa0333270:three_prime_UTR
GGATTTGCTCCTTGTGCTGA+TGG 0.435960 2_4:-50940228 None:intergenic
GACTGCAGGAGTGGTGGTGG+CGG 0.440441 2_4:+50937424 Msa0333270:CDS
CTTCAAAATCTTGTTCTCTC+GGG 0.444914 2_4:-50936940 None:intergenic
CGATAAGGCGTGGGGCTCAC+AGG 0.446573 2_4:+50937350 Msa0333270:CDS
TCATCAACGGCTTCATCCTT+AGG 0.449640 2_4:-50937661 None:intergenic
CATCTTTGAAAAGCTTGTCC+TGG 0.451454 2_4:-50939233 None:intergenic
TAAGGAACACATCACATGTT+AGG 0.451466 2_4:-50940323 None:intergenic
AAGGAGCAAATCCTCAGTTA+AGG 0.456072 2_4:+50940238 Msa0333270:CDS
GGGGTTCACACATACTCATT+GGG 0.456968 2_4:+50937109 Msa0333270:five_prime_UTR
AAAGCAACGGATTGCAGCAT+TGG 0.460058 2_4:+50939209 Msa0333270:CDS
AATCTAAGAAAAGAAAATAG+AGG 0.462725 2_4:+50936791 Msa0333270:five_prime_UTR
CACTCTCTCTCCAAAACCTT+AGG 0.470640 2_4:+50936709 Msa0333270:five_prime_UTR
TGTATTGGGATATATATGTA+TGG 0.474426 2_4:+50940603 Msa0333270:three_prime_UTR
ATGGTCAGAAGTATTATTCT+GGG 0.476907 2_4:-50937266 None:intergenic
ATCTTTGAAAAGCTTGTCCT+GGG 0.477116 2_4:-50939232 None:intergenic
GGCAATCAGCTCAGAGGTCA+AGG 0.479409 2_4:+50938883 Msa0333270:CDS
AGAAGTATTATTCTGGGTGG+TGG 0.481961 2_4:-50937260 None:intergenic
TAAGGAGGGACAAAATATAG+TGG 0.483315 2_4:+50940577 Msa0333270:three_prime_UTR
GGAGGTGATGTTTGACATTG+TGG 0.486295 2_4:-50937221 None:intergenic
TCCTCGACTTCTCCTCGATA+AGG 0.487643 2_4:+50937335 Msa0333270:CDS
ATTATTCTGGGTGGTGGTTG+TGG 0.489019 2_4:-50937254 None:intergenic
AAAACCAATGGCAATGGTGT+TGG 0.489245 2_4:+50937597 Msa0333270:CDS
ATCTACAACGGTTTCAGTGC+AGG 0.490753 2_4:-50937743 None:intergenic
ACGGATTGCAGCATTGGCCC+AGG 0.491712 2_4:+50939215 Msa0333270:CDS
TAGGAAGTTGACATGTGGAT+TGG 0.497196 2_4:+50940395 Msa0333270:three_prime_UTR
TAGATCCCAAGAGGGTCAAA+AGG 0.498983 2_4:+50937761 Msa0333270:CDS
AGGAGCAAATCCTCAGTTAA+GGG 0.505684 2_4:+50940239 Msa0333270:CDS
GTATTGTACATGACACAATA+TGG 0.507240 2_4:+50936845 Msa0333270:five_prime_UTR
AGAAGGAAATAGAAAGGTTG+AGG 0.509958 2_4:+50940089 Msa0333270:CDS
CAGTAAGAATCATACGTTGA+TGG 0.511877 2_4:-50939170 None:intergenic
ACTTCTCCTCGATAAGGCGT+GGG 0.514254 2_4:+50937341 Msa0333270:CDS
ACATGAGCCGTCGTCATCAA+CGG 0.516208 2_4:-50937674 None:intergenic
GAAGACTGCAGGAGTGGTGG+TGG 0.518418 2_4:+50937421 Msa0333270:CDS
GCGGCGGTGCCATCTTCCTC+CGG 0.518810 2_4:+50937712 Msa0333270:CDS
TTCCTTATCAAAGTTGATGT+GGG 0.518899 2_4:+50940339 Msa0333270:three_prime_UTR
AATACATTTCTGAGCTTGAA+AGG 0.519087 2_4:+50938919 Msa0333270:CDS
GTTATGAGTAATTGGAGGGT+AGG 0.521398 2_4:+50940376 Msa0333270:three_prime_UTR
TGGTGGAGGATTTGATAGAC+TGG 0.528585 2_4:+50937447 Msa0333270:CDS
TACTCATAACTGTTTGTCAT+GGG 0.531448 2_4:-50940363 None:intergenic
CATCACAACAATTACCATCA+TGG 0.531974 2_4:+50937302 Msa0333270:CDS
GACTTCTCCTCGATAAGGCG+TGG 0.532570 2_4:+50937340 Msa0333270:CDS
GTATCCAACACCATTGCCAT+TGG 0.533106 2_4:-50937601 None:intergenic
GGCAACATTGTCAGAGAACA+TGG 0.535418 2_4:-50937488 None:intergenic
GCCCCACATCAACTTTGATA+AGG 0.538374 2_4:-50940341 None:intergenic
TTAAACTTCCTCTATATTTG+GGG 0.540792 2_4:+50937090 Msa0333270:five_prime_UTR
AGTAGTGGGAGACAAGAGAG+AGG 0.542910 2_4:-50936909 None:intergenic
TGATGGAAAGATTGTTGTTG+TGG 0.543696 2_4:-50940211 None:intergenic
GAGGAAGGCAATAGAGTCAC+TGG 0.543901 2_4:-50937380 None:intergenic
TGGTCGGAGGATGGTGACGA+TGG 0.544700 2_4:-50937553 None:intergenic
GGTCGGAGGATGGTGACGAT+GGG 0.544837 2_4:-50937552 None:intergenic
TCATCATGAAGTGAAGCCTA+AGG 0.546604 2_4:+50937645 Msa0333270:CDS
CATTAAAGAAGGAAATAGAA+AGG 0.550196 2_4:+50940083 Msa0333270:CDS
GGAGGATGGTGACGATGGGT+TGG 0.554167 2_4:-50937548 None:intergenic
GTGATGTTTCCGGAGGAAGA+TGG 0.559029 2_4:-50937721 None:intergenic
CATGATGGTAATTGTTGTGA+TGG 0.559426 2_4:-50937301 None:intergenic
CAACAAAACATACAAAAGAT+GGG 0.561228 2_4:+50940124 Msa0333270:CDS
ACATCAAGAAGCATTAAAGA+AGG 0.562831 2_4:+50940072 Msa0333270:CDS
CTCGGGCTTCTAAAAGTAGT+GGG 0.563423 2_4:-50936923 None:intergenic
TGATGAAAATAATGCTCTTG+AGG 0.568780 2_4:-50937628 None:intergenic
TTACTCATAACTGTTTGTCA+TGG 0.569714 2_4:-50940364 None:intergenic
ATGATGTTGATGATACCCTT+TGG 0.573676 2_4:-50937198 None:intergenic
