AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0334730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334730 MtrunA17_Chr2g0319001 97.917 528 10 1 1 528 1 527 0.0 1050
Msa0334730 MtrunA17_Chr2g0319011 87.066 317 41 0 212 528 1 317 0.0 569
Msa0334730 MtrunA17_Chr4g0042131 72.194 392 98 1 135 526 37 417 0.0 568
Msa0334730 MtrunA17_Chr2g0319021 85.612 139 18 2 1 139 1 137 7.50e-81 249
Msa0334730 MtrunA17_Chr8g0356471 32.448 527 323 9 12 524 8 515 1.08e-77 253
Msa0334730 MtrunA17_Chr4g0013581 31.068 515 328 8 17 524 7 501 1.81e-77 252
Msa0334730 MtrunA17_Chr4g0013591 32.742 507 313 9 25 524 21 506 1.87e-77 252
Msa0334730 MtrunA17_Chr8g0353141 31.845 515 323 11 19 524 10 505 3.63e-76 249
Msa0334730 MtrunA17_Chr8g0353161 31.650 515 324 11 19 524 10 505 1.04e-75 248
Msa0334730 MtrunA17_Chr5g0437201 30.171 527 330 10 19 524 10 519 1.79e-67 226
Msa0334730 MtrunA17_Chr5g0435421 30.019 513 335 7 20 524 12 508 4.56e-67 225
Msa0334730 MtrunA17_Chr4g0042121 61.644 146 46 5 1 138 1 144 1.21e-56 186
Msa0334730 MtrunA17_Chr4g0000061 25.819 519 299 18 43 524 25 494 2.95e-26 112
Msa0334730 MtrunA17_Chr4g0067801 26.126 222 136 7 175 390 13 212 1.44e-15 75.9
Msa0334730 MtrunA17_Chr4g0034681 25.000 420 266 18 135 518 80 486 1.38e-13 73.2
Msa0334730 MtrunA17_Chr7g0273281 24.190 401 253 17 134 511 111 483 3.06e-13 72.0
Msa0334730 MtrunA17_Chr6g0485661 23.460 422 268 17 127 511 95 498 4.65e-12 68.6
Msa0334730 MtrunA17_Chr2g0282031 25.743 404 240 17 150 518 117 495 6.53e-12 67.8
Msa0334730 MtrunA17_Chr3g0144361 23.223 422 273 16 135 518 78 486 2.11e-11 66.2
Msa0334730 MtrunA17_Chr2g0290181 24.275 276 182 10 142 404 86 347 5.26e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334730 AT3G20660.1 68.085 517 148 4 10 524 10 511 0.0 712
Msa0334730 AT1G73220.1 36.204 511 295 6 20 520 33 522 1.12e-99 311
Msa0334730 AT1G79360.1 34.165 521 313 10 19 524 7 512 1.01e-89 285
Msa0334730 AT1G16390.1 32.519 532 314 10 11 524 3 507 1.41e-87 279
Msa0334730 AT1G79410.1 31.638 531 321 14 8 524 1 503 2.03e-69 231
Msa0334730 AT1G16370.1 28.785 535 337 12 8 524 1 509 3.00e-65 221
Msa0334730 AT3G13050.2 27.296 392 244 11 126 484 64 447 4.36e-21 97.1
Msa0334730 AT3G13050.4 27.296 392 244 11 126 484 64 447 4.36e-21 97.1
Msa0334730 AT3G13050.1 27.296 392 244 11 126 484 64 447 4.36e-21 97.1
Msa0334730 AT3G13050.3 27.296 392 244 11 126 484 64 447 4.36e-21 97.1
Msa0334730 AT1G20840.2 26.721 247 168 5 88 325 3 245 2.08e-15 79.7
Msa0334730 AT1G20840.1 26.721 247 168 5 88 325 3 245 2.08e-15 79.7
Msa0334730 AT2G16130.1 23.517 472 300 19 92 518 29 484 9.96e-13 70.9
Msa0334730 AT3G05400.1 27.295 403 252 18 134 518 75 454 6.17e-12 68.2
Msa0334730 AT3G05400.2 26.346 353 222 15 183 518 103 434 4.32e-11 65.5
Msa0334730 AT3G51490.2 33.005 203 112 11 127 315 44 236 7.97e-11 65.1
Msa0334730 AT3G51490.1 33.005 203 112 11 127 315 44 236 8.14e-11 65.1

Find 162 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCATTCTCCCCAAATTAT+TGG 0.154158 2_4:+53436617 Msa0334730:CDS
ATTTCAGGAGCTGGAGTATT+TGG 0.180190 2_4:+53436514 Msa0334730:intron
AGGACATAGATCCAATAATT+TGG 0.208242 2_4:-53436628 None:intergenic
AACTACAAAACCCATGTATA+AGG 0.213512 2_4:-53437865 None:intergenic
CCTGCCATGCCGCGCTTTGA+TGG 0.238418 2_4:-53436727 None:intergenic
GATTTGTGGTGATAAGTTTA+AGG 0.239703 2_4:+53432608 Msa0334730:CDS
AATAACCTAATACGTGTAAC+TGG 0.261216 2_4:-53437120 None:intergenic
GGACATAGATCCAATAATTT+GGG 0.296130 2_4:-53436627 None:intergenic
GCTACCCAGTTACACGTATT+AGG 0.308068 2_4:+53437115 Msa0334730:CDS
TTCTTTGCTGGGTGTATGAT+TGG 0.316203 2_4:+53432654 Msa0334730:CDS
GCAGCCAAAGATGGTGTTTA+GGG 0.321201 2_4:-53436590 None:intergenic
TTAGCCTCGGTGGTGTATTA+TGG 0.322442 2_4:+53437165 Msa0334730:CDS
CCTCTTTATGATACATTCAA+TGG 0.327419 2_4:+53437651 Msa0334730:CDS
GAGAAATACTGTGGTGAGTT+TGG 0.337591 2_4:+53432372 Msa0334730:CDS
TGTGCCCTAAACACCATCTT+TGG 0.339261 2_4:+53436586 Msa0334730:CDS
GGAAGGAAACCATTGACAAT+AGG 0.348038 2_4:+53437300 Msa0334730:CDS
TTAGGTAGTTGGATGCCTTT+TGG 0.348935 2_4:+53437561 Msa0334730:CDS
AATATTCAACTCTCTAGAAT+TGG 0.350798 2_4:-53437796 None:intergenic
AACAAGTCTTGCTTGGGCTT+TGG 0.354856 2_4:+53432422 Msa0334730:CDS
AGCAGCCAAAGATGGTGTTT+AGG 0.382645 2_4:-53436591 None:intergenic
TGCGACACAAGCCGCGCAAA+TGG 0.384008 2_4:+53437509 Msa0334730:CDS
CTGCCATGCCGCGCTTTGAT+GGG 0.387883 2_4:-53436726 None:intergenic
TTATGATACATTCAATGGAT+TGG 0.388271 2_4:+53437656 Msa0334730:CDS
CACGATAACCGCAGTGTTGT+TGG 0.389645 2_4:+53437269 Msa0334730:CDS
CGGTGGAAGTGTCTGCGATA+TGG 0.391242 2_4:+53432524 Msa0334730:CDS
CCTTCAACACACTTCCAATC+AGG 0.398321 2_4:-53432486 None:intergenic
CCATCAAAGCGCGGCATGGC+AGG 0.400917 2_4:+53436727 Msa0334730:CDS
GCGACACAAGCCGCGCAAAT+GGG 0.403807 2_4:+53437510 Msa0334730:CDS
ACATACATGTTCTTTGATGA+TGG 0.406333 2_4:+53437742 Msa0334730:three_prime_UTR
CTTTGATGGGCCAATGGGCT+CGG 0.408209 2_4:-53436713 None:intergenic
GCCGCGCTTTGATGGGCCAA+TGG 0.408688 2_4:-53436719 None:intergenic
CCGCGCTTTGATGGGCCAAT+GGG 0.409887 2_4:-53436718 None:intergenic
CACATTGTCCCTATTGTCAA+TGG 0.410231 2_4:-53437309 None:intergenic
CTCCTCACCGGTTTCAGCAC+TGG 0.414633 2_4:+53436658 Msa0334730:CDS
AGATTCATCTCTAGGAAGAA+AGG 0.419211 2_4:+53436546 Msa0334730:CDS
GAAGGAAACCATTGACAATA+GGG 0.420926 2_4:+53437301 Msa0334730:CDS
GCAGTGTTGTTGGATAGATT+TGG 0.422354 2_4:+53437279 Msa0334730:CDS
TTCTTTGATGATGGAAATGT+TGG 0.422815 2_4:+53437751 Msa0334730:three_prime_UTR
CATTCTAACAAGTCTTGCTT+GGG 0.426878 2_4:+53432416 Msa0334730:CDS
TCATTCTAACAAGTCTTGCT+TGG 0.434726 2_4:+53432415 Msa0334730:CDS
