Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339580 | XP_013465402.1 | 97.260 | 146 | 4 | 0 | 1 | 146 | 1 | 146 | 1.02e-97 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339580 | sp|Q41050|OEP16_PEA | 86.301 | 146 | 20 | 0 | 1 | 146 | 1 | 146 | 8.32e-76 | 225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0302450 | Msa0339580 | 0.824656 | 7.172231e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339580 | MtrunA17_Chr2g0328141 | 97.260 | 146 | 4 | 0 | 1 | 146 | 1 | 146 | 9.34e-102 | 287 |
| Msa0339580 | MtrunA17_Chr2g0328131 | 85.315 | 143 | 21 | 0 | 1 | 143 | 1 | 143 | 6.28e-68 | 202 |
| Msa0339580 | MtrunA17_Chr4g0068231 | 32.895 | 152 | 73 | 3 | 19 | 142 | 25 | 175 | 4.56e-20 | 81.6 |
| Msa0339580 | MtrunA17_Chr2g0294641 | 30.464 | 151 | 77 | 3 | 20 | 142 | 28 | 178 | 8.95e-17 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339580 | AT2G28900.1 | 61.111 | 144 | 56 | 0 | 1 | 144 | 1 | 144 | 5.49e-65 | 195 |
| Msa0339580 | AT4G16160.1 | 28.947 | 152 | 81 | 3 | 19 | 143 | 22 | 173 | 4.89e-17 | 73.9 |
| Msa0339580 | AT4G16160.2 | 28.571 | 154 | 81 | 3 | 19 | 143 | 22 | 175 | 1.04e-16 | 73.2 |
Find 76 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTAATCTAGCTGTTGA+TGG | 0.254458 | 2_4:-60783945 | Msa0339580:CDS |
| TGGTTAGAAAATGATTTAAA+TGG | 0.256408 | 2_4:+60781977 | None:intergenic |
| TTGTTTGTCACTACAAATAT+TGG | 0.257864 | 2_4:+60781786 | None:intergenic |
| ATGCCTTGGAGCAGAATTTC+CGG | 0.262488 | 2_4:-60784017 | Msa0339580:CDS |
| TAGTTAACAGTATGAGTGTT+AGG | 0.297129 | 2_4:+60784078 | None:intergenic |
| AACCATCAACAGCTAGATTA+AGG | 0.310083 | 2_4:+60783943 | None:intergenic |
| TTTACCTGAATGAACTGAAT+TGG | 0.321590 | 2_4:-60782056 | Msa0339580:exon |
| TGTTTAAAACAAACTTTATG+AGG | 0.337467 | 2_4:-60781939 | Msa0339580:three_prime_UTR |
| GTTGATGGTTTCTTGAAGAT+TGG | 0.371740 | 2_4:-60783930 | Msa0339580:CDS |
| CTATTATTACATGTTTGAAA+AGG | 0.377959 | 2_4:-60782022 | Msa0339580:three_prime_UTR |
| TGTGCAAGGAAGGTGCATAC+TGG | 0.379148 | 2_4:-60782690 | Msa0339580:CDS |
| ATGATCGGAGGTGCGGTGAC+AGG | 0.380411 | 2_4:-60782179 | Msa0339580:CDS |
| ATTGCAGTAGATGCCATTAC+AGG | 0.382089 | 2_4:-60782116 | Msa0339580:CDS |
| GGGTTGAATTGTATTACTAT+TGG | 0.413413 | 2_4:-60782000 | Msa0339580:three_prime_UTR |
| ACATCCAATTCAGTTCATTC+AGG | 0.416427 | 2_4:+60782052 | None:intergenic |
| TATTATTACATGTTTGAAAA+GGG | 0.418142 | 2_4:-60782021 | Msa0339580:three_prime_UTR |
| GGATCCGTGGCACCAGAGAC+TGG | 0.423846 | 2_4:-60782531 | Msa0339580:CDS |
| TGCCTTGGAGCAGAATTTCC+GGG | 0.441939 | 2_4:-60784016 | Msa0339580:CDS |
| CGGGTCAGTGTCTTCTCCAC+AGG | 0.444117 | 2_4:-60783997 | Msa0339580:CDS |
| TCTACGCTCACAGGAGCTAT+AGG | 0.446399 | 2_4:-60782589 | Msa0339580:intron |
| AAAATACAAAGTTGAGTTTG+TGG | 0.451118 | 2_4:-60781580 | None:intergenic |
| GTCTTCTCCACAGGTGGATG+TGG | 0.459851 | 2_4:-60783988 | Msa0339580:CDS |
| TGACAAGACTAGAATATGTC+TGG | 0.461727 | 2_4:+60781697 | None:intergenic |
| GTATATGTTGGAACAGAATA+CGG | 0.461937 | 2_4:-60782562 | Msa0339580:CDS |
