Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348190 | KEH32901.1 | 94.309 | 246 | 14 | 0 | 3 | 248 | 174 | 419 | 6.89e-167 | 479 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348190 | sp|Q94BZ1|ZIFL1_ARATH | 48.988 | 247 | 123 | 2 | 3 | 246 | 186 | 432 | 3.35e-82 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348190 | A0A072UU86 | 94.309 | 246 | 14 | 0 | 3 | 248 | 174 | 419 | 3.29e-167 | 479 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0348190 | Msa1339590 | 0.801171 | 1.021249e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348190 | MtrunA17_Chr3g0080431 | 94.694 | 245 | 13 | 0 | 4 | 248 | 187 | 431 | 8.18e-171 | 479 |
| Msa0348190 | MtrunA17_Chr8g0354841 | 61.847 | 249 | 89 | 2 | 3 | 248 | 184 | 429 | 5.04e-113 | 333 |
| Msa0348190 | MtrunA17_Chr8g0354831 | 59.438 | 249 | 98 | 1 | 3 | 248 | 188 | 436 | 7.01e-112 | 330 |
| Msa0348190 | MtrunA17_Chr3g0080421 | 63.200 | 250 | 88 | 2 | 3 | 248 | 187 | 436 | 4.49e-111 | 328 |
| Msa0348190 | MtrunA17_Chr8g0354861 | 60.081 | 248 | 93 | 2 | 4 | 248 | 44 | 288 | 8.33e-111 | 321 |
| Msa0348190 | MtrunA17_Chr8g0354891 | 61.847 | 249 | 89 | 2 | 3 | 248 | 188 | 433 | 5.94e-110 | 325 |
| Msa0348190 | MtrunA17_Chr8g0354851 | 59.438 | 249 | 95 | 2 | 3 | 248 | 184 | 429 | 1.11e-107 | 320 |
| Msa0348190 | MtrunA17_Chr8g0364441 | 54.217 | 249 | 72 | 4 | 4 | 248 | 227 | 437 | 8.48e-84 | 257 |
| Msa0348190 | MtrunA17_Chr3g0123441 | 71.875 | 96 | 27 | 0 | 153 | 248 | 1 | 96 | 3.72e-41 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348190 | AT5G13750.2 | 48.988 | 247 | 123 | 2 | 3 | 246 | 100 | 346 | 7.79e-85 | 258 |
| Msa0348190 | AT5G13750.1 | 48.988 | 247 | 123 | 2 | 3 | 246 | 186 | 432 | 3.40e-83 | 256 |
| Msa0348190 | AT5G13740.2 | 49.412 | 255 | 117 | 3 | 3 | 246 | 187 | 440 | 4.08e-79 | 245 |
| Msa0348190 | AT5G13740.1 | 49.412 | 255 | 117 | 3 | 3 | 246 | 187 | 440 | 1.13e-78 | 245 |
| Msa0348190 | AT3G43790.1 | 46.825 | 252 | 127 | 3 | 3 | 248 | 185 | 435 | 1.88e-74 | 234 |
| Msa0348190 | AT3G43790.4 | 46.825 | 252 | 127 | 3 | 3 | 248 | 185 | 435 | 1.88e-74 | 234 |
| Msa0348190 | AT3G43790.2 | 46.825 | 252 | 127 | 3 | 3 | 248 | 185 | 435 | 1.96e-74 | 234 |
| Msa0348190 | AT3G43790.3 | 46.825 | 252 | 127 | 3 | 3 | 248 | 185 | 435 | 1.96e-74 | 234 |
| Msa0348190 | AT5G13750.3 | 46.429 | 224 | 117 | 2 | 3 | 223 | 186 | 409 | 3.91e-71 | 223 |
| Msa0348190 | AT5G13750.4 | 46.429 | 224 | 117 | 2 | 3 | 223 | 186 | 409 | 3.91e-71 | 223 |
| Msa0348190 | AT3G43790.5 | 44.595 | 222 | 116 | 3 | 3 | 218 | 185 | 405 | 2.05e-60 | 196 |
| Msa0348190 | AT5G13940.1 | 43.023 | 86 | 33 | 1 | 84 | 169 | 159 | 228 | 2.47e-16 | 78.6 |
| Msa0348190 | AT5G13940.2 | 43.023 | 86 | 33 | 1 | 84 | 169 | 8 | 77 | 2.47e-16 | 78.6 |
Find 49 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCCTTTGGAAATATATT+TGG | 0.129831 | 3_1:-10050355 | None:intergenic |
| AAAATTGAAGCTTTAGAAAA+TGG | 0.231093 | 3_1:+10050782 | Msa0348190:CDS |
| AATCAAAAGATTCTTTAAAA+TGG | 0.235629 | 3_1:-10051619 | None:intergenic |
| AACAATGATAGATGACATTA+AGG | 0.236048 | 3_1:-10050867 | None:intergenic |
| ATATTTGGATATTTCTGTTC+TGG | 0.279974 | 3_1:-10050340 | None:intergenic |
| AGCAATATTCTTGCAGTATC+AGG | 0.312398 | 3_1:+10051116 | Msa0348190:CDS |
| CGAGGACTTTCAGCCCATAA+TGG | 0.328190 | 3_1:-10051056 | None:intergenic |
| TATTTCCAAAGGATTCCTTT+TGG | 0.334733 | 3_1:+10050362 | Msa0348190:CDS |
| AAGGGGAAGCTTTGCAAGAT+TGG | 0.344833 | 3_1:-10051546 | None:intergenic |
| ATGTCAGCATGCAAGGTAAT+TGG | 0.364337 | 3_1:+10051988 | Msa0348190:CDS |