TGTAGAGTGTGCGCCATGTT+TGG 0.435538 2_4:-53436813 None:intergenic
GCCGACATCTCGGTTGTGTT+TGG 0.438376 2_4:-53432249 None:intergenic
ATAGGGACAATGTGGTTTAG+TGG 0.438435 2_4:+53437318 Msa0334730:CDS
GTCCTCCTCCGCCTCCTCAC+CGG 0.446182 2_4:+53436646 Msa0334730:CDS
AGCCTACCCATCAAAACAAT+TGG 0.446625 2_4:-53437972 None:intergenic
TGCTGAAACCGGTGAGGAGG+CGG 0.447621 2_4:-53436654 None:intergenic
TTGGAGTGTTTGCGGTATGC+GGG 0.448332 2_4:+53437580 Msa0334730:CDS
AACCGGTGAGGAGGCGGAGG+AGG 0.451949 2_4:-53436648 None:intergenic
GAAGGACAAGGATTATGTAT+AGG 0.454079 2_4:-53436858 None:intergenic
GGTTTCAGCACTGGCGGTGT+TGG 0.461729 2_4:+53436667 Msa0334730:CDS
TCTTGGAGACTCGGAGATGA+AGG 0.462095 2_4:-53436881 None:intergenic
GGTGTGGAAAGTAATTAAAT+TGG 0.463019 2_4:+53437380 Msa0334730:CDS
GCTCGTTGCAAACATTAGAT+TGG 0.464117 2_4:+53437838 Msa0334730:three_prime_UTR
TGTGGTGATAAGTTTAAGGT+TGG 0.464383 2_4:+53432612 Msa0334730:CDS
ACTACAAAACCCATGTATAA+GGG 0.465691 2_4:-53437864 None:intergenic
GTCCTTGCCACCGAGCCCAT+TGG 0.465782 2_4:+53436703 Msa0334730:CDS
GGCCAATGGGCTCGGTGGCA+AGG 0.468558 2_4:-53436705 None:intergenic
TCTGAATGGAGTTTGATTTG+TGG 0.472369 2_4:+53432594 Msa0334730:CDS
CTACCTAAAACGACCACAAA+AGG 0.476689 2_4:-53437546 None:intergenic
TGGCGTCGTCGTCGTGGCAG+TGG 0.477858 2_4:+53432544 Msa0334730:CDS
TATGTATAGGATGGAAGGGA+TGG 0.482070 2_4:-53436845 None:intergenic
AACACCGCCAGTGCTGAAAC+CGG 0.490126 2_4:-53436665 None:intergenic
GCCGCTCGAGAAGAAGTAGA+AGG 0.491146 2_4:-53436758 None:intergenic
CACCTTTCAGATTCATCTCT+AGG 0.492958 2_4:+53436538 Msa0334730:CDS
CCTGATTGGAAGTGTGTTGA+AGG 0.493245 2_4:+53432486 Msa0334730:CDS
TCATGTAGAGGTTAGTTTCG+AGG 0.495796 2_4:-53437209 None:intergenic
ACTGTGGTGAGTTTGGAAAA+TGG 0.497363 2_4:+53432379 Msa0334730:CDS
TGATACATTCAATGGATTGG+AGG 0.497747 2_4:+53437659 Msa0334730:CDS
GACAAGGATTATGTATAGGA+TGG 0.502450 2_4:-53436854 None:intergenic
GTGGTAAGGAACGCAGCACT+TGG 0.502674 2_4:+53437483 Msa0334730:CDS
AGTGCAAGGACAACTCCGTC+TGG 0.504734 2_4:-53436982 None:intergenic
CGTTTATTCTTCCTCGAACA+AGG 0.508955 2_4:-53436909 None:intergenic
TTTGCTTTGGAAACGTGGGC+TGG 0.509358 2_4:-53432221 None:intergenic
TTGCTGATAGGGAACCTGAT+TGG 0.509884 2_4:+53432472 Msa0334730:CDS
GATTCATCTCTAGGAAGAAA+GGG 0.510137 2_4:+53436547 Msa0334730:CDS
ATGCTTCTACGGTGTCTGAA+TGG 0.510229 2_4:+53432580 Msa0334730:CDS
CACATCGGAGTTGTTTCCTA+CGG 0.511229 2_4:+53437461 Msa0334730:CDS
TTTGATGATGGTGGTAAGAT+CGG 0.512146 2_4:-53432306 None:intergenic
TCCACAATTGCTTCTTACAA+TGG 0.514540 2_4:+53436949 Msa0334730:CDS
TTTGGAGTGTTTGCGGTATG+CGG 0.515376 2_4:+53437579 Msa0334730:CDS
AGTTGTTTCCTACGGTGGTA+AGG 0.516187 2_4:+53437469 Msa0334730:CDS
TGCTGTTAAGCAGCCAAAGA+TGG 0.518000 2_4:-53436599 None:intergenic
AGCTCTTAACTTCTTAGCCT+CGG 0.519099 2_4:+53437152 Msa0334730:CDS
CAGTTGAAAACAATGATTCA+AGG 0.519123 2_4:+53437934 Msa0334730:three_prime_UTR
AGGATTATGTATAGGATGGA+AGG 0.525162 2_4:-53436850 None:intergenic
CCAAGATGGTACCTTGTTCG+AGG 0.526256 2_4:+53436898 Msa0334730:CDS
CATACCGCAAACACTCCAAA+AGG 0.527420 2_4:-53437576 None:intergenic
AGAGGCATATTCAGTGTCTC+CGG 0.527501 2_4:-53437633 None:intergenic
AGCGGCATAGCAATTCTCTC+TGG 0.530350 2_4:+53436775 Msa0334730:CDS
ACATTCAATGGATTGGAGGC+TGG 0.531661 2_4:+53437663 Msa0334730:CDS
TGAAACCGGTGAGGAGGCGG+AGG 0.534026 2_4:-53436651 None:intergenic
CGCCGGAAAAGATGCTTCTA+CGG 0.535705 2_4:+53432569 Msa0334730:CDS
TGAGTTGAGATCATCGGAAA+GGG 0.537027 2_4:-53432283 None:intergenic
CCATTGAATGTATCATAAAG+AGG 0.538780 2_4:-53437651 None:intergenic
CGACACAAGCCGCGCAAATG+GGG 0.539219 2_4:+53437511 Msa0334730:CDS
GTATAGGATGGAAGGGATGG+AGG 0.539534 2_4:-53436842 None:intergenic
TTATGGGTAATGTAGGGGTG+TGG 0.539802 2_4:+53437364 Msa0334730:CDS
TTGGAAGTGTGTTGAAGGTA+TGG 0.540165 2_4:+53432491 Msa0334730:CDS
TCGTCGTGGCAGTGGATCGC+CGG 0.542396 2_4:+53432552 Msa0334730:CDS
AGATTGGCGACCCTTATACA+TGG 0.545023 2_4:+53437854 Msa0334730:three_prime_UTR
GATTGGCGACCCTTATACAT+GGG 0.545465 2_4:+53437855 Msa0334730:three_prime_UTR
TCCATTGTAAGAAGCAATTG+TGG 0.548608 2_4:-53436950 None:intergenic
CCTCGAACAAGGTACCATCT+TGG 0.549114 2_4:-53436898 None:intergenic
TTAGGGATATTCGGAATGGC+GGG 0.549232 2_4:+53437414 Msa0334730:CDS
ACCTTCTACTTCTTCTCGAG+CGG 0.553087 2_4:+53436757 Msa0334730:CDS
TTAGAAGCACATTCATGTAG+AGG 0.557548 2_4:-53437221 None:intergenic
TCGCCTACACCTTCCAAACA+TGG 0.558270 2_4:+53436800 Msa0334730:CDS
GAAAACAAGGATGCACAAGT+TGG 0.558702 2_4:+53437072 Msa0334730:CDS
ATACCTCTTCATCGAGTGCA+AGG 0.561508 2_4:-53436996 None:intergenic
GAAGGTATGGAGTGTTCCGC+CGG 0.566826 2_4:+53432504 Msa0334730:CDS
GTAGCGAATCACATCAATGA+TGG 0.567809 2_4:-53437097 None:intergenic
CAATCATATATATATAAGAC+TGG 0.568156 2_4:-53432183 None:intergenic
TGGCCCATCAAAGCGCGGCA+TGG 0.569359 2_4:+53436723 Msa0334730:CDS
ACTGCGGTTATCGTGAATGC+TGG 0.569724 2_4:-53437261 None:intergenic
GATCGGTGAGTTGAGATCAT+CGG 0.571951 2_4:-53432289 None:intergenic
TGTCCTTGCACTCGATGAAG+AGG 0.575131 2_4:+53436993 Msa0334730:CDS
GGATTATGTATAGGATGGAA+GGG 0.576612 2_4:-53436849 None:intergenic
CGGAGATGAAGGGAAGGACA+AGG 0.580732 2_4:-53436870 None:intergenic
CAGTGCTGAAACCGGTGAGG+AGG 0.593307 2_4:-53436657 None:intergenic
AACAAACAACTATCTAGCAA+TGG 0.595173 2_4:-53437698 None:intergenic
TGAGAATGTAGCCGACATCT+CGG 0.596577 2_4:-53432259 None:intergenic
AAGGTACCATCTTGGAGACT+CGG 0.597332 2_4:-53436890 None:intergenic
TTTGTTGTTTATTTACACAT+CGG 0.598539 2_4:+53437446 Msa0334730:CDS
TGTTGTTGGATAGATTTGGA+AGG 0.598953 2_4:+53437283 Msa0334730:CDS
CTTGGAGACTCGGAGATGAA+GGG 0.599014 2_4:-53436880 None:intergenic
ACCAAACACAACCGAGATGT+CGG 0.600241 2_4:+53432248 Msa0334730:exon