CTCGAGGAAGACTGCAGGAG+TGG 0.574880 2_4:+50937415 Msa0333270:CDS
ATTTGCGGTTGTTTGTGTGT+TGG 0.580731 2_4:+50936968 Msa0333270:five_prime_UTR
GACCCTCTTGGGATCTACAA+CGG 0.581978 2_4:-50937755 None:intergenic
TCCTTATCAAAGTTGATGTG+GGG 0.583795 2_4:+50940340 Msa0333270:three_prime_UTR
TCTCGGGCTTCTAAAAGTAG+TGG 0.584165 2_4:-50936924 None:intergenic
AAGGAGGGACAAAATATAGT+GGG 0.585733 2_4:+50940578 Msa0333270:three_prime_UTR
AAACAGTTATGAGTAATTGG+AGG 0.587681 2_4:+50940371 Msa0333270:three_prime_UTR
GTTCCTTATCAAAGTTGATG+TGG 0.588662 2_4:+50940338 Msa0333270:three_prime_UTR
GACGTTGATGACAACGGCAA+AGG 0.589110 2_4:-50937526 None:intergenic
ATCTAAGAAAAGAAAATAGA+GGG 0.589949 2_4:+50936792 Msa0333270:five_prime_UTR
CAAAGGCGGGAAAGATACGC+CGG 0.592526 2_4:-50937509 None:intergenic
TTGATGACAACGGCAAAGGC+GGG 0.594747 2_4:-50937522 None:intergenic
GAGAAATGATGTCTCGAGGA+AGG 0.595132 2_4:-50937395 None:intergenic
CATTTCTCGAGGAAGACTGC+AGG 0.596326 2_4:+50937410 Msa0333270:CDS
GTTGATGACAACGGCAAAGG+CGG 0.597344 2_4:-50937523 None:intergenic
GGTGGTGGTTGTGGTCGTGG+TGG 0.597803 2_4:-50937245 None:intergenic
AGGAATTCGTCTATCCATGA+TGG 0.597813 2_4:-50937316 None:intergenic
GTGAGCCCCACGCCTTATCG+AGG 0.599484 2_4:-50937347 None:intergenic
TAAGGCGTGGGGCTCACAGG+CGG 0.603287 2_4:+50937353 Msa0333270:CDS
GTTAATAGTAACATTAACAA+TGG 0.606660 2_4:+50940154 Msa0333270:CDS
GAGGGTAGGAAGTTGACATG+TGG 0.607916 2_4:+50940390 Msa0333270:three_prime_UTR
CCTCGAGACATCATTTCTCG+AGG 0.612795 2_4:+50937399 Msa0333270:CDS
GAGGAAGACTGCAGGAGTGG+TGG 0.618813 2_4:+50937418 Msa0333270:CDS
TGTGTGAACCCCAAATATAG+AGG 0.622784 2_4:-50937098 None:intergenic
TATTAAAGAGATATGATGAG+AGG 0.622790 2_4:-50936882 None:intergenic
GATGGTAATTGTTGTGATGG+TGG 0.623528 2_4:-50937298 None:intergenic
TACATGACACAATATGGTGC+AGG 0.629446 2_4:+50936851 Msa0333270:five_prime_UTR
AACAGTTATGAGTAATTGGA+GGG 0.634282 2_4:+50940372 Msa0333270:three_prime_UTR
GCAATCAGCTCAGAGGTCAA+GGG 0.637616 2_4:+50938884 Msa0333270:CDS
CCTCGAGAAATGATGTCTCG+AGG 0.646437 2_4:-50937399 None:intergenic
GATGAAGCCGTTGATGACGA+CGG 0.646934 2_4:+50937667 Msa0333270:CDS
GCCTTATCGAGGAGAAGTCG+AGG 0.651890 2_4:-50937336 None:intergenic
CACATCACATGTTAGGACCA+AGG 0.658601 2_4:-50940316 None:intergenic
CTTCTCCTCGATAAGGCGTG+GGG 0.658846 2_4:+50937342 Msa0333270:CDS
ACAATCTTTCCATCAGCACA+AGG 0.663801 2_4:+50940219 Msa0333270:CDS
GTCAGAAGTATTATTCTGGG+TGG 0.668741 2_4:-50937263 None:intergenic
CTAATAGGCAATCAGCTCAG+AGG 0.670951 2_4:+50938877 Msa0333270:CDS
ACAACAGTGCCATAAAGCAA+CGG 0.673543 2_4:+50939196 Msa0333270:CDS
GTTGATGATACCCTTTGGTG+AGG 0.678486 2_4:-50937193 None:intergenic
AAACCGTTGTAGATCCCAAG+AGG 0.682209 2_4:+50937752 Msa0333270:CDS
AACCGTTGTAGATCCCAAGA+GGG 0.686614 2_4:+50937753 Msa0333270:CDS
AGTGCAGGTGATGTTTCCGG+AGG 0.699662 2_4:-50937728 None:intergenic
GGGTTGGACGTTGATGACAA+CGG 0.716785 2_4:-50937532 None:intergenic
TGGTCCAAGAATGCAACTCG+TGG 0.753629 2_4:-50939150 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTATCAAAACAATTTTA+TGG - chr2_4:50938209-50938228 None:intergenic 10.0%
!! GATTTATTTATATGTAAAAT+TGG + chr2_4:50939014-50939033 Msa0333270:intron 10.0%
!!! CAATATTTTAGAAATAAAAT+GGG - chr2_4:50940028-50940047 None:intergenic 10.0%
!!! TCAATATTTTAGAAATAAAA+TGG - chr2_4:50940029-50940048 None:intergenic 10.0%
!!! TATTTTCTTTTCTTAGATTA+TGG - chr2_4:50936790-50936809 None:intergenic 15.0%
!!! GACACTTTTTTTTAAAAAAT+GGG - chr2_4:50938481-50938500 None:intergenic 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr2_4:50938550-50938569 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr2_4:50938551-50938570 None:intergenic 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG - chr2_4:50938615-50938634 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG - chr2_4:50938616-50938635 None:intergenic 15.0%
!!! TAGTAAATATTTGACTTTTA+TGG + chr2_4:50938684-50938703 Msa0333270:intron 15.0%
!! TTTCATATTGTATGTAAAAT+TGG + chr2_4:50938992-50939011 Msa0333270:intron 15.0%
!!! GTAATTTTTGTTAATTAGAA+AGG + chr2_4:50939350-50939369 Msa0333270:intron 15.0%
!!! TTCAAAAATATGTTTTTGTA+GGG - chr2_4:50939539-50939558 None:intergenic 15.0%