| TTATCCCAAAAGGAATCCTT+TGG | 0.364927 | 3_1:-10050367 | None:intergenic |
| TAGTAGCAATTTCCTGCATT+TGG | 0.367001 | 3_1:+10050542 | Msa0348190:CDS |
| ATGAAGCACGACAAGAAGTA+TGG | 0.369305 | 3_1:-10050499 | None:intergenic |
| ATCGTTCTTGCTCGCATCGC+AGG | 0.378324 | 3_1:+10051415 | Msa0348190:CDS |
| GAGGACTTTCAGCCCATAAT+GGG | 0.387135 | 3_1:-10051055 | None:intergenic |
| CACATTGCGCCGCCTCCAGC+TGG | 0.389601 | 3_1:-10052012 | None:intergenic |
| CCCTTCATGACAATGTTGTC+CGG | 0.397110 | 3_1:+10051564 | Msa0348190:CDS |
| TATAATAATACCTCTGCAAA+AGG | 0.446389 | 3_1:-10050917 | None:intergenic |
| AGGTTAGGCGGTTTGAACTT+TGG | 0.449468 | 3_1:+10051080 | Msa0348190:CDS |
| TCGTTCTTGCTCGCATCGCA+GGG | 0.456280 | 3_1:+10051416 | Msa0348190:CDS |
| AATTTCCTGCATTTGGCTAC+CGG | 0.465212 | 3_1:+10050549 | Msa0348190:CDS |
| GCTGAAAGTCCTCGAAGGTT+AGG | 0.476875 | 3_1:+10051065 | Msa0348190:CDS |
| TTCAAACCGCCTAACCTTCG+AGG | 0.482253 | 3_1:-10051074 | None:intergenic |
| TGCAAGGTAATTGGTCCAGC+TGG | 0.484350 | 3_1:+10051997 | Msa0348190:CDS |
| CATCAAAGAGGGGTAGCAAA+TGG | 0.491220 | 3_1:+10051949 | Msa0348190:CDS |
| CTGGTTGATATAAGCCAAGC+TGG | 0.503616 | 3_1:-10051372 | None:intergenic |
| GCCGGACAACATTGTCATGA+AGG | 0.514462 | 3_1:-10051565 | None:intergenic |
| ACCCACTTACTTATCCCAAA+AGG | 0.517614 | 3_1:-10050377 | None:intergenic |
| AACAGGATCAACATCAAAGA+GGG | 0.518590 | 3_1:+10051938 | Msa0348190:intron |
| ACAATGATAGATGACATTAA+GGG | 0.519109 | 3_1:-10050866 | None:intergenic |
| AACTGCTATGTCAGCATGCA+AGG | 0.527847 | 3_1:+10051981 | Msa0348190:CDS |
| GGTATTATAATGTTCCAGCT+TGG | 0.527966 | 3_1:+10051358 | Msa0348190:CDS |
| AATTAGGAGATAATTTCTAC+TGG | 0.534952 | 3_1:+10051791 | Msa0348190:intron |
| GTGCTTCATTGTATCAGCTA+TGG | 0.544076 | 3_1:+10050513 | Msa0348190:CDS |
| ACATACCGGTAGCCAAATGC+AGG | 0.555495 | 3_1:-10050554 | None:intergenic |
| CCGGACAACATTGTCATGAA+GGG | 0.560290 | 3_1:-10051564 | None:intergenic |
| CGATATGTACAGTGTAAAGC+CGG | 0.571487 | 3_1:-10051583 | None:intergenic |
| GTAATTGGTCCAGCTGGAGG+CGG | 0.574346 | 3_1:+10052003 | Msa0348190:CDS |
| ATATCCAAATATATTTCCAA+AGG | 0.595947 | 3_1:+10050351 | Msa0348190:CDS |
| GCGATGCGAGCAAGAACGAT+AGG | 0.621644 | 3_1:-10051412 | None:intergenic |
| CGTTCTTGCTCGCATCGCAG+GGG | 0.626575 | 3_1:+10051417 | Msa0348190:CDS |
| AAACAGGATCAACATCAAAG+AGG | 0.635198 | 3_1:+10051937 | Msa0348190:intron |
| GAAAGTCCTCGAAGGTTAGG+CGG | 0.636675 | 3_1:+10051068 | Msa0348190:CDS |
| CGGACAACATTGTCATGAAG+GGG | 0.639468 | 3_1:-10051563 | None:intergenic |
| AAGGTAATTGGTCCAGCTGG+AGG | 0.645237 | 3_1:+10052000 | Msa0348190:CDS |
| CATTCTGCAAAATAGAGCAG+TGG | 0.649579 | 3_1:+10051820 | Msa0348190:CDS |
| TATGGGCTGAAAGTCCTCGA+AGG | 0.690573 | 3_1:+10051060 | Msa0348190:CDS |
| ACAGGATCAACATCAAAGAG+GGG | 0.699202 | 3_1:+10051939 | Msa0348190:intron |
| TTTAGAAAATGGAACCAACG+AGG | 0.747436 | 3_1:+10050793 | Msa0348190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTAGATATTTATTAAGAAT+AGG | + | chr3_1:10051162-10051181 | Msa0348190:intron | 15.0% |
| !!! | AATCAAAAGATTCTTTAAAA+TGG | - | chr3_1:10051622-10051641 | None:intergenic | 15.0% |
| !! | TCTAGATATTTATTAAGAAT+AGG | + | chr3_1:10051162-10051181 | Msa0348190:intron | 15.0% |
| !!! | AATCAAAAGATTCTTTAAAA+TGG | - | chr3_1:10051622-10051641 | None:intergenic | 15.0% |
| !! | ATATCCAAATATATTTCCAA+AGG | + | chr3_1:10050351-10050370 | Msa0348190:CDS | 20.0% |
| !! | ATAAAAAGGATACTGAAATA+TGG | - | chr3_1:10050671-10050690 | None:intergenic | 20.0% |
| !!! | AAAATTGAAGCTTTAGAAAA+TGG | + | chr3_1:10050782-10050801 | Msa0348190:CDS | 20.0% |