| AGTTAACAGTATGAGTGTTA+GGG | 0.463335 | 2_4:+60784079 | None:intergenic |
| AAACAAAGGATTGGACGATC+TGG | 0.463407 | 2_4:+60781957 | None:intergenic |
| TGATCGGAGGTGCGGTGACA+GGG | 0.467838 | 2_4:-60782178 | Msa0339580:CDS |
| TGTCACCGCACCTCCGATCA+TGG | 0.470776 | 2_4:+60782181 | None:intergenic |
| GTGCAAGGAAGGTGCATACT+GGG | 0.476518 | 2_4:-60782689 | Msa0339580:CDS |
| TTCAGTTCATTCAGGTAAAG+TGG | 0.477368 | 2_4:+60782060 | None:intergenic |
| GCTATAGGCGGCGTATATGT+TGG | 0.477982 | 2_4:-60782574 | Msa0339580:CDS |
| ATTCTTTACTCAGCCTCTCC+AGG | 0.480324 | 2_4:-60781761 | Msa0339580:three_prime_UTR |
| ATAAAGAGTCCTCAGTAGCC+TGG | 0.488071 | 2_4:+60781743 | None:intergenic |
| TGAGAGAATTACCCAGTCTC+TGG | 0.488901 | 2_4:+60782519 | None:intergenic |
| GGCAATTGCAGCCCCTGTAA+TGG | 0.494547 | 2_4:+60782103 | None:intergenic |
| CTAGAATATGTCTGGTGGTA+CGG | 0.518828 | 2_4:+60781705 | None:intergenic |
| CTGAAGAAGATGTGCAAGGA+AGG | 0.520056 | 2_4:-60782700 | Msa0339580:CDS |
| AATGTAGTATCTAGCTAGCA+AGG | 0.529413 | 2_4:+60784102 | None:intergenic |
| TATATGTTGGAACAGAATAC+GGG | 0.532988 | 2_4:-60782561 | Msa0339580:CDS |
| GTTTAAAACAAACTTTATGA+GGG | 0.540955 | 2_4:-60781938 | Msa0339580:three_prime_UTR |
| GTCAGTGTCTTCTCCACAGG+TGG | 0.548058 | 2_4:-60783994 | Msa0339580:CDS |
| ATTATTACATGTTTGAAAAG+GGG | 0.564765 | 2_4:-60782020 | Msa0339580:three_prime_UTR |
| TTGCAGTAGATGCCATTACA+GGG | 0.565602 | 2_4:-60782115 | Msa0339580:CDS |
| GGATGAAGTCCTTCGAGTGA+AGG | 0.568907 | 2_4:+60781807 | None:intergenic |
| ACTCAGTTACTCGACGGAGC+AGG | 0.574093 | 2_4:+60781662 | None:intergenic |
| CTGCAGAAGAATGCCATGAT+CGG | 0.581201 | 2_4:-60782194 | Msa0339580:intron |
| GATCGGAGGTGCGGTGACAG+GGG | 0.583014 | 2_4:-60782177 | Msa0339580:CDS |
| ACCTCTAGTCCTTCACTCGA+AGG | 0.583330 | 2_4:-60781816 | Msa0339580:three_prime_UTR |
| ACTCTTTCTGACAATATGAA+AGG | 0.589407 | 2_4:+60783790 | None:intergenic |
| GTTTATGAATTCTGCAGCAG+TGG | 0.590673 | 2_4:+60782082 | None:intergenic |
| TTACCCAGTCTCTGGTGCCA+CGG | 0.593471 | 2_4:+60782527 | None:intergenic |
| GATCCGTGGCACCAGAGACT+GGG | 0.594640 | 2_4:-60782530 | Msa0339580:intron |
| AAAGCAATCCTGTCATGCAT+AGG | 0.599403 | 2_4:+60784149 | None:intergenic |
| AGCTACGAGGGCACTTGCAG+AGG | 0.610525 | 2_4:-60783816 | Msa0339580:CDS |
| GAACAGAATACGGGGTAGAG+AGG | 0.617900 | 2_4:-60782552 | Msa0339580:CDS |
| TCCTTCGAGTGAAGGACTAG+AGG | 0.619894 | 2_4:+60781815 | None:intergenic |
| GAGTCCTCAGTAGCCTGGAG+AGG | 0.624546 | 2_4:+60781748 | None:intergenic |
| CTGTGGAGAAGACACTGACC+CGG | 0.631326 | 2_4:+60783998 | None:intergenic |
| GGTGGATGTGGACATAGACA+TGG | 0.632244 | 2_4:-60783976 | Msa0339580:CDS |
| GACCCGGAAATTCTGCTCCA+AGG | 0.633432 | 2_4:+60784014 | None:intergenic |
| GAATGCCATGATCGGAGGTG+CGG | 0.635353 | 2_4:-60782186 | Msa0339580:CDS |
| ACACTACAAAGCAAATGAGA+AGG | 0.637754 | 2_4:-60781888 | Msa0339580:three_prime_UTR |
| ATGTAGTATCTAGCTAGCAA+GGG | 0.645937 | 2_4:+60784103 | None:intergenic |
| CAGAAGAATGCCATGATCGG+AGG | 0.646513 | 2_4:-60782191 | Msa0339580:CDS |