!!! TTTCAAAAATATGTTTTTGT+AGG - chr2_4:50939540-50939559 None:intergenic 15.0%
!!! TTTTTCAATTTTCCTTTTTA+AGG + chr2_4:50940442-50940461 Msa0333270:three_prime_UTR 15.0%
!!! GTATGTATTGTTTTCTAATA+AGG - chr2_4:50936736-50936755 None:intergenic 20.0%
!! AATCTAAGAAAAGAAAATAG+AGG + chr2_4:50936791-50936810 Msa0333270:five_prime_UTR 20.0%
!! ATCTAAGAAAAGAAAATAGA+GGG + chr2_4:50936792-50936811 Msa0333270:five_prime_UTR 20.0%
!! CTATGATATGATATAGTAAA+TGG + chr2_4:50937820-50937839 Msa0333270:intron 20.0%
!!! TTTTCTTCAAGAAAAAACAA+TGG - chr2_4:50937988-50938007 None:intergenic 20.0%
!! AAAAAATTCTCTGTTAATTG+AGG + chr2_4:50938005-50938024 Msa0333270:intron 20.0%
!! AAAAATTCTCTGTTAATTGA+GGG + chr2_4:50938006-50938025 Msa0333270:intron 20.0%
!!! AATAAATTGAAAGTTTTTGC+TGG + chr2_4:50938105-50938124 Msa0333270:intron 20.0%
!! AAAATTAATGATCAAAACCA+TGG + chr2_4:50938239-50938258 Msa0333270:intron 20.0%
!! CTTAAACAAATTAATATCCA+TGG - chr2_4:50938259-50938278 None:intergenic 20.0%
!!! GGACACTTTTTTTTAAAAAA+TGG - chr2_4:50938482-50938501 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr2_4:50938591-50938610 None:intergenic 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG - chr2_4:50938614-50938633 None:intergenic 20.0%
!! TGATAATAAGCAATTAGATT+TGG - chr2_4:50938833-50938852 None:intergenic 20.0%
!!! TTGTATATATACCAGAATTT+TGG + chr2_4:50938854-50938873 Msa0333270:intron 20.0%
!! TGAAAAATGTGAAAATGATT+TGG + chr2_4:50939063-50939082 Msa0333270:intron 20.0%
!! AAAAATGTTGAAAATGAAGA+CGG + chr2_4:50939110-50939129 Msa0333270:intron 20.0%
!!! TAGATTTGGAATTTTTCATA+TGG + chr2_4:50939506-50939525 Msa0333270:intron 20.0%
!! AATCTGACTATAATACAATT+GGG - chr2_4:50939850-50939869 None:intergenic 20.0%
!! TTAGTTCAATTATAGTAAAC+CGG + chr2_4:50939957-50939976 Msa0333270:intron 20.0%
!! GTTAATAGTAACATTAACAA+TGG + chr2_4:50940154-50940173 Msa0333270:CDS 20.0%
!! GGAAAAAAAATAGAAAAAAG+TGG + chr2_4:50940278-50940297 Msa0333270:three_prime_UTR 20.0%
!!! ATTCTCAATGATTTTCTTTT+TGG + chr2_4:50940546-50940565 Msa0333270:three_prime_UTR 20.0%
!!! TTCTCAATGATTTTCTTTTT+GGG + chr2_4:50940547-50940566 Msa0333270:three_prime_UTR 20.0%
!!! TTATTTTCTCCTATTTTTTG+TGG + chr2_4:50940646-50940665 Msa0333270:three_prime_UTR 20.0%
!!! TTCTTGTATTTTTCTTTACT+TGG + chr2_4:50940697-50940716 Msa0333270:three_prime_UTR 20.0%
!!! TCTTGTATTTTTCTTTACTT+GGG + chr2_4:50940698-50940717 Msa0333270:three_prime_UTR 20.0%
! TATTAAAGAGATATGATGAG+AGG - chr2_4:50936885-50936904 None:intergenic 25.0%
!!! GATTTTGAAGTAAAGATTTG+CGG + chr2_4:50936953-50936972 Msa0333270:five_prime_UTR 25.0%
! ACAACACAAACCAAAAATTT+CGG + chr2_4:50937067-50937086 Msa0333270:five_prime_UTR 25.0%
! GTTAAACTTCCTCTATATTT+GGG + chr2_4:50937089-50937108 Msa0333270:five_prime_UTR 25.0%
! TTAAACTTCCTCTATATTTG+GGG + chr2_4:50937090-50937109 Msa0333270:five_prime_UTR 25.0%
!!! ATTGTTATTGCTATTTTGGT+CGG - chr2_4:50937572-50937591 None:intergenic 25.0%
!!! CTTCATTGTTATTGCTATTT+TGG - chr2_4:50937576-50937595 None:intergenic 25.0%
! TAACAATGAAGAAAAACCAA+TGG + chr2_4:50937585-50937604 Msa0333270:CDS 25.0%
! AAAATTTAACGTGTAAGACT+GGG - chr2_4:50937950-50937969 None:intergenic 25.0%
! TAAAATTTAACGTGTAAGAC+TGG - chr2_4:50937951-50937970 None:intergenic 25.0%
! AATTGTAGTATAGATATGCA+TGG + chr2_4:50938134-50938153 Msa0333270:intron 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG - chr2_4:50938503-50938522 None:intergenic 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG - chr2_4:50938504-50938523 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr2_4:50938592-50938611 None:intergenic 25.0%
!! TAAACACATTTAAAGTCACA+GGG + chr2_4:50938707-50938726 Msa0333270:intron 25.0%
! ATTAACCAAGCTTATAAAGA+TGG - chr2_4:50939290-50939309 None:intergenic 25.0%
!!! TGTTGATAATCACTTAGATT+TGG + chr2_4:50939492-50939511 Msa0333270:intron 25.0%
! GCTGTTAAAAAAATCACTTT+AGG + chr2_4:50939718-50939737 Msa0333270:intron 25.0%
! TTATGATCATATTGAGATAG+TGG + chr2_4:50939747-50939766 Msa0333270:intron 25.0%
! TATGATCATATTGAGATAGT+GGG + chr2_4:50939748-50939767 Msa0333270:intron 25.0%
!! TTCAATTGAACATATTGGTT+TGG - chr2_4:50939800-50939819 None:intergenic 25.0%