CAAGGACAACTCCGTCTGGA+AGG 0.601215 2_4:-53436978 None:intergenic
TGGCAAGGACGAAGGCGCAA+AGG 0.601626 2_4:-53436690 None:intergenic
TCTTTGATGATGGAAATGTT+GGG 0.604202 2_4:+53437752 Msa0334730:three_prime_UTR
AATTAGCTACGTGGAAAACA+AGG 0.604480 2_4:+53437059 Msa0334730:CDS
TTTAGGGATATTCGGAATGG+CGG 0.605409 2_4:+53437413 Msa0334730:CDS
GTGAGTTGAGATCATCGGAA+AGG 0.608122 2_4:-53432284 None:intergenic
GGTATGGAGTGTTCCGCCGG+TGG 0.609145 2_4:+53432507 Msa0334730:CDS
CTCACCGGTTTCAGCACTGG+CGG 0.612581 2_4:+53436661 Msa0334730:CDS
TCATCTCCGAGTCTCCAAGA+TGG 0.613018 2_4:+53436884 Msa0334730:CDS
GAGTGTGCGCCATGTTTGGA+AGG 0.613444 2_4:-53436809 None:intergenic
TTCCTAGAGATGAATCTGAA+AGG 0.614796 2_4:-53436540 None:intergenic
CCCATTGGCCCATCAAAGCG+CGG 0.615135 2_4:+53436718 Msa0334730:CDS
GACACAAGCCGCGCAAATGG+GGG 0.617488 2_4:+53437512 Msa0334730:CDS
GAGACTCGGAGATGAAGGGA+AGG 0.622437 2_4:-53436876 None:intergenic
GGGCTCGGTGGCAAGGACGA+AGG 0.624495 2_4:-53436698 None:intergenic
CATGAATGTGCTTCTAAATG+CGG 0.626439 2_4:+53437227 Msa0334730:CDS
ATCGCAGACACTTCCACCGG+CGG 0.632796 2_4:-53432520 None:intergenic
GCTCGAGAAGAAGTAGAAGG+TGG 0.635888 2_4:-53436755 None:intergenic
ATAACCTAATACGTGTAACT+GGG 0.636372 2_4:-53437119 None:intergenic
ATCGGAGTTGTTTCCTACGG+TGG 0.637558 2_4:+53437464 Msa0334730:CDS
CATTGACAATAGGGACAATG+TGG 0.638705 2_4:+53437310 Msa0334730:CDS
TGGTAAGGAACGCAGCACTT+GGG 0.639237 2_4:+53437484 Msa0334730:CDS
GCGATATGGCGTCGTCGTCG+TGG 0.639636 2_4:+53432538 Msa0334730:CDS
TGATGGGCCAATGGGCTCGG+TGG 0.646864 2_4:-53436710 None:intergenic
GCTGCGTTCCTTACCACCGT+AGG 0.647891 2_4:-53437477 None:intergenic
GACATAGATCCAATAATTTG+GGG 0.648419 2_4:-53436626 None:intergenic
CATATCGCAGACACTTCCAC+CGG 0.653767 2_4:-53432523 None:intergenic
AATGGAAAACACCTTCCAGA+CGG 0.661052 2_4:+53436967 Msa0334730:CDS
CGCCAGTGCTGAAACCGGTG+AGG 0.675236 2_4:-53436660 None:intergenic
GCGCCATGTTTGGAAGGTGT+AGG 0.682350 2_4:-53436803 None:intergenic
TCTTAACTTCTTAGCCTCGG+TGG 0.693792 2_4:+53437155 Msa0334730:CDS
AAAGTAATTAAATTGGTGTG+TGG 0.701059 2_4:+53437387 Msa0334730:CDS
ATACAACCTAATTAGCTACG+TGG 0.724539 2_4:+53437050 Msa0334730:CDS
AAATCTATCCAACAACACTG+CGG 0.770070 2_4:-53437277 None:intergenic
GAGATGCTTGAGAAATACTG+TGG 0.771565 2_4:+53432363 Msa0334730:CDS
AAGACCATAATACACCACCG+AGG 0.840643 2_4:-53437169 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATAATTAAATTTTGCA+AGG + chr2_4:53433683-53433702 Msa0334730:intron 10.0%
!!! TAAATAATTAAATTTTGCAA+GGG + chr2_4:53433684-53433703 Msa0334730:intron 10.0%
!! CTAATTTATATAAGTAAAAA+AGG - chr2_4:53434044-53434063 None:intergenic 10.0%
!!! TAAGAAGTATATATAATTTA+AGG - chr2_4:53435906-53435925 None:intergenic 10.0%
!!! TTATTAATTTATGATTTTCT+TGG + chr2_4:53436262-53436281 Msa0334730:intron 10.0%
!!! TATTAATTTATGATTTTCTT+GGG + chr2_4:53436263-53436282 Msa0334730:intron 10.0%
!!! TCTAAAATAATAAATTTATC+CGG - chr2_4:53436377-53436396 None:intergenic 10.0%
!!! TGATTATTGTTGTATTTTAT+TGG + chr2_4:53432720-53432739 Msa0334730:intron 15.0%
!!! GATTATTGTTGTATTTTATT+GGG + chr2_4:53432721-53432740 Msa0334730:intron 15.0%
!!! ATTATTGTTGTATTTTATTG+GGG + chr2_4:53432722-53432741 Msa0334730:intron 15.0%
!! AAAAGATAAAATGAATGAAA+TGG + chr2_4:53432771-53432790 Msa0334730:intron 15.0%
!! CAAATATAGATTCAATAAAA+AGG - chr2_4:53433145-53433164 None:intergenic 15.0%
!!! TTCTTATTCAATTTCTTTTA+GGG + chr2_4:53433185-53433204 Msa0334730:intron 15.0%
!! TATGAGTAATAAAGATATAT+TGG + chr2_4:53433515-53433534 Msa0334730:intron 15.0%
!! TATGAGTAATAAAGATATAT+TGG + chr2_4:53433515-53433534 Msa0334730:intron 15.0%
!! CAATTATTATAATTTATCGT+TGG + chr2_4:53433928-53433947 Msa0334730:intron 15.0%
!! ATTAATCACTATATAGTATA+TGG - chr2_4:53434994-53435013 None:intergenic 15.0%
!!! TTGTTACAAGTTTTATATTT+TGG + chr2_4:53435233-53435252 Msa0334730:intron 15.0%
!!! TCTAATACTTACTATTTTAT+TGG - chr2_4:53435653-53435672 None:intergenic 15.0%
!! TCTAAATTAATAAATTTCTC+CGG - chr2_4:53435978-53435997 None:intergenic 15.0%
!!! AGTTTTTCAATTTTTTACAT+TGG + chr2_4:53436339-53436358 Msa0334730:intron 15.0%
!!! AAACTCTTTAATTTAATACT+CGG - chr2_4:53436415-53436434 None:intergenic 15.0%
!! CAATCATATATATATAAGAC+TGG - chr2_4:53432186-53432205 None:intergenic 20.0%
!!! CTTCTTATTCAATTTCTTTT+AGG + chr2_4:53433184-53433203 Msa0334730:intron 20.0%
!!! ATATTGACAATTGATAACTT+TGG - chr2_4:53433425-53433444 None:intergenic 20.0%
!! ATAATTTCATAACATTGTGA+TGG + chr2_4:53433472-53433491 Msa0334730:intron 20.0%
!! CATAAAATAATTTACGTTTG+TGG - chr2_4:53433499-53433518 None:intergenic 20.0%
!! CTTATTCATTAAGTATTATG+AGG - chr2_4:53433555-53433574 None:intergenic 20.0%
!! CTCATAATACTTAATGAATA+AGG + chr2_4:53433553-53433572 Msa0334730:intron 20.0%
!! AATAAGGCTATAAAAATAAG+TGG + chr2_4:53433569-53433588 Msa0334730:intron 20.0%
!! TGATGTAGGTATAAAAATAA+GGG - chr2_4:53433786-53433805 None:intergenic 20.0%
!! TTGATGTAGGTATAAAAATA+AGG - chr2_4:53433787-53433806 None:intergenic 20.0%
!!! TATTTTTATACCTACATCAA+AGG + chr2_4:53433787-53433806 Msa0334730:intron 20.0%
!!! AGTATTCATAATTTTCTCTA+AGG + chr2_4:53434360-53434379 Msa0334730:intron 20.0%
!!! TAGAAAAGATTTTCTAGAAA+TGG - chr2_4:53434576-53434595 None:intergenic 20.0%
!!! ACATCAAATTTTTGTGATAA+GGG + chr2_4:53434612-53434631 Msa0334730:intron 20.0%
!! GATATATACAAACAGAAATA+TGG - chr2_4:53434911-53434930 None:intergenic 20.0%
!!! CTATATAGTGATTAATGTTT+TGG + chr2_4:53434998-53435017 Msa0334730:intron 20.0%
!!! TTAATGTTTTGGTTTTAGAT+TGG + chr2_4:53435009-53435028 Msa0334730:intron 20.0%
!!! TAATGTTTTGGTTTTAGATT+GGG + chr2_4:53435010-53435029 Msa0334730:intron 20.0%