| !!! | TACATGACTTATATTTTTTC+CGG | + | chr3_1:10051913-10051932 | Msa0348190:intron | 20.0% |
| !! | ATATCCAAATATATTTCCAA+AGG | + | chr3_1:10050351-10050370 | Msa0348190:CDS | 20.0% |
| !! | ATAAAAAGGATACTGAAATA+TGG | - | chr3_1:10050671-10050690 | None:intergenic | 20.0% |
| !!! | AAAATTGAAGCTTTAGAAAA+TGG | + | chr3_1:10050782-10050801 | Msa0348190:CDS | 20.0% |
| !!! | TACATGACTTATATTTTTTC+CGG | + | chr3_1:10051913-10051932 | Msa0348190:intron | 20.0% |
| !! | ATATTTGGATATTTCTGTTC+TGG | - | chr3_1:10050343-10050362 | None:intergenic | 25.0% |
| !! | GAATCCTTTGGAAATATATT+TGG | - | chr3_1:10050358-10050377 | None:intergenic | 25.0% |
| ! | TTAGAATTCAAGATACATAC+CGG | - | chr3_1:10050571-10050590 | None:intergenic | 25.0% |
| !! | ATTTCAGTATCCTTTTTATG+TGG | + | chr3_1:10050672-10050691 | Msa0348190:intron | 25.0% |
| !! | TATCCTTTTTATGTGGTTTT+CGG | + | chr3_1:10050679-10050698 | Msa0348190:intron | 25.0% |
| !!! | TTTAGATCATTAGTACTGAT+AGG | - | chr3_1:10050711-10050730 | None:intergenic | 25.0% |
| !!! | TTCTAAAGCTTCAATTTTGT+TGG | - | chr3_1:10050780-10050799 | None:intergenic | 25.0% |
| ! | ACAATGATAGATGACATTAA+GGG | - | chr3_1:10050869-10050888 | None:intergenic | 25.0% |
| ! | AACAATGATAGATGACATTA+AGG | - | chr3_1:10050870-10050889 | None:intergenic | 25.0% |
| ! | TATAATAATACCTCTGCAAA+AGG | - | chr3_1:10050920-10050939 | None:intergenic | 25.0% |
| ! | AAACAGAAACATCTTTAAGT+AGG | - | chr3_1:10050948-10050967 | None:intergenic | 25.0% |
| !!! | TTTTGAAGATTTTCCCATTA+TGG | + | chr3_1:10051042-10051061 | Msa0348190:intron | 25.0% |
| !! | TTTGAAGATTTTCCCATTAT+GGG | + | chr3_1:10051043-10051062 | Msa0348190:intron | 25.0% |
| !! | GAACCATATTAAATTTGTTC+AGG | + | chr3_1:10051331-10051350 | Msa0348190:intron | 25.0% |
| ! | ACACCTGAACAAATTTAATA+TGG | - | chr3_1:10051337-10051356 | None:intergenic | 25.0% |
| !! | TATTAAATTTGTTCAGGTGT+CGG | + | chr3_1:10051337-10051356 | Msa0348190:intron | 25.0% |
| ! | CCATCAAAAAGAAATCAATT+AGG | - | chr3_1:10051771-10051790 | None:intergenic | 25.0% |
| !!! | CCTAATTGATTTCTTTTTGA+TGG | + | chr3_1:10051768-10051787 | Msa0348190:intron | 25.0% |
| !! | GATTTCTTTTTGATGGAATT+AGG | + | chr3_1:10051775-10051794 | Msa0348190:intron | 25.0% |
| ! | AATTAGGAGATAATTTCTAC+TGG | + | chr3_1:10051791-10051810 | Msa0348190:intron | 25.0% |
| !!! | TTCATACAGAACTTTTTCAA+GGG | - | chr3_1:10051880-10051899 | None:intergenic | 25.0% |
| !!! | TTTCATACAGAACTTTTTCA+AGG | - | chr3_1:10051881-10051900 | None:intergenic | 25.0% |
| !!! | TTATATTTTTTCCGGAAAAC+AGG | + | chr3_1:10051921-10051940 | Msa0348190:intron | 25.0% |
| !! | ATATTTGGATATTTCTGTTC+TGG | - | chr3_1:10050343-10050362 | None:intergenic | 25.0% |
| !! | GAATCCTTTGGAAATATATT+TGG | - | chr3_1:10050358-10050377 | None:intergenic | 25.0% |
| ! | TTAGAATTCAAGATACATAC+CGG | - | chr3_1:10050571-10050590 | None:intergenic | 25.0% |
| !! | ATTTCAGTATCCTTTTTATG+TGG | + | chr3_1:10050672-10050691 | Msa0348190:intron | 25.0% |
| !! | TATCCTTTTTATGTGGTTTT+CGG | + | chr3_1:10050679-10050698 | Msa0348190:intron | 25.0% |
| !!! | TTTAGATCATTAGTACTGAT+AGG | - | chr3_1:10050711-10050730 | None:intergenic | 25.0% |
| !!! | TTCTAAAGCTTCAATTTTGT+TGG | - | chr3_1:10050780-10050799 | None:intergenic | 25.0% |
| ! | ACAATGATAGATGACATTAA+GGG | - | chr3_1:10050869-10050888 | None:intergenic | 25.0% |
| ! | AACAATGATAGATGACATTA+AGG | - | chr3_1:10050870-10050889 | None:intergenic | 25.0% |
| ! | TATAATAATACCTCTGCAAA+AGG | - | chr3_1:10050920-10050939 | None:intergenic | 25.0% |
| ! | AAACAGAAACATCTTTAAGT+AGG | - | chr3_1:10050948-10050967 | None:intergenic | 25.0% |