| TCAGCCTCTCCAGGCTACTG+AGG | 0.646694 | 2_4:-60781752 | Msa0339580:three_prime_UTR |
| TCAACAGCTAGATTAAGGAA+AGG | 0.647866 | 2_4:+60783948 | None:intergenic |
| TATAATACTCAGTTACTCGA+CGG | 0.658312 | 2_4:+60781656 | None:intergenic |
| TCTATGTCCACATCCACCTG+TGG | 0.667504 | 2_4:+60783981 | None:intergenic |
| TACGGGGTAGAGAGGATCCG+TGG | 0.679908 | 2_4:-60782544 | Msa0339580:CDS |
| TGCAAGGAAGGTGCATACTG+GGG | 0.686067 | 2_4:-60782688 | Msa0339580:intron |
| TGCAGTAGATGCCATTACAG+GGG | 0.693597 | 2_4:-60782114 | Msa0339580:CDS |
| GTGGATGTGGACATAGACAT+GGG | 0.699956 | 2_4:-60783975 | Msa0339580:CDS |
| CAAGACTAGAATATGTCTGG+TGG | 0.704683 | 2_4:+60781700 | None:intergenic |
| GCAGCTGAAGAAGATGTGCA+AGG | 0.725846 | 2_4:-60782704 | Msa0339580:intron |
| ATATGTTGGAACAGAATACG+GGG | 0.766118 | 2_4:-60782560 | Msa0339580:CDS |
| ACGCTCACAGGAGCTATAGG+CGG | 0.791553 | 2_4:-60782586 | Msa0339580:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAAATTCATTAATTAAA+GGG | + | chr2_4:60782754-60782773 | None:intergenic | 10.0% |
| !!! | TTTTGACAATTTTAACAAAA+GGG | + | chr2_4:60782002-60782021 | None:intergenic | 15.0% |
| !! | GATTGAAATTCATTAATTAA+AGG | + | chr2_4:60782755-60782774 | None:intergenic | 15.0% |
| !! | TATTATTACATGTTTGAAAA+GGG | - | chr2_4:60783720-60783739 | Msa0339580:intron | 15.0% |
| !!! | ATAAAGTTTGTTTTAAACAA+AGG | + | chr2_4:60783801-60783820 | None:intergenic | 15.0% |
| !!! | CTTTTGACAATTTTAACAAA+AGG | + | chr2_4:60782003-60782022 | None:intergenic | 20.0% |
| !! | AAAGATGAAAAATTTGATTC+TGG | - | chr2_4:60782019-60782038 | Msa0339580:three_prime_UTR | 20.0% |
| !! | TAATAACACAAATCTAAACA+AGG | + | chr2_4:60782066-60782085 | None:intergenic | 20.0% |
| !! | GAAATTTAACACATTGATAT+TGG | + | chr2_4:60782093-60782112 | None:intergenic | 20.0% |
| !! | ACAATACTTCAAAAAGAAAA+AGG | + | chr2_4:60782123-60782142 | None:intergenic | 20.0% |
| !!! | ATTTAACATTGTTGTTATCA+TGG | - | chr2_4:60782244-60782263 | Msa0339580:intron | 20.0% |
| !! | CAATTAGAAATGTATAAAAC+TGG | + | chr2_4:60782320-60782339 | None:intergenic | 20.0% |
| !!! | TAGAGAAAACACTTTATTTT+TGG | - | chr2_4:60783309-60783328 | Msa0339580:intron | 20.0% |
| !! | CTATTATTACATGTTTGAAA+AGG | - | chr2_4:60783719-60783738 | Msa0339580:intron | 20.0% |
| !! | ATTATTACATGTTTGAAAAG+GGG | - | chr2_4:60783721-60783740 | Msa0339580:intron | 20.0% |
| !! | TGGTTAGAAAATGATTTAAA+TGG | + | chr2_4:60783767-60783786 | None:intergenic | 20.0% |
| !!! | TGTTTAAAACAAACTTTATG+AGG | - | chr2_4:60783802-60783821 | Msa0339580:CDS | 20.0% |
| !!! | GTTTAAAACAAACTTTATGA+GGG | - | chr2_4:60783803-60783822 | Msa0339580:CDS | 20.0% |
| !!! | TTATCATGGTTGATTCTTTT+GGG | - | chr2_4:60782258-60782277 | Msa0339580:intron | 25.0% |
| !! | AAATATCAGGATAGATTTTC+AGG | + | chr2_4:60782297-60782316 | None:intergenic | 25.0% |
| ! | TGTATAAAACTGGAAATATC+AGG | + | chr2_4:60782310-60782329 | None:intergenic | 25.0% |
| !! | ATTGTGAGTATTTTACAGAT+TGG | - | chr2_4:60782336-60782355 | Msa0339580:intron | 25.0% |
| ! | TAGATAAGCTATGATGAAAA+AGG | + | chr2_4:60782387-60782406 | None:intergenic | 25.0% |
| ! | CTTAACTGTCAAATCAAAAT+TGG | - | chr2_4:60782525-60782544 | Msa0339580:intron | 25.0% |
| ! | TGAGAATCTAAATTCTCAAA+AGG | - | chr2_4:60782662-60782681 | Msa0339580:intron | 25.0% |
| ! | GAGAATCTAAATTCTCAAAA+GGG | - | chr2_4:60782663-60782682 | Msa0339580:intron | 25.0% |
| ! | TGTGAGTAAAATAAGCATTT+CGG | - | chr2_4:60782696-60782715 | Msa0339580:CDS | 25.0% |
| !!! | ACATATAACCTTTGAAATTG+TGG | - | chr2_4:60782849-60782868 | Msa0339580:intron | 25.0% |
| ! | ATTTCTGTTTCGTAAATTTG+AGG | - | chr2_4:60782905-60782924 | Msa0339580:intron | 25.0% |
| ! | TTTCTGTTTCGTAAATTTGA+GGG | - | chr2_4:60782906-60782925 | Msa0339580:intron | 25.0% |
| ! | TTGTGTTGCATTATGTAATA+TGG | - | chr2_4:60783082-60783101 | Msa0339580:intron | 25.0% |
| ! | TTATTAACAAGCATCATGTT+TGG | - | chr2_4:60783378-60783397 | Msa0339580:intron | 25.0% |
| ! | GAAATGAATTTGTAAAAGCT+GGG | - | chr2_4:60783400-60783419 | Msa0339580:intron | 25.0% |
| !!! | GTTTGTTTTAAACAAAGGAT+TGG | + | chr2_4:60783796-60783815 | None:intergenic | 25.0% |
| ! | TTGTTTGTCACTACAAATAT+TGG | + | chr2_4:60783958-60783977 | None:intergenic | 25.0% |
| !!! | TCTAGTCTTGTCAAAATTTT+CGG | - | chr2_4:60784054-60784073 | Msa0339580:five_prime_UTR | 25.0% |
| !!! | ACATTCCTTTTTCACATAAA+AGG | - | chr2_4:60784119-60784138 | Msa0339580:five_prime_UTR | 25.0% |
| !! | AACAACCTTTTATGTGAAAA+AGG | + | chr2_4:60784127-60784146 | None:intergenic | 25.0% |
| !!! | TTTGTATTTTTACTCGTTAG+TGG | + | chr2_4:60784151-60784170 | None:intergenic | 25.0% |
| AGTTAACAGTATGAGTGTTA+GGG | + | chr2_4:60781665-60781684 | None:intergenic | 30.0% | |
| TAGTTAACAGTATGAGTGTT+AGG | + | chr2_4:60781666-60781685 | None:intergenic | 30.0% | |
| ACTCTTTCTGACAATATGAA+AGG | + | chr2_4:60781954-60781973 | None:intergenic | 30.0% | |
| !! | GTTATCATGGTTGATTCTTT+TGG | - | chr2_4:60782257-60782276 | Msa0339580:intron | 30.0% |
| !! | TATCATGGTTGATTCTTTTG+GGG | - | chr2_4:60782259-60782278 | Msa0339580:intron | 30.0% |
| TCTTAGCTAGGGAAAAATAA+TGG | - | chr2_4:60782436-60782455 | Msa0339580:intron | 30.0% | |
| ! | ATCTGGATTCTCTCATTTTA+GGG | - | chr2_4:60782474-60782493 | Msa0339580:intron | 30.0% |
| TATTTATCAAAGTCTGAACG+CGG | + | chr2_4:60782556-60782575 | None:intergenic | 30.0% | |
| ! | GTATCATCATCTTTGCATTT+TGG | + | chr2_4:60782582-60782601 | None:intergenic | 30.0% |
| !! | CTTGATTTGTCAGTATAGAT+CGG | - | chr2_4:60782616-60782635 | Msa0339580:intron | 30.0% |
| !! | TTTCATTGACTTTGATAGGA+GGG | + | chr2_4:60782786-60782805 | None:intergenic | 30.0% |
| !! | AGTCTTTCATTGACTTTGAT+AGG | + | chr2_4:60782790-60782809 | None:intergenic | 30.0% |
| ACACATAACCTTTCAATTCA+AGG | - | chr2_4:60782876-60782895 | Msa0339580:intron | 30.0% | |
| CACATAACCTTTCAATTCAA+GGG | - | chr2_4:60782877-60782896 | Msa0339580:intron | 30.0% | |
| ATTTAGTCCCTTGAATTGAA+AGG | + | chr2_4:60782887-60782906 | None:intergenic | 30.0% | |
| TTCTGTTTCGTAAATTTGAG+GGG | - | chr2_4:60782907-60782926 | Msa0339580:intron | 30.0% | |
| AAGACTATCTCTCATTAACA+AGG | + | chr2_4:60783014-60783033 | None:intergenic | 30.0% | |
| GTATATGTTGGAACAGAATA+CGG | - | chr2_4:60783179-60783198 | Msa0339580:intron | 30.0% | |
| TATATGTTGGAACAGAATAC+GGG | - | chr2_4:60783180-60783199 | Msa0339580:intron | 30.0% | |
| GGAAATGAATTTGTAAAAGC+TGG | - | chr2_4:60783399-60783418 | Msa0339580:intron | 30.0% | |
| ! | TGTGTACACTTTCTTTTAGA+CGG | - | chr2_4:60783432-60783451 | Msa0339580:intron | 30.0% |
| TTTACCTGAATGAACTGAAT+TGG | - | chr2_4:60783685-60783704 | Msa0339580:intron | 30.0% | |
| GGGTTGAATTGTATTACTAT+TGG | - | chr2_4:60783741-60783760 | Msa0339580:intron | 30.0% | |
| TATAATACTCAGTTACTCGA+CGG | + | chr2_4:60784088-60784107 | None:intergenic | 30.0% | |
| AAAAATGTCCTATGCATGAC+AGG | - | chr2_4:60781584-60781603 | Msa0339580:three_prime_UTR | 35.0% | |
| ATGTAGTATCTAGCTAGCAA+GGG | + | chr2_4:60781641-60781660 | None:intergenic | 35.0% | |
| AATGTAGTATCTAGCTAGCA+AGG | + | chr2_4:60781642-60781661 | None:intergenic | 35.0% | |
| TCAACAGCTAGATTAAGGAA+AGG | + | chr2_4:60781796-60781815 | None:intergenic | 35.0% | |
| TTCCTTAATCTAGCTGTTGA+TGG | - | chr2_4:60781796-60781815 | Msa0339580:three_prime_UTR | 35.0% | |
| AACCATCAACAGCTAGATTA+AGG | + | chr2_4:60781801-60781820 | None:intergenic | 35.0% | |
| !! | GTTGATGGTTTCTTGAAGAT+TGG | - | chr2_4:60781811-60781830 | Msa0339580:three_prime_UTR | 35.0% |
| ! | TGAAAAAGAAGAAGGTTGGT+TGG | + | chr2_4:60781899-60781918 | None:intergenic | 35.0% |
| ! | AACCAACCTTCTTCTTTTTC+AGG | - | chr2_4:60781898-60781917 | Msa0339580:three_prime_UTR | 35.0% |
| AACCTGAAAAAGAAGAAGGT+TGG | + | chr2_4:60781903-60781922 | None:intergenic | 35.0% | |
| TAACAAAACATGTCTGTTCC+AGG | - | chr2_4:60782170-60782189 | Msa0339580:CDS | 35.0% | |
| TCATTACTTGAAACACTTCC+TGG | + | chr2_4:60782191-60782210 | None:intergenic | 35.0% | |
| CTTATCTAAGAGTAGAGTGT+TGG | - | chr2_4:60782399-60782418 | Msa0339580:intron | 35.0% | |
| !! | TAAGAGTAGAGTGTTGGATT+GGG | - | chr2_4:60782405-60782424 | Msa0339580:intron | 35.0% |
| ! | GATCTGGATTCTCTCATTTT+AGG | - | chr2_4:60782473-60782492 | Msa0339580:intron | 35.0% |
| ATTTATCAAAGTCTGAACGC+GGG | + | chr2_4:60782555-60782574 | None:intergenic | 35.0% | |
| GCGTTCAGACTTTGATAAAT+AGG | - | chr2_4:60782555-60782574 | Msa0339580:CDS | 35.0% | |
| TCTAAATTCTCAAAAGGGCA+TGG | - | chr2_4:60782668-60782687 | Msa0339580:intron | 35.0% | |
| ! | CTAAATTCTCAAAAGGGCAT+GGG | - | chr2_4:60782669-60782688 | Msa0339580:intron | 35.0% |
| !! | CTTTCATTGACTTTGATAGG+AGG | + | chr2_4:60782787-60782806 | None:intergenic | 35.0% |
| ! | AACCAGCTTGTACAATTTTG+AGG | - | chr2_4:60782938-60782957 | Msa0339580:intron | 35.0% |
| ATATGTTGGAACAGAATACG+GGG | - | chr2_4:60783181-60783200 | Msa0339580:intron | 35.0% | |
| ACTGGGTAATTCTCTCAATA+GGG | - | chr2_4:60783228-60783247 | Msa0339580:intron | 35.0% | |
| GCAGTACATCAAAAGACAAA+GGG | + | chr2_4:60783531-60783550 | None:intergenic | 35.0% | |
| TGCAGTACATCAAAAGACAA+AGG | + | chr2_4:60783532-60783551 | None:intergenic | 35.0% | |
| !!! | CTTGTCTTTTTTGTTGTTGC+TGG | + | chr2_4:60783605-60783624 | None:intergenic | 35.0% |
| TTCAGTTCATTCAGGTAAAG+TGG | + | chr2_4:60783684-60783703 | None:intergenic | 35.0% | |
| ACATCCAATTCAGTTCATTC+AGG | + | chr2_4:60783692-60783711 | None:intergenic | 35.0% | |
| ACACTACAAAGCAAATGAGA+AGG | - | chr2_4:60783853-60783872 | Msa0339580:intron | 35.0% | |
| TGACAAGACTAGAATATGTC+TGG | + | chr2_4:60784047-60784066 | None:intergenic | 35.0% | |
| AAAGCAATCCTGTCATGCAT+AGG | + | chr2_4:60781595-60781614 | None:intergenic | 40.0% | |
| AGTGAGTGTGAAAAATGCCT+TGG | - | chr2_4:60781710-60781729 | Msa0339580:three_prime_UTR | 40.0% | |
| CTGCAACCTGAAAAAGAAGA+AGG | + | chr2_4:60781907-60781926 | None:intergenic | 40.0% | |
| CAAAAGGGCTATAGCAAAAG+TGG | + | chr2_4:60781987-60782006 | None:intergenic | 40.0% | |
| !! | CTAAGAGTAGAGTGTTGGAT+TGG | - | chr2_4:60782404-60782423 | Msa0339580:intron | 40.0% |
| AGCTAGGGAAAAATAATGGC+AGG | - | chr2_4:60782440-60782459 | Msa0339580:intron | 40.0% | |
| GCTAGGGAAAAATAATGGCA+GGG | - | chr2_4:60782441-60782460 | Msa0339580:intron | 40.0% | |
| ATGAGAGAATCCAGATCTAG+AGG | + | chr2_4:60782470-60782489 | None:intergenic | 40.0% | |
| TTTCGGTCTTCGAAATTGCA+AGG | - | chr2_4:60782713-60782732 | Msa0339580:intron | 40.0% | |
| GTGTAGCACCACAATTTCAA+AGG | + | chr2_4:60782860-60782879 | None:intergenic | 40.0% | |
| GTCCTCAAAATTGTACAAGC+TGG | + | chr2_4:60782943-60782962 | None:intergenic | 40.0% | |
| ! | ATTTTCCTTTCTACGCTCAC+AGG | - | chr2_4:60783143-60783162 | Msa0339580:intron | 40.0% |
| GACTGGGTAATTCTCTCAAT+AGG | - | chr2_4:60783227-60783246 | Msa0339580:intron | 40.0% | |
| TGGACTTGTCGTTAACATGA+TGG | - | chr2_4:60783329-60783348 | Msa0339580:intron | 40.0% | |
| TCAGTTGAGAGTCTTACCTA+AGG | - | chr2_4:60783494-60783513 | Msa0339580:intron | 40.0% | |
| AAAAGACAAAGGGAACAGAG+TGG | + | chr2_4:60783521-60783540 | None:intergenic | 40.0% | |
| ATTGCAGTAGATGCCATTAC+AGG | - | chr2_4:60783625-60783644 | Msa0339580:intron | 40.0% | |
| TTGCAGTAGATGCCATTACA+GGG | - | chr2_4:60783626-60783645 | Msa0339580:intron | 40.0% | |
| GTTTATGAATTCTGCAGCAG+TGG | + | chr2_4:60783662-60783681 | None:intergenic | 40.0% | |
| AAACAAAGGATTGGACGATC+TGG | + | chr2_4:60783787-60783806 | None:intergenic | 40.0% | |
| CTAGAATATGTCTGGTGGTA+CGG | + | chr2_4:60784039-60784058 | None:intergenic | 40.0% | |
| CAAGACTAGAATATGTCTGG+TGG | + | chr2_4:60784044-60784063 | None:intergenic | 40.0% | |
| ATGCCTTGGAGCAGAATTTC+CGG | - | chr2_4:60781724-60781743 | Msa0339580:three_prime_UTR | 45.0% | |
| GTGGATGTGGACATAGACAT+GGG | - | chr2_4:60781766-60781785 | Msa0339580:three_prime_UTR | 45.0% | |
| !!! | TTTTTCAGGTTGCAGCTACG+AGG | - | chr2_4:60781912-60781931 | Msa0339580:three_prime_UTR | 45.0% |
| !!! | TTTTCAGGTTGCAGCTACGA+GGG | - | chr2_4:60781913-60781932 | Msa0339580:three_prime_UTR | 45.0% |
| !! | TGGGAGGTTTAGTCTTAGCT+AGG | - | chr2_4:60782424-60782443 | Msa0339580:intron | 45.0% |
| !! | GGGAGGTTTAGTCTTAGCTA+GGG | - | chr2_4:60782425-60782444 | Msa0339580:intron | 45.0% |
| CTGAAGAAGATGTGCAAGGA+AGG | - | chr2_4:60783041-60783060 | Msa0339580:intron | 45.0% | |
| TGAGAGAATTACCCAGTCTC+TGG | + | chr2_4:60783225-60783244 | None:intergenic | 45.0% | |
| GGGTAATTCTCTCAATAGGG+TGG | - | chr2_4:60783231-60783250 | Msa0339580:intron | 45.0% | |
| CTGCAGAAGAATGCCATGAT+CGG | - | chr2_4:60783547-60783566 | Msa0339580:CDS | 45.0% | |
| TGCAGTAGATGCCATTACAG+GGG | - | chr2_4:60783627-60783646 | Msa0339580:intron | 45.0% | |
| ATTCTTTACTCAGCCTCTCC+AGG | - | chr2_4:60783980-60783999 | Msa0339580:CDS | 45.0% | |
| ATAAAGAGTCCTCAGTAGCC+TGG | + | chr2_4:60784001-60784020 | None:intergenic | 45.0% | |
| TGCCTTGGAGCAGAATTTCC+GGG | - | chr2_4:60781725-60781744 | Msa0339580:three_prime_UTR | 50.0% | |
| TCTATGTCCACATCCACCTG+TGG | + | chr2_4:60781763-60781782 | None:intergenic | 50.0% | |
| GGTGGATGTGGACATAGACA+TGG | - | chr2_4:60781765-60781784 | Msa0339580:three_prime_UTR | 50.0% | |
| !! | GAGTAGAGTGTTGGATTGGG+AGG | - | chr2_4:60782408-60782427 | Msa0339580:intron | 50.0% |
| GCAGCTGAAGAAGATGTGCA+AGG | - | chr2_4:60783037-60783056 | Msa0339580:intron | 50.0% | |
| ! | TGTGCAAGGAAGGTGCATAC+TGG | - | chr2_4:60783051-60783070 | Msa0339580:intron | 50.0% |
| ! | GTGCAAGGAAGGTGCATACT+GGG | - | chr2_4:60783052-60783071 | Msa0339580:intron | 50.0% |
| ! | TGCAAGGAAGGTGCATACTG+GGG | - | chr2_4:60783053-60783072 | Msa0339580:intron | 50.0% |
| TAGCTCCTGTGAGCGTAGAA+AGG | + | chr2_4:60783151-60783170 | None:intergenic | 50.0% | |
| TCTACGCTCACAGGAGCTAT+AGG | - | chr2_4:60783152-60783171 | Msa0339580:intron | 50.0% | |
| GCTATAGGCGGCGTATATGT+TGG | - | chr2_4:60783167-60783186 | Msa0339580:intron | 50.0% | |
| GAACAGAATACGGGGTAGAG+AGG | - | chr2_4:60783189-60783208 | Msa0339580:intron | 50.0% | |
| AAGGGAACAGAGTGGTCCTT+AGG | + | chr2_4:60783513-60783532 | None:intergenic | 50.0% | |
| CAGAAGAATGCCATGATCGG+AGG | - | chr2_4:60783550-60783569 | Msa0339580:CDS | 50.0% | |
| ACCTCTAGTCCTTCACTCGA+AGG | - | chr2_4:60783925-60783944 | Msa0339580:intron | 50.0% | |
| TCCTTCGAGTGAAGGACTAG+AGG | + | chr2_4:60783929-60783948 | None:intergenic | 50.0% | |
| GGATGAAGTCCTTCGAGTGA+AGG | + | chr2_4:60783937-60783956 | None:intergenic | 50.0% | |
| GACCCGGAAATTCTGCTCCA+AGG | + | chr2_4:60781730-60781749 | None:intergenic | 55.0% | |
| CTGTGGAGAAGACACTGACC+CGG | + | chr2_4:60781746-60781765 | None:intergenic | 55.0% | |
| GTCAGTGTCTTCTCCACAGG+TGG | - | chr2_4:60781747-60781766 | Msa0339580:three_prime_UTR | 55.0% | |
| GTCTTCTCCACAGGTGGATG+TGG | - | chr2_4:60781753-60781772 | Msa0339580:three_prime_UTR | 55.0% | |
| GGCAGGGAAACCTCTAGATC+TGG | - | chr2_4:60782457-60782476 | Msa0339580:intron | 55.0% | |
| ACGCTCACAGGAGCTATAGG+CGG | - | chr2_4:60783155-60783174 | Msa0339580:intron | 55.0% | |
| ! | TTACCCAGTCTCTGGTGCCA+CGG | + | chr2_4:60783217-60783236 | None:intergenic | 55.0% |
| GAATGCCATGATCGGAGGTG+CGG | - | chr2_4:60783555-60783574 | Msa0339580:intron | 55.0% | |
| GGCAATTGCAGCCCCTGTAA+TGG | + | chr2_4:60783641-60783660 | None:intergenic | 55.0% | |
| ACTCAGTTACTCGACGGAGC+AGG | + | chr2_4:60784082-60784101 | None:intergenic | 55.0% | |
| CGGGTCAGTGTCTTCTCCAC+AGG | - | chr2_4:60781744-60781763 | Msa0339580:three_prime_UTR | 60.0% | |
| !! | AGCTACGAGGGCACTTGCAG+AGG | - | chr2_4:60781925-60781944 | Msa0339580:three_prime_UTR | 60.0% |
| TACGGGGTAGAGAGGATCCG+TGG | - | chr2_4:60783197-60783216 | Msa0339580:intron | 60.0% | |
| GATCCGTGGCACCAGAGACT+GGG | - | chr2_4:60783211-60783230 | Msa0339580:intron | 60.0% | |
| TGTCACCGCACCTCCGATCA+TGG | + | chr2_4:60783563-60783582 | None:intergenic | 60.0% | |
| ! | ATGATCGGAGGTGCGGTGAC+AGG | - | chr2_4:60783562-60783581 | Msa0339580:intron | 60.0% |
| ! | TGATCGGAGGTGCGGTGACA+GGG | - | chr2_4:60783563-60783582 | Msa0339580:intron | 60.0% |
| TCAGCCTCTCCAGGCTACTG+AGG | - | chr2_4:60783989-60784008 | Msa0339580:CDS | 60.0% | |
| GAGTCCTCAGTAGCCTGGAG+AGG | + | chr2_4:60783996-60784015 | None:intergenic | 60.0% | |
| GGATCCGTGGCACCAGAGAC+TGG | - | chr2_4:60783210-60783229 | Msa0339580:intron | 65.0% | |
| ! | GATCGGAGGTGCGGTGACAG+GGG | - | chr2_4:60783564-60783583 | Msa0339580:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 60781583 | 60784180 | 60781583 | ID=Msa0339580;Name=Msa0339580 |
| chr2_4 | mRNA | 60781583 | 60784180 | 60781583 | ID=Msa0339580-mRNA-1;Parent=Msa0339580;Name=Msa0339580-mRNA-1;_AED=0.07;_eAED=0.07;_QI=141|1|1|1|1|1|6|487|146 |
| chr2_4 | exon | 60781583 | 60782210 | 60781583 | ID=Msa0339580-mRNA-1:exon:18941;Parent=Msa0339580-mRNA-1 |
| chr2_4 | exon | 60782531 | 60782598 | 60782531 | ID=Msa0339580-mRNA-1:exon:18940;Parent=Msa0339580-mRNA-1 |
| chr2_4 | exon | 60782689 | 60782722 | 60782689 | ID=Msa0339580-mRNA-1:exon:18939;Parent=Msa0339580-mRNA-1 |
| chr2_4 | exon | 60783540 | 60783571 | 60783540 | ID=Msa0339580-mRNA-1:exon:18938;Parent=Msa0339580-mRNA-1 |
| chr2_4 | exon | 60783792 | 60783843 | 60783792 | ID=Msa0339580-mRNA-1:exon:18937;Parent=Msa0339580-mRNA-1 |
| chr2_4 | exon | 60783926 | 60784180 | 60783926 | ID=Msa0339580-mRNA-1:exon:18936;Parent=Msa0339580-mRNA-1 |
| chr2_4 | five_prime_UTR | 60784040 | 60784180 | 60784040 | ID=Msa0339580-mRNA-1:five_prime_utr;Parent=Msa0339580-mRNA-1 |
| chr2_4 | CDS | 60783926 | 60784039 | 60783926 | ID=Msa0339580-mRNA-1:cds;Parent=Msa0339580-mRNA-1 |
| chr2_4 | CDS | 60783792 | 60783843 | 60783792 | ID=Msa0339580-mRNA-1:cds;Parent=Msa0339580-mRNA-1 |
| chr2_4 | CDS | 60783540 | 60783571 | 60783540 | ID=Msa0339580-mRNA-1:cds;Parent=Msa0339580-mRNA-1 |
| chr2_4 | CDS | 60782689 | 60782722 | 60782689 | ID=Msa0339580-mRNA-1:cds;Parent=Msa0339580-mRNA-1 |
| chr2_4 | CDS | 60782531 | 60782598 | 60782531 | ID=Msa0339580-mRNA-1:cds;Parent=Msa0339580-mRNA-1 |
| chr2_4 | CDS | 60782070 | 60782210 | 60782070 | ID=Msa0339580-mRNA-1:cds;Parent=Msa0339580-mRNA-1 |
| chr2_4 | three_prime_UTR | 60781583 | 60782069 | 60781583 | ID=Msa0339580-mRNA-1:three_prime_utr;Parent=Msa0339580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