!! TAAAACTTTAGTAAAGAAAG+AGG - chr2_4:53435067-53435086 None:intergenic 20.0%
!! ACCAATATTGTAGAAAATAT+AGG + chr2_4:53435387-53435406 Msa0334730:intron 20.0%
!!! ACCTATATTTTCTACAATAT+TGG - chr2_4:53435391-53435410 None:intergenic 20.0%
!! CACTTTATAGTCTTTATTAT+CGG + chr2_4:53435489-53435508 Msa0334730:intron 20.0%
!! CTCTATAAATTAATAATGTC+AGG + chr2_4:53435951-53435970 Msa0334730:intron 20.0%
!!! TTTGTTGTTTATTTACACAT+CGG + chr2_4:53437446-53437465 Msa0334730:CDS 20.0%
!!! TCATAATTCTTTTTGACATT+TGG + chr2_4:53437903-53437922 Msa0334730:three_prime_UTR 20.0%
!!! TTTTGTGAACAAAATGGATT+TGG - chr2_4:53432155-53432174 None:intergenic 25.0%
!! CAAGAATTTTGTGAACAAAA+TGG - chr2_4:53432161-53432180 None:intergenic 25.0%
!! CATTTTGTTCACAAAATTCT+TGG + chr2_4:53432159-53432178 Msa0334730:five_prime_UTR 25.0%
!!! CTATAGCTCTAAAGATATAT+TGG - chr2_4:53432829-53432848 None:intergenic 25.0%
! TTCAATAAAAAGGACTACTT+TGG - chr2_4:53433135-53433154 None:intergenic 25.0%
! AGTATAGTTAATAGAACAAC+TGG - chr2_4:53433219-53433238 None:intergenic 25.0%
!! GAAAATGCAAAATTTTCATG+AGG + chr2_4:53433858-53433877 Msa0334730:intron 25.0%
! ATTATAATTTATCGTTGGTG+AGG + chr2_4:53433933-53433952 Msa0334730:intron 25.0%
! ATAAACTTATAGCCCATATA+AGG - chr2_4:53434190-53434209 None:intergenic 25.0%
!! GACATCAAATTTTTGTGATA+AGG + chr2_4:53434611-53434630 Msa0334730:intron 25.0%
! TACTAATAAAACAGTTACGT+AGG + chr2_4:53434868-53434887 Msa0334730:intron 25.0%
! AGAAATATGGAAATACACAA+TGG - chr2_4:53434898-53434917 None:intergenic 25.0%
!!! TATTTTGGATAGAAAAATGC+TGG + chr2_4:53435248-53435267 Msa0334730:intron 25.0%
!!! GTGGGTTATATTAGTTTTTA+GGG + chr2_4:53435270-53435289 Msa0334730:intron 25.0%
! TTCAAAATAGACAGATTGAT+TGG - chr2_4:53435349-53435368 None:intergenic 25.0%
! CTATAAAGTGAAACATACAT+TGG - chr2_4:53435479-53435498 None:intergenic 25.0%
! TTCTTGATATTTCTCTTTGT+TGG - chr2_4:53435516-53435535 None:intergenic 25.0%
!! GAGAATGTTGATCATTTTAT+TGG - chr2_4:53435730-53435749 None:intergenic 25.0%
! TGACGTAAATTGATTGATAT+TGG - chr2_4:53435832-53435851 None:intergenic 25.0%
! TAAATTAATAATGTCAGGAC+CGG + chr2_4:53435956-53435975 Msa0334730:intron 25.0%
!!! GATTTTTATGTTGTCATTTC+AGG + chr2_4:53436499-53436518 Msa0334730:intron 25.0%
! AAAGTAATTAAATTGGTGTG+TGG + chr2_4:53437387-53437406 Msa0334730:CDS 25.0%
! TTATGATACATTCAATGGAT+TGG + chr2_4:53437656-53437675 Msa0334730:CDS 25.0%
!!! AATATTCAACTCTCTAGAAT+TGG - chr2_4:53437799-53437818 None:intergenic 25.0%
!!! GATTTTTTCAGTTTCATTGG+TGG - chr2_4:53432334-53432353 None:intergenic 30.0%
!!! GCAGATTTTTTCAGTTTCAT+TGG - chr2_4:53432337-53432356 None:intergenic 30.0%
! TTTGGAAGCTTTTCATACTA+TGG + chr2_4:53432440-53432459 Msa0334730:CDS 30.0%
! TGGTTATGATTTTTGCTGAT+AGG + chr2_4:53432460-53432479 Msa0334730:CDS 30.0%
! GGTTATGATTTTTGCTGATA+GGG + chr2_4:53432461-53432480 Msa0334730:CDS 30.0%
GATTTGTGGTGATAAGTTTA+AGG + chr2_4:53432608-53432627 Msa0334730:CDS 30.0%
!! AATGGAGAGAAAGTATTATG+AGG + chr2_4:53432789-53432808 Msa0334730:intron 30.0%
TATAAGACCAATCATCAAGT+TGG + chr2_4:53432868-53432887 Msa0334730:intron 30.0%
ATAAGACCAATCATCAAGTT+GGG + chr2_4:53432869-53432888 Msa0334730:intron 30.0%
ATATCAACCAACTATTTGCA+CGG + chr2_4:53433441-53433460 Msa0334730:intron 30.0%
! TTTTGCAAGGGTAATTTATC+AGG + chr2_4:53433696-53433715 Msa0334730:intron 30.0%
TTATCAGGATTAACGATTAC+AGG + chr2_4:53433711-53433730 Msa0334730:intron 30.0%
TATCAGGATTAACGATTACA+GGG + chr2_4:53433712-53433731 Msa0334730:intron 30.0%
TGAACTTGAGAATCATCTAT+TGG - chr2_4:53433974-53433993 None:intergenic 30.0%
! TCGAGATTTTGTCCTTATAT+GGG + chr2_4:53434175-53434194 Msa0334730:intron 30.0%
TTTGAAAAGTTAGCTGTGAA+TGG + chr2_4:53434310-53434329 Msa0334730:intron 30.0%
TAAGAAACCTGAAAGAGAAA+AGG + chr2_4:53434664-53434683 Msa0334730:intron 30.0%
! TAATTAGTTTACCAGTTCCA+CGG + chr2_4:53434753-53434772 Msa0334730:intron 30.0%
!!! GGTGGGTTATATTAGTTTTT+AGG + chr2_4:53435269-53435288 Msa0334730:intron 30.0%
!!! TAGTTTTTAGGGTTGAACTT+TGG + chr2_4:53435281-53435300 Msa0334730:intron 30.0%
ACACTAAAGAACTAACTAGA+AGG - chr2_4:53435311-53435330 None:intergenic 30.0%
GTAGAAAATATAGGTTGTAG+TGG + chr2_4:53435396-53435415 Msa0334730:intron 30.0%
ACTGTACATACCAAACAAAA+AGG + chr2_4:53436058-53436077 Msa0334730:intron 30.0%
!! GACTAATTTGCCTTTTTGTT+TGG - chr2_4:53436071-53436090 None:intergenic 30.0%
GTACAGTAAATGTAAACAAG+AGG + chr2_4:53436189-53436208 Msa0334730:intron 30.0%
TTGGGACCGAAAATTATAAA+GGG + chr2_4:53436281-53436300 Msa0334730:intron 30.0%
! GGAGATCCCTTTATAATTTT+CGG - chr2_4:53436290-53436309 None:intergenic 30.0%
GACATAGATCCAATAATTTG+GGG - chr2_4:53436629-53436648 None:intergenic 30.0%
GGACATAGATCCAATAATTT+GGG - chr2_4:53436630-53436649 None:intergenic 30.0%
AGGACATAGATCCAATAATT+TGG - chr2_4:53436631-53436650 None:intergenic 30.0%
GGTGTGGAAAGTAATTAAAT+TGG + chr2_4:53437380-53437399 Msa0334730:CDS 30.0%
CCATTGAATGTATCATAAAG+AGG - chr2_4:53437654-53437673 None:intergenic 30.0%
CCTCTTTATGATACATTCAA+TGG + chr2_4:53437651-53437670 Msa0334730:CDS 30.0%
AACAAACAACTATCTAGCAA+TGG - chr2_4:53437701-53437720 None:intergenic 30.0%
ACATACATGTTCTTTGATGA+TGG + chr2_4:53437742-53437761 Msa0334730:three_prime_UTR 30.0%
!! TTCTTTGATGATGGAAATGT+TGG + chr2_4:53437751-53437770 Msa0334730:three_prime_UTR 30.0%
!! TCTTTGATGATGGAAATGTT+GGG + chr2_4:53437752-53437771 Msa0334730:three_prime_UTR 30.0%
ACTACAAAACCCATGTATAA+GGG - chr2_4:53437867-53437886 None:intergenic 30.0%
AACTACAAAACCCATGTATA+AGG - chr2_4:53437868-53437887 None:intergenic 30.0%
