AlfalfaGEDB | Msa0351370

M. sativa cultivar zhongmu-4 / Msa0351370

KEGG: K19613
GO: -
PFAM: PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0351370	XP_013459062.1	98.851	261	3	0	1	261	1	261	0.0	513

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0351370	sp\|B9F655\|PIRL7_ORYSJ	63.218	261	96	0	1	261	1	261	1.62e-121	350

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0351370	I3S3P3	98.851	261	3	0	1	261	1	261	0.0	513

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0351370	Msa0697570	0.802260	6.104646e-49	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0351370	MtrunA17_Chr3g0086371	98.851	261	3	0	1	261	1	261	0.0	513
Msa0351370	MtrunA17_Chr3g0105881	36.400	250	153	4	15	260	148	395	4.59e-49	166
Msa0351370	MtrunA17_Chr5g0407461	41.317	167	97	1	35	201	269	434	3.69e-31	121
Msa0351370	MtrunA17_Chr5g0407461	40.000	160	95	1	59	218	269	427	5.32e-23	97.8
Msa0351370	MtrunA17_Chr5g0407461	31.472	197	109	2	27	198	330	525	1.49e-17	82.0
Msa0351370	MtrunA17_Chr8g0370111	40.268	149	89	0	53	201	275	423	3.69e-26	107
Msa0351370	MtrunA17_Chr8g0370111	38.690	168	102	1	34	201	280	446	8.17e-23	97.4
Msa0351370	MtrunA17_Chr8g0370111	37.324	142	88	1	77	218	276	416	4.32e-20	89.4
Msa0351370	MtrunA17_Chr8g0370111	33.161	193	121	5	32	220	324	512	7.11e-19	85.9
Msa0351370	MtrunA17_Chr4g0054721	33.333	177	117	1	25	201	222	397	5.17e-23	97.8

Showing 1 to 10 of 151 entries

Previous1 2 3 4 5…16Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0351370	AT5G07910.1	75.862	261	62	1	1	260	1	261	1.27e-129	368
Msa0351370	AT2G30105.1	37.751	249	151	2	15	260	124	371	8.12e-53	176
Msa0351370	AT2G17440.1	40.351	171	101	1	31	201	218	387	2.87e-27	110
Msa0351370	AT2G17440.1	32.203	177	117	2	27	201	306	481	1.12e-16	79.7
Msa0351370	AT2G17440.1	32.667	150	77	3	90	216	207	355	1.63e-11	64.3
Msa0351370	AT4G35470.1	38.926	149	91	0	53	201	255	403	5.98e-24	100
Msa0351370	AT4G35470.1	28.571	217	129	3	45	235	270	486	9.04e-17	80.1
Msa0351370	AT4G35470.1	29.000	200	116	2	27	201	299	497	6.47e-14	71.6
Msa0351370	AT4G35470.2	38.926	149	91	0	53	201	255	403	6.06e-24	100
Msa0351370	AT4G35470.2	28.571	217	129	3	45	235	270	486	7.42e-17	80.1

Showing 1 to 10 of 121 entries

Previous1 2 3 4 5…13Next

Find 102 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGTAATGATCGGTTCCAA+AGG	0.592071	3_1:-17934938	Msa0351370:CDS
AAGAAATTCGATTTCCATCA+AGG	0.405385	3_1:+17938612	None:intergenic
AAGAGGAAAGCTGAGCCATT+GGG	0.442143	3_1:-17934561	Msa0351370:three_prime_UTR
AAGCAACTCCCAACAGATTC+CGG	0.366189	3_1:+17937823	None:intergenic
AAGCCACTAGAATCTCACGC+TGG	0.734758	3_1:-17940527	Msa0351370:CDS
AATCATGTATATGAAATCTT+TGG	0.356586	3_1:+17934754	None:intergenic
ACATATATCAAACATCGAGG+TGG	0.715250	3_1:-17940772	None:intergenic
ACATCCTTGCCGGCAACTAT+TGG	0.386833	3_1:-17938431	Msa0351370:CDS
ACCAACATCGCAGATATTAG+CGG	0.543007	3_1:-17938696	Msa0351370:intron
ACGCAAAGCAACAATGCCGG+TGG	0.644555	3_1:+17940500	None:intergenic

Showing 1 to 10 of 102 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGAATCAAAAGCTCAAATTC+TGG	-	chr3_1:17934863-17934882	Msa0351370:three_prime_UTR	30.0%
TTATGGAAGAACATATGTTG+GGG	-	chr3_1:17935481-17935500	Msa0351370:intron	30.0%
AAGGAAAATGAAAGATAGCA+AGG	+	chr3_1:17935636-17935655	None:intergenic	30.0%
TCTAAATCGATGATTTCATC+TGG	+	chr3_1:17935674-17935693	None:intergenic	30.0%
AACCAAAACGTATGTACAAA+AGG	+	chr3_1:17935755-17935774	None:intergenic	30.0%
TTACAACTACTTCAGAGTAA+AGG	+	chr3_1:17935784-17935803	None:intergenic	30.0%
TAAAATCTCATGTTCTTACC+AGG	+	chr3_1:17935953-17935972	None:intergenic	30.0%
CAGTACAGCACTAATAAAAA+TGG	+	chr3_1:17936179-17936198	None:intergenic	30.0%
AAGAAATTCGATTTCCATCA+AGG	+	chr3_1:17936329-17936348	None:intergenic	30.0%
ACTATCAATCAACATACCAT+TGG	+	chr3_1:17937161-17937180	None:intergenic	30.0%

Showing 1 to 10 of 391 entries

Previous1 2 3 4 5…40Next

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	17934174	17940786	17934174	ID=Msa0351370;Name=Msa0351370
chr3_1	mRNA	17934174	17940786	17934174	ID=Msa0351370-mRNA-1;Parent=Msa0351370;Name=Msa0351370-mRNA-1;_AED=0.11;_eAED=0.11;_QI=203\|1\|1\|1\|0.88\|0.8\|10\|654\|261
chr3_1	exon	17934174	17934313	17934174	ID=Msa0351370-mRNA-1:exon:4243;Parent=Msa0351370-mRNA-1
chr3_1	exon	17934399	17935023	17934399	ID=Msa0351370-mRNA-1:exon:4242;Parent=Msa0351370-mRNA-1
chr3_1	exon	17935107	17935193	17935107	ID=Msa0351370-mRNA-1:exon:4241;Parent=Msa0351370-mRNA-1
chr3_1	exon	17936984	17937069	17936984	ID=Msa0351370-mRNA-1:exon:4240;Parent=Msa0351370-mRNA-1
chr3_1	exon	17937797	17937887	17937797	ID=Msa0351370-mRNA-1:exon:4239;Parent=Msa0351370-mRNA-1
chr3_1	exon	17938418	17938503	17938418	ID=Msa0351370-mRNA-1:exon:4238;Parent=Msa0351370-mRNA-1
chr3_1	exon	17938597	17938705	17938597	ID=Msa0351370-mRNA-1:exon:4237;Parent=Msa0351370-mRNA-1
chr3_1	exon	17939007	17939053	17939007	ID=Msa0351370-mRNA-1:exon:4236;Parent=Msa0351370-mRNA-1
chr3_1	exon	17939226	17939295	17939226	ID=Msa0351370-mRNA-1:exon:4235;Parent=Msa0351370-mRNA-1
chr3_1	exon	17940485	17940786	17940485	ID=Msa0351370-mRNA-1:exon:4234;Parent=Msa0351370-mRNA-1
chr3_1	five_prime_UTR	17940584	17940786	17940584	ID=Msa0351370-mRNA-1:five_prime_utr;Parent=Msa0351370-mRNA-1
chr3_1	CDS	17940485	17940583	17940485	ID=Msa0351370-mRNA-1:cds;Parent=Msa0351370-mRNA-1
chr3_1	CDS	17939226	17939295	17939226	ID=Msa0351370-mRNA-1:cds;Parent=Msa0351370-mRNA-1
chr3_1	CDS	17939007	17939053	17939007	ID=Msa0351370-mRNA-1:cds;Parent=Msa0351370-mRNA-1
chr3_1	CDS	17938597	17938705	17938597	ID=Msa0351370-mRNA-1:cds;Parent=Msa0351370-mRNA-1
chr3_1	CDS	17938418	17938503	17938418	ID=Msa0351370-mRNA-1:cds;Parent=Msa0351370-mRNA-1
chr3_1	CDS	17937797	17937887	17937797	ID=Msa0351370-mRNA-1:cds;Parent=Msa0351370-mRNA-1
chr3_1	CDS	17936984	17937069	17936984	ID=Msa0351370-mRNA-1:cds;Parent=Msa0351370-mRNA-1
chr3_1	CDS	17935107	17935193	17935107	ID=Msa0351370-mRNA-1:cds;Parent=Msa0351370-mRNA-1
chr3_1	CDS	17934913	17935023	17934913	ID=Msa0351370-mRNA-1:cds;Parent=Msa0351370-mRNA-1
chr3_1	three_prime_UTR	17934399	17934912	17934399	ID=Msa0351370-mRNA-1:three_prime_utr;Parent=Msa0351370-mRNA-1
chr3_1	three_prime_UTR	17934174	17934313	17934174	ID=Msa0351370-mRNA-1:three_prime_utr;Parent=Msa0351370-mRNA-1

Gene Sequence

>Msa0351370

ATGGGTTGTATAGCTAGCAAAAACGCTGAAACCAAAGCCACTAGAATCTCACGCTGGCGATCCACCGGCATTGTTGCTTTGCGTGATTCCAAATTGAAGACTTTTCCAGATGAAATCATCGATTTAGACAGATCTGTTCGGACTCTTGACTTAACGCATAATCGAATAGTTGACATTCCTGTGGAAATTAGCAAATTGATTAATGTGCAGCGCCTGATATTAGCGGACAACCTCATCGATAGACTTCCAGTGAACTTGGGGAAACTCCAATCTCTTAAACTCGTGAACCTTGATGGAAATCGAATTTCTTCCTTGCCAGATGAATTGGGCCAGTTAGTAAGGCTTGAACGCTTATCCATCGCGGGGAATTTGTTAACATCCTTGCCGGCAACTATTGGCAGTTTGAGAAATCTGTTGATTTTAAACGTCTCAAATAACAAGTTACAGTCACTTCCGGAATCTGTTGGGAGTTGCTTCTCTTTGGAAGAATTACAGGCCAATGATAATCTTATTGAAGATCTTCCTTCGTCAGTTTGCAATCTCTCTCACTTGAAGTCACTTTGCTTAGACAACAATAATGTGAAGCAGATACCTATGAATCTATTGAAAGATTGCAAAGCTCTTCAAAACCTATCACTGCATGGTAATCCTATATCAATGGATCAATTTCAACAGATGGACGGGTTTCAAGAATTTGAAGCAAGACGGAAAAAGAAATTTGACAAACAAATTGATTCAAACGTAATGATCGGTTCCAAