AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0351370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0351370 MtrunA17_Chr3g0086371 98.851 261 3 0 1 261 1 261 0.0 513
Msa0351370 MtrunA17_Chr3g0105881 36.400 250 153 4 15 260 148 395 4.59e-49 166
Msa0351370 MtrunA17_Chr5g0407461 41.317 167 97 1 35 201 269 434 3.69e-31 121
Msa0351370 MtrunA17_Chr5g0407461 40.000 160 95 1 59 218 269 427 5.32e-23 97.8
Msa0351370 MtrunA17_Chr5g0407461 31.472 197 109 2 27 198 330 525 1.49e-17 82.0
Msa0351370 MtrunA17_Chr8g0370111 40.268 149 89 0 53 201 275 423 3.69e-26 107
Msa0351370 MtrunA17_Chr8g0370111 38.690 168 102 1 34 201 280 446 8.17e-23 97.4
Msa0351370 MtrunA17_Chr8g0370111 37.324 142 88 1 77 218 276 416 4.32e-20 89.4
Msa0351370 MtrunA17_Chr8g0370111 33.161 193 121 5 32 220 324 512 7.11e-19 85.9
Msa0351370 MtrunA17_Chr4g0054721 33.333 177 117 1 25 201 222 397 5.17e-23 97.8
Msa0351370 MtrunA17_Chr4g0054721 36.420 162 102 1 59 220 209 369 3.76e-22 95.1
Msa0351370 MtrunA17_Chr4g0054721 35.897 156 100 0 46 201 219 374 1.02e-20 90.9
Msa0351370 MtrunA17_Chr4g0054721 31.683 202 112 2 27 203 270 470 1.76e-17 81.6
Msa0351370 MtrunA17_Chr4g0054721 30.357 224 144 5 22 234 234 456 8.43e-17 79.7
Msa0351370 MtrunA17_Chr2g0317831 29.665 209 128 2 37 226 2 210 1.07e-21 94.0
Msa0351370 MtrunA17_Chr2g0317831 28.431 204 121 2 24 203 73 275 1.55e-13 70.1
Msa0351370 MtrunA17_Chr2g0317831 31.100 209 138 5 13 218 354 559 5.33e-11 62.4
Msa0351370 MtrunA17_Chr4g0058541 36.585 164 97 3 70 227 206 368 2.42e-21 92.8
Msa0351370 MtrunA17_Chr4g0058541 28.346 254 129 5 3 204 183 435 2.07e-17 81.3
Msa0351370 MtrunA17_Chr4g0058541 33.333 171 108 3 49 216 208 375 1.97e-16 78.6
Msa0351370 MtrunA17_Chr5g0412701 30.085 236 133 5 31 236 161 394 3.75e-18 83.6
Msa0351370 MtrunA17_Chr6g0464211 32.597 181 115 7 46 219 110 290 1.76e-17 82.0
Msa0351370 MtrunA17_Chr3g0116991 31.928 166 106 3 68 227 201 365 2.41e-16 78.2
Msa0351370 MtrunA17_Chr3g0116991 32.903 155 100 2 44 197 200 351 4.44e-16 77.4
Msa0351370 MtrunA17_Chr3g0116991 34.641 153 96 3 31 180 280 431 3.60e-15 74.7
Msa0351370 MtrunA17_Chr3g0116991 28.632 234 154 6 27 249 253 484 8.07e-15 73.9
Msa0351370 MtrunA17_Chr5g0439291 33.708 178 112 6 45 216 230 407 8.11e-16 77.0
Msa0351370 MtrunA17_Chr5g0439291 31.383 188 99 6 36 194 127 313 5.74e-12 65.5
Msa0351370 MtrunA17_Chr1g0165141 29.572 257 138 11 34 253 237 487 1.03e-15 76.6
Msa0351370 MtrunA17_Chr7g0241921 33.166 199 126 7 25 216 385 583 1.67e-15 76.3
Msa0351370 MtrunA17_Chr7g0250471 32.487 197 124 7 59 247 279 474 6.57e-15 74.3
Msa0351370 MtrunA17_Chr7g0250471 33.129 163 100 8 46 201 481 641 2.58e-11 63.5
Msa0351370 MtrunA17_Chr1g0165221 29.130 230 154 8 32 253 259 487 1.07e-14 73.6
Msa0351370 MtrunA17_Chr1g0165221 33.166 199 101 8 36 203 119 316 5.28e-13 68.6
Msa0351370 MtrunA17_Chr1g0165221 31.771 192 124 7 34 219 213 403 5.32e-12 65.9
Msa0351370 MtrunA17_Chr1g0165221 31.395 172 110 8 34 198 237 407 2.81e-11 63.5
Msa0351370 MtrunA17_Chr7g0233881 29.388 245 137 10 36 247 129 370 1.13e-14 73.6
Msa0351370 MtrunA17_Chr2g0312651 34.518 197 96 8 34 198 474 669 1.22e-14 73.6
Msa0351370 MtrunA17_Chr2g0298891 30.522 249 139 7 1 218 20 265 1.22e-14 72.8
Msa0351370 MtrunA17_Chr2g0298891 31.461 178 118 3 24 198 93 269 3.13e-13 68.6
Msa0351370 MtrunA17_Chr2g0298891 31.677 161 104 4 44 198 135 295 8.60e-12 64.3
Msa0351370 MtrunA17_Chr4g0071581 36.257 171 106 3 24 192 30 199 1.66e-14 72.4
Msa0351370 MtrunA17_Chr4g0071581 34.667 150 94 3 32 178 108 256 4.50e-14 70.9
Msa0351370 MtrunA17_Chr4g0071581 31.313 198 110 3 27 198 56 253 4.77e-14 70.9
Msa0351370 MtrunA17_Chr4g0071581 31.098 164 111 2 40 201 22 185 3.96e-13 68.2
Msa0351370 MtrunA17_Chr5g0447001 32.536 209 125 10 36 230 144 350 1.96e-14 72.8
Msa0351370 MtrunA17_Chr5g0447001 34.756 164 100 7 59 216 264 426 1.76e-12 67.0
Msa0351370 MtrunA17_Chr5g0447001 31.138 167 110 5 58 219 215 381 1.44e-11 64.3
Msa0351370 MtrunA17_Chr3g0127671 33.696 184 112 8 59 236 173 352 5.11e-14 71.6
Msa0351370 MtrunA17_Chr8g0363851 33.333 195 103 5 30 198 545 738 7.43e-14 71.2
Msa0351370 MtrunA17_Chr8g0363851 31.677 161 107 3 29 187 661 820 2.65e-11 63.5
Msa0351370 MtrunA17_Chr7g0257621 29.798 198 130 7 44 232 134 331 7.86e-14 71.2
Msa0351370 MtrunA17_Chr1g0165191 30.841 214 139 7 25 232 346 556 8.41e-14 71.2
Msa0351370 MtrunA17_Chr5g0440211 33.862 189 116 9 38 219 90 276 8.85e-14 70.9
Msa0351370 MtrunA17_Chr5g0408581 33.333 180 113 7 44 216 428 607 1.20e-13 70.5
Msa0351370 MtrunA17_Chr7g0232171 33.508 191 96 8 59 219 295 484 1.23e-13 70.5
Msa0351370 MtrunA17_Chr7g0232211 33.508 191 96 8 59 219 286 475 1.68e-13 70.1
Msa0351370 MtrunA17_Chr7g0237821 37.222 180 105 8 49 221 342 520 2.16e-13 69.7
Msa0351370 MtrunA17_Chr7g0237821 33.702 181 111 8 34 206 111 290 9.48e-13 67.8
Msa0351370 MtrunA17_Chr7g0237821 29.146 199 131 9 29 219 130 326 8.06e-11 62.0
Msa0351370 MtrunA17_Chr7g0232131 35.938 192 111 11 38 219 248 437 2.26e-13 69.7
Msa0351370 MtrunA17_Chr7g0232131 31.278 227 145 9 36 253 321 545 1.19e-12 67.8
Msa0351370 MtrunA17_Chr7g0232131 31.776 214 136 10 14 219 370 581 6.10e-12 65.5
Msa0351370 MtrunA17_Chr5g0419721 32.990 194 120 9 34 219 146 337 2.33e-13 69.7
Msa0351370 MtrunA17_Chr2g0284121 33.333 189 114 8 35 216 323 506 2.38e-13 69.7
Msa0351370 MtrunA17_Chr8g0380941 29.302 215 120 7 36 219 369 582 2.45e-13 69.7
Msa0351370 MtrunA17_Chr8g0363891 29.952 207 115 6 56 233 58 263 3.47e-13 68.9
Msa0351370 MtrunA17_Chr8g0363891 29.845 258 119 8 30 226 80 336 1.51e-12 67.4
Msa0351370 MtrunA17_Chr8g0363891 31.915 188 99 5 32 192 176 361 3.06e-11 63.2
Msa0351370 MtrunA17_Chr7g0250381 33.735 166 101 7 34 191 106 270 3.59e-13 69.3
Msa0351370 MtrunA17_Chr7g0250381 27.854 219 142 7 59 261 277 495 5.77e-11 62.4
Msa0351370 MtrunA17_Chr1g0169841 35.928 167 100 7 34 194 143 308 4.29e-13 68.9
Msa0351370 MtrunA17_Chr1g0169841 31.795 195 123 7 24 212 181 371 2.75e-12 66.6
Msa0351370 MtrunA17_Chr1g0169841 37.671 146 87 4 77 218 91 236 9.16e-12 65.1
Msa0351370 MtrunA17_Chr7g0217081 35.625 160 96 7 49 201 164 323 4.42e-13 68.9
Msa0351370 MtrunA17_Chr4g0058861 32.161 199 126 7 34 223 375 573 4.80e-13 68.9
Msa0351370 MtrunA17_Chr8g0354031 37.692 130 76 5 45 169 230 359 4.83e-13 68.6
Msa0351370 MtrunA17_Chr8g0372351 40.299 134 75 5 59 187 128 261 5.08e-13 68.2
Msa0351370 MtrunA17_Chr7g0232601 29.091 220 125 6 59 247 48 267 7.44e-13 68.2
Msa0351370 MtrunA17_Chr7g0232601 30.256 195 127 7 66 252 7 200 9.33e-11 61.6
Msa0351370 MtrunA17_Chr5g0440221 31.548 168 108 7 58 219 109 275 7.79e-13 68.2
Msa0351370 MtrunA17_Chr3g0112511 27.700 213 144 4 20 223 553 764 8.50e-13 68.2
Msa0351370 MtrunA17_Chr1g0204461 30.319 188 99 8 45 201 254 440 9.09e-13 67.8
Msa0351370 MtrunA17_Chr1g0204461 31.068 206 132 10 22 219 326 529 2.29e-11 63.9
Msa0351370 MtrunA17_Chr8g0354041 36.923 130 77 5 45 169 232 361 9.34e-13 67.8
Msa0351370 MtrunA17_Chr2g0285811 27.039 233 138 8 1 201 117 349 1.07e-12 67.4
Msa0351370 MtrunA17_Chr3g0127701 33.152 184 113 8 59 236 131 310 1.15e-12 67.8
Msa0351370 MtrunA17_Chr2g0291771 33.146 178 105 9 36 203 120 293 1.32e-12 67.4
Msa0351370 MtrunA17_Chr5g0429421 31.818 198 118 9 46 227 111 307 1.59e-12 67.0
Msa0351370 MtrunA17_Chr8g0366461 32.597 181 115 7 46 219 104 284 1.62e-12 67.4
Msa0351370 MtrunA17_Chr1g0165971 27.500 240 142 7 46 253 176 415 1.65e-12 67.0
Msa0351370 MtrunA17_Chr8g0358821 30.000 190 126 7 36 219 113 301 2.05e-12 67.0
Msa0351370 MtrunA17_Chr7g0250491 31.795 195 123 8 34 219 118 311 2.17e-12 67.0
Msa0351370 MtrunA17_Chr5g0403401 34.066 182 112 8 46 219 98 279 2.46e-12 66.6
Msa0351370 MtrunA17_Chr5g0403401 28.302 212 121 6 36 216 360 571 4.03e-11 63.2
Msa0351370 MtrunA17_Chr4g0073641 31.579 190 122 7 34 216 321 509 2.54e-12 66.6
Msa0351370 MtrunA17_Chr1g0196001 30.435 207 127 10 46 235 103 309 2.75e-12 66.6
Msa0351370 MtrunA17_Chr4g0052921 33.117 154 97 6 45 192 419 572 3.02e-12 66.6
Msa0351370 MtrunA17_Chr5g0408811 27.434 226 153 8 24 238 334 559 3.04e-12 66.2
Msa0351370 MtrunA17_Chr1g0159871 34.392 189 115 9 36 216 290 477 3.11e-12 66.2
Msa0351370 MtrunA17_Chr1g0190411 31.928 166 108 5 59 219 260 425 3.77e-12 66.2
Msa0351370 MtrunA17_Chr5g0440231 34.731 167 102 7 59 219 110 275 4.28e-12 65.9
Msa0351370 MtrunA17_Chr1g0165211 28.505 214 122 7 36 219 354 566 5.35e-12 65.9
Msa0351370 MtrunA17_Chr3g0089591 32.927 164 101 6 79 237 593 752 5.44e-12 65.9
Msa0351370 MtrunA17_Chr3g0142271 35.829 187 110 9 38 216 486 670 5.85e-12 65.5
Msa0351370 MtrunA17_Chr3g0142271 32.787 183 96 6 35 213 339 498 1.14e-11 64.7
Msa0351370 MtrunA17_Chr6g0464161 29.101 189 125 8 36 216 101 288 6.30e-12 65.5
Msa0351370 MtrunA17_Chr6g0487031 33.533 167 103 7 35 194 113 278 7.28e-12 65.1
Msa0351370 MtrunA17_Chr8g0358791 30.526 190 125 7 36 219 117 305 7.48e-12 64.7
Msa0351370 MtrunA17_Chr1g0183231 30.769 208 132 10 36 233 229 434 8.49e-12 65.1
Msa0351370 MtrunA17_Chr5g0436841 32.450 151 95 6 58 201 160 310 8.65e-12 65.1
Msa0351370 MtrunA17_Chr5g0440191 32.143 168 107 7 58 219 110 276 8.73e-12 65.1
Msa0351370 MtrunA17_Chr2g0314001 29.808 208 108 9 59 229 284 490 1.26e-11 64.7
Msa0351370 MtrunA17_Chr5g0400681 32.039 206 131 8 19 216 186 390 1.26e-11 64.7
Msa0351370 MtrunA17_Chr8g0348541 43.119 109 60 2 79 185 715 823 1.65e-11 64.3
Msa0351370 MtrunA17_Chr6g0487061 31.214 173 109 8 35 198 115 286 1.83e-11 63.9
Msa0351370 MtrunA17_Chr3g0102901 29.167 216 145 8 11 219 316 530 2.22e-11 63.9
Msa0351370 MtrunA17_Chr3g0113221 27.397 219 122 7 34 216 259 476 2.36e-11 63.5
Msa0351370 MtrunA17_Chr7g0222321 33.871 186 109 10 34 211 388 567 2.47e-11 63.5
Msa0351370 MtrunA17_Chr2g0304981 28.947 190 128 7 36 219 108 296 2.50e-11 63.5
Msa0351370 MtrunA17_Chr6g0464171 29.630 189 124 8 36 216 372 559 2.74e-11 63.5
Msa0351370 MtrunA17_Chr8g0354061 36.923 130 77 5 45 169 233 362 2.83e-11 63.5
Msa0351370 MtrunA17_Chr5g0400701 33.803 142 87 4 58 192 180 321 2.88e-11 63.5
Msa0351370 MtrunA17_Chr4g0012841 29.858 211 137 10 16 218 261 468 3.12e-11 63.2
Msa0351370 MtrunA17_Chr4g0018801 28.696 230 149 12 34 250 141 368 3.14e-11 63.2
Msa0351370 MtrunA17_Chr2g0314031 28.505 214 129 9 34 229 279 486 3.22e-11 63.2
Msa0351370 MtrunA17_Chr5g0420311 33.088 136 84 5 44 172 113 248 3.60e-11 62.0
Msa0351370 MtrunA17_Chr1g0151041 33.714 175 107 9 49 216 188 360 3.80e-11 63.2
Msa0351370 MtrunA17_Chr1g0151041 32.990 194 120 10 13 198 56 247 5.40e-11 62.8
Msa0351370 MtrunA17_Chr2g0296601 34.066 182 104 10 59 226 181 360 4.45e-11 62.8
Msa0351370 MtrunA17_Chr4g0019371 31.034 174 105 8 64 231 182 346 4.55e-11 62.8
Msa0351370 MtrunA17_Chr7g0248201 34.815 135 83 4 68 197 87 221 4.65e-11 61.2
Msa0351370 MtrunA17_Chr3g0128731 31.319 182 116 8 44 218 402 581 5.00e-11 62.8
Msa0351370 MtrunA17_Chr3g0140861 31.720 186 116 8 44 219 141 325 5.02e-11 62.8
Msa0351370 MtrunA17_Chr6g0464141 28.571 189 126 8 36 216 372 559 5.48e-11 62.8
Msa0351370 MtrunA17_Chr5g0437331 30.189 212 132 10 34 231 285 494 5.71e-11 62.4
Msa0351370 MtrunA17_Chr7g0250351 28.090 178 122 5 76 247 90 267 6.05e-11 62.4
Msa0351370 MtrunA17_Chr7g0248261 29.032 217 138 10 14 215 86 301 6.20e-11 62.4
Msa0351370 MtrunA17_Chr5g0408611 27.778 216 144 9 36 240 360 574 6.63e-11 62.4
Msa0351370 MtrunA17_Chr1g0203631 31.633 196 124 9 36 223 254 447 7.15e-11 62.4
Msa0351370 MtrunA17_Chr7g0245221 37.255 153 86 7 73 215 108 260 7.67e-11 62.0
Msa0351370 MtrunA17_Chr1g0165281 29.670 182 122 6 46 221 137 318 7.68e-11 62.0
Msa0351370 MtrunA17_Chr1g0165241 29.670 182 122 6 46 221 137 318 7.68e-11 62.0
Msa0351370 MtrunA17_Chr1g0165311 29.670 182 122 6 46 221 137 318 7.68e-11 62.0
Msa0351370 MtrunA17_Chr8g0367351 30.928 194 118 10 34 216 414 602 7.98e-11 62.0
Msa0351370 MtrunA17_Chr1g0165921 34.356 163 100 7 46 201 95 257 8.53e-11 62.0
Msa0351370 MtrunA17_Chr5g0405191 31.737 167 107 7 34 194 326 491 8.60e-11 62.0
Msa0351370 MtrunA17_Chr7g0217061 33.714 175 108 8 34 201 117 290 8.73e-11 62.0
Msa0351370 MtrunA17_Chr8g0380951 31.902 163 104 7 36 192 387 548 9.01e-11 62.0
Msa0351370 MtrunA17_Chr2g0296591 28.421 190 105 7 44 202 358 547 9.13e-11 62.0
Msa0351370 MtrunA17_Chr5g0408431 26.141 241 123 6 36 221 370 610 9.79e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0351370 AT5G07910.1 75.862 261 62 1 1 260 1 261 1.27e-129 368
Msa0351370 AT2G30105.1 37.751 249 151 2 15 260 124 371 8.12e-53 176
Msa0351370 AT2G17440.1 40.351 171 101 1 31 201 218 387 2.87e-27 110
Msa0351370 AT2G17440.1 32.203 177 117 2 27 201 306 481 1.12e-16 79.7
Msa0351370 AT2G17440.1 32.667 150 77 3 90 216 207 355 1.63e-11 64.3
Msa0351370 AT4G35470.1 38.926 149 91 0 53 201 255 403 5.98e-24 100
Msa0351370 AT4G35470.1 28.571 217 129 3 45 235 270 486 9.04e-17 80.1
Msa0351370 AT4G35470.1 29.000 200 116 2 27 201 299 497 6.47e-14 71.6
Msa0351370 AT4G35470.2 38.926 149 91 0 53 201 255 403 6.06e-24 100
Msa0351370 AT4G35470.2 28.571 217 129 3 45 235 270 486 7.42e-17 80.1
Msa0351370 AT4G35470.2 29.000 200 116 2 27 201 299 497 7.45e-14 71.2
Msa0351370 AT3G15410.1 30.851 188 117 1 37 211 2 189 1.65e-20 90.9
Msa0351370 AT3G15410.1 29.412 204 119 2 24 203 72 274 2.26e-18 84.7
Msa0351370 AT3G26500.1 30.952 210 133 4 29 227 117 325 2.16e-19 87.4
Msa0351370 AT3G26500.1 31.401 207 135 5 19 220 180 384 4.83e-19 86.3
Msa0351370 AT3G15410.2 29.897 194 117 2 37 211 2 195 1.57e-18 85.1
Msa0351370 AT3G15410.2 29.412 204 119 2 24 203 78 280 1.86e-18 85.1
Msa0351370 AT1G12970.1 36.364 165 98 3 69 227 163 326 1.82e-18 84.7
Msa0351370 AT1G12970.1 32.258 155 104 1 46 199 163 317 3.79e-15 75.1
Msa0351370 AT1G12970.1 31.579 209 114 5 22 202 184 391 1.06e-14 73.6
Msa0351370 AT1G12970.1 32.099 162 106 3 24 182 234 394 4.11e-13 68.9
Msa0351370 AT3G11330.1 35.570 149 94 2 69 216 200 347 3.84e-17 80.9
Msa0351370 AT3G11330.1 29.952 207 118 4 24 204 225 430 2.08e-14 72.8
Msa0351370 AT3G11330.1 31.169 154 105 1 46 198 200 353 3.95e-13 69.3
Msa0351370 AT3G11330.1 27.528 178 102 3 4 155 251 427 1.74e-11 64.3
Msa0351370 AT4G26050.1 31.120 241 138 6 45 259 81 319 4.81e-17 80.1
Msa0351370 AT4G26050.1 31.902 163 109 2 41 201 54 216 1.24e-13 70.5
Msa0351370 AT5G05850.1 35.294 153 87 3 75 216 202 353 3.09e-16 78.2
Msa0351370 AT5G05850.1 29.825 228 110 4 25 203 209 435 6.08e-15 74.7
Msa0351370 AT5G05850.1 34.677 124 81 0 95 218 209 332 8.54e-13 68.2
Msa0351370 AT5G17680.1 33.333 198 102 7 30 201 706 899 5.83e-16 77.8
Msa0351370 AT5G17680.1 28.774 212 129 7 21 211 807 1017 2.23e-12 67.4
Msa0351370 AT5G17680.2 33.333 198 102 7 30 201 707 900 6.17e-16 77.8
Msa0351370 AT5G17680.2 28.774 212 129 7 21 211 808 1018 2.40e-12 67.0
Msa0351370 AT3G47570.1 33.333 192 122 6 36 221 353 544 4.25e-15 75.5
Msa0351370 AT1G71400.1 36.111 180 101 9 64 229 104 283 4.55e-14 72.0
Msa0351370 AT5G46330.2 32.683 205 106 8 46 219 98 301 6.16e-14 72.0
Msa0351370 AT5G46330.2 35.429 175 105 8 49 216 221 394 6.16e-14 72.0
Msa0351370 AT5G46330.1 32.683 205 106 8 46 219 98 301 6.16e-14 72.0
Msa0351370 AT5G46330.1 35.429 175 105 8 49 216 221 394 6.16e-14 72.0
Msa0351370 AT3G56370.1 33.854 192 102 9 36 203 304 494 6.44e-14 71.6
Msa0351370 AT4G04220.1 35.556 180 108 7 45 216 131 310 7.10e-14 71.6
Msa0351370 AT5G51350.1 32.039 206 129 8 35 230 117 321 7.85e-14 71.6
Msa0351370 AT4G20140.1 31.461 178 116 6 45 216 120 297 1.10e-13 71.2
Msa0351370 AT5G63930.1 34.043 188 115 9 36 216 114 299 1.30e-13 70.9
Msa0351370 AT5G63930.1 35.882 170 104 5 52 216 442 611 6.02e-13 68.9
Msa0351370 AT5G63930.1 31.707 164 105 7 28 185 466 628 8.79e-11 62.4
Msa0351370 AT5G63930.2 34.043 188 115 9 36 216 50 235 1.39e-13 70.9
Msa0351370 AT5G63930.2 35.882 170 104 5 52 216 378 547 7.17e-13 68.6
Msa0351370 AT5G63930.2 31.707 164 105 7 28 185 402 564 9.99e-11 62.4
Msa0351370 AT1G27180.3 29.714 175 119 4 27 198 854 1027 1.53e-13 70.9
Msa0351370 AT1G27180.3 28.205 195 126 5 30 211 763 956 1.37e-11 64.7
Msa0351370 AT1G27180.1 29.714 175 119 4 27 198 1016 1189 1.84e-13 70.5
Msa0351370 AT1G27180.1 28.205 195 126 5 30 211 925 1118 1.64e-11 64.7
Msa0351370 AT4G29880.1 35.673 171 107 3 24 192 57 226 1.96e-13 69.7
Msa0351370 AT4G29880.1 40.367 109 63 2 95 201 81 189 4.86e-13 68.6
Msa0351370 AT1G27180.5 29.714 175 119 4 27 198 852 1025 1.97e-13 70.5
Msa0351370 AT1G27180.5 28.205 195 126 5 30 211 761 954 1.71e-11 64.7
Msa0351370 AT1G27180.8 29.714 175 119 4 27 198 852 1025 1.97e-13 70.5
Msa0351370 AT1G27180.8 28.205 195 126 5 30 211 761 954 1.71e-11 64.7
Msa0351370 AT1G27180.2 29.714 175 119 4 27 198 854 1027 1.97e-13 70.5
Msa0351370 AT1G27180.2 28.205 195 126 5 30 211 763 956 1.91e-11 64.3
Msa0351370 AT1G27180.7 29.714 175 119 4 27 198 678 851 2.04e-13 70.5
Msa0351370 AT1G27180.7 28.205 195 126 5 30 211 587 780 1.83e-11 64.7
Msa0351370 AT1G27180.6 29.714 175 119 4 27 198 678 851 2.04e-13 70.5
Msa0351370 AT1G27180.6 28.205 195 126 5 30 211 587 780 1.83e-11 64.7
Msa0351370 AT1G27180.4 29.714 175 119 4 27 198 678 851 2.04e-13 70.5
Msa0351370 AT1G27180.4 28.205 195 126 5 30 211 587 780 1.83e-11 64.7
Msa0351370 AT1G08590.1 32.524 206 107 8 45 219 222 426 2.82e-13 69.7
Msa0351370 AT1G73066.1 35.393 178 105 9 34 203 208 383 3.02e-13 69.7
Msa0351370 AT3G24240.1 35.119 168 101 7 34 194 120 286 3.04e-13 69.7
Msa0351370 AT4G08850.2 25.954 262 140 7 14 221 184 445 3.68e-13 69.7
Msa0351370 AT4G08850.2 32.961 179 102 8 28 189 140 317 4.21e-11 63.5
Msa0351370 AT4G08850.1 25.954 262 140 7 14 221 184 445 4.99e-13 69.3
Msa0351370 AT4G08850.1 32.961 179 102 8 28 189 140 317 6.02e-11 62.8
Msa0351370 AT5G06940.1 31.414 191 122 8 37 219 93 282 5.22e-13 68.9
Msa0351370 AT5G06940.1 30.180 222 97 10 34 198 138 358 1.82e-11 64.3
Msa0351370 AT2G19330.1 29.741 232 132 7 24 227 64 292 5.42e-13 68.6
Msa0351370 AT3G47090.1 32.447 188 119 8 36 216 354 540 8.66e-13 68.6
Msa0351370 AT5G20480.1 29.891 184 119 6 46 224 419 597 9.63e-13 68.2
Msa0351370 AT5G20480.1 29.412 187 126 6 36 216 361 547 4.06e-12 66.6
Msa0351370 AT5G20480.2 29.891 184 119 6 46 224 419 597 9.63e-13 68.2
Msa0351370 AT5G20480.2 29.412 187 126 6 36 216 361 547 4.06e-12 66.6
Msa0351370 AT4G26540.1 31.100 209 131 10 36 233 134 340 1.31e-12 67.8
Msa0351370 AT4G26540.1 30.769 182 120 5 59 234 109 290 6.41e-12 65.9
Msa0351370 AT3G25670.1 36.913 149 90 4 77 221 150 298 1.36e-12 67.4
Msa0351370 AT1G17230.1 31.841 201 128 9 27 219 458 657 1.39e-12 67.8
Msa0351370 AT5G25930.1 33.951 162 96 8 49 201 287 446 1.40e-12 67.8
Msa0351370 AT1G17230.3 31.527 203 130 9 25 219 456 657 1.65e-12 67.8
Msa0351370 AT1G17230.2 31.841 201 128 9 27 219 458 657 1.71e-12 67.4
Msa0351370 AT1G29730.3 32.258 186 113 9 44 218 122 305 2.18e-12 67.4
Msa0351370 AT5G48940.1 35.088 171 101 7 48 211 134 301 4.02e-12 66.6
Msa0351370 AT5G48940.1 34.555 191 116 9 36 219 412 600 7.84e-11 62.8
Msa0351370 AT5G56040.2 34.694 196 115 7 44 226 96 291 4.14e-12 66.2
Msa0351370 AT5G56040.1 34.694 196 115 7 44 226 96 291 4.86e-12 66.2
Msa0351370 AT5G62230.2 30.168 179 96 5 25 174 267 445 7.45e-12 65.5
Msa0351370 AT5G01890.1 28.641 206 124 9 39 221 380 585 1.36e-11 64.7
Msa0351370 AT1G09970.2 30.108 186 124 6 36 216 212 396 1.58e-11 64.7
Msa0351370 AT2G26330.1 32.195 205 124 10 25 219 97 296 1.67e-11 64.7
Msa0351370 AT1G09970.1 30.108 186 124 6 36 216 212 396 1.72e-11 64.7
Msa0351370 AT5G62230.1 34.416 154 94 7 27 174 341 493 1.83e-11 64.3
Msa0351370 AT1G68780.1 28.682 258 123 10 37 236 140 394 1.96e-11 63.9
Msa0351370 AT1G28440.1 33.158 190 119 8 36 219 222 409 2.04e-11 64.3
Msa0351370 AT1G73080.1 32.673 202 122 9 38 226 213 413 2.11e-11 64.3
Msa0351370 AT5G44700.1 29.289 239 138 12 28 255 633 851 2.49e-11 64.3
Msa0351370 AT1G29730.4 33.333 147 92 6 44 184 122 268 3.83e-11 63.5
Msa0351370 AT1G69550.1 34.171 199 111 12 30 212 1039 1233 4.28e-11 63.5
Msa0351370 AT1G35710.1 30.172 232 128 9 49 247 323 553 4.33e-11 63.5
Msa0351370 AT1G35710.1 32.258 155 99 6 44 192 150 304 8.98e-11 62.4
Msa0351370 AT2G41820.1 28.713 202 135 7 44 236 86 287 4.66e-11 63.2
Msa0351370 AT1G29730.1 33.333 147 92 6 44 184 122 268 4.80e-11 63.2
Msa0351370 AT3G11010.2 31.111 180 118 6 46 219 147 326 4.83e-11 63.2
Msa0351370 AT1G27170.1 28.358 201 131 7 56 248 706 901 4.95e-11 63.2
Msa0351370 AT3G11010.1 31.111 180 118 6 46 219 84 263 4.98e-11 63.2
Msa0351370 AT1G29730.2 33.333 147 92 6 44 184 122 268 5.01e-11 63.2
Msa0351370 AT1G27170.2 28.358 201 131 7 56 248 706 901 5.33e-11 63.2
Msa0351370 AT3G19320.1 30.539 167 111 5 35 197 240 405 6.75e-11 62.4
Msa0351370 AT1G31420.1 34.507 142 87 5 44 179 74 215 8.80e-11 62.4
Msa0351370 AT1G31420.3 34.507 142 87 5 44 179 74 215 8.80e-11 62.4
Msa0351370 AT1G31420.2 34.507 142 87 5 44 179 74 215 9.21e-11 62.0
Msa0351370 AT3G28040.1 31.818 198 121 9 48 233 201 396 9.86e-11 62.4

Find 102 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTATTGACTTATAATTTA+AGG 0.117027 3_1:+17934632 None:intergenic
CTTCTCTTTGGAAGAATTAC+AGG 0.201858 3_1:-17937803 Msa0351370:CDS
GTTAGTTGATACCTTCAATT+TGG 0.236448 3_1:+17940473 None:intergenic
CGCATTTGGACCCAACAAAA+TGG 0.256767 3_1:+17934285 None:intergenic
CACTTGTAGGATTGAGGTCT+GGG 0.285522 3_1:+17934425 None:intergenic
TGTTGGGAGTTGCTTCTCTT+TGG 0.313743 3_1:-17937815 Msa0351370:CDS
TGAAATTGATCCATTGATAT+AGG 0.320339 3_1:+17935111 None:intergenic
TGAAGGTGGTGGTGGTTTAT+TGG 0.325307 3_1:+17940614 None:intergenic
CAATCTTTCAATAGATTCAT+AGG 0.326451 3_1:+17935168 None:intergenic
TCATATATCACAAGCGGTTC+AGG 0.330760 3_1:+17934874 None:intergenic
CTTAAACTCGTGAACCTTGA+TGG 0.335070 3_1:-17938626 Msa0351370:CDS
CCACTTGTAGGATTGAGGTC+TGG 0.343843 3_1:+17934424 None:intergenic
CGATAGACTTCCAGTGAACT+TGG 0.355462 3_1:-17938663 Msa0351370:CDS
GAACACCGTGCACACTTTAT+AGG 0.355686 3_1:+17934238 None:intergenic
AATCATGTATATGAAATCTT+TGG 0.356586 3_1:+17934754 None:intergenic
TGAAATCTTTGGACTATTGT+TGG 0.357284 3_1:+17934765 None:intergenic
CTATAATCTAACATATTTGC+AGG 0.362571 3_1:+17934801 None:intergenic
GGTTCACGAGTTTAAGAGAT+TGG 0.365330 3_1:+17938633 None:intergenic
AAGCAACTCCCAACAGATTC+CGG 0.366189 3_1:+17937823 None:intergenic
AGGAGGAAAACATACATATA+TGG 0.372959 3_1:+17934384 None:intergenic
CTCAAACTGCCAATAGTTGC+CGG 0.374395 3_1:+17938422 None:intergenic
GAATTTGTTAACATCCTTGC+CGG 0.380059 3_1:-17938441 Msa0351370:CDS
ACTGGGGTTTCACCACTTGT+AGG 0.380270 3_1:+17934412 None:intergenic
CATAAGCAATCCATCGCATT+TGG 0.382945 3_1:+17934271 None:intergenic
ACATCCTTGCCGGCAACTAT+TGG 0.386833 3_1:-17938431 Msa0351370:CDS
CAAATATGTTAGATTATAGA+TGG 0.391184 3_1:-17934797 Msa0351370:three_prime_UTR
TTCTAGTGGGCCAGTTAGTA+AGG 0.396085 3_1:-17938487 Msa0351370:intron
TAGGATTACCATGCAGTGAT+AGG 0.397631 3_1:+17935130 None:intergenic
GTTGTAAATTAAGACTGTTT+TGG 0.398733 3_1:-17934685 Msa0351370:three_prime_UTR
AAGAAATTCGATTTCCATCA+AGG 0.405385 3_1:+17938612 None:intergenic
GCGTGAGATTCTAGTGGCTT+TGG 0.411238 3_1:+17940530 None:intergenic
AGGAGAGAATTACATTCATC+TGG 0.419154 3_1:+17938584 None:intergenic
AGCGTTCAAGCCTTACTAAC+TGG 0.424737 3_1:+17938477 None:intergenic
ATCAATGGATCAATTTCAAC+AGG 0.429193 3_1:-17935106 Msa0351370:intron
TCTAAATCGATGATTTCATC+TGG 0.432065 3_1:+17939267 None:intergenic
GACACCCTCATCGAGACCTT+TGG 0.441111 3_1:+17934922 None:intergenic
TTTGCGTGATTCCAAATTGA+AGG 0.441568 3_1:-17940484 Msa0351370:intron
AAGAGGAAAGCTGAGCCATT+GGG 0.442143 3_1:-17934561 Msa0351370:three_prime_UTR
TAACAAGTTACAGTCACTTC+CGG 0.450974 3_1:-17937842 Msa0351370:CDS
ATCAATTTGCTAATTTCCAC+AGG 0.451221 3_1:+17939023 None:intergenic
TTTCACCACTTGTAGGATTG+AGG 0.460498 3_1:+17934419 None:intergenic
ATTCTCTAGTACTTGTGAAA+AGG 0.467354 3_1:-17934531 Msa0351370:three_prime_UTR
TGGAGTTTCCCCAAGTTCAC+TGG 0.469928 3_1:+17938653 None:intergenic
CATACATATATGGATTTGAC+TGG 0.472841 3_1:+17934394 None:intergenic
GCATGGTAATCCTATATCAA+TGG 0.479080 3_1:-17935121 Msa0351370:CDS
CAAGAGGAAAGCTGAGCCAT+TGG 0.481136 3_1:-17934562 Msa0351370:three_prime_UTR
GACTTAACGCATAATCGAAT+AGG 0.481716 3_1:-17939225 Msa0351370:intron
AGTCACTTCCGGAATCTGTT+GGG 0.483565 3_1:-17937831 Msa0351370:CDS
CACATTATTTGCAGCAAACA+AGG 0.491426 3_1:+17934586 None:intergenic
ATCTCACGCTGGCGATCCAC+CGG 0.491881 3_1:-17940516 Msa0351370:CDS
GAAAAGGGTGTTATATGCAT+TGG 0.515702 3_1:-17934710 Msa0351370:three_prime_UTR
ATTGATTAATGTGCAGCGCC+TGG 0.519495 3_1:-17939006 Msa0351370:intron
AGACAACAATAATGTGAAGC+AGG 0.526925 3_1:-17936983 Msa0351370:intron
GATAGACTTCCAGTGAACTT+GGG 0.527043 3_1:-17938662 Msa0351370:CDS
CTTGAACGCTTATCCATCGC+GGG 0.537613 3_1:-17938464 Msa0351370:CDS
TGTCAATGATCCAGATGGAC+GGG 0.537840 3_1:-17935015 Msa0351370:intron
ACCAACATCGCAGATATTAG+CGG 0.543007 3_1:-17938696 Msa0351370:intron
CAGTCACTTCCGGAATCTGT+TGG 0.543142 3_1:-17937832 Msa0351370:CDS
GGTGGTATAGTAGAACAGAT+AGG 0.547551 3_1:-17940754 Msa0351370:five_prime_UTR
ATTGATTCAAACGTAATGAT+CGG 0.547957 3_1:-17934947 Msa0351370:CDS
TCGATTTAGACAGATCTGTT+CGG 0.549694 3_1:-17939254 Msa0351370:CDS
TTGACGAATGAAGGTGGTGG+TGG 0.551731 3_1:+17940606 None:intergenic
TTCAAGAATTTGAAGCAAGA+CGG 0.553299 3_1:-17934991 Msa0351370:CDS
ATCACGCAAAGCAACAATGC+CGG 0.561384 3_1:+17940497 None:intergenic
TTTGTTGGGTCCAAATGCGA+TGG 0.565879 3_1:-17934281 Msa0351370:three_prime_UTR
CTTGTACACAAATGCAGAGA+TGG 0.567864 3_1:+17934216 None:intergenic
ACTGCCAATAGTTGCCGGCA+AGG 0.568524 3_1:+17938427 None:intergenic
TTGGAAGAATTACAGGCCAA+TGG 0.576654 3_1:-17937796 Msa0351370:intron
AGTAGTACGTCATGAGTGGT+TGG 0.580785 3_1:-17940730 Msa0351370:five_prime_UTR
AGAATTACATTCATCTGGCA+AGG 0.582141 3_1:+17938589 None:intergenic
TGTTAACAAATTCCCCGCGA+TGG 0.582938 3_1:+17938451 None:intergenic
TAGCTATACAACCCATGTTG+CGG 0.583776 3_1:+17940568 None:intergenic
ATACATATATGGATTTGACT+GGG 0.587736 3_1:+17934395 None:intergenic
GCTGCAAATAATGTGTCAAG+AGG 0.591097 3_1:-17934578 Msa0351370:three_prime_UTR
TTGTCAATGATCCAGATGGA+CGG 0.591351 3_1:-17935016 Msa0351370:intron
AACGTAATGATCGGTTCCAA+AGG 0.592071 3_1:-17934938 Msa0351370:CDS
ATAGACTTCCAGTGAACTTG+GGG 0.597386 3_1:-17938661 Msa0351370:CDS
CTTCAAAACCTATCACTGCA+TGG 0.611064 3_1:-17935138 Msa0351370:CDS
TCAAAGAGAAAGAATAACAA+AGG 0.611754 3_1:+17940676 None:intergenic
AGAGGAAAGCTGAGCCATTG+GGG 0.611995 3_1:-17934560 Msa0351370:three_prime_UTR
TGAAAATCATATATCACAAG+CGG 0.615561 3_1:+17934868 None:intergenic
TACATATATGGATTTGACTG+GGG 0.620033 3_1:+17934396 None:intergenic
GACTGCAGTTGACATTCCTG+TGG 0.622438 3_1:-17939039 Msa0351370:intron
CCAGACCTCAATCCTACAAG+TGG 0.626312 3_1:-17934424 Msa0351370:three_prime_UTR
GGTTCCAAAGGTCTCGATGA+GGG 0.626733 3_1:-17934926 Msa0351370:CDS
ACGCAAAGCAACAATGCCGG+TGG 0.644555 3_1:+17940500 None:intergenic
AGGAAGTAGTACGTCATGAG+TGG 0.649659 3_1:-17940734 Msa0351370:five_prime_UTR
TCGCCAGCGTGAGATTCTAG+TGG 0.650826 3_1:+17940524 None:intergenic
TTGCAATTGACGAATGAAGG+TGG 0.653200 3_1:+17940600 None:intergenic
ACTTGTAGGATTGAGGTCTG+GGG 0.655834 3_1:+17934426 None:intergenic
CGGTTCCAAAGGTCTCGATG+AGG 0.660913 3_1:-17934927 Msa0351370:CDS
CACGACCTATAAAGTGTGCA+CGG 0.661695 3_1:-17934243 Msa0351370:three_prime_UTR
AGCAAACAAGGTAACAACAA+AGG 0.676664 3_1:+17934598 None:intergenic
GAGAGATTGCAAACTGACGA+AGG 0.679110 3_1:+17937027 None:intergenic
CAATTGACGAATGAAGGTGG+TGG 0.695770 3_1:+17940603 None:intergenic
GCTTGAACGCTTATCCATCG+CGG 0.700655 3_1:-17938465 Msa0351370:CDS
GAGGAAAGCTGAGCCATTGG+GGG 0.706813 3_1:-17934559 Msa0351370:three_prime_UTR
TCACTGGAAGTCTATCGATG+AGG 0.707550 3_1:+17938669 None:intergenic
TTGAACGCTTATCCATCGCG+GGG 0.710749 3_1:-17938463 Msa0351370:CDS
ACATATATCAAACATCGAGG+TGG 0.715250 3_1:-17940772 None:intergenic
AAGCCACTAGAATCTCACGC+TGG 0.734758 3_1:-17940527 Msa0351370:CDS
ACTACATATATCAAACATCG+AGG 0.742723 3_1:-17940775 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTGTTTTTAAATAAAAAAA+AGG - chr3_1:17934706-17934725 Msa0351370:three_prime_UTR 10.0%
!! AATGAATAAATGAAATTTAA+TGG + chr3_1:17936059-17936078 None:intergenic 10.0%
!! ATAATATATTATTGTCTTAA+AGG + chr3_1:17936377-17936396 None:intergenic 10.0%
!!! TATTATTGACTTATAATTTA+AGG + chr3_1:17940309-17940328 None:intergenic 10.0%
!!! TAAAATCACTTTTAAATTTG+TGG + chr3_1:17935040-17935059 None:intergenic 15.0%
!!! AATAACTATGTTACTTTATT+TGG - chr3_1:17935256-17935275 Msa0351370:intron 15.0%
!! AATAAATAAAAAACAACTGA+TGG + chr3_1:17935365-17935384 None:intergenic 15.0%
!!! TCATACTTTAAAAGTTATAA+AGG + chr3_1:17937033-17937052 None:intergenic 15.0%
!! GAATAGAAATAAATATAACA+AGG + chr3_1:17937362-17937381 None:intergenic 15.0%
!!! TATATTTATTTCTATTCCAA+TGG - chr3_1:17937365-17937384 Msa0351370:intron 15.0%
!!! AATTGATTCTGTTTTATTAT+AGG - chr3_1:17938339-17938358 Msa0351370:intron 15.0%
!!! ATTGATTCTGTTTTATTATA+GGG - chr3_1:17938340-17938359 Msa0351370:intron 15.0%
!!! ATTTTTTCAAGAATGTAATA+AGG + chr3_1:17938498-17938517 None:intergenic 15.0%
!! GAAAAAATAATTAAAATACG+TGG - chr3_1:17938510-17938529 Msa0351370:intron 15.0%
!!! GTAAATATTGATTTAGAAAT+TGG + chr3_1:17939427-17939446 None:intergenic 15.0%
!! ACAAATAATTAAACTAAGAT+GGG + chr3_1:17939552-17939571 None:intergenic 15.0%
!! ATAATAAATTTCAATATAGG+AGG + chr3_1:17940574-17940593 None:intergenic 15.0%
!! CTCATAATAAATTTCAATAT+AGG + chr3_1:17940577-17940596 None:intergenic 15.0%
!! CTATATTGAAATTTATTATG+AGG - chr3_1:17940575-17940594 Msa0351370:exon 15.0%
!! TCACAAAAAAGAAAATGAAA+AGG + chr3_1:17934501-17934520 None:intergenic 20.0%
!!! CGATTCTAATTATTTGATTT+TGG - chr3_1:17934525-17934544 Msa0351370:three_prime_UTR 20.0%
!!! GATTGATAAGTTTTACTATA+TGG - chr3_1:17934620-17934639 Msa0351370:three_prime_UTR 20.0%
!!! AAAAGGTTAATTGTATGTTT+TGG - chr3_1:17934723-17934742 Msa0351370:three_prime_UTR 20.0%
!!! TAATTGTATGTTTTGGTTTT+TGG - chr3_1:17934730-17934749 Msa0351370:three_prime_UTR 20.0%
!! AATGTAAAGTGATTTATGTT+TGG - chr3_1:17934785-17934804 Msa0351370:three_prime_UTR 20.0%
!! GGTTAGTAAATTTCATTATA+TGG + chr3_1:17935019-17935038 None:intergenic 20.0%
!! AGTTATTTGAACATCAATTT+AGG + chr3_1:17935243-17935262 None:intergenic 20.0%
!!! TAACGAACTAACTATTTTTT+GGG + chr3_1:17935453-17935472 None:intergenic 20.0%
!!! TTAACGAACTAACTATTTTT+TGG + chr3_1:17935454-17935473 None:intergenic 20.0%
!!! AGTTCGTTAATTAGTTTTTA+TGG - chr3_1:17935464-17935483 Msa0351370:intron 20.0%
!!! ACTACATTTTATCTTATGTT+TGG - chr3_1:17936003-17936022 Msa0351370:intron 20.0%
!!! ATAAAAGTTTGATGATATCT+AGG + chr3_1:17936570-17936589 None:intergenic 20.0%
!! TTTATATTGCTTATGCAATT+TGG - chr3_1:17936585-17936604 Msa0351370:intron 20.0%
!! AATAATCTTGAGTGTTAAAA+GGG + chr3_1:17936876-17936895 None:intergenic 20.0%
!! AAATAATCTTGAGTGTTAAA+AGG + chr3_1:17936877-17936896 None:intergenic 20.0%
!! TTATCGTTAAATATAAACGA+TGG - chr3_1:17936914-17936933 Msa0351370:intron 20.0%
!!! ACTTTAAAAGTTATAAAGGT+GGG + chr3_1:17937029-17937048 None:intergenic 20.0%
!!! TACTTTAAAAGTTATAAAGG+TGG + chr3_1:17937030-17937049 None:intergenic 20.0%
!! TGTAAAAATTGGAAATAGTT+TGG - chr3_1:17937254-17937273 Msa0351370:intron 20.0%
!!! TGCTGTTTATTTAATTTTAC+TGG - chr3_1:17937301-17937320 Msa0351370:intron 20.0%
!! AAAGCATAAAACTATACAAA+TGG + chr3_1:17937626-17937645 None:intergenic 20.0%
!! TTGAAGCCAAATAATAATAA+AGG + chr3_1:17937825-17937844 None:intergenic 20.0%
!! CTTATATTATCTCATAGATA+TGG + chr3_1:17938539-17938558 None:intergenic 20.0%
!! ACATATTTCAGTTTATCTAT+TGG - chr3_1:17938768-17938787 Msa0351370:intron 20.0%
!! AAATTCTTCAAAAGCAAAAA+TGG + chr3_1:17939107-17939126 None:intergenic 20.0%
!! AAATTACTTGAATTAATGCT+TGG - chr3_1:17939162-17939181 Msa0351370:intron 20.0%
!! GACAAATAATTAAACTAAGA+TGG + chr3_1:17939553-17939572 None:intergenic 20.0%
!! CAAATATGTTAGATTATAGA+TGG - chr3_1:17940141-17940160 Msa0351370:intron 20.0%
!! AATCATGTATATGAAATCTT+TGG + chr3_1:17940187-17940206 None:intergenic 20.0%
!!! TATTTTGTCAACAATGAAAA+GGG - chr3_1:17940213-17940232 Msa0351370:intron 20.0%
! TCAAAGAGAAAGAATAACAA+AGG + chr3_1:17934265-17934284 None:intergenic 25.0%
!! ATTTTGAATGTGAATGTGAA+AGG + chr3_1:17934299-17934318 None:intergenic 25.0%
!!! ATTCACGTTTTTGATTGATT+TGG - chr3_1:17934548-17934567 Msa0351370:three_prime_UTR 25.0%
!!! TTTTTGATTGATTTGGTTCA+TGG - chr3_1:17934555-17934574 Msa0351370:three_prime_UTR 25.0%
! AGTTCAACTCAAATGATAAA+AGG - chr3_1:17934659-17934678 Msa0351370:three_prime_UTR 25.0%
! ACATTATTAACCATGATTTC+AGG + chr3_1:17935103-17935122 None:intergenic 25.0%
!!! AACGAACTAACTATTTTTTG+GGG + chr3_1:17935452-17935471 None:intergenic 25.0%
!! TTTTATGGAAGAACATATGT+TGG - chr3_1:17935479-17935498 Msa0351370:intron 25.0%
! TTTATGGAAGAACATATGTT+GGG - chr3_1:17935480-17935499 Msa0351370:intron 25.0%
!! GATAATGATAACCTTTTAAG+AGG + chr3_1:17935836-17935855 None:intergenic 25.0%
! TTTAAGAAATAAATGCTGGA+AGG + chr3_1:17935982-17936001 None:intergenic 25.0%
! AGTGTTTAAGAAATAAATGC+TGG + chr3_1:17935986-17936005 None:intergenic 25.0%
!!! ATCTTTCATTTGTTTTTCCA+TGG - chr3_1:17936128-17936147 Msa0351370:intron 25.0%
! GTAAGTTAGTACATAAAAGA+GGG + chr3_1:17936419-17936438 None:intergenic 25.0%
! TGTAAGTTAGTACATAAAAG+AGG + chr3_1:17936420-17936439 None:intergenic 25.0%
! ATCATAATTTCAGCTAACAA+TGG + chr3_1:17936998-17937017 None:intergenic 25.0%
! CATTAAACAAAAACTTCCAT+TGG + chr3_1:17937384-17937403 None:intergenic 25.0%
!!! CAATGGAAGTTTTTGTTTAA+TGG - chr3_1:17937382-17937401 Msa0351370:intron 25.0%
!!! CTTTAAGACAAATTTAAACC+TGG - chr3_1:17937447-17937466 Msa0351370:intron 25.0%
! ATAAAACTATACAAATGGCA+TGG + chr3_1:17937621-17937640 None:intergenic 25.0%
!!! TTTTATGCTTTCTAGTTACT+TGG - chr3_1:17937635-17937654 Msa0351370:intron 25.0%
!! TTAAGCAAACCACAATATTT+TGG - chr3_1:17937703-17937722 Msa0351370:intron 25.0%
!! TAAGCAAACCACAATATTTT+GGG - chr3_1:17937704-17937723 Msa0351370:intron 25.0%
! ATTTCTATGATTGTCAAATC+TGG - chr3_1:17937777-17937796 Msa0351370:intron 25.0%
! AAGCCAAATAATAATAAAGG+TGG + chr3_1:17937822-17937841 None:intergenic 25.0%
! GTCCAATAGCAAAAAAAAAA+GGG + chr3_1:17938185-17938204 None:intergenic 25.0%
! AGTCCAATAGCAAAAAAAAA+AGG + chr3_1:17938186-17938205 None:intergenic 25.0%
!!! CATATATGTTTTTTCCTTTG+AGG + chr3_1:17938624-17938643 None:intergenic 25.0%
! CTCAAAGGAAAAAACATATA+TGG - chr3_1:17938622-17938641 Msa0351370:CDS 25.0%
! ATGGAATTCACAAATTATGA+CGG - chr3_1:17938641-17938660 Msa0351370:CDS 25.0%
!! TAAATTGCATTTGGGATAAT+CGG - chr3_1:17938708-17938727 Msa0351370:intron 25.0%
! TGAAATATGTAAATCCAAAC+AGG + chr3_1:17938758-17938777 None:intergenic 25.0%
!!! TGTTTTTATAAGCTATCCTA+GGG + chr3_1:17938825-17938844 None:intergenic 25.0%
! TTTGTCCGTTAAGTTTAAAT+TGG - chr3_1:17939489-17939508 Msa0351370:intron 25.0%
! ATTACATAAACTCGTAGAAT+CGG + chr3_1:17939707-17939726 None:intergenic 25.0%
! CAATCTTTCAATAGATTCAT+AGG + chr3_1:17939773-17939792 None:intergenic 25.0%
! TGAAATTGATCCATTGATAT+AGG + chr3_1:17939830-17939849 None:intergenic 25.0%
!! ATTGATTCAAACGTAATGAT+CGG - chr3_1:17939991-17940010 Msa0351370:intron 25.0%
! TGAAAATCATATATCACAAG+CGG + chr3_1:17940073-17940092 None:intergenic 25.0%
!! TTGTGATATATGATTTTCAG+TGG - chr3_1:17940074-17940093 Msa0351370:intron 25.0%
! CTATAATCTAACATATTTGC+AGG + chr3_1:17940140-17940159 None:intergenic 25.0%
!! CTATTTTGTCAACAATGAAA+AGG - chr3_1:17940212-17940231 Msa0351370:intron 25.0%
!! GTTGTAAATTAAGACTGTTT+TGG - chr3_1:17940253-17940272 Msa0351370:intron 25.0%
! ATACATATATGGATTTGACT+GGG + chr3_1:17940546-17940565 None:intergenic 25.0%
! ACATAAAATTCCTTTCATGT+AGG - chr3_1:17940625-17940644 Msa0351370:five_prime_UTR 25.0%
! GTTAGTTGATACCTTCAATT+TGG + chr3_1:17934468-17934487 None:intergenic 30.0%
!! ATTGATTTGGTTCATGGATA+AGG - chr3_1:17934561-17934580 Msa0351370:three_prime_UTR 30.0%
!! GTTTTTGGATGAATTGATTC+TGG - chr3_1:17934745-17934764 Msa0351370:three_prime_UTR 30.0%
! TGATTCTGGAGAATTGTTTA+TGG - chr3_1:17934759-17934778 Msa0351370:three_prime_UTR 30.0%
AGAATCAAAAGCTCAAATTC+TGG - chr3_1:17934863-17934882 Msa0351370:three_prime_UTR 30.0%
! AGAATTGATTCTGACATGTT+TGG + chr3_1:17934918-17934937 None:intergenic 30.0%
! TACACCCTTAGAATCAATTT+TGG - chr3_1:17934937-17934956 Msa0351370:CDS 30.0%
!! CAAAATGACAGTTTTGTGAA+GGG - chr3_1:17935386-17935405 Msa0351370:intron 30.0%
TTATGGAAGAACATATGTTG+GGG - chr3_1:17935481-17935500 Msa0351370:intron 30.0%
AAGGAAAATGAAAGATAGCA+AGG + chr3_1:17935636-17935655 None:intergenic 30.0%
TCTAAATCGATGATTTCATC+TGG + chr3_1:17935674-17935693 None:intergenic 30.0%
! TTCCTTTTGTACATACGTTT+TGG - chr3_1:17935750-17935769 Msa0351370:intron 30.0%
AACCAAAACGTATGTACAAA+AGG + chr3_1:17935755-17935774 None:intergenic 30.0%
TTACAACTACTTCAGAGTAA+AGG + chr3_1:17935784-17935803 None:intergenic 30.0%
!! ATCAATTTGCTAATTTCCAC+AGG + chr3_1:17935918-17935937 None:intergenic 30.0%
TAAAATCTCATGTTCTTACC+AGG + chr3_1:17935953-17935972 None:intergenic 30.0%
!!! ATTCTGAAACCCATACTTTT+TGG - chr3_1:17936076-17936095 Msa0351370:intron 30.0%
!! AAGAAGTGTCCAAAAAGTAT+GGG + chr3_1:17936088-17936107 None:intergenic 30.0%
!! TAAGAAGTGTCCAAAAAGTA+TGG + chr3_1:17936089-17936108 None:intergenic 30.0%
!! TACTTTTTGGACACTTCTTA+TGG - chr3_1:17936089-17936108 Msa0351370:intron 30.0%
CAGTACAGCACTAATAAAAA+TGG + chr3_1:17936179-17936198 None:intergenic 30.0%
AAGAAATTCGATTTCCATCA+AGG + chr3_1:17936329-17936348 None:intergenic 30.0%
!!! ACAGTGTATTTTGTTTCTAG+TGG - chr3_1:17936437-17936456 Msa0351370:intron 30.0%
!!! CAGTGTATTTTGTTTCTAGT+GGG - chr3_1:17936438-17936457 Msa0351370:intron 30.0%
ACTATCAATCAACATACCAT+TGG + chr3_1:17937161-17937180 None:intergenic 30.0%
AAGACAAATTTAAACCTGGT+TGG - chr3_1:17937451-17937470 Msa0351370:intron 30.0%
TTTACTGATGAGTCTCAATT+TGG - chr3_1:17937673-17937692 Msa0351370:intron 30.0%
! AAGCAAACCACAATATTTTG+GGG - chr3_1:17937705-17937724 Msa0351370:intron 30.0%
!! TCACAAGAGAAATGGTTTTA+TGG + chr3_1:17937751-17937770 None:intergenic 30.0%
AAAACCATTTCTCTTGTGAT+TGG - chr3_1:17937752-17937771 Msa0351370:intron 30.0%
!!! CACCCTTTTTTTTTTGCTAT+TGG - chr3_1:17938180-17938199 Msa0351370:intron 30.0%
!!! TTTTTTTGCTATTGGACTAG+TGG - chr3_1:17938188-17938207 Msa0351370:intron 30.0%
!!! GTGTGTTTATTTTAGCATGT+TGG + chr3_1:17938214-17938233 None:intergenic 30.0%
TGCTAAAATAAACACACGTA+CGG - chr3_1:17938217-17938236 Msa0351370:intron 30.0%
!! TTCATTAAAGAGTACTGTTG+TGG - chr3_1:17938567-17938586 Msa0351370:intron 30.0%
TGGAATTCACAAATTATGAC+GGG - chr3_1:17938642-17938661 Msa0351370:CDS 30.0%
AGCCAAGTTAAATTGCATTT+GGG - chr3_1:17938700-17938719 Msa0351370:intron 30.0%
ATCCCAAATGCAATTTAACT+TGG + chr3_1:17938705-17938724 None:intergenic 30.0%
! AAATTGCATTTGGGATAATC+GGG - chr3_1:17938709-17938728 Msa0351370:intron 30.0%
!!! CTGTTTTTATAAGCTATCCT+AGG + chr3_1:17938826-17938845 None:intergenic 30.0%
AGATGAATTCAGACAGTTAA+AGG + chr3_1:17939000-17939019 None:intergenic 30.0%
TTTAACTGTCTGAATTCATC+TGG - chr3_1:17938999-17939018 Msa0351370:intron 30.0%
ACTCAATATGTTCTGATCAA+AGG - chr3_1:17939129-17939148 Msa0351370:intron 30.0%
! ACTAGCTGCATTTTACATTT+AGG - chr3_1:17939221-17939240 Msa0351370:intron 30.0%
! GTTAGGTTTTTCCATACAAA+GGG - chr3_1:17939279-17939298 Msa0351370:intron 30.0%
! TTAGGTTTTTCCATACAAAG+GGG - chr3_1:17939280-17939299 Msa0351370:intron 30.0%
GATAATGTAGCTTGAATATG+AGG - chr3_1:17939323-17939342 Msa0351370:intron 30.0%
ATTCTTTCAACATGCATGAA+TGG - chr3_1:17939359-17939378 Msa0351370:intron 30.0%
CTATGCACATAGTGTAAATT+AGG - chr3_1:17939625-17939644 Msa0351370:intron 30.0%
ACATAGTGTAAATTAGGTGT+AGG - chr3_1:17939631-17939650 Msa0351370:intron 30.0%
ATCAATGGATCAATTTCAAC+AGG - chr3_1:17939832-17939851 Msa0351370:intron 30.0%
GAAAAAGAAGAGTAGAAATC+CGG + chr3_1:17939871-17939890 None:intergenic 30.0%
! TTCAAGAATTTGAAGCAAGA+CGG - chr3_1:17939947-17939966 Msa0351370:intron 30.0%
!! TGGTACATTTTGATGAACTT+TGG - chr3_1:17940094-17940113 Msa0351370:intron 30.0%
TGAAATCTTTGGACTATTGT+TGG + chr3_1:17940176-17940195 None:intergenic 30.0%
!!! AAGACTGTTTTGGTGTAATA+TGG - chr3_1:17940263-17940282 Msa0351370:intron 30.0%
!!! AGACTGTTTTGGTGTAATAT+GGG - chr3_1:17940264-17940283 Msa0351370:intron 30.0%
ATTCTCTAGTACTTGTGAAA+AGG - chr3_1:17940407-17940426 Msa0351370:intron 30.0%
TACATATATGGATTTGACTG+GGG + chr3_1:17940545-17940564 None:intergenic 30.0%
CATACATATATGGATTTGAC+TGG + chr3_1:17940547-17940566 None:intergenic 30.0%
AGGAGGAAAACATACATATA+TGG + chr3_1:17940557-17940576 None:intergenic 30.0%
GAAACCCAAAAAAGAAAACG+CGG - chr3_1:17934230-17934249 Msa0351370:three_prime_UTR 35.0%
! GAAACCGCGTTTTCTTTTTT+GGG + chr3_1:17934237-17934256 None:intergenic 35.0%
! TGAAACCGCGTTTTCTTTTT+TGG + chr3_1:17934238-17934257 None:intergenic 35.0%
! GTTTTGCAATTGACGAATGA+AGG + chr3_1:17934344-17934363 None:intergenic 35.0%
AAAACCAAAAACCGCAACAT+GGG - chr3_1:17934359-17934378 Msa0351370:intron 35.0%
TTTGCGTGATTCCAAATTGA+AGG - chr3_1:17934454-17934473 Msa0351370:three_prime_UTR 35.0%
! ACCCTTAGAATCAATTTTGG+TGG - chr3_1:17934940-17934959 Msa0351370:CDS 35.0%
! GCCACCAAAATTGATTCTAA+GGG + chr3_1:17934944-17934963 None:intergenic 35.0%
CAAACCTAACACTTCTAGAT+GGG + chr3_1:17934966-17934985 None:intergenic 35.0%
CTTTCTAATCTGCGTGTATT+CGG - chr3_1:17935073-17935092 Msa0351370:intron 35.0%
ATTCGGAATACCTGAAATCA+TGG - chr3_1:17935090-17935109 Msa0351370:intron 35.0%
!! CCTTCACAAAACTGTCATTT+TGG + chr3_1:17935388-17935407 None:intergenic 35.0%
!! CCAAAATGACAGTTTTGTGA+AGG - chr3_1:17935385-17935404 Msa0351370:intron 35.0%
TATGGAAGAACATATGTTGG+GGG - chr3_1:17935482-17935501 Msa0351370:intron 35.0%
GGGAATGTTAGTTCGTTAAA+TGG - chr3_1:17935502-17935521 Msa0351370:intron 35.0%
TCTTTCATCTTTGTACCTTG+AGG - chr3_1:17935526-17935545 Msa0351370:intron 35.0%
CTTCAAGCACGTATAAATAC+AGG + chr3_1:17935578-17935597 None:intergenic 35.0%
!! CTGGAAAAGTCTGTTTTTCA+AGG + chr3_1:17935655-17935674 None:intergenic 35.0%
TCGATTTAGACAGATCTGTT+CGG - chr3_1:17935684-17935703 Msa0351370:intron 35.0%
GACTTAACGCATAATCGAAT+AGG - chr3_1:17935713-17935732 Msa0351370:intron 35.0%
!! GAAGTGCTTTTCCTCTTAAA+AGG - chr3_1:17935822-17935841 Msa0351370:intron 35.0%
GTTTAGCTACTCTTTGATTC+TGG - chr3_1:17936028-17936047 Msa0351370:intron 35.0%
! GTTTTTCCATGGTAGAATGT+TGG - chr3_1:17936139-17936158 Msa0351370:intron 35.0%
AGAATTACATTCATCTGGCA+AGG + chr3_1:17936352-17936371 None:intergenic 35.0%
AGGAGAGAATTACATTCATC+TGG + chr3_1:17936357-17936376 None:intergenic 35.0%
!! GAATTTGTTAACATCCTTGC+CGG - chr3_1:17936497-17936516 Msa0351370:intron 35.0%
!! GCTTCATTTCTGAAATGTCT+TGG + chr3_1:17936698-17936717 None:intergenic 35.0%
GTGTCTTCAAATGTATGACA+TGG + chr3_1:17936726-17936745 None:intergenic 35.0%
CGGATATTATCTAACAAGCA+TGG + chr3_1:17936806-17936825 None:intergenic 35.0%
GTAAGCATGTCAACAGAAAA+CGG + chr3_1:17936826-17936845 None:intergenic 35.0%
CATGCTTACTTTCTAATCGA+AGG - chr3_1:17936837-17936856 Msa0351370:intron 35.0%
TGACATATTGACCTATGACT+TGG - chr3_1:17936944-17936963 Msa0351370:intron 35.0%
TAACAAGTTACAGTCACTTC+CGG - chr3_1:17937096-17937115 Msa0351370:intron 35.0%
! CTTCTCTTTGGAAGAATTAC+AGG - chr3_1:17937135-17937154 Msa0351370:intron 35.0%
ATTTCTGAATTGCATGAGCA+TGG - chr3_1:17937197-17937216 Msa0351370:intron 35.0%
! TGTTGATTGTCAGTTCAATG+CGG - chr3_1:17937328-17937347 Msa0351370:intron 35.0%
GTCTTAAAACCAACATTGCA+AGG + chr3_1:17937547-17937566 None:intergenic 35.0%
TTCTTCACCCCAAAATATTG+TGG + chr3_1:17937715-17937734 None:intergenic 35.0%
ATAGCCAATCACAAGAGAAA+TGG + chr3_1:17937759-17937778 None:intergenic 35.0%
GCGCCACCTTTATTATTATT+TGG - chr3_1:17937816-17937835 Msa0351370:CDS 35.0%
AGACAACAATAATGTGAAGC+AGG - chr3_1:17937955-17937974 Msa0351370:intron 35.0%
ATACCTTAGTGATGTAATGC+TGG - chr3_1:17937990-17938009 Msa0351370:intron 35.0%
AGTTGGATGTTCCTCATAAA+AGG + chr3_1:17938135-17938154 None:intergenic 35.0%
GCTAAAATAAACACACGTAC+GGG - chr3_1:17938218-17938237 Msa0351370:intron 35.0%
CTAAAATAAACACACGTACG+GGG - chr3_1:17938219-17938238 Msa0351370:intron 35.0%
GTCTTTAAGTATAGAGAGAG+AGG - chr3_1:17938367-17938386 Msa0351370:intron 35.0%
AAGTATAGAGAGAGAGGAAA+AGG - chr3_1:17938373-17938392 Msa0351370:intron 35.0%
!!! TTTTTTCCTTTGAGGAAGAC+AGG + chr3_1:17938616-17938635 None:intergenic 35.0%
GAGCCAAGTTAAATTGCATT+TGG - chr3_1:17938699-17938718 Msa0351370:intron 35.0%
GTTAATTCCATAAACTCCCT+AGG - chr3_1:17938806-17938825 Msa0351370:intron 35.0%
TGGCAAGTTACACAATATTC+CGG - chr3_1:17938927-17938946 Msa0351370:intron 35.0%
TTCAGACAGTTAAAGGCAAT+GGG + chr3_1:17938993-17939012 None:intergenic 35.0%
ATTCAGACAGTTAAAGGCAA+TGG + chr3_1:17938994-17939013 None:intergenic 35.0%
CCTAACGCAAAGAAAAAAAC+AGG + chr3_1:17939265-17939284 None:intergenic 35.0%
!!! CCTGTTTTTTTCTTTGCGTT+AGG - chr3_1:17939262-17939281 Msa0351370:CDS 35.0%
! CGTTAGGTTTTTCCATACAA+AGG - chr3_1:17939278-17939297 Msa0351370:intron 35.0%
TCAACTCTTCCAAATGATAG+TGG + chr3_1:17939392-17939411 None:intergenic 35.0%
GCACGCCAATTTAAACTTAA+CGG + chr3_1:17939497-17939516 None:intergenic 35.0%
ATTTGTGTTCTTGTCTAGTC+TGG - chr3_1:17939523-17939542 Msa0351370:intron 35.0%
TTTGTGTTCTTGTCTAGTCT+GGG - chr3_1:17939524-17939543 Msa0351370:intron 35.0%
AAATTCTGTAGCGAACTCTT+AGG - chr3_1:17939670-17939689 Msa0351370:intron 35.0%
! AAGGTATCACTAAGACATTC+AGG + chr3_1:17939730-17939749 None:intergenic 35.0%
TGAATGTCTTAGTGATACCT+TGG - chr3_1:17939729-17939748 Msa0351370:intron 35.0%
! TGATACCTTGGTTTCCTTTT+GGG - chr3_1:17939741-17939760 Msa0351370:intron 35.0%
GCATGGTAATCCTATATCAA+TGG - chr3_1:17939817-17939836 Msa0351370:intron 35.0%
!! GAAAAGGGTGTTATATGCAT+TGG - chr3_1:17940228-17940247 Msa0351370:intron 35.0%
AGCAAACAAGGTAACAACAA+AGG + chr3_1:17940343-17940362 None:intergenic 35.0%
CACATTATTTGCAGCAAACA+AGG + chr3_1:17940355-17940374 None:intergenic 35.0%
AATGGTTTCACCTACATGAA+AGG + chr3_1:17940638-17940657 None:intergenic 35.0%
! TGTAGGTGAAACCATTTTGT+TGG - chr3_1:17940642-17940661 Msa0351370:five_prime_UTR 35.0%
! GTAGGTGAAACCATTTTGTT+GGG - chr3_1:17940643-17940662 Msa0351370:five_prime_UTR 35.0%
GGTGGTATAGTAGAACAGAT+AGG - chr3_1:17934184-17934203 Msa0351370:three_prime_UTR 40.0%
TTGCAATTGACGAATGAAGG+TGG + chr3_1:17934341-17934360 None:intergenic 40.0%
CAAAACCAAAAACCGCAACA+TGG - chr3_1:17934358-17934377 Msa0351370:intron 40.0%
TAGCTATACAACCCATGTTG+CGG + chr3_1:17934373-17934392 None:intergenic 40.0%
! GGCCACCAAAATTGATTCTA+AGG + chr3_1:17934945-17934964 None:intergenic 40.0%
CCAAACCTAACACTTCTAGA+TGG + chr3_1:17934967-17934986 None:intergenic 40.0%
!! CCATCTAGAAGTGTTAGGTT+TGG - chr3_1:17934964-17934983 Msa0351370:CDS 40.0%
!!! TTTTTGGGGTGAATCTAGTG+TGG + chr3_1:17935438-17935457 None:intergenic 40.0%
CTTGAGGAAATCCAAACTCT+CGG - chr3_1:17935542-17935561 Msa0351370:intron 40.0%
!! AGGAAAAGCACTTCTCTTTG+AGG + chr3_1:17935816-17935835 None:intergenic 40.0%
CCATTACCAACATTCTACCA+TGG + chr3_1:17936148-17936167 None:intergenic 40.0%
! CCATGGTAGAATGTTGGTAA+TGG - chr3_1:17936145-17936164 Msa0351370:intron 40.0%
ACCAACATCGCAGATATTAG+CGG - chr3_1:17936242-17936261 Msa0351370:intron 40.0%
GATAGACTTCCAGTGAACTT+GGG - chr3_1:17936276-17936295 Msa0351370:intron 40.0%
ATAGACTTCCAGTGAACTTG+GGG - chr3_1:17936277-17936296 Msa0351370:intron 40.0%
GGTTCACGAGTTTAAGAGAT+TGG + chr3_1:17936308-17936327 None:intergenic 40.0%
CTTAAACTCGTGAACCTTGA+TGG - chr3_1:17936312-17936331 Msa0351370:intron 40.0%
CTCATGCAAATCCAAGTCAT+AGG + chr3_1:17936958-17936977 None:intergenic 40.0%
! CTATGACTTGGATTTGCATG+AGG - chr3_1:17936956-17936975 Msa0351370:intron 40.0%
TTGGAAGAATTACAGGCCAA+TGG - chr3_1:17937142-17937161 Msa0351370:intron 40.0%
! TTTACAGCGAAAGAGCGTAA+GGG + chr3_1:17937240-17937259 None:intergenic 40.0%
!! TTTTACAGCGAAAGAGCGTA+AGG + chr3_1:17937241-17937260 None:intergenic 40.0%
CGCTCTTTCGCTGTAAAAAT+TGG - chr3_1:17937243-17937262 Msa0351370:intron 40.0%
AATTTCTTCTGCAAGGTCTC+GGG + chr3_1:17937519-17937538 None:intergenic 40.0%
GAATTTCTTCTGCAAGGTCT+CGG + chr3_1:17937520-17937539 None:intergenic 40.0%
AATTCGAGACCTTGCAATGT+TGG - chr3_1:17937535-17937554 Msa0351370:intron 40.0%
AGTCCAGCATTACATCACTA+AGG + chr3_1:17937996-17938015 None:intergenic 40.0%
AAGAGGTCAACAAAGCATGA+TGG + chr3_1:17938093-17938112 None:intergenic 40.0%
! TGCTTTGTTGACCTCTTATG+AGG - chr3_1:17938096-17938115 Msa0351370:intron 40.0%
! AACAAAGCGTTCCTCATAAG+AGG + chr3_1:17938110-17938129 None:intergenic 40.0%
!! CGCTTTGTTGACCTTTTATG+AGG - chr3_1:17938121-17938140 Msa0351370:intron 40.0%
! GACATTTTATGTGGAATCCC+GGG + chr3_1:17938272-17938291 None:intergenic 40.0%
! CGACATTTTATGTGGAATCC+CGG + chr3_1:17938273-17938292 None:intergenic 40.0%
!! AGCTCTGACGACATTTTATG+TGG + chr3_1:17938281-17938300 None:intergenic 40.0%
AAACCACTAGGCTGTAACAA+CGG - chr3_1:17938301-17938320 Msa0351370:intron 40.0%
ATTCTACCTGTCTTCCTCAA+AGG - chr3_1:17938607-17938626 Msa0351370:CDS 40.0%
TGGGATAATCGGGTAAGAAT+TGG - chr3_1:17938719-17938738 Msa0351370:intron 40.0%
GGGATAATCGGGTAAGAATT+GGG - chr3_1:17938720-17938739 Msa0351370:intron 40.0%
TGTAAATCCAAACAGGCTCA+AGG + chr3_1:17938751-17938770 None:intergenic 40.0%
CTATTGGCACAACACTTGTA+AGG - chr3_1:17938784-17938803 Msa0351370:intron 40.0%
AAGCTATCCTAGGGAGTTTA+TGG + chr3_1:17938816-17938835 None:intergenic 40.0%
! GGAATATTGTGTAACTTGCC+AGG + chr3_1:17938928-17938947 None:intergenic 40.0%
TCAGACAGTTAAAGGCAATG+GGG + chr3_1:17938992-17939011 None:intergenic 40.0%
AACTGTCTGAATTCATCTGG+TGG - chr3_1:17939002-17939021 Msa0351370:intron 40.0%
AAAATGCAGCTAGTCATCGA+GGG + chr3_1:17939215-17939234 None:intergenic 40.0%
TAAAATGCAGCTAGTCATCG+AGG + chr3_1:17939216-17939235 None:intergenic 40.0%
TATACGCATTCCCCTTTGTA+TGG + chr3_1:17939293-17939312 None:intergenic 40.0%
GGTTATTCGCCACTATCATT+TGG - chr3_1:17939380-17939399 Msa0351370:intron 40.0%
ATTTGTCTGTTTCGCTGTTG+TGG - chr3_1:17939566-17939585 Msa0351370:intron 40.0%
! GCGAACTCTTAGGATTTTAC+TGG - chr3_1:17939680-17939699 Msa0351370:intron 40.0%
! GTGATACCTTGGTTTCCTTT+TGG - chr3_1:17939740-17939759 Msa0351370:intron 40.0%
TTCATAGGTATCTGCCCAAA+AGG + chr3_1:17939758-17939777 None:intergenic 40.0%
CTTCAAAACCTATCACTGCA+TGG - chr3_1:17939800-17939819 Msa0351370:intron 40.0%
TAGGATTACCATGCAGTGAT+AGG + chr3_1:17939811-17939830 None:intergenic 40.0%
! AACAGGTATGCTCTTGTTTC+CGG - chr3_1:17939849-17939868 Msa0351370:intron 40.0%
GCATTTGTCAATGATCCAGA+TGG - chr3_1:17939918-17939937 Msa0351370:intron 40.0%
TTGTCAATGATCCAGATGGA+CGG - chr3_1:17939922-17939941 Msa0351370:intron 40.0%
! AACGTAATGATCGGTTCCAA+AGG - chr3_1:17940000-17940019 Msa0351370:intron 40.0%
TCATATATCACAAGCGGTTC+AGG + chr3_1:17940067-17940086 None:intergenic 40.0%
!!! CTGTTTTGGTGTAATATGGG+AGG - chr3_1:17940267-17940286 Msa0351370:intron 40.0%
GCTGCAAATAATGTGTCAAG+AGG - chr3_1:17940360-17940379 Msa0351370:intron 40.0%
TAGAGAATAATCTCCCCCAA+TGG + chr3_1:17940395-17940414 None:intergenic 40.0%
TTTCACCACTTGTAGGATTG+AGG + chr3_1:17940522-17940541 None:intergenic 40.0%
ATGTCTCAAAGTGCAGTCAA+GGG + chr3_1:17940609-17940628 None:intergenic 40.0%
TATGTCTCAAAGTGCAGTCA+AGG + chr3_1:17940610-17940629 None:intergenic 40.0%
CATAAGCAATCCATCGCATT+TGG + chr3_1:17940670-17940689 None:intergenic 40.0%
CTTGTACACAAATGCAGAGA+TGG + chr3_1:17940725-17940744 None:intergenic 40.0%
AGGAAGTAGTACGTCATGAG+TGG - chr3_1:17934204-17934223 Msa0351370:three_prime_UTR 45.0%
AGTAGTACGTCATGAGTGGT+TGG - chr3_1:17934208-17934227 Msa0351370:three_prime_UTR 45.0%
!! TGAAGGTGGTGGTGGTTTAT+TGG + chr3_1:17934327-17934346 None:intergenic 45.0%
CAATTGACGAATGAAGGTGG+TGG + chr3_1:17934338-17934357 None:intergenic 45.0%
! ACAACCCATGTTGCGGTTTT+TGG + chr3_1:17934366-17934385 None:intergenic 45.0%
ATCACGCAAAGCAACAATGC+CGG + chr3_1:17934444-17934463 None:intergenic 45.0%
CGAGAGTTTGGATTTCCTCA+AGG + chr3_1:17935544-17935563 None:intergenic 45.0%
AGGAAATCCAAACTCTCGGT+CGG - chr3_1:17935546-17935565 Msa0351370:intron 45.0%
ATTGATTAATGTGCAGCGCC+TGG - chr3_1:17935932-17935951 Msa0351370:intron 45.0%
TCCGCTAATATCTGCGATGT+TGG + chr3_1:17936246-17936265 None:intergenic 45.0%
TCACTGGAAGTCTATCGATG+AGG + chr3_1:17936272-17936291 None:intergenic 45.0%
CGATAGACTTCCAGTGAACT+TGG - chr3_1:17936275-17936294 Msa0351370:intron 45.0%
! TTCTAGTGGGCCAGTTAGTA+AGG - chr3_1:17936451-17936470 Msa0351370:intron 45.0%
AGCGTTCAAGCCTTACTAAC+TGG + chr3_1:17936464-17936483 None:intergenic 45.0%
TGTTAACAAATTCCCCGCGA+TGG + chr3_1:17936490-17936509 None:intergenic 45.0%
CTCAAACTGCCAATAGTTGC+CGG + chr3_1:17936519-17936538 None:intergenic 45.0%
CAAGCATGGACAACAAACAC+AGG + chr3_1:17936792-17936811 None:intergenic 45.0%
ACTTGGATTTGCATGAGGCT+TGG - chr3_1:17936961-17936980 Msa0351370:intron 45.0%
AGTCACTTCCGGAATCTGTT+GGG - chr3_1:17937107-17937126 Msa0351370:intron 45.0%
AAGCAACTCCCAACAGATTC+CGG + chr3_1:17937118-17937137 None:intergenic 45.0%
TGTTGGGAGTTGCTTCTCTT+TGG - chr3_1:17937123-17937142 Msa0351370:intron 45.0%
AGGGAAGACCTCAATAAAGG+TGG + chr3_1:17937477-17937496 None:intergenic 45.0%
GGTCTCGAATTTCTTCTGCA+AGG + chr3_1:17937526-17937545 None:intergenic 45.0%
GAGAGATTGCAAACTGACGA+AGG + chr3_1:17937914-17937933 None:intergenic 45.0%
ATGTGGTTTCACACTGCAGT+TGG + chr3_1:17938152-17938171 None:intergenic 45.0%
AAATAAACACACGTACGGGG+AGG - chr3_1:17938222-17938241 Msa0351370:intron 45.0%
AATAAACACACGTACGGGGA+GGG - chr3_1:17938223-17938242 Msa0351370:intron 45.0%
AACCACTAGGCTGTAACAAC+GGG - chr3_1:17938302-17938321 Msa0351370:intron 45.0%
ACACAAGTACTTACACTGCC+TGG - chr3_1:17938907-17938926 Msa0351370:intron 45.0%
AGTTTGTCCTCGATGAGGTA+TGG + chr3_1:17938954-17938973 None:intergenic 45.0%
GGACAAACTCCAGATCCTTT+AGG - chr3_1:17938965-17938984 Msa0351370:intron 45.0%
TAAAGGCAATGGGGTCCTAA+AGG + chr3_1:17938983-17939002 None:intergenic 45.0%
! ATCGAGGGGAGTTAATTTGG+TGG + chr3_1:17939200-17939219 None:intergenic 45.0%
GTCATCGAGGGGAGTTAATT+TGG + chr3_1:17939203-17939222 None:intergenic 45.0%
AAATGCAGCTAGTCATCGAG+GGG + chr3_1:17939214-17939233 None:intergenic 45.0%
ATCTGCCCAAAAGGAAACCA+AGG + chr3_1:17939749-17939768 None:intergenic 45.0%
TGTCAATGATCCAGATGGAC+GGG - chr3_1:17939923-17939942 Msa0351370:intron 45.0%
ATTCTTGAAACCCGTCCATC+TGG + chr3_1:17939936-17939955 None:intergenic 45.0%
AAGAGGAAAGCTGAGCCATT+GGG - chr3_1:17940377-17940396 Msa0351370:intron 45.0%
!! ATTGAGGTCTGGGGCTTTTA+TGG + chr3_1:17940506-17940525 None:intergenic 45.0%
ACTTGTAGGATTGAGGTCTG+GGG + chr3_1:17940515-17940534 None:intergenic 45.0%
CACTTGTAGGATTGAGGTCT+GGG + chr3_1:17940516-17940535 None:intergenic 45.0%
CGCATTTGGACCCAACAAAA+TGG + chr3_1:17940656-17940675 None:intergenic 45.0%
TTTGTTGGGTCCAAATGCGA+TGG - chr3_1:17940657-17940676 Msa0351370:five_prime_UTR 45.0%
CACGACCTATAAAGTGTGCA+CGG - chr3_1:17940695-17940714 Msa0351370:five_prime_UTR 45.0%
GAACACCGTGCACACTTTAT+AGG + chr3_1:17940703-17940722 None:intergenic 45.0%
! TTGACGAATGAAGGTGGTGG+TGG + chr3_1:17934335-17934354 None:intergenic 50.0%
GCGTGAGATTCTAGTGGCTT+TGG + chr3_1:17934411-17934430 None:intergenic 50.0%
AAGCCACTAGAATCTCACGC+TGG - chr3_1:17934411-17934430 Msa0351370:three_prime_UTR 50.0%
!! GTGGCCCATCTAGAAGTGTT+AGG - chr3_1:17934959-17934978 Msa0351370:CDS 50.0%
GATATCTCCGACCGAGAGTT+TGG + chr3_1:17935556-17935575 None:intergenic 50.0%
GACTGCAGTTGACATTCCTG+TGG - chr3_1:17935899-17935918 Msa0351370:intron 50.0%
TGGAGTTTCCCCAAGTTCAC+TGG + chr3_1:17936288-17936307 None:intergenic 50.0%
GCTTGAACGCTTATCCATCG+CGG - chr3_1:17936473-17936492 Msa0351370:intron 50.0%
CTTGAACGCTTATCCATCGC+GGG - chr3_1:17936474-17936493 Msa0351370:intron 50.0%
TTGAACGCTTATCCATCGCG+GGG - chr3_1:17936475-17936494 Msa0351370:intron 50.0%
ACATCCTTGCCGGCAACTAT+TGG - chr3_1:17936507-17936526 Msa0351370:intron 50.0%
CAGTCACTTCCGGAATCTGT+TGG - chr3_1:17937106-17937125 Msa0351370:intron 50.0%
CTCAATAAAGGTGGCCAACC+AGG + chr3_1:17937468-17937487 None:intergenic 50.0%
! CTGGTTGGCCACCTTTATTG+AGG - chr3_1:17937466-17937485 Msa0351370:intron 50.0%
GGGAGGGAAGACCTCAATAA+AGG + chr3_1:17937480-17937499 None:intergenic 50.0%
! TTTGAGCCTTGTGGTTGGGA+GGG + chr3_1:17937496-17937515 None:intergenic 50.0%
ATAAACACACGTACGGGGAG+GGG - chr3_1:17938224-17938243 Msa0351370:intron 50.0%
GTCGTCAGAGCTAAACCACT+AGG - chr3_1:17938289-17938308 Msa0351370:intron 50.0%
ACCACTAGGCTGTAACAACG+GGG - chr3_1:17938303-17938322 Msa0351370:intron 50.0%
! TCTGGAGTTTGTCCTCGATG+AGG + chr3_1:17938959-17938978 None:intergenic 50.0%
CAATGGGGTCCTAAAGGATC+TGG + chr3_1:17938977-17938996 None:intergenic 50.0%
GGTTCCAAAGGTCTCGATGA+GGG - chr3_1:17940012-17940031 Msa0351370:intron 50.0%
CAAGAGGAAAGCTGAGCCAT+TGG - chr3_1:17940376-17940395 Msa0351370:intron 50.0%
AGAGGAAAGCTGAGCCATTG+GGG - chr3_1:17940378-17940397 Msa0351370:intron 50.0%
CCACTTGTAGGATTGAGGTC+TGG + chr3_1:17940517-17940536 None:intergenic 50.0%
CCAGACCTCAATCCTACAAG+TGG - chr3_1:17940514-17940533 Msa0351370:CDS 50.0%
ACTGGGGTTTCACCACTTGT+AGG + chr3_1:17940529-17940548 None:intergenic 50.0%
TCGCCAGCGTGAGATTCTAG+TGG + chr3_1:17934417-17934436 None:intergenic 55.0%
ACGCAAAGCAACAATGCCGG+TGG + chr3_1:17934441-17934460 None:intergenic 55.0%
ACTGCCAATAGTTGCCGGCA+AGG + chr3_1:17936514-17936533 None:intergenic 55.0%
! GTTTGAGCCTTGTGGTTGGG+AGG + chr3_1:17937497-17937516 None:intergenic 55.0%
! CGGGTTTGAGCCTTGTGGTT+GGG + chr3_1:17937500-17937519 None:intergenic 55.0%
! TCGGGTTTGAGCCTTGTGGT+TGG + chr3_1:17937501-17937520 None:intergenic 55.0%
TAAACACACGTACGGGGAGG+GGG - chr3_1:17938225-17938244 Msa0351370:intron 55.0%
TGGAATCCCGGGCTTGAACT+CGG + chr3_1:17938261-17938280 None:intergenic 55.0%
TCCCCGTTGTTACAGCCTAG+TGG + chr3_1:17938307-17938326 None:intergenic 55.0%
GGACAGACCTTGAGCCTGTT+TGG - chr3_1:17938741-17938760 Msa0351370:intron 55.0%
TTCCGGTCCATACCTCATCG+AGG - chr3_1:17938944-17938963 Msa0351370:intron 55.0%
GTCCTCGATGAGGTATGGAC+CGG + chr3_1:17938949-17938968 None:intergenic 55.0%
CGGTTCCAAAGGTCTCGATG+AGG - chr3_1:17940011-17940030 Msa0351370:intron 55.0%
GACACCCTCATCGAGACCTT+TGG + chr3_1:17940019-17940038 None:intergenic 55.0%
GAGGAAAGCTGAGCCATTGG+GGG - chr3_1:17940379-17940398 Msa0351370:intron 55.0%
!! AGGTCTGGGGCTTTTATGGC+GGG + chr3_1:17940502-17940521 None:intergenic 55.0%
!! GAGGTCTGGGGCTTTTATGG+CGG + chr3_1:17940503-17940522 None:intergenic 55.0%
ATCTCACGCTGGCGATCCAC+CGG - chr3_1:17934422-17934441 Msa0351370:three_prime_UTR 60.0%
GGTCTTCCCTCCCAACCACA+AGG - chr3_1:17937487-17937506 Msa0351370:intron 60.0%
GGTCTCGGGTTTGAGCCTTG+TGG + chr3_1:17937505-17937524 None:intergenic 60.0%
TGGTGACCCGAGTTCAAGCC+CGG - chr3_1:17938251-17938270 Msa0351370:intron 60.0%
GGAATCCCGGGCTTGAACTC+GGG + chr3_1:17938260-17938279 None:intergenic 60.0%
GGTGACCCGAGTTCAAGCCC+GGG - chr3_1:17938252-17938271 Msa0351370:intron 65.0%
CACGTACGGGGAGGGGGATG+TGG - chr3_1:17938231-17938250 Msa0351370:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 17934174 17940786 17934174 ID=Msa0351370;Name=Msa0351370
chr3_1 mRNA 17934174 17940786 17934174 ID=Msa0351370-mRNA-1;Parent=Msa0351370;Name=Msa0351370-mRNA-1;_AED=0.11;_eAED=0.11;_QI=203|1|1|1|0.88|0.8|10|654|261
chr3_1 exon 17934174 17934313 17934174 ID=Msa0351370-mRNA-1:exon:4243;Parent=Msa0351370-mRNA-1
chr3_1 exon 17934399 17935023 17934399 ID=Msa0351370-mRNA-1:exon:4242;Parent=Msa0351370-mRNA-1
chr3_1 exon 17935107 17935193 17935107 ID=Msa0351370-mRNA-1:exon:4241;Parent=Msa0351370-mRNA-1
chr3_1 exon 17936984 17937069 17936984 ID=Msa0351370-mRNA-1:exon:4240;Parent=Msa0351370-mRNA-1
chr3_1 exon 17937797 17937887 17937797 ID=Msa0351370-mRNA-1:exon:4239;Parent=Msa0351370-mRNA-1
chr3_1 exon 17938418 17938503 17938418 ID=Msa0351370-mRNA-1:exon:4238;Parent=Msa0351370-mRNA-1
chr3_1 exon 17938597 17938705 17938597 ID=Msa0351370-mRNA-1:exon:4237;Parent=Msa0351370-mRNA-1
chr3_1 exon 17939007 17939053 17939007 ID=Msa0351370-mRNA-1:exon:4236;Parent=Msa0351370-mRNA-1
chr3_1 exon 17939226 17939295 17939226 ID=Msa0351370-mRNA-1:exon:4235;Parent=Msa0351370-mRNA-1
chr3_1 exon 17940485 17940786 17940485 ID=Msa0351370-mRNA-1:exon:4234;Parent=Msa0351370-mRNA-1
chr3_1 five_prime_UTR 17940584 17940786 17940584 ID=Msa0351370-mRNA-1:five_prime_utr;Parent=Msa0351370-mRNA-1
chr3_1 CDS 17940485 17940583 17940485 ID=Msa0351370-mRNA-1:cds;Parent=Msa0351370-mRNA-1
chr3_1 CDS 17939226 17939295 17939226 ID=Msa0351370-mRNA-1:cds;Parent=Msa0351370-mRNA-1
chr3_1 CDS 17939007 17939053 17939007 ID=Msa0351370-mRNA-1:cds;Parent=Msa0351370-mRNA-1
chr3_1 CDS 17938597 17938705 17938597 ID=Msa0351370-mRNA-1:cds;Parent=Msa0351370-mRNA-1
chr3_1 CDS 17938418 17938503 17938418 ID=Msa0351370-mRNA-1:cds;Parent=Msa0351370-mRNA-1
chr3_1 CDS 17937797 17937887 17937797 ID=Msa0351370-mRNA-1:cds;Parent=Msa0351370-mRNA-1
chr3_1 CDS 17936984 17937069 17936984 ID=Msa0351370-mRNA-1:cds;Parent=Msa0351370-mRNA-1
chr3_1 CDS 17935107 17935193 17935107 ID=Msa0351370-mRNA-1:cds;Parent=Msa0351370-mRNA-1
chr3_1 CDS 17934913 17935023 17934913 ID=Msa0351370-mRNA-1:cds;Parent=Msa0351370-mRNA-1
chr3_1 three_prime_UTR 17934399 17934912 17934399 ID=Msa0351370-mRNA-1:three_prime_utr;Parent=Msa0351370-mRNA-1
chr3_1 three_prime_UTR 17934174 17934313 17934174 ID=Msa0351370-mRNA-1:three_prime_utr;Parent=Msa0351370-mRNA-1
Gene Sequence

>Msa0351370

ATGGGTTGTATAGCTAGCAAAAACGCTGAAACCAAAGCCACTAGAATCTCACGCTGGCGATCCACCGGCATTGTTGCTTTGCGTGATTCCAAATTGAAGACTTTTCCAGATGAAATCATCGATTTAGACAGATCTGTTCGGACTCTTGACTTAACGCATAATCGAATAGTTGACATTCCTGTGGAAATTAGCAAATTGATTAATGTGCAGCGCCTGATATTAGCGGACAACCTCATCGATAGACTTCCAGTGAACTTGGGGAAACTCCAATCTCTTAAACTCGTGAACCTTGATGGAAATCGAATTTCTTCCTTGCCAGATGAATTGGGCCAGTTAGTAAGGCTTGAACGCTTATCCATCGCGGGGAATTTGTTAACATCCTTGCCGGCAACTATTGGCAGTTTGAGAAATCTGTTGATTTTAAACGTCTCAAATAACAAGTTACAGTCACTTCCGGAATCTGTTGGGAGTTGCTTCTCTTTGGAAGAATTACAGGCCAATGATAATCTTATTGAAGATCTTCCTTCGTCAGTTTGCAATCTCTCTCACTTGAAGTCACTTTGCTTAGACAACAATAATGTGAAGCAGATACCTATGAATCTATTGAAAGATTGCAAAGCTCTTCAAAACCTATCACTGCATGGTAATCCTATATCAATGGATCAATTTCAACAGATGGACGGGTTTCAAGAATTTGAAGCAAGACGGAAAAAGAAATTTGACAAACAAATTGATTCAAACGTAATGATCGGTTCCAAAGGTCTCGATGAGGGTGTCGATCTATGA
Protein sequence

>Msa0351370

MGCIASKNAETKATRISRWRSTGIVALRDSKLKTFPDEIIDLDRSVRTLDLTHNRIVDIPVEISKLINVQRLILADNLIDRLPVNLGKLQSLKLVNLDGNRISSLPDELGQLVRLERLSIAGNLLTSLPATIGSLRNLLILNVSNNKLQSLPESVGSCFSLEELQANDNLIEDLPSSVCNLSHLKSLCLDNNNVKQIPMNLLKDCKALQNLSLHGNPISMDQFQQMDGFQEFEARRKKKFDKQIDSNVMIGSKGLDEGVDL*