!!! GTTTTGTAGTTTTGTTGTCT+CGG + chr2_4:53437877-53437896 Msa0334730:three_prime_UTR 30.0%
!!! TTTTGTAGTTTTGTTGTCTC+GGG + chr2_4:53437878-53437897 Msa0334730:three_prime_UTR 30.0%
CAGTTGAAAACAATGATTCA+AGG + chr2_4:53437934-53437953 Msa0334730:three_prime_UTR 30.0%
!!! AAATGCACCAATTGTTTTGA+TGG + chr2_4:53437965-53437984 Msa0334730:three_prime_UTR 30.0%
!!! AATGCACCAATTGTTTTGAT+GGG + chr2_4:53437966-53437985 Msa0334730:three_prime_UTR 30.0%
!!! GGCTTATTTTGTCAAAAAAG+TGG + chr2_4:53437991-53438010 Msa0334730:three_prime_UTR 30.0%
!! TTTGATGATGGTGGTAAGAT+CGG - chr2_4:53432309-53432328 None:intergenic 35.0%
!! TCATTGGTGGTTTTTGATGA+TGG - chr2_4:53432321-53432340 None:intergenic 35.0%
TCATTCTAACAAGTCTTGCT+TGG + chr2_4:53432415-53432434 Msa0334730:CDS 35.0%
CATTCTAACAAGTCTTGCTT+GGG + chr2_4:53432416-53432435 Msa0334730:CDS 35.0%
!! TCTGAATGGAGTTTGATTTG+TGG + chr2_4:53432594-53432613 Msa0334730:CDS 35.0%
! TGTGGTGATAAGTTTAAGGT+TGG + chr2_4:53432612-53432631 Msa0334730:CDS 35.0%
! TTCAAGCACTTTTCTTTGCT+GGG + chr2_4:53432643-53432662 Msa0334730:CDS 35.0%
!! TTGATGATTGGTCTTATAGC+AGG - chr2_4:53432866-53432885 None:intergenic 35.0%
!!! GATTCCACTGACTTTGATTT+TGG + chr2_4:53433271-53433290 Msa0334730:intron 35.0%
ATCACCAAAATCAAAGTCAG+TGG - chr2_4:53433278-53433297 None:intergenic 35.0%
GCTGTCATTAAGTAGGTTAA+GGG + chr2_4:53433652-53433671 Msa0334730:intron 35.0%
TTTAAATGACCCCTAATTGC+AGG + chr2_4:53433742-53433761 Msa0334730:intron 35.0%
TTAAATGACCCCTAATTGCA+GGG + chr2_4:53433743-53433762 Msa0334730:intron 35.0%
TGATGAATGACCTTTGATGT+AGG - chr2_4:53433800-53433819 None:intergenic 35.0%
! CAATGTCGTTTGTTGAAGAA+CGG + chr2_4:53434102-53434121 Msa0334730:intron 35.0%
! CTCGAGATTTTGTCCTTATA+TGG + chr2_4:53434174-53434193 Msa0334730:intron 35.0%
!!! TTTTCTAGAAATGGACTGTG+TGG - chr2_4:53434567-53434586 None:intergenic 35.0%
! ATAAAGTGAAAGGTATGCTG+TGG - chr2_4:53434691-53434710 None:intergenic 35.0%
GACGACAAAGATAAAGTGAA+AGG - chr2_4:53434701-53434720 None:intergenic 35.0%
! AATTAGTTTACCAGTTCCAC+GGG + chr2_4:53434754-53434773 Msa0334730:intron 35.0%
!! CCACTAGTTCTTGGAAATTT+TGG - chr2_4:53434794-53434813 None:intergenic 35.0%
CCAAAATTTCCAAGAACTAG+TGG + chr2_4:53434791-53434810 Msa0334730:intron 35.0%
TATCCATGAAACTTGTGTGT+CGG + chr2_4:53434927-53434946 Msa0334730:intron 35.0%
ACTTTAGTAAAGAAAGAGGC+AGG - chr2_4:53435063-53435082 None:intergenic 35.0%
TTTGGATAGAAAAATGCTGG+TGG + chr2_4:53435251-53435270 Msa0334730:intron 35.0%
TTGGATAGAAAAATGCTGGT+GGG + chr2_4:53435252-53435271 Msa0334730:intron 35.0%
AGAGTGAAGGAATCTTTCTT+AGG + chr2_4:53435439-53435458 Msa0334730:intron 35.0%
GAGTGAAGGAATCTTTCTTA+GGG + chr2_4:53435440-53435459 Msa0334730:intron 35.0%
AGTGAAGGAATCTTTCTTAG+GGG + chr2_4:53435441-53435460 Msa0334730:intron 35.0%
CATGTAGTAGCAAATTGCTT+AGG - chr2_4:53435789-53435808 None:intergenic 35.0%
ACTACTGTGATCATATGCAT+TGG + chr2_4:53436145-53436164 Msa0334730:intron 35.0%
CTTGGGACCGAAAATTATAA+AGG + chr2_4:53436280-53436299 Msa0334730:intron 35.0%
!!! TTTTTTACATTGGCCCAAGT+TGG + chr2_4:53436349-53436368 Msa0334730:intron 35.0%
! TTTTTACATTGGCCCAAGTT+GGG + chr2_4:53436350-53436369 Msa0334730:intron 35.0%
TTCCTAGAGATGAATCTGAA+AGG - chr2_4:53436543-53436562 None:intergenic 35.0%
! AGATTCATCTCTAGGAAGAA+AGG + chr2_4:53436546-53436565 Msa0334730:CDS 35.0%
! GATTCATCTCTAGGAAGAAA+GGG + chr2_4:53436547-53436566 Msa0334730:CDS 35.0%
GGATTATGTATAGGATGGAA+GGG - chr2_4:53436852-53436871 None:intergenic 35.0%
AGGATTATGTATAGGATGGA+AGG - chr2_4:53436853-53436872 None:intergenic 35.0%
GACAAGGATTATGTATAGGA+TGG - chr2_4:53436857-53436876 None:intergenic 35.0%
GAAGGACAAGGATTATGTAT+AGG - chr2_4:53436861-53436880 None:intergenic 35.0%
TCCACAATTGCTTCTTACAA+TGG + chr2_4:53436949-53436968 Msa0334730:CDS 35.0%
TCCATTGTAAGAAGCAATTG+TGG - chr2_4:53436953-53436972 None:intergenic 35.0%
ATACAACCTAATTAGCTACG+TGG + chr2_4:53437050-53437069 Msa0334730:CDS 35.0%
! TGTTTTCCACGTAGCTAATT+AGG - chr2_4:53437059-53437078 None:intergenic 35.0%
AATTAGCTACGTGGAAAACA+AGG + chr2_4:53437059-53437078 Msa0334730:CDS 35.0%
! TTAGAAGCACATTCATGTAG+AGG - chr2_4:53437224-53437243 None:intergenic 35.0%
CATGAATGTGCTTCTAAATG+CGG + chr2_4:53437227-53437246 Msa0334730:CDS 35.0%
AAATCTATCCAACAACACTG+CGG - chr2_4:53437280-53437299 None:intergenic 35.0%
TGTTGTTGGATAGATTTGGA+AGG + chr2_4:53437283-53437302 Msa0334730:CDS 35.0%
GAAGGAAACCATTGACAATA+GGG + chr2_4:53437301-53437320 Msa0334730:CDS 35.0%
!!! TAGTGGATTCTTTTGTTTGC+TGG + chr2_4:53437335-53437354 Msa0334730:CDS 35.0%
!! AGTGGATTCTTTTGTTTGCT+GGG + chr2_4:53437336-53437355 Msa0334730:CDS 35.0%
!! GGAGTTTTATGGGTAATGTA+GGG + chr2_4:53437358-53437377 Msa0334730:CDS 35.0%
!! GAGTTTTATGGGTAATGTAG+GGG + chr2_4:53437359-53437378 Msa0334730:CDS 35.0%
! AAATTGGTGTGTGGTGTTTT+AGG + chr2_4:53437396-53437415 Msa0334730:CDS 35.0%
! AATTGGTGTGTGGTGTTTTA+GGG + chr2_4:53437397-53437416 Msa0334730:CDS 35.0%
!!! TGTGGTGTTTTAGGGATATT+CGG + chr2_4:53437405-53437424 Msa0334730:CDS 35.0%
!!! TGTTTTAGGGATATTCGGAA+TGG + chr2_4:53437410-53437429 Msa0334730:CDS 35.0%
!! TGATACATTCAATGGATTGG+AGG + chr2_4:53437659-53437678 Msa0334730:CDS 35.0%
! TGAGTTGAGATCATCGGAAA+GGG - chr2_4:53432286-53432305 None:intergenic 40.0%
!!! TTGGTGGTTTTTGATGATGG+TGG - chr2_4:53432318-53432337 None:intergenic 40.0%
GAGATGCTTGAGAAATACTG+TGG + chr2_4:53432363-53432382 Msa0334730:CDS 40.0%
GAGAAATACTGTGGTGAGTT+TGG + chr2_4:53432372-53432391 Msa0334730:CDS 40.0%
ACTGTGGTGAGTTTGGAAAA+TGG + chr2_4:53432379-53432398 Msa0334730:CDS 40.0%
! TTGGAAGTGTGTTGAAGGTA+TGG + chr2_4:53432491-53432510 Msa0334730:CDS 40.0%
! GTTCAAGCACTTTTCTTTGC+TGG + chr2_4:53432642-53432661 Msa0334730:CDS 40.0%
TTCTTTGCTGGGTGTATGAT+TGG + chr2_4:53432654-53432673 Msa0334730:CDS 40.0%
AAACGTGGCTGTCATTAAGT+AGG + chr2_4:53433645-53433664 Msa0334730:intron 40.0%
GGCTGTCATTAAGTAGGTTA+AGG + chr2_4:53433651-53433670 Msa0334730:intron 40.0%
AGTTCACGTAGACGATGTTA+AGG + chr2_4:53433988-53434007 Msa0334730:intron 40.0%
CGTTCTTCAACAAACGACAT+TGG - chr2_4:53434104-53434123 None:intergenic 40.0%
! ATTAGTTTACCAGTTCCACG+GGG + chr2_4:53434755-53434774 Msa0334730:intron 40.0%
! AGTTGTTGTCCACTAGTTCT+TGG - chr2_4:53434803-53434822 None:intergenic 40.0%
!! CTAGTGGACAACAACTTTTG+AGG + chr2_4:53434807-53434826 Msa0334730:intron 40.0%
TAGGTTGTAGTGGTATCTTG+AGG + chr2_4:53435406-53435425 Msa0334730:intron 40.0%
AGGTTGTAGTGGTATCTTGA+GGG + chr2_4:53435407-53435426 Msa0334730:intron 40.0%
AGGGGATATTATGAGAGTGA+AGG + chr2_4:53435426-53435445 Msa0334730:intron 40.0%
AGGAATCTTTCTTAGGGGAA+TGG + chr2_4:53435446-53435465 Msa0334730:intron 40.0%
CTAATTTACGTTGAGTCCCA+AGG - chr2_4:53436123-53436142 None:intergenic 40.0%
AATTTATCCGGTCCCAACTT+GGG - chr2_4:53436365-53436384 None:intergenic 40.0%
AAATTTATCCGGTCCCAACT+TGG - chr2_4:53436366-53436385 None:intergenic 40.0%
! TATGTTGTCATTTCAGGAGC+TGG + chr2_4:53436505-53436524 Msa0334730:intron 40.0%
! ATTTCAGGAGCTGGAGTATT+TGG + chr2_4:53436514-53436533 Msa0334730:intron 40.0%
CACCTTTCAGATTCATCTCT+AGG + chr2_4:53436538-53436557 Msa0334730:CDS 40.0%
CAGCATTCTCCCCAAATTAT+TGG + chr2_4:53436617-53436636 Msa0334730:CDS 40.0%
TATGTATAGGATGGAAGGGA+TGG - chr2_4:53436848-53436867 None:intergenic 40.0%
CGTTTATTCTTCCTCGAACA+AGG - chr2_4:53436912-53436931 None:intergenic 40.0%
AATGGAAAACACCTTCCAGA+CGG + chr2_4:53436967-53436986 Msa0334730:CDS 40.0%
GAAAACAAGGATGCACAAGT+TGG + chr2_4:53437072-53437091 Msa0334730:CDS 40.0%
GTAGCGAATCACATCAATGA+TGG - chr2_4:53437100-53437119 None:intergenic 40.0%
AGCTCTTAACTTCTTAGCCT+CGG + chr2_4:53437152-53437171 Msa0334730:CDS 40.0%
!! TCATGTAGAGGTTAGTTTCG+AGG - chr2_4:53437212-53437231 None:intergenic 40.0%
! GCAGTGTTGTTGGATAGATT+TGG + chr2_4:53437279-53437298 Msa0334730:CDS 40.0%
GGAAGGAAACCATTGACAAT+AGG + chr2_4:53437300-53437319 Msa0334730:CDS 40.0%
CACATTGTCCCTATTGTCAA+TGG - chr2_4:53437312-53437331 None:intergenic 40.0%
CATTGACAATAGGGACAATG+TGG + chr2_4:53437310-53437329 Msa0334730:CDS 40.0%
ATAGGGACAATGTGGTTTAG+TGG + chr2_4:53437318-53437337 Msa0334730:CDS 40.0%
!! GTGGATTCTTTTGTTTGCTG+GGG + chr2_4:53437337-53437356 Msa0334730:CDS 40.0%
!! TTGTTTGCTGGGGAGTTTTA+TGG + chr2_4:53437347-53437366 Msa0334730:CDS 40.0%
!! TGTTTGCTGGGGAGTTTTAT+GGG + chr2_4:53437348-53437367 Msa0334730:CDS 40.0%
!! GGGAGTTTTATGGGTAATGT+AGG + chr2_4:53437357-53437376 Msa0334730:CDS 40.0%
TTTAGGGATATTCGGAATGG+CGG + chr2_4:53437413-53437432 Msa0334730:CDS 40.0%
CTACCTAAAACGACCACAAA+AGG - chr2_4:53437549-53437568 None:intergenic 40.0%
!! TTGTGGTCGTTTTAGGTAGT+TGG + chr2_4:53437550-53437569 Msa0334730:CDS 40.0%
! TTAGGTAGTTGGATGCCTTT+TGG + chr2_4:53437561-53437580 Msa0334730:CDS 40.0%
! GATGTTTGCGTTTTATCTGC+CGG + chr2_4:53437614-53437633 Msa0334730:CDS 40.0%
GCTCGTTGCAAACATTAGAT+TGG + chr2_4:53437838-53437857 Msa0334730:three_prime_UTR 40.0%
!!! CACCAATTGTTTTGATGGGT+AGG + chr2_4:53437970-53437989 Msa0334730:three_prime_UTR 40.0%
AGCCTACCCATCAAAACAAT+TGG - chr2_4:53437975-53437994 None:intergenic 40.0%
!!! GCGTTTTGCTTTGGAAACGT+GGG - chr2_4:53432228-53432247 None:intergenic 45.0%
!!! TGCGTTTTGCTTTGGAAACG+TGG - chr2_4:53432229-53432248 None:intergenic 45.0%
!!! GTGTTTGGTGCGTTTTGCTT+TGG - chr2_4:53432237-53432256 None:intergenic 45.0%
ACCAAACACAACCGAGATGT+CGG + chr2_4:53432248-53432267 Msa0334730:exon 45.0%
TGAGAATGTAGCCGACATCT+CGG - chr2_4:53432262-53432281 None:intergenic 45.0%
! GTGAGTTGAGATCATCGGAA+AGG - chr2_4:53432287-53432306 None:intergenic 45.0%
! GATCGGTGAGTTGAGATCAT+CGG - chr2_4:53432292-53432311 None:intergenic 45.0%
AACAAGTCTTGCTTGGGCTT+TGG + chr2_4:53432422-53432441 Msa0334730:CDS 45.0%
TTGCTGATAGGGAACCTGAT+TGG + chr2_4:53432472-53432491 Msa0334730:CDS 45.0%
CCTTCAACACACTTCCAATC+AGG - chr2_4:53432489-53432508 None:intergenic 45.0%
! CCTGATTGGAAGTGTGTTGA+AGG + chr2_4:53432486-53432505 Msa0334730:CDS 45.0%
!!! CACCGTAGAAGCATCTTTTC+CGG - chr2_4:53432574-53432593 None:intergenic 45.0%
ATGCTTCTACGGTGTCTGAA+TGG + chr2_4:53432580-53432599 Msa0334730:CDS 45.0%
!! AGACCAATCATCAAGTTGGG+AGG + chr2_4:53432872-53432891 Msa0334730:intron 45.0%
!! GACCAATCATCAAGTTGGGA+GGG + chr2_4:53432873-53432892 Msa0334730:intron 45.0%
!! ACCAATCATCAAGTTGGGAG+GGG + chr2_4:53432874-53432893 Msa0334730:intron 45.0%
AGTCTCTCCGTGCAAATAGT+TGG - chr2_4:53433451-53433470 None:intergenic 45.0%
TGATAGTCCCATCACAAACG+TGG + chr2_4:53433630-53433649 Msa0334730:intron 45.0%
ATGACAGCCACGTTTGTGAT+GGG - chr2_4:53433640-53433659 None:intergenic 45.0%
AATGACAGCCACGTTTGTGA+TGG - chr2_4:53433641-53433660 None:intergenic 45.0%
TGTTTCGTCCCTGCAATTAG+GGG - chr2_4:53433754-53433773 None:intergenic 45.0%
GTGTTTCGTCCCTGCAATTA+GGG - chr2_4:53433755-53433774 None:intergenic 45.0%
TGTGTTTCGTCCCTGCAATT+AGG - chr2_4:53433756-53433775 None:intergenic 45.0%
ATAAGGGACGTGCAACTTGA+GGG + chr2_4:53434628-53434647 Msa0334730:intron 45.0%
! CTGTGGTCCTTTTCTCTTTC+AGG - chr2_4:53434674-53434693 None:intergenic 45.0%
GATCCGACACACAAGTTTCA+TGG - chr2_4:53434933-53434952 None:intergenic 45.0%
! TTGATTGGTGTGCTGATCGA+AGG - chr2_4:53435334-53435353 None:intergenic 45.0%
GGTTGTAGTGGTATCTTGAG+GGG + chr2_4:53435408-53435427 Msa0334730:intron 45.0%
CGCTGCAACGTAATTCAAAG+AGG - chr2_4:53436098-53436117 None:intergenic 45.0%