! CAATCTGACTATAATACAAT+TGG - chr2_4:50939851-50939870 None:intergenic 25.0%
! TATTATAGTCAGATTGAACT+TGG + chr2_4:50939855-50939874 Msa0333270:intron 25.0%
! GTTTAAACCAAGATTAAACT+AGG + chr2_4:50939877-50939896 Msa0333270:intron 25.0%
! AGTTTATCCTAGTTTAATCT+TGG - chr2_4:50939887-50939906 None:intergenic 25.0%
! CATTAAAGAAGGAAATAGAA+AGG + chr2_4:50940083-50940102 Msa0333270:CDS 25.0%
! CAACAAAACATACAAAAGAT+GGG + chr2_4:50940124-50940143 Msa0333270:CDS 25.0%
!!! TCCTTTTTAAGGTGATTATT+TGG + chr2_4:50940453-50940472 Msa0333270:three_prime_UTR 25.0%
!!! CCTTTTTAAGGTGATTATTT+GGG + chr2_4:50940454-50940473 Msa0333270:three_prime_UTR 25.0%
!! TCTCAATGATTTTCTTTTTG+GGG + chr2_4:50940548-50940567 Msa0333270:three_prime_UTR 25.0%
!!! AAAATATAGTGGGTTTGTAT+TGG + chr2_4:50940588-50940607 Msa0333270:three_prime_UTR 25.0%
!!! AAATATAGTGGGTTTGTATT+GGG + chr2_4:50940589-50940608 Msa0333270:three_prime_UTR 25.0%
! TGTATTGGGATATATATGTA+TGG + chr2_4:50940603-50940622 Msa0333270:three_prime_UTR 25.0%
! TGTTTTCTAATAAGGTCCTA+AGG - chr2_4:50936728-50936747 None:intergenic 30.0%
GTATTGTACATGACACAATA+TGG + chr2_4:50936845-50936864 Msa0333270:five_prime_UTR 30.0%
ACTTCAAAATCTTGTTCTCT+CGG - chr2_4:50936944-50936963 None:intergenic 30.0%
! GGAAGTTTAACCGAAATTTT+TGG - chr2_4:50937080-50937099 None:intergenic 30.0%
GGTTAAACTTCCTCTATATT+TGG + chr2_4:50937088-50937107 Msa0333270:five_prime_UTR 30.0%
! AGGAAAATATGGCCAATTTT+GGG - chr2_4:50937176-50937195 None:intergenic 30.0%
!! ATGGTCAGAAGTATTATTCT+GGG - chr2_4:50937269-50937288 None:intergenic 30.0%
CAGAGAACATGGATATTAAT+TGG - chr2_4:50937480-50937499 None:intergenic 30.0%
TGATGAAAATAATGCTCTTG+AGG - chr2_4:50937631-50937650 None:intergenic 30.0%
ATCATAAATAGAACGTGCAT+GGG - chr2_4:50937864-50937883 None:intergenic 30.0%
TATCATAAATAGAACGTGCA+TGG - chr2_4:50937865-50937884 None:intergenic 30.0%
AAAAAATGGGTCAGTTATTC+CGG - chr2_4:50938468-50938487 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG - chr2_4:50938607-50938626 None:intergenic 30.0%
! GTAAACACATTTAAAGTCAC+AGG + chr2_4:50938706-50938725 Msa0333270:intron 30.0%
! AAACACATTTAAAGTCACAG+GGG + chr2_4:50938708-50938727 Msa0333270:intron 30.0%
!!! ATACCAGAATTTTGGCTAAT+AGG + chr2_4:50938862-50938881 Msa0333270:intron 30.0%
AATACATTTCTGAGCTTGAA+AGG + chr2_4:50938919-50938938 Msa0333270:CDS 30.0%
TTTCTCCATCTTTATAAGCT+TGG + chr2_4:50939282-50939301 Msa0333270:intron 30.0%
GAAGATCAACAAACAATTCT+AGG - chr2_4:50939458-50939477 None:intergenic 30.0%
CAACTACAAAACGATACTTA+GGG - chr2_4:50939656-50939675 None:intergenic 30.0%
! TATCGTTTTGTAGTTGGATT+GGG + chr2_4:50939660-50939679 Msa0333270:intron 30.0%
GTTCGTTCAATTGAACATAT+TGG - chr2_4:50939805-50939824 None:intergenic 30.0%
CATGGTTTAATTGAATCAAC+CGG - chr2_4:50939979-50939998 None:intergenic 30.0%
!! ACATCAAGAAGCATTAAAGA+AGG + chr2_4:50940072-50940091 Msa0333270:CDS 30.0%
! CCATCTTTTGTATGTTTTGT+TGG - chr2_4:50940126-50940145 None:intergenic 30.0%
CCAACAAAACATACAAAAGA+TGG + chr2_4:50940123-50940142 Msa0333270:CDS 30.0%
AAGGGAAAGAGAAAAAGAAA+AGG + chr2_4:50940257-50940276 Msa0333270:exon 30.0%
GGATTATGTATTATGTTCCT+TGG + chr2_4:50940299-50940318 Msa0333270:three_prime_UTR 30.0%
!! TTCCTTATCAAAGTTGATGT+GGG + chr2_4:50940339-50940358 Msa0333270:three_prime_UTR 30.0%
TACTCATAACTGTTTGTCAT+GGG - chr2_4:50940366-50940385 None:intergenic 30.0%
TTACTCATAACTGTTTGTCA+TGG - chr2_4:50940367-50940386 None:intergenic 30.0%
GACAAACAGTTATGAGTAAT+TGG + chr2_4:50940368-50940387 Msa0333270:three_prime_UTR 30.0%
AAACAGTTATGAGTAATTGG+AGG + chr2_4:50940371-50940390 Msa0333270:three_prime_UTR 30.0%
AACAGTTATGAGTAATTGGA+GGG + chr2_4:50940372-50940391 Msa0333270:three_prime_UTR 30.0%
CCCAAATAATCACCTTAAAA+AGG - chr2_4:50940457-50940476 None:intergenic 30.0%
! TTAAGGTGATTATTTGGGAT+TGG + chr2_4:50940459-50940478 Msa0333270:three_prime_UTR 30.0%
! CTCAATGATTTTCTTTTTGG+GGG + chr2_4:50940549-50940568 Msa0333270:three_prime_UTR 30.0%
GGGATATATATGTATGGAAA+TGG + chr2_4:50940609-50940628 Msa0333270:three_prime_UTR 30.0%
!!! TTTTCTCCTATTTTTTGTGG+AGG + chr2_4:50940649-50940668 Msa0333270:three_prime_UTR 30.0%
! CTAATAAGGTCCTAAGGTTT+TGG - chr2_4:50936722-50936741 None:intergenic 35.0%
CTTCAAAATCTTGTTCTCTC+GGG - chr2_4:50936943-50936962 None:intergenic 35.0%
CACATACTCATTGGGATTAA+TGG + chr2_4:50937117-50937136 Msa0333270:exon 35.0%
!! ATGGTACTTGGTATTTTAGG+AGG - chr2_4:50937151-50937170 None:intergenic 35.0%
! GGTATGGTACTTGGTATTTT+AGG - chr2_4:50937154-50937173 None:intergenic 35.0%
! GGAAAATATGGCCAATTTTG+GGG - chr2_4:50937175-50937194 None:intergenic 35.0%
! GAGGAAAATATGGCCAATTT+TGG - chr2_4:50937177-50937196 None:intergenic 35.0%
!! ATGATGTTGATGATACCCTT+TGG - chr2_4:50937201-50937220 None:intergenic 35.0%
!! GATGGTCAGAAGTATTATTC+TGG - chr2_4:50937270-50937289 None:intergenic 35.0%
CATGATGGTAATTGTTGTGA+TGG - chr2_4:50937304-50937323 None:intergenic 35.0%
CATCACAACAATTACCATCA+TGG + chr2_4:50937302-50937321 Msa0333270:CDS 35.0%
TGAAGAAAAACCAATGGCAA+TGG + chr2_4:50937591-50937610 Msa0333270:CDS 35.0%
AAAAATGGGTCAGTTATTCC+GGG - chr2_4:50938467-50938486 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + chr2_4:50938637-50938656 Msa0333270:intron 35.0%
CCAAAGTAGGTCAATTATAC+CGG + chr2_4:50938650-50938669 Msa0333270:intron 35.0%
CAAAGTAGGTCAATTATACC+GGG + chr2_4:50938651-50938670 Msa0333270:intron 35.0%
! AACACATTTAAAGTCACAGG+GGG + chr2_4:50938709-50938728 Msa0333270:intron 35.0%
TTGCCTATTAGCCAAAATTC+TGG - chr2_4:50938868-50938887 None:intergenic 35.0%
AATGTTGAAAATGAAGACGG+AGG + chr2_4:50939113-50939132 Msa0333270:intron 35.0%
CAGTAAGAATCATACGTTGA+TGG - chr2_4:50939173-50939192 None:intergenic 35.0%
! ATCTTTGAAAAGCTTGTCCT+GGG - chr2_4:50939235-50939254 None:intergenic 35.0%
CTAAAGTGACTAATTCTCAC+AGG - chr2_4:50939592-50939611 None:intergenic 35.0%
! CTGTGAGAATTAGTCACTTT+AGG + chr2_4:50939590-50939609 Msa0333270:intron 35.0%
AGGAACTAATTCTTCATGCT+AGG + chr2_4:50939610-50939629 Msa0333270:intron 35.0%
AACTAATTCTTCATGCTAGG+TGG + chr2_4:50939613-50939632 Msa0333270:intron 35.0%
CCAACTACAAAACGATACTT+AGG - chr2_4:50939657-50939676 None:intergenic 35.0%
!! CCTAAGTATCGTTTTGTAGT+TGG + chr2_4:50939654-50939673 Msa0333270:intron 35.0%
! GTATCGTTTTGTAGTTGGAT+TGG + chr2_4:50939659-50939678 Msa0333270:intron 35.0%
! ATCGTTTTGTAGTTGGATTG+GGG + chr2_4:50939661-50939680 Msa0333270:intron 35.0%
ATTGGGAATGTCGAATTGAA+CGG - chr2_4:50939833-50939852 None:intergenic 35.0%
AGGATAAACTAGTTGAACCA+TGG + chr2_4:50939897-50939916 Msa0333270:intron 35.0%
AACCATGGTTGAATCAAAGT+TGG + chr2_4:50939912-50939931 Msa0333270:intron 35.0%
AACCAACTTTGATTCAACCA+TGG - chr2_4:50939917-50939936 None:intergenic 35.0%
AGAAGGAAATAGAAAGGTTG+AGG + chr2_4:50940089-50940108 Msa0333270:CDS 35.0%
! TGATGGAAAGATTGTTGTTG+TGG - chr2_4:50940214-50940233 None:intergenic 35.0%
! TTTTCTCTTTCCCTTAACTG+AGG - chr2_4:50940252-50940271 None:intergenic 35.0%
TAAGGAACACATCACATGTT+AGG - chr2_4:50940326-50940345 None:intergenic 35.0%
!! GTTCCTTATCAAAGTTGATG+TGG + chr2_4:50940338-50940357 Msa0333270:three_prime_UTR 35.0%
!! TCCTTATCAAAGTTGATGTG+GGG + chr2_4:50940340-50940359 Msa0333270:three_prime_UTR 35.0%
!! GTGATTATTTGGGATTGGTT+TGG + chr2_4:50940464-50940483 Msa0333270:three_prime_UTR 35.0%
!! AATGATTTTCTTTTTGGGGG+TGG + chr2_4:50940552-50940571 Msa0333270:three_prime_UTR 35.0%
TAAGGAGGGACAAAATATAG+TGG + chr2_4:50940577-50940596 Msa0333270:three_prime_UTR 35.0%
AAGGAGGGACAAAATATAGT+GGG + chr2_4:50940578-50940597 Msa0333270:three_prime_UTR 35.0%
TACATGACACAATATGGTGC+AGG + chr2_4:50936851-50936870 Msa0333270:five_prime_UTR 40.0%
ATTTGCGGTTGTTTGTGTGT+TGG + chr2_4:50936968-50936987 Msa0333270:five_prime_UTR 40.0%
TGTGTGAACCCCAAATATAG+AGG - chr2_4:50937101-50937120 None:intergenic 40.0%
!!! CAATTTTGGGGTATGGTACT+TGG - chr2_4:50937163-50937182 None:intergenic 40.0%
CAAGTACCATACCCCAAAAT+TGG + chr2_4:50937161-50937180 Msa0333270:CDS 40.0%
!!! ATATGGCCAATTTTGGGGTA+TGG - chr2_4:50937170-50937189 None:intergenic 40.0%
! GCCATATTTTCCTCACCAAA+GGG + chr2_4:50937183-50937202 Msa0333270:CDS 40.0%
ACCCTTTGGTGAGGAAAATA+TGG - chr2_4:50937187-50937206 None:intergenic 40.0%
!! AGAAGTATTATTCTGGGTGG+TGG - chr2_4:50937263-50937282 None:intergenic 40.0%
!! GTCAGAAGTATTATTCTGGG+TGG - chr2_4:50937266-50937285 None:intergenic 40.0%
GATGGTAATTGTTGTGATGG+TGG - chr2_4:50937301-50937320 None:intergenic 40.0%
AGGAATTCGTCTATCCATGA+TGG - chr2_4:50937319-50937338 None:intergenic 40.0%
ATGTTCTCTGACAATGTTGC+CGG + chr2_4:50937490-50937509 Msa0333270:CDS 40.0%
!!! GTTATTGCTATTTTGGTCGG+AGG - chr2_4:50937569-50937588 None:intergenic 40.0%
AAAACCAATGGCAATGGTGT+TGG + chr2_4:50937597-50937616 Msa0333270:CDS 40.0%
TCATCATGAAGTGAAGCCTA+AGG + chr2_4:50937645-50937664 Msa0333270:CDS 40.0%
! GATTACCTTTTGACCCTCTT+GGG - chr2_4:50937769-50937788 None:intergenic 40.0%
! AGATTACCTTTTGACCCTCT+TGG - chr2_4:50937770-50937789 None:intergenic 40.0%
ATAAATAGAACGTGCATGGG+AGG - chr2_4:50937861-50937880 None:intergenic 40.0%
GTTGCCACAAAATTCTTGCA+TGG + chr2_4:50937920-50937939 Msa0333270:intron 40.0%
! CCATCCATGCAAGAATTTTG+TGG - chr2_4:50937927-50937946 None:intergenic 40.0%
CCACAAAATTCTTGCATGGA+TGG + chr2_4:50937924-50937943 Msa0333270:intron 40.0%
CCGGTATAATTGACCTACTT+TGG - chr2_4:50938653-50938672 None:intergenic 40.0%
ACAACAGTGCCATAAAGCAA+CGG + chr2_4:50939196-50939215 Msa0333270:CDS 40.0%
! CATCTTTGAAAAGCTTGTCC+TGG - chr2_4:50939236-50939255 None:intergenic 40.0%
! CAGGACAAGCTTTTCAAAGA+TGG + chr2_4:50939234-50939253 Msa0333270:CDS 40.0%
ATCGAACTAGTGAGACATCT+GGG - chr2_4:50940003-50940022 None:intergenic 40.0%
ACAATCTTTCCATCAGCACA+AGG + chr2_4:50940219-50940238 Msa0333270:CDS 40.0%
AAGGAGCAAATCCTCAGTTA+AGG + chr2_4:50940238-50940257 Msa0333270:CDS 40.0%
AGGAGCAAATCCTCAGTTAA+GGG + chr2_4:50940239-50940258 Msa0333270:CDS 40.0%
GTTATGAGTAATTGGAGGGT+AGG + chr2_4:50940376-50940395 Msa0333270:three_prime_UTR 40.0%
TAGGAAGTTGACATGTGGAT+TGG + chr2_4:50940395-50940414 Msa0333270:three_prime_UTR 40.0%
!! TTCTTTTTGGGGGTGGAATA+AGG + chr2_4:50940559-50940578 Msa0333270:three_prime_UTR 40.0%
!!! CTCCTATTTTTTGTGGAGGA+AGG + chr2_4:50940653-50940672 Msa0333270:three_prime_UTR 40.0%
CACCTTCCTCCACAAAAAAT+AGG - chr2_4:50940658-50940677 None:intergenic 40.0%
!!! CTATTTTTTGTGGAGGAAGG+TGG + chr2_4:50940656-50940675 Msa0333270:three_prime_UTR 40.0%
!!! CTAAGGTTTTGGAGAGAGAG+TGG - chr2_4:50936711-50936730 None:intergenic 45.0%
CACTCTCTCTCCAAAACCTT+AGG + chr2_4:50936709-50936728 Msa0333270:five_prime_UTR 45.0%
! CTCGGGCTTCTAAAAGTAGT+GGG - chr2_4:50936926-50936945 None:intergenic 45.0%
! TCTCGGGCTTCTAAAAGTAG+TGG - chr2_4:50936927-50936946 None:intergenic 45.0%
!! CGGTTGTTTGTGTGTTGGTT+AGG + chr2_4:50936973-50936992 Msa0333270:five_prime_UTR 45.0%
TGGGGTTCACACATACTCAT+TGG + chr2_4:50937108-50937127 Msa0333270:five_prime_UTR 45.0%
GGGGTTCACACATACTCATT+GGG + chr2_4:50937109-50937128 Msa0333270:five_prime_UTR 45.0%
! GGCCATATTTTCCTCACCAA+AGG + chr2_4:50937182-50937201 Msa0333270:CDS 45.0%
!! GTTGATGATACCCTTTGGTG+AGG - chr2_4:50937196-50937215 None:intergenic 45.0%
GGAGGTGATGTTTGACATTG+TGG - chr2_4:50937224-50937243 None:intergenic 45.0%
! ATTATTCTGGGTGGTGGTTG+TGG - chr2_4:50937257-50937276 None:intergenic 45.0%
!! GTGATGGTGGTGATTGTTGA+TGG - chr2_4:50937288-50937307 None:intergenic 45.0%
GAGAAATGATGTCTCGAGGA+AGG - chr2_4:50937398-50937417 None:intergenic 45.0%
TGGTGGAGGATTTGATAGAC+TGG + chr2_4:50937447-50937466 Msa0333270:CDS 45.0%
GGCAACATTGTCAGAGAACA+TGG - chr2_4:50937491-50937510 None:intergenic 45.0%
!!! TTGCTATTTTGGTCGGAGGA+TGG - chr2_4:50937565-50937584 None:intergenic 45.0%
GTATCCAACACCATTGCCAT+TGG - chr2_4:50937604-50937623 None:intergenic 45.0%
TCATCAACGGCTTCATCCTT+AGG - chr2_4:50937664-50937683 None:intergenic 45.0%
TTCAGTGCAGGTGATGTTTC+CGG - chr2_4:50937734-50937753 None:intergenic 45.0%
ATCTACAACGGTTTCAGTGC+AGG - chr2_4:50937746-50937765 None:intergenic 45.0%
AAACCGTTGTAGATCCCAAG+AGG + chr2_4:50937752-50937771 Msa0333270:CDS 45.0%
AACCGTTGTAGATCCCAAGA+GGG + chr2_4:50937753-50937772 Msa0333270:CDS 45.0%
TAGATCCCAAGAGGGTCAAA+AGG + chr2_4:50937761-50937780 Msa0333270:CDS 45.0%
! CTCTGTTAATTGAGGGTACG+TGG + chr2_4:50938013-50938032 Msa0333270:intron 45.0%
GTAGGTCAATTATACCGGGA+CGG + chr2_4:50938655-50938674 Msa0333270:intron 45.0%
ATTTACTACTACCTCCGTCC+CGG - chr2_4:50938672-50938691 None:intergenic 45.0%
CTAATAGGCAATCAGCTCAG+AGG + chr2_4:50938877-50938896 Msa0333270:CDS 45.0%
! AAGGAGCGTAACATCTTTGC+AGG + chr2_4:50938938-50938957 Msa0333270:CDS 45.0%
! TGCTGCAATCCGTTGCTTTA+TGG - chr2_4:50939208-50939227 None:intergenic 45.0%
!! AAAGCAACGGATTGCAGCAT+TGG + chr2_4:50939209-50939228 Msa0333270:CDS 45.0%
GATCGAACTAGTGAGACATC+TGG - chr2_4:50940004-50940023 None:intergenic 45.0%
TGTTGTTGTGGCTGTGATGT+TGG - chr2_4:50940202-50940221 None:intergenic 45.0%
CACATCACATGTTAGGACCA+AGG - chr2_4:50940319-50940338 None:intergenic 45.0%
GCCCCACATCAACTTTGATA+AGG - chr2_4:50940344-50940363 None:intergenic 45.0%
!! TTTTTGGGGGTGGAATAAGG+AGG + chr2_4:50940562-50940581 Msa0333270:three_prime_UTR 45.0%
!! TTTTGGGGGTGGAATAAGGA+GGG + chr2_4:50940563-50940582 Msa0333270:three_prime_UTR 45.0%
!! ATATTTCATATAATAAAATA+AGG + chr2_4:50937882-50937901 Msa0333270:intron 5.0%
!! AGAAATATATATAATAAATT+AGG - chr2_4:50939267-50939286 None:intergenic 5.0%
! AGTAGTGGGAGACAAGAGAG+AGG - chr2_4:50936912-50936931 None:intergenic 50.0%
TCCTCGACTTCTCCTCGATA+AGG + chr2_4:50937335-50937354 Msa0333270:CDS 50.0%
ACTTCTCCTCGATAAGGCGT+GGG + chr2_4:50937341-50937360 Msa0333270:CDS 50.0%
GAGGAAGGCAATAGAGTCAC+TGG - chr2_4:50937383-50937402 None:intergenic 50.0%
CCTCGAGAAATGATGTCTCG+AGG - chr2_4:50937402-50937421 None:intergenic 50.0%
CCTCGAGACATCATTTCTCG+AGG + chr2_4:50937399-50937418 Msa0333270:CDS 50.0%
CATTTCTCGAGGAAGACTGC+AGG + chr2_4:50937410-50937429 Msa0333270:CDS 50.0%
! TTGATGACAACGGCAAAGGC+GGG - chr2_4:50937525-50937544 None:intergenic 50.0%
!! GTTGATGACAACGGCAAAGG+CGG - chr2_4:50937526-50937545 None:intergenic 50.0%
!! GACGTTGATGACAACGGCAA+AGG - chr2_4:50937529-50937548 None:intergenic 50.0%
!! GGGTTGGACGTTGATGACAA+CGG - chr2_4:50937535-50937554 None:intergenic 50.0%
!! GATGAAGCCGTTGATGACGA+CGG + chr2_4:50937667-50937686 Msa0333270:CDS 50.0%
ACATGAGCCGTCGTCATCAA+CGG - chr2_4:50937677-50937696 None:intergenic 50.0%
CGACGGCTCATGTAAAAACG+AGG + chr2_4:50937684-50937703 Msa0333270:CDS 50.0%
CGGCTCATGTAAAAACGAGG+CGG + chr2_4:50937687-50937706 Msa0333270:CDS 50.0%
CTCATGTAAAAACGAGGCGG+CGG + chr2_4:50937690-50937709 Msa0333270:CDS 50.0%
GTGATGTTTCCGGAGGAAGA+TGG - chr2_4:50937724-50937743 None:intergenic 50.0%
GACCCTCTTGGGATCTACAA+CGG - chr2_4:50937758-50937777 None:intergenic 50.0%
AATAGAACGTGCATGGGAGG+TGG - chr2_4:50937858-50937877 None:intergenic 50.0%
ATAACATACTCCCTCCGTCC+CGG + chr2_4:50938446-50938465 Msa0333270:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr2_4:50938463-50938482 None:intergenic 50.0%
GCAATCAGCTCAGAGGTCAA+GGG + chr2_4:50938884-50938903 Msa0333270:CDS 50.0%
GTCACCACGAGTTGCATTCT+TGG + chr2_4:50939146-50939165 Msa0333270:CDS 50.0%
TGGTCCAAGAATGCAACTCG+TGG - chr2_4:50939153-50939172 None:intergenic 50.0%
CTAGTGAGACATCTGGGTCA+TGG - chr2_4:50939997-50940016 None:intergenic 50.0%
TGTGGCTGTGATGTTGGTGT+TGG - chr2_4:50940196-50940215 None:intergenic 50.0%
! GGATTTGCTCCTTGTGCTGA+TGG - chr2_4:50940231-50940250 None:intergenic 50.0%
GAGGGTAGGAAGTTGACATG+TGG + chr2_4:50940390-50940409 Msa0333270:three_prime_UTR 50.0%
GCCTTATCGAGGAGAAGTCG+AGG - chr2_4:50937339-50937358 None:intergenic 55.0%
GACTTCTCCTCGATAAGGCG+TGG + chr2_4:50937340-50937359 Msa0333270:CDS 55.0%
CTTCTCCTCGATAAGGCGTG+GGG + chr2_4:50937342-50937361 Msa0333270:CDS 55.0%
CAAAGGCGGGAAAGATACGC+CGG - chr2_4:50937512-50937531 None:intergenic 55.0%
ATGTAAAAACGAGGCGGCGG+CGG + chr2_4:50937693-50937712 Msa0333270:CDS 55.0%
AGTGCAGGTGATGTTTCCGG+AGG - chr2_4:50937731-50937750 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr2_4:50938459-50938478 None:intergenic 55.0%
GGTCAATTATACCGGGACGG+AGG + chr2_4:50938658-50938677 Msa0333270:intron 55.0%
GGCAATCAGCTCAGAGGTCA+AGG + chr2_4:50938883-50938902 Msa0333270:CDS 55.0%
CTCGAGGAAGACTGCAGGAG+TGG + chr2_4:50937415-50937434 Msa0333270:CDS 60.0%
GAGGAAGACTGCAGGAGTGG+TGG + chr2_4:50937418-50937437 Msa0333270:CDS 60.0%
GAAGACTGCAGGAGTGGTGG+TGG + chr2_4:50937421-50937440 Msa0333270:CDS 60.0%
! GGAGGATGGTGACGATGGGT+TGG - chr2_4:50937551-50937570 None:intergenic 60.0%