| !!! | TTTTGAAGATTTTCCCATTA+TGG | + | chr3_1:10051042-10051061 | Msa0348190:intron | 25.0% |
| !! | TTTGAAGATTTTCCCATTAT+GGG | + | chr3_1:10051043-10051062 | Msa0348190:intron | 25.0% |
| !! | GAACCATATTAAATTTGTTC+AGG | + | chr3_1:10051331-10051350 | Msa0348190:intron | 25.0% |
| ! | ACACCTGAACAAATTTAATA+TGG | - | chr3_1:10051337-10051356 | None:intergenic | 25.0% |
| !! | TATTAAATTTGTTCAGGTGT+CGG | + | chr3_1:10051337-10051356 | Msa0348190:intron | 25.0% |
| ! | CCATCAAAAAGAAATCAATT+AGG | - | chr3_1:10051771-10051790 | None:intergenic | 25.0% |
| !!! | CCTAATTGATTTCTTTTTGA+TGG | + | chr3_1:10051768-10051787 | Msa0348190:intron | 25.0% |
| !! | GATTTCTTTTTGATGGAATT+AGG | + | chr3_1:10051775-10051794 | Msa0348190:intron | 25.0% |
| ! | AATTAGGAGATAATTTCTAC+TGG | + | chr3_1:10051791-10051810 | Msa0348190:intron | 25.0% |
| !!! | TTCATACAGAACTTTTTCAA+GGG | - | chr3_1:10051880-10051899 | None:intergenic | 25.0% |
| !!! | TTTCATACAGAACTTTTTCA+AGG | - | chr3_1:10051881-10051900 | None:intergenic | 25.0% |
| !!! | TTATATTTTTTCCGGAAAAC+AGG | + | chr3_1:10051921-10051940 | Msa0348190:intron | 25.0% |
| ! | TATTTCCAAAGGATTCCTTT+TGG | + | chr3_1:10050362-10050381 | Msa0348190:CDS | 30.0% |
| ! | ATTTCCAAAGGATTCCTTTT+GGG | + | chr3_1:10050363-10050382 | Msa0348190:CDS | 30.0% |
| ATATATAGTTGCCCTCTTTA+TGG | + | chr3_1:10050602-10050621 | Msa0348190:intron | 30.0% | |
| TAAGTCACATACCATAAAGA+GGG | - | chr3_1:10050616-10050635 | None:intergenic | 30.0% | |
| ATAAGTCACATACCATAAAG+AGG | - | chr3_1:10050617-10050636 | None:intergenic | 30.0% | |
| AAACCGAAAACCACATAAAA+AGG | - | chr3_1:10050685-10050704 | None:intergenic | 30.0% | |
| ATGAAAGCCTCCTAAAAAAT+TGG | + | chr3_1:10050843-10050862 | Msa0348190:CDS | 30.0% | |
| !!! | ACATTAAGGGCCAATTTTTT+AGG | - | chr3_1:10050856-10050875 | None:intergenic | 30.0% |
| TATCATTCGTTGGAGATAAA+GGG | - | chr3_1:10051207-10051226 | None:intergenic | 30.0% | |
| CTTGATCGATGAATCAAAAA+TGG | + | chr3_1:10051278-10051297 | Msa0348190:intron | 30.0% | |
| ATCTGAGTATTTGTCACAAA+AGG | - | chr3_1:10051460-10051479 | None:intergenic | 30.0% | |
| !!! | TCATACAGAACTTTTTCAAG+GGG | - | chr3_1:10051879-10051898 | None:intergenic | 30.0% |
| ! | TATTTCCAAAGGATTCCTTT+TGG | + | chr3_1:10050362-10050381 | Msa0348190:CDS | 30.0% |
| ! | ATTTCCAAAGGATTCCTTTT+GGG | + | chr3_1:10050363-10050382 | Msa0348190:CDS | 30.0% |
| ATATATAGTTGCCCTCTTTA+TGG | + | chr3_1:10050602-10050621 | Msa0348190:intron | 30.0% | |
| TAAGTCACATACCATAAAGA+GGG | - | chr3_1:10050616-10050635 | None:intergenic | 30.0% | |
| ATAAGTCACATACCATAAAG+AGG | - | chr3_1:10050617-10050636 | None:intergenic | 30.0% | |
| AAACCGAAAACCACATAAAA+AGG | - | chr3_1:10050685-10050704 | None:intergenic | 30.0% | |
| ATGAAAGCCTCCTAAAAAAT+TGG | + | chr3_1:10050843-10050862 | Msa0348190:CDS | 30.0% | |
| !!! | ACATTAAGGGCCAATTTTTT+AGG | - | chr3_1:10050856-10050875 | None:intergenic | 30.0% |
| TATCATTCGTTGGAGATAAA+GGG | - | chr3_1:10051207-10051226 | None:intergenic | 30.0% | |
| CTTGATCGATGAATCAAAAA+TGG | + | chr3_1:10051278-10051297 | Msa0348190:intron | 30.0% | |
| ATCTGAGTATTTGTCACAAA+AGG | - | chr3_1:10051460-10051479 | None:intergenic | 30.0% | |
| !!! | TCATACAGAACTTTTTCAAG+GGG | - | chr3_1:10051879-10051898 | None:intergenic | 30.0% |
| TTATCCCAAAAGGAATCCTT+TGG | - | chr3_1:10050370-10050389 | None:intergenic | 35.0% | |
| !!! | TTCCTTTTGGGATAAGTAAG+TGG | + | chr3_1:10050375-10050394 | Msa0348190:intron | 35.0% |
| !!! | TCCTTTTGGGATAAGTAAGT+GGG | + | chr3_1:10050376-10050395 | Msa0348190:intron | 35.0% |