AATTACGTTGCAGCGAACCT+TGG + chr2_4:53436103-53436122 Msa0334730:intron 45.0%
ATTACGTTGCAGCGAACCTT+GGG + chr2_4:53436104-53436123 Msa0334730:intron 45.0%
TGTGCCCTAAACACCATCTT+TGG + chr2_4:53436586-53436605 Msa0334730:CDS 45.0%
GCAGCCAAAGATGGTGTTTA+GGG - chr2_4:53436593-53436612 None:intergenic 45.0%
AGCAGCCAAAGATGGTGTTT+AGG - chr2_4:53436594-53436613 None:intergenic 45.0%
TGCTGTTAAGCAGCCAAAGA+TGG - chr2_4:53436602-53436621 None:intergenic 45.0%
ACCTTCTACTTCTTCTCGAG+CGG + chr2_4:53436757-53436776 Msa0334730:CDS 45.0%
! AAGGTACCATCTTGGAGACT+CGG - chr2_4:53436893-53436912 None:intergenic 45.0%
ATACCTCTTCATCGAGTGCA+AGG - chr2_4:53436999-53437018 None:intergenic 45.0%
TCTTAACTTCTTAGCCTCGG+TGG + chr2_4:53437155-53437174 Msa0334730:CDS 45.0%
TTAGCCTCGGTGGTGTATTA+TGG + chr2_4:53437165-53437184 Msa0334730:CDS 45.0%
AAGACCATAATACACCACCG+AGG - chr2_4:53437172-53437191 None:intergenic 45.0%
TTATGGGTAATGTAGGGGTG+TGG + chr2_4:53437364-53437383 Msa0334730:CDS 45.0%
TTAGGGATATTCGGAATGGC+GGG + chr2_4:53437414-53437433 Msa0334730:CDS 45.0%
! CACATCGGAGTTGTTTCCTA+CGG + chr2_4:53437461-53437480 Msa0334730:CDS 45.0%
! AGTTGTTTCCTACGGTGGTA+AGG + chr2_4:53437469-53437488 Msa0334730:CDS 45.0%
!!! GATGCCTTTTGGAGTGTTTG+CGG + chr2_4:53437572-53437591 Msa0334730:CDS 45.0%
CATACCGCAAACACTCCAAA+AGG - chr2_4:53437579-53437598 None:intergenic 45.0%
! TTTGGAGTGTTTGCGGTATG+CGG + chr2_4:53437579-53437598 Msa0334730:CDS 45.0%
! TTTGCGGTATGCGGGATTTT+AGG + chr2_4:53437588-53437607 Msa0334730:CDS 45.0%
! AGAGGCATATTCAGTGTCTC+CGG - chr2_4:53437636-53437655 None:intergenic 45.0%
!! ACATTCAATGGATTGGAGGC+TGG + chr2_4:53437663-53437682 Msa0334730:CDS 45.0%
AGATTGGCGACCCTTATACA+TGG + chr2_4:53437854-53437873 Msa0334730:three_prime_UTR 45.0%
GATTGGCGACCCTTATACAT+GGG + chr2_4:53437855-53437874 Msa0334730:three_prime_UTR 45.0%
!! GTAATTAATATAAAAATATT+AGG - chr2_4:53433021-53433040 None:intergenic 5.0%
!!! ATTTATTTTAATTATTTACT+TGG + chr2_4:53433353-53433372 Msa0334730:intron 5.0%
!!! TTAGTATATTTAATTTTTTA+AGG - chr2_4:53433397-53433416 None:intergenic 5.0%
!!! TAATAAGATAATAATTTTTT+GGG - chr2_4:53436311-53436330 None:intergenic 5.0%
!!! ATAATAAGATAATAATTTTT+TGG - chr2_4:53436312-53436331 None:intergenic 5.0%
!! TTTGCTTTGGAAACGTGGGC+TGG - chr2_4:53432224-53432243 None:intergenic 50.0%
CATATCGCAGACACTTCCAC+CGG - chr2_4:53432526-53432545 None:intergenic 50.0%
CGCCGGAAAAGATGCTTCTA+CGG + chr2_4:53432569-53432588 Msa0334730:CDS 50.0%
! ACCCCTCCCAACTTGATGAT+TGG - chr2_4:53432878-53432897 None:intergenic 50.0%
AAGATGATGAGCCATGCGAC+AGG + chr2_4:53434422-53434441 Msa0334730:intron 50.0%
GATAAGGGACGTGCAACTTG+AGG + chr2_4:53434627-53434646 Msa0334730:intron 50.0%
AAATGAGAACCCCGTGGAAC+TGG - chr2_4:53434767-53434786 None:intergenic 50.0%
AGTTCCACGGGGTTCTCATT+TGG + chr2_4:53434766-53434785 Msa0334730:intron 50.0%
GCTCGAGAAGAAGTAGAAGG+TGG - chr2_4:53436758-53436777 None:intergenic 50.0%
AGCGGCATAGCAATTCTCTC+TGG + chr2_4:53436775-53436794 Msa0334730:CDS 50.0%
TCGCCTACACCTTCCAAACA+TGG + chr2_4:53436800-53436819 Msa0334730:CDS 50.0%
TGTAGAGTGTGCGCCATGTT+TGG - chr2_4:53436816-53436835 None:intergenic 50.0%
GTATAGGATGGAAGGGATGG+AGG - chr2_4:53436845-53436864 None:intergenic 50.0%
CTTGGAGACTCGGAGATGAA+GGG - chr2_4:53436883-53436902 None:intergenic 50.0%
TCTTGGAGACTCGGAGATGA+AGG - chr2_4:53436884-53436903 None:intergenic 50.0%
TCATCTCCGAGTCTCCAAGA+TGG + chr2_4:53436884-53436903 Msa0334730:CDS 50.0%
! CCTCGAACAAGGTACCATCT+TGG - chr2_4:53436901-53436920 None:intergenic 50.0%
CCAAGATGGTACCTTGTTCG+AGG + chr2_4:53436898-53436917 Msa0334730:CDS 50.0%
TGTCCTTGCACTCGATGAAG+AGG + chr2_4:53436993-53437012 Msa0334730:CDS 50.0%
ACTGCGGTTATCGTGAATGC+TGG - chr2_4:53437264-53437283 None:intergenic 50.0%
CACGATAACCGCAGTGTTGT+TGG + chr2_4:53437269-53437288 Msa0334730:CDS 50.0%
! ATCGGAGTTGTTTCCTACGG+TGG + chr2_4:53437464-53437483 Msa0334730:CDS 50.0%
TGGTAAGGAACGCAGCACTT+GGG + chr2_4:53437484-53437503 Msa0334730:CDS 50.0%
!! GCGCCTTTTGTGGTCGTTTT+AGG + chr2_4:53437543-53437562 Msa0334730:CDS 50.0%
! TTGGAGTGTTTGCGGTATGC+GGG + chr2_4:53437580-53437599 Msa0334730:CDS 50.0%
!! CGGTATGCGGGATTTTAGGT+GGG + chr2_4:53437592-53437611 Msa0334730:CDS 50.0%
GCCGACATCTCGGTTGTGTT+TGG - chr2_4:53432252-53432271 None:intergenic 55.0%
! GAAGGTATGGAGTGTTCCGC+CGG + chr2_4:53432504-53432523 Msa0334730:CDS 55.0%
!! CGGTGGAAGTGTCTGCGATA+TGG + chr2_4:53432524-53432543 Msa0334730:CDS 55.0%
GGAACCAAATGAGAACCCCG+TGG - chr2_4:53434773-53434792 None:intergenic 55.0%
! ACATTGGCCCAAGTTGGGAC+CGG + chr2_4:53436355-53436374 Msa0334730:intron 55.0%
! AACACCGCCAGTGCTGAAAC+CGG - chr2_4:53436668-53436687 None:intergenic 55.0%
! CTTTGATGGGCCAATGGGCT+CGG - chr2_4:53436716-53436735 None:intergenic 55.0%
GCCGCTCGAGAAGAAGTAGA+AGG - chr2_4:53436761-53436780 None:intergenic 55.0%
! GCGCCATGTTTGGAAGGTGT+AGG - chr2_4:53436806-53436825 None:intergenic 55.0%
GAGTGTGCGCCATGTTTGGA+AGG - chr2_4:53436812-53436831 None:intergenic 55.0%
CGGAGATGAAGGGAAGGACA+AGG - chr2_4:53436873-53436892 None:intergenic 55.0%
GAGACTCGGAGATGAAGGGA+AGG - chr2_4:53436879-53436898 None:intergenic 55.0%
CAAGGACAACTCCGTCTGGA+AGG - chr2_4:53436981-53437000 None:intergenic 55.0%
AGTGCAAGGACAACTCCGTC+TGG - chr2_4:53436985-53437004 None:intergenic 55.0%
GTGGTAAGGAACGCAGCACT+TGG + chr2_4:53437483-53437502 Msa0334730:CDS 55.0%
CAAAATCGCCCCCATTTGCG+CGG - chr2_4:53437523-53437542 None:intergenic 55.0%
!! GGCGATTTTGGCGCCTTTTG+TGG + chr2_4:53437533-53437552 Msa0334730:CDS 55.0%
! GCGGTATGCGGGATTTTAGG+TGG + chr2_4:53437591-53437610 Msa0334730:CDS 55.0%
ATCGCAGACACTTCCACCGG+CGG - chr2_4:53432523-53432542 None:intergenic 60.0%
TGTCAGTCACGCCTGTCGCA+TGG - chr2_4:53434436-53434455 None:intergenic 60.0%
TGCTGAAACCGGTGAGGAGG+CGG - chr2_4:53436657-53436676 None:intergenic 60.0%
! CAGTGCTGAAACCGGTGAGG+AGG - chr2_4:53436660-53436679 None:intergenic 60.0%
!! CTCCTCACCGGTTTCAGCAC+TGG + chr2_4:53436658-53436677 Msa0334730:CDS 60.0%
!! CTCACCGGTTTCAGCACTGG+CGG + chr2_4:53436661-53436680 Msa0334730:CDS 60.0%
!! GGTTTCAGCACTGGCGGTGT+TGG + chr2_4:53436667-53436686 Msa0334730:CDS 60.0%
! TGGCAAGGACGAAGGCGCAA+AGG - chr2_4:53436693-53436712 None:intergenic 60.0%
! CCGCGCTTTGATGGGCCAAT+GGG - chr2_4:53436721-53436740 None:intergenic 60.0%
CCCATTGGCCCATCAAAGCG+CGG + chr2_4:53436718-53436737 Msa0334730:CDS 60.0%
CTGCCATGCCGCGCTTTGAT+GGG - chr2_4:53436729-53436748 None:intergenic 60.0%
GCTGCGTTCCTTACCACCGT+AGG - chr2_4:53437480-53437499 None:intergenic 60.0%
TGCGACACAAGCCGCGCAAA+TGG + chr2_4:53437509-53437528 Msa0334730:CDS 60.0%
GCGACACAAGCCGCGCAAAT+GGG + chr2_4:53437510-53437529 Msa0334730:CDS 60.0%
CGACACAAGCCGCGCAAATG+GGG + chr2_4:53437511-53437530 Msa0334730:CDS 60.0%
GACACAAGCCGCGCAAATGG+GGG + chr2_4:53437512-53437531 Msa0334730:CDS 60.0%
! CGCGCAAATGGGGGCGATTT+TGG + chr2_4:53437521-53437540 Msa0334730:CDS 60.0%
! GGTATGGAGTGTTCCGCCGG+TGG + chr2_4:53432507-53432526 Msa0334730:CDS 65.0%
GCGATATGGCGTCGTCGTCG+TGG + chr2_4:53432538-53432557 Msa0334730:CDS 65.0%
TCGTCGTGGCAGTGGATCGC+CGG + chr2_4:53432552-53432571 Msa0334730:CDS 65.0%
TGAAACCGGTGAGGAGGCGG+AGG - chr2_4:53436654-53436673 None:intergenic 65.0%
! CGCCAGTGCTGAAACCGGTG+AGG - chr2_4:53436663-53436682 None:intergenic 65.0%
GTCCTTGCCACCGAGCCCAT+TGG + chr2_4:53436703-53436722 Msa0334730:CDS 65.0%
! TGATGGGCCAATGGGCTCGG+TGG - chr2_4:53436713-53436732 None:intergenic 65.0%
! GCCGCGCTTTGATGGGCCAA+TGG - chr2_4:53436722-53436741 None:intergenic 65.0%
TGGCCCATCAAAGCGCGGCA+TGG + chr2_4:53436723-53436742 Msa0334730:CDS 65.0%
CCTGCCATGCCGCGCTTTGA+TGG - chr2_4:53436730-53436749 None:intergenic 65.0%
CCATCAAAGCGCGGCATGGC+AGG + chr2_4:53436727-53436746 Msa0334730:CDS 65.0%
TGGCGTCGTCGTCGTGGCAG+TGG + chr2_4:53432544-53432563 Msa0334730:CDS 70.0%
GTCCTCCTCCGCCTCCTCAC+CGG + chr2_4:53436646-53436665 Msa0334730:CDS 70.0%
AACCGGTGAGGAGGCGGAGG+AGG - chr2_4:53436651-53436670 None:intergenic 70.0%
!! GGGCTCGGTGGCAAGGACGA+AGG - chr2_4:53436701-53436720 None:intergenic 70.0%
!! GGCCAATGGGCTCGGTGGCA+AGG - chr2_4:53436708-53436727 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 53432138 53438028 53432138 ID=Msa0334730;Name=Msa0334730
chr2_4 mRNA 53432138 53438028 53432138 ID=Msa0334730-mRNA-1;Parent=Msa0334730;Name=Msa0334730-mRNA-1;_AED=0.02;_eAED=0.02;_QI=126|1|1|1|1|1|2|333|528
chr2_4 exon 53432138 53432675 53432138 ID=Msa0334730-mRNA-1:exon:16135;Parent=Msa0334730-mRNA-1
chr2_4 exon 53436521 53438028 53436521 ID=Msa0334730-mRNA-1:exon:16136;Parent=Msa0334730-mRNA-1
chr2_4 five_prime_UTR 53432138 53432263 53432138 ID=Msa0334730-mRNA-1:five_prime_utr;Parent=Msa0334730-mRNA-1
chr2_4 CDS 53432264 53432675 53432264 ID=Msa0334730-mRNA-1:cds;Parent=Msa0334730-mRNA-1
chr2_4 CDS 53436521 53437695 53436521 ID=Msa0334730-mRNA-1:cds;Parent=Msa0334730-mRNA-1
chr2_4 three_prime_UTR 53437696 53438028 53437696 ID=Msa0334730-mRNA-1:three_prime_utr;Parent=Msa0334730-mRNA-1
Gene Sequence

>Msa0334730

ATGTCGGCTACATTCTCATCCCTTTCCGATGATCTCAACTCACCGATCTTACCACCATCATCAAAAACCACCAATGAAACTGAAAAAATCTGCATCGATGAGATGCTTGAGAAATACTGTGGTGAGTTTGGAAAATGGCAGCTGAAACACTTCATTCTAACAAGTCTTGCTTGGGCTTTGGAAGCTTTTCATACTATGGTTATGATTTTTGCTGATAGGGAACCTGATTGGAAGTGTGTTGAAGGTATGGAGTGTTCCGCCGGTGGAAGTGTCTGCGATATGGCGTCGTCGTCGTGGCAGTGGATCGCCGGAAAAGATGCTTCTACGGTGTCTGAATGGAGTTTGATTTGTGGTGATAAGTTTAAGGTTGGACTTATTGTTCAAGCACTTTTCTTTGCTGGGTGTATGATTGGAGCTGGAGTATTTGGACACCTTTCAGATTCATCTCTAGGAAGAAAGGGTTCTCTCATAGTTGTTTGTGCCCTAAACACCATCTTTGGCTGCTTAACAGCATTCTCCCCAAATTATTGGATCTATGTCCTCCTCCGCCTCCTCACCGGTTTCAGCACTGGCGGTGTTGGCCTTTGCGCCTTCGTCCTTGCCACCGAGCCCATTGGCCCATCAAAGCGCGGCATGGCAGGAATGTCCACCTTCTACTTCTTCTCGAGCGGCATAGCAATTCTCTCTGGCATCGCCTACACCTTCCAAACATGGCGCACACTCTACATTGTTTCCTCCATCCCTTCCATCCTATACATAATCCTTGTCCTTCCCTTCATCTCCGAGTCTCCAAGATGGTACCTTGTTCGAGGAAGAATAAACGAAGCGACTACACTCATGTCCACAATTGCTTCTTACAATGGAAAACACCTTCCAGACGGAGTTGTCCTTGCACTCGATGAAGAGGTATCAAATTCAAAAAAATCAACAAGTGATCTTGAATACAACCTAATTAGCTACGTGGAAAACAAGGATGCACAAGTTGGATCCATCATTGATGTGATTCGCTACCCAGTTACACGTATTAGGTTATTTCTAGCAATAGCTCTTAACTTCTTAGCCTCGGTGGTGTATTATGGTCTTAGCTTAAACGTTACAAACCTCGAAACTAACCTCTACATGAATGTGCTTCTAAATGCGGTCGCAGAGATGCCAGCATTCACGATAACCGCAGTGTTGTTGGATAGATTTGGAAGGAAACCATTGACAATAGGGACAATGTGGTTTAGTGGATTCTTTTGTTTGCTGGGGAGTTTTATGGGTAATGTAGGGGTGTGGAAAGTAATTAAATTGGTGTGTGGTGTTTTAGGGATATTCGGAATGGCGGGAACTTATAATTTGTTGTTTATTTACACATCGGAGTTGTTTCCTACGGTGGTAAGGAACGCAGCACTTGGGAGTGCGACACAAGCCGCGCAAATGGGGGCGATTTTGGCGCCTTTTGTGGTCGTTTTAGGTAGTTGGATGCCTTTTGGAGTGTTTGCGGTATGCGGGATTTTAGGTGGGATGTTTGCGTTTTATCTGCCGGAGACACTGAATATGCCTCTTTATGATACATTCAATGGATTGGAGGCTGGACTTGCATGA
Protein sequence

>Msa0334730

MSATFSSLSDDLNSPILPPSSKTTNETEKICIDEMLEKYCGEFGKWQLKHFILTSLAWALEAFHTMVMIFADREPDWKCVEGMECSAGGSVCDMASSSWQWIAGKDASTVSEWSLICGDKFKVGLIVQALFFAGCMIGAGVFGHLSDSSLGRKGSLIVVCALNTIFGCLTAFSPNYWIYVLLRLLTGFSTGGVGLCAFVLATEPIGPSKRGMAGMSTFYFFSSGIAILSGIAYTFQTWRTLYIVSSIPSILYIILVLPFISESPRWYLVRGRINEATTLMSTIASYNGKHLPDGVVLALDEEVSNSKKSTSDLEYNLISYVENKDAQVGSIIDVIRYPVTRIRLFLAIALNFLASVVYYGLSLNVTNLETNLYMNVLLNAVAEMPAFTITAVLLDRFGRKPLTIGTMWFSGFFCLLGSFMGNVGVWKVIKLVCGVLGIFGMAGTYNLLFIYTSELFPTVVRNAALGSATQAAQMGAILAPFVVVLGSWMPFGVFAVCGILGGMFAFYLPETLNMPLYDTFNGLEAGLA*