! GGTCGGAGGATGGTGACGAT+GGG - chr2_4:50937555-50937574 None:intergenic 60.0%
! TGGTCGGAGGATGGTGACGA+TGG - chr2_4:50937556-50937575 None:intergenic 60.0%
CGTGCATGGGAGGTGGTGAT+TGG - chr2_4:50937851-50937870 None:intergenic 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr2_4:50938460-50938479 None:intergenic 60.0%
!! ACGGATTGCAGCATTGGCCC+AGG + chr2_4:50939215-50939234 Msa0333270:CDS 60.0%
!! GGTTGTGGTCGTGGTGGTGG+AGG - chr2_4:50937242-50937261 None:intergenic 65.0%
GGTGGTTGTGGTCGTGGTGG+TGG - chr2_4:50937245-50937264 None:intergenic 65.0%
! GGTGGTGGTTGTGGTCGTGG+TGG - chr2_4:50937248-50937267 None:intergenic 65.0%
! CTGGGTGGTGGTTGTGGTCG+TGG - chr2_4:50937251-50937270 None:intergenic 65.0%
GTGAGCCCCACGCCTTATCG+AGG - chr2_4:50937350-50937369 None:intergenic 65.0%
CGATAAGGCGTGGGGCTCAC+AGG + chr2_4:50937350-50937369 Msa0333270:CDS 65.0%
TAAGGCGTGGGGCTCACAGG+CGG + chr2_4:50937353-50937372 Msa0333270:CDS 65.0%
!! GACTGCAGGAGTGGTGGTGG+CGG + chr2_4:50937424-50937443 Msa0333270:CDS 65.0%
TAAAAACGAGGCGGCGGCGG+CGG + chr2_4:50937696-50937715 Msa0333270:CDS 65.0%
!! TGCAGGAGTGGTGGTGGCGG+TGG + chr2_4:50937427-50937446 Msa0333270:CDS 70.0%
!! AGGAGTGGTGGTGGCGGTGG+TGG + chr2_4:50937430-50937449 Msa0333270:CDS 70.0%
!! AGTGGTGGTGGCGGTGGTGG+AGG + chr2_4:50937433-50937452 Msa0333270:CDS 70.0%
!! GCGGCGGTGCCATCTTCCTC+CGG + chr2_4:50937712-50937731 Msa0333270:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 50936708 50940736 50936708 ID=Msa0333270;Name=Msa0333270
chr2_4 mRNA 50936708 50940736 50936708 ID=Msa0333270-mRNA-1;Parent=Msa0333270;Name=Msa0333270-mRNA-1;_AED=0.02;_eAED=0.02;_QI=428|1|1|1|1|1|4|478|350
chr2_4 exon 50936708 50937782 50936708 ID=Msa0333270-mRNA-1:exon:15176;Parent=Msa0333270-mRNA-1
chr2_4 exon 50938869 50938959 50938869 ID=Msa0333270-mRNA-1:exon:15177;Parent=Msa0333270-mRNA-1
chr2_4 exon 50939129 50939255 50939129 ID=Msa0333270-mRNA-1:exon:15178;Parent=Msa0333270-mRNA-1
chr2_4 exon 50940071 50940736 50940071 ID=Msa0333270-mRNA-1:exon:15179;Parent=Msa0333270-mRNA-1
chr2_4 five_prime_UTR 50936708 50937135 50936708 ID=Msa0333270-mRNA-1:five_prime_utr;Parent=Msa0333270-mRNA-1
chr2_4 CDS 50937136 50937782 50937136 ID=Msa0333270-mRNA-1:cds;Parent=Msa0333270-mRNA-1
chr2_4 CDS 50938869 50938959 50938869 ID=Msa0333270-mRNA-1:cds;Parent=Msa0333270-mRNA-1
chr2_4 CDS 50939129 50939255 50939129 ID=Msa0333270-mRNA-1:cds;Parent=Msa0333270-mRNA-1
chr2_4 CDS 50940071 50940258 50940071 ID=Msa0333270-mRNA-1:cds;Parent=Msa0333270-mRNA-1
chr2_4 three_prime_UTR 50940259 50940736 50940259 ID=Msa0333270-mRNA-1:three_prime_utr;Parent=Msa0333270-mRNA-1
Gene Sequence

>Msa0333270

ATGGCACAGTTACCTCCTAAAATACCAAGTACCATACCCCAAAATTGGCCATATTTTCCTCACCAAAGGGTATCATCAACATCATCCACAATGTCAAACATCACCTCCACCACCACGACCACAACCACCACCCAGAATAATACTTCTGACCATCAACAATCACCACCATCACAACAATTACCATCATGGATAGACGAATTCCTCGACTTCTCCTCGATAAGGCGTGGGGCTCACAGGCGGTCTGCCAGTGACTCTATTGCCTTCCTCGAGACATCATTTCTCGAGGAAGACTGCAGGAGTGGTGGTGGCGGTGGTGGAGGATTTGATAGACTGGATGATGACCAATTAATATCCATGTTCTCTGACAATGTTGCCGGCGTATCTTTCCCGCCTTTGCCGTTGTCATCAACGTCCAACCCATCGTCACCATCCTCCGACCAAAATAGCAATAACAATGAAGAAAAACCAATGGCAATGGTGTTGGATACACAACCTCAAGAGCATTATTTTCATCATGAAGTGAAGCCTAAGGATGAAGCCGTTGATGACGACGGCTCATGTAAAAACGAGGCGGCGGCGGCGGTGCCATCTTCCTCCGGAAACATCACCTGCACTGAAACCGTTGTAGATCCCAAGAGGGTCAAAAGAATTTTGGCTAATAGGCAATCAGCTCAGAGGTCAAGGGTGAGAAAGTTGCAATACATTTCTGAGCTTGAAAGGAGCGTAACATCTTTGCAGACGGAGGTTTCAGCACTGTCACCACGAGTTGCATTCTTGGACCATCAACGTATGATTCTTACTGTCGACAACAGTGCCATAAAGCAACGGATTGCAGCATTGGCCCAGGACAAGCTTTTCAAAGATGCACATCAAGAAGCATTAAAGAAGGAAATAGAAAGGTTGAGGCAAATCTATCACCAACAAAACATACAAAAGATGGGAAATTCAGTTAATAGTAACATTAACAATGGTCATTCTCTTCAATCTCCAACACCAACATCACAGCCACAACAACAATCTTTCCATCAGCACAAGGAGCAAATCCTCAGTTAA
Protein sequence

>Msa0333270

MAQLPPKIPSTIPQNWPYFPHQRVSSTSSTMSNITSTTTTTTTTQNNTSDHQQSPPSQQLPSWIDEFLDFSSIRRGAHRRSASDSIAFLETSFLEEDCRSGGGGGGGFDRLDDDQLISMFSDNVAGVSFPPLPLSSTSNPSSPSSDQNSNNNEEKPMAMVLDTQPQEHYFHHEVKPKDEAVDDDGSCKNEAAAAVPSSSGNITCTETVVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVAFLDHQRMILTVDNSAIKQRIAALAQDKLFKDAHQEALKKEIERLRQIYHQQNIQKMGNSVNSNINNGHSLQSPTPTSQPQQQSFHQHKEQILS*