| TAGTAGCAATTTCCTGCATT+TGG | + | chr3_1:10050542-10050561 | Msa0348190:CDS | 35.0% | |
| TAAAACGTCTTCATCGATGT+AGG | + | chr3_1:10050727-10050746 | Msa0348190:intron | 35.0% | |
| TTTAGAAAATGGAACCAACG+AGG | + | chr3_1:10050793-10050812 | Msa0348190:CDS | 35.0% | |
| !! | CTTATTTTTCTCATCCTCGT+TGG | - | chr3_1:10050810-10050829 | None:intergenic | 35.0% |
| ! | TTAGGAGGCTTTCATCTTTT+TGG | - | chr3_1:10050838-10050857 | None:intergenic | 35.0% |
| !!! | TTAAGGGCCAATTTTTTAGG+AGG | - | chr3_1:10050853-10050872 | None:intergenic | 35.0% |
| AGCAATATTCTTGCAGTATC+AGG | + | chr3_1:10051116-10051135 | Msa0348190:CDS | 35.0% | |
| AGATAAAGGGTTAAGAAGGA+AGG | - | chr3_1:10051194-10051213 | None:intergenic | 35.0% | |
| TTGGAGATAAAGGGTTAAGA+AGG | - | chr3_1:10051198-10051217 | None:intergenic | 35.0% | |
| CTATCATTCGTTGGAGATAA+AGG | - | chr3_1:10051208-10051227 | None:intergenic | 35.0% | |
| GGTATTATAATGTTCCAGCT+TGG | + | chr3_1:10051358-10051377 | Msa0348190:CDS | 35.0% | |
| CAACCAGTGCAAAAAATTTG+TGG | + | chr3_1:10051388-10051407 | Msa0348190:CDS | 35.0% | |
| TGCCTTCATCATATACTTGT+AGG | + | chr3_1:10051512-10051531 | Msa0348190:intron | 35.0% | |
| CACCTACAAGTATATGATGA+AGG | - | chr3_1:10051517-10051536 | None:intergenic | 35.0% | |
| GAGCGATATTGAGATTGAAA+AGG | + | chr3_1:10051673-10051692 | Msa0348190:intron | 35.0% | |
| ! | GAATTGACTTTGCTGAAACT+CGG | + | chr3_1:10051700-10051719 | Msa0348190:intron | 35.0% |
| ! | AATTGACTTTGCTGAAACTC+GGG | + | chr3_1:10051701-10051720 | Msa0348190:intron | 35.0% |
| ! | TTGATGTTGATCCTGTTTTC+CGG | - | chr3_1:10051935-10051954 | None:intergenic | 35.0% |
| AAACAGGATCAACATCAAAG+AGG | + | chr3_1:10051937-10051956 | Msa0348190:intron | 35.0% | |
| AACAGGATCAACATCAAAGA+GGG | + | chr3_1:10051938-10051957 | Msa0348190:intron | 35.0% | |
| TTATCCCAAAAGGAATCCTT+TGG | - | chr3_1:10050370-10050389 | None:intergenic | 35.0% | |
| !!! | TTCCTTTTGGGATAAGTAAG+TGG | + | chr3_1:10050375-10050394 | Msa0348190:intron | 35.0% |
| !!! | TCCTTTTGGGATAAGTAAGT+GGG | + | chr3_1:10050376-10050395 | Msa0348190:intron | 35.0% |
| TAGTAGCAATTTCCTGCATT+TGG | + | chr3_1:10050542-10050561 | Msa0348190:CDS | 35.0% | |
| TAAAACGTCTTCATCGATGT+AGG | + | chr3_1:10050727-10050746 | Msa0348190:intron | 35.0% | |
| TTTAGAAAATGGAACCAACG+AGG | + | chr3_1:10050793-10050812 | Msa0348190:CDS | 35.0% | |
| !! | CTTATTTTTCTCATCCTCGT+TGG | - | chr3_1:10050810-10050829 | None:intergenic | 35.0% |
| ! | TTAGGAGGCTTTCATCTTTT+TGG | - | chr3_1:10050838-10050857 | None:intergenic | 35.0% |
| !!! | TTAAGGGCCAATTTTTTAGG+AGG | - | chr3_1:10050853-10050872 | None:intergenic | 35.0% |
| AGCAATATTCTTGCAGTATC+AGG | + | chr3_1:10051116-10051135 | Msa0348190:CDS | 35.0% | |
| AGATAAAGGGTTAAGAAGGA+AGG | - | chr3_1:10051194-10051213 | None:intergenic | 35.0% | |
| TTGGAGATAAAGGGTTAAGA+AGG | - | chr3_1:10051198-10051217 | None:intergenic | 35.0% | |
| CTATCATTCGTTGGAGATAA+AGG | - | chr3_1:10051208-10051227 | None:intergenic | 35.0% | |
| GGTATTATAATGTTCCAGCT+TGG | + | chr3_1:10051358-10051377 | Msa0348190:CDS | 35.0% | |
| CAACCAGTGCAAAAAATTTG+TGG | + | chr3_1:10051388-10051407 | Msa0348190:CDS | 35.0% | |
| TGCCTTCATCATATACTTGT+AGG | + | chr3_1:10051512-10051531 | Msa0348190:intron | 35.0% | |
| CACCTACAAGTATATGATGA+AGG | - | chr3_1:10051517-10051536 | None:intergenic | 35.0% | |
| GAGCGATATTGAGATTGAAA+AGG | + | chr3_1:10051673-10051692 | Msa0348190:intron | 35.0% | |
| ! | GAATTGACTTTGCTGAAACT+CGG | + | chr3_1:10051700-10051719 | Msa0348190:intron | 35.0% |
| ! | AATTGACTTTGCTGAAACTC+GGG | + | chr3_1:10051701-10051720 | Msa0348190:intron | 35.0% |
| ! | TTGATGTTGATCCTGTTTTC+CGG | - | chr3_1:10051935-10051954 | None:intergenic | 35.0% |
| AAACAGGATCAACATCAAAG+AGG | + | chr3_1:10051937-10051956 | Msa0348190:intron | 35.0% | |
| AACAGGATCAACATCAAAGA+GGG | + | chr3_1:10051938-10051957 | Msa0348190:intron | 35.0% | |
| ACCCACTTACTTATCCCAAA+AGG | - | chr3_1:10050380-10050399 | None:intergenic | 40.0% | |
| ! | AAGAAGTATGGAAACCTGCA+GGG | - | chr3_1:10050490-10050509 | None:intergenic | 40.0% |
| ATGAAGCACGACAAGAAGTA+TGG | - | chr3_1:10050502-10050521 | None:intergenic | 40.0% | |
| GTGCTTCATTGTATCAGCTA+TGG | + | chr3_1:10050513-10050532 | Msa0348190:CDS | 40.0% | |
| AATTTCCTGCATTTGGCTAC+CGG | + | chr3_1:10050549-10050568 | Msa0348190:CDS | 40.0% | |
| ! | TCATGACATTCCTTTTGCAG+AGG | + | chr3_1:10050907-10050926 | Msa0348190:CDS | 40.0% |
| CCGGAAAAGTTTATGTGCAA+GGG | - | chr3_1:10051231-10051250 | None:intergenic | 40.0% | |
| ! | CCCTTGCACATAAACTTTTC+CGG | + | chr3_1:10051228-10051247 | Msa0348190:intron | 40.0% |
| ! | CCTTGCACATAAACTTTTCC+GGG | + | chr3_1:10051229-10051248 | Msa0348190:intron | 40.0% |
| !!! | GGTCCACAAATTTTTTGCAC+TGG | - | chr3_1:10051394-10051413 | None:intergenic | 40.0% |
| CGATATGTACAGTGTAAAGC+CGG | - | chr3_1:10051586-10051605 | None:intergenic | 40.0% | |
| TCAATCTCAATATCGCTCGT+TGG | - | chr3_1:10051671-10051690 | None:intergenic | 40.0% | |
| CATTCTGCAAAATAGAGCAG+TGG | + | chr3_1:10051820-10051839 | Msa0348190:CDS | 40.0% | |
| ACAGGATCAACATCAAAGAG+GGG | + | chr3_1:10051939-10051958 | Msa0348190:intron | 40.0% | |
| ATGTCAGCATGCAAGGTAAT+TGG | + | chr3_1:10051988-10052007 | Msa0348190:CDS | 40.0% | |
| ACCCACTTACTTATCCCAAA+AGG | - | chr3_1:10050380-10050399 | None:intergenic | 40.0% | |
| ! | AAGAAGTATGGAAACCTGCA+GGG | - | chr3_1:10050490-10050509 | None:intergenic | 40.0% |
| ATGAAGCACGACAAGAAGTA+TGG | - | chr3_1:10050502-10050521 | None:intergenic | 40.0% | |
| GTGCTTCATTGTATCAGCTA+TGG | + | chr3_1:10050513-10050532 | Msa0348190:CDS | 40.0% | |
| AATTTCCTGCATTTGGCTAC+CGG | + | chr3_1:10050549-10050568 | Msa0348190:CDS | 40.0% | |
| ! | TCATGACATTCCTTTTGCAG+AGG | + | chr3_1:10050907-10050926 | Msa0348190:CDS | 40.0% |
| CCGGAAAAGTTTATGTGCAA+GGG | - | chr3_1:10051231-10051250 | None:intergenic | 40.0% | |
| ! | CCCTTGCACATAAACTTTTC+CGG | + | chr3_1:10051228-10051247 | Msa0348190:intron | 40.0% |
| ! | CCTTGCACATAAACTTTTCC+GGG | + | chr3_1:10051229-10051248 | Msa0348190:intron | 40.0% |
| !!! | GGTCCACAAATTTTTTGCAC+TGG | - | chr3_1:10051394-10051413 | None:intergenic | 40.0% |
| CGATATGTACAGTGTAAAGC+CGG | - | chr3_1:10051586-10051605 | None:intergenic | 40.0% | |
| TCAATCTCAATATCGCTCGT+TGG | - | chr3_1:10051671-10051690 | None:intergenic | 40.0% | |
| CATTCTGCAAAATAGAGCAG+TGG | + | chr3_1:10051820-10051839 | Msa0348190:CDS | 40.0% | |
| ACAGGATCAACATCAAAGAG+GGG | + | chr3_1:10051939-10051958 | Msa0348190:intron | 40.0% | |
| ATGTCAGCATGCAAGGTAAT+TGG | + | chr3_1:10051988-10052007 | Msa0348190:CDS | 40.0% | |
| CAAAACTTAAACCTCCCTGC+AGG | + | chr3_1:10050473-10050492 | Msa0348190:intron | 45.0% | |
| ! | CAAGAAGTATGGAAACCTGC+AGG | - | chr3_1:10050491-10050510 | None:intergenic | 45.0% |
| GAGGACTTTCAGCCCATAAT+GGG | - | chr3_1:10051058-10051077 | None:intergenic | 45.0% | |
| AGGTTAGGCGGTTTGAACTT+TGG | + | chr3_1:10051080-10051099 | Msa0348190:CDS | 45.0% | |
| CCCGGAAAAGTTTATGTGCA+AGG | - | chr3_1:10051232-10051251 | None:intergenic | 45.0% | |
| CAAATAGCGTCATGTCATCC+CGG | - | chr3_1:10051250-10051269 | None:intergenic | 45.0% | |
| ! | CTGGTTGATATAAGCCAAGC+TGG | - | chr3_1:10051375-10051394 | None:intergenic | 45.0% |
| AAGGGGAAGCTTTGCAAGAT+TGG | - | chr3_1:10051549-10051568 | None:intergenic | 45.0% | |
| CGGACAACATTGTCATGAAG+GGG | - | chr3_1:10051566-10051585 | None:intergenic | 45.0% | |
| CCGGACAACATTGTCATGAA+GGG | - | chr3_1:10051567-10051586 | None:intergenic | 45.0% | |
| CCCTTCATGACAATGTTGTC+CGG | + | chr3_1:10051564-10051583 | Msa0348190:CDS | 45.0% | |
| TTTGCTGAAACTCGGGAGAT+CGG | + | chr3_1:10051708-10051727 | Msa0348190:intron | 45.0% | |
| CATCAAAGAGGGGTAGCAAA+TGG | + | chr3_1:10051949-10051968 | Msa0348190:CDS | 45.0% | |
| AACTGCTATGTCAGCATGCA+AGG | + | chr3_1:10051981-10052000 | Msa0348190:CDS | 45.0% | |
| CAAAACTTAAACCTCCCTGC+AGG | + | chr3_1:10050473-10050492 | Msa0348190:intron | 45.0% | |
| ! | CAAGAAGTATGGAAACCTGC+AGG | - | chr3_1:10050491-10050510 | None:intergenic | 45.0% |
| GAGGACTTTCAGCCCATAAT+GGG | - | chr3_1:10051058-10051077 | None:intergenic | 45.0% | |
| AGGTTAGGCGGTTTGAACTT+TGG | + | chr3_1:10051080-10051099 | Msa0348190:CDS | 45.0% | |
| CCCGGAAAAGTTTATGTGCA+AGG | - | chr3_1:10051232-10051251 | None:intergenic | 45.0% | |
| CAAATAGCGTCATGTCATCC+CGG | - | chr3_1:10051250-10051269 | None:intergenic | 45.0% | |
| ! | CTGGTTGATATAAGCCAAGC+TGG | - | chr3_1:10051375-10051394 | None:intergenic | 45.0% |
| AAGGGGAAGCTTTGCAAGAT+TGG | - | chr3_1:10051549-10051568 | None:intergenic | 45.0% | |
| CGGACAACATTGTCATGAAG+GGG | - | chr3_1:10051566-10051585 | None:intergenic | 45.0% | |
| CCGGACAACATTGTCATGAA+GGG | - | chr3_1:10051567-10051586 | None:intergenic | 45.0% | |
| CCCTTCATGACAATGTTGTC+CGG | + | chr3_1:10051564-10051583 | Msa0348190:CDS | 45.0% | |
| TTTGCTGAAACTCGGGAGAT+CGG | + | chr3_1:10051708-10051727 | Msa0348190:intron | 45.0% | |
| CATCAAAGAGGGGTAGCAAA+TGG | + | chr3_1:10051949-10051968 | Msa0348190:CDS | 45.0% | |
| AACTGCTATGTCAGCATGCA+AGG | + | chr3_1:10051981-10052000 | Msa0348190:CDS | 45.0% | |
| AAGTATGGAAACCTGCAGGG+AGG | - | chr3_1:10050487-10050506 | None:intergenic | 50.0% | |
| ACATACCGGTAGCCAAATGC+AGG | - | chr3_1:10050557-10050576 | None:intergenic | 50.0% | |
| CGAGGACTTTCAGCCCATAA+TGG | - | chr3_1:10051059-10051078 | None:intergenic | 50.0% | |
| ! | TATGGGCTGAAAGTCCTCGA+AGG | + | chr3_1:10051060-10051079 | Msa0348190:CDS | 50.0% |
| GCTGAAAGTCCTCGAAGGTT+AGG | + | chr3_1:10051065-10051084 | Msa0348190:CDS | 50.0% | |
| GAAAGTCCTCGAAGGTTAGG+CGG | + | chr3_1:10051068-10051087 | Msa0348190:CDS | 50.0% | |
| TTCAAACCGCCTAACCTTCG+AGG | - | chr3_1:10051077-10051096 | None:intergenic | 50.0% | |
| GTGCAAGGGCTATCATTCGT+TGG | - | chr3_1:10051217-10051236 | None:intergenic | 50.0% | |
| CGGGATGACATGACGCTATT+TGG | + | chr3_1:10051248-10051267 | Msa0348190:intron | 50.0% | |
| GCCGGACAACATTGTCATGA+AGG | - | chr3_1:10051568-10051587 | None:intergenic | 50.0% | |
| TGCAAGGTAATTGGTCCAGC+TGG | + | chr3_1:10051997-10052016 | Msa0348190:CDS | 50.0% | |
| AAGGTAATTGGTCCAGCTGG+AGG | + | chr3_1:10052000-10052019 | Msa0348190:CDS | 50.0% | |
| AAGTATGGAAACCTGCAGGG+AGG | - | chr3_1:10050487-10050506 | None:intergenic | 50.0% | |
| ACATACCGGTAGCCAAATGC+AGG | - | chr3_1:10050557-10050576 | None:intergenic | 50.0% | |
| CGAGGACTTTCAGCCCATAA+TGG | - | chr3_1:10051059-10051078 | None:intergenic | 50.0% | |
| ! | TATGGGCTGAAAGTCCTCGA+AGG | + | chr3_1:10051060-10051079 | Msa0348190:CDS | 50.0% |
| GCTGAAAGTCCTCGAAGGTT+AGG | + | chr3_1:10051065-10051084 | Msa0348190:CDS | 50.0% | |
| GAAAGTCCTCGAAGGTTAGG+CGG | + | chr3_1:10051068-10051087 | Msa0348190:CDS | 50.0% | |
| TTCAAACCGCCTAACCTTCG+AGG | - | chr3_1:10051077-10051096 | None:intergenic | 50.0% | |
| GTGCAAGGGCTATCATTCGT+TGG | - | chr3_1:10051217-10051236 | None:intergenic | 50.0% | |
| CGGGATGACATGACGCTATT+TGG | + | chr3_1:10051248-10051267 | Msa0348190:intron | 50.0% | |
| GCCGGACAACATTGTCATGA+AGG | - | chr3_1:10051568-10051587 | None:intergenic | 50.0% | |
| TGCAAGGTAATTGGTCCAGC+TGG | + | chr3_1:10051997-10052016 | Msa0348190:CDS | 50.0% | |
| AAGGTAATTGGTCCAGCTGG+AGG | + | chr3_1:10052000-10052019 | Msa0348190:CDS | 50.0% | |
| GCGATGCGAGCAAGAACGAT+AGG | - | chr3_1:10051415-10051434 | None:intergenic | 55.0% | |
| ATCGTTCTTGCTCGCATCGC+AGG | + | chr3_1:10051415-10051434 | Msa0348190:CDS | 55.0% | |
| TCGTTCTTGCTCGCATCGCA+GGG | + | chr3_1:10051416-10051435 | Msa0348190:CDS | 55.0% | |
| GTAATTGGTCCAGCTGGAGG+CGG | + | chr3_1:10052003-10052022 | Msa0348190:CDS | 55.0% | |
| GCGATGCGAGCAAGAACGAT+AGG | - | chr3_1:10051415-10051434 | None:intergenic | 55.0% | |
| ATCGTTCTTGCTCGCATCGC+AGG | + | chr3_1:10051415-10051434 | Msa0348190:CDS | 55.0% | |
| TCGTTCTTGCTCGCATCGCA+GGG | + | chr3_1:10051416-10051435 | Msa0348190:CDS | 55.0% | |
| GTAATTGGTCCAGCTGGAGG+CGG | + | chr3_1:10052003-10052022 | Msa0348190:CDS | 55.0% | |
| CGTTCTTGCTCGCATCGCAG+GGG | + | chr3_1:10051417-10051436 | Msa0348190:CDS | 60.0% | |
| CGTTCTTGCTCGCATCGCAG+GGG | + | chr3_1:10051417-10051436 | Msa0348190:CDS | 60.0% | |
| CACATTGCGCCGCCTCCAGC+TGG | - | chr3_1:10052015-10052034 | None:intergenic | 70.0% | |
| CACATTGCGCCGCCTCCAGC+TGG | - | chr3_1:10052015-10052034 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 10050319 | 10052035 | 10050319 | ID=Msa0348190;Name=Msa0348190 |
| chr3_1 | mRNA | 10050319 | 10052035 | 10050319 | ID=Msa0348190-mRNA-1;Parent=Msa0348190;Name=Msa0348190-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|1|1|8|0|248 |
| chr3_1 | exon | 10050319 | 10050389 | 10050319 | ID=Msa0348190-mRNA-1:exon:2800;Parent=Msa0348190-mRNA-1 |
| chr3_1 | exon | 10050495 | 10050570 | 10050495 | ID=Msa0348190-mRNA-1:exon:2801;Parent=Msa0348190-mRNA-1 |
| chr3_1 | exon | 10050749 | 10050928 | 10050749 | ID=Msa0348190-mRNA-1:exon:2802;Parent=Msa0348190-mRNA-1 |
| chr3_1 | exon | 10051050 | 10051137 | 10051050 | ID=Msa0348190-mRNA-1:exon:2803;Parent=Msa0348190-mRNA-1 |
| chr3_1 | exon | 10051353 | 10051438 | 10051353 | ID=Msa0348190-mRNA-1:exon:2804;Parent=Msa0348190-mRNA-1 |
| chr3_1 | exon | 10051534 | 10051641 | 10051534 | ID=Msa0348190-mRNA-1:exon:2805;Parent=Msa0348190-mRNA-1 |
| chr3_1 | exon | 10051797 | 10051841 | 10051797 | ID=Msa0348190-mRNA-1:exon:2806;Parent=Msa0348190-mRNA-1 |
| chr3_1 | exon | 10051943 | 10052035 | 10051943 | ID=Msa0348190-mRNA-1:exon:2807;Parent=Msa0348190-mRNA-1 |
| chr3_1 | CDS | 10050319 | 10050389 | 10050319 | ID=Msa0348190-mRNA-1:cds;Parent=Msa0348190-mRNA-1 |
| chr3_1 | CDS | 10050495 | 10050570 | 10050495 | ID=Msa0348190-mRNA-1:cds;Parent=Msa0348190-mRNA-1 |
| chr3_1 | CDS | 10050749 | 10050928 | 10050749 | ID=Msa0348190-mRNA-1:cds;Parent=Msa0348190-mRNA-1 |
| chr3_1 | CDS | 10051050 | 10051137 | 10051050 | ID=Msa0348190-mRNA-1:cds;Parent=Msa0348190-mRNA-1 |
| chr3_1 | CDS | 10051353 | 10051438 | 10051353 | ID=Msa0348190-mRNA-1:cds;Parent=Msa0348190-mRNA-1 |
| chr3_1 | CDS | 10051534 | 10051641 | 10051534 | ID=Msa0348190-mRNA-1:cds;Parent=Msa0348190-mRNA-1 |
| chr3_1 | CDS | 10051797 | 10051841 | 10051797 | ID=Msa0348190-mRNA-1:cds;Parent=Msa0348190-mRNA-1 |
| chr3_1 | CDS | 10051943 | 10052035 | 10051943 | ID=Msa0348190-mRNA-1:cds;Parent=Msa0348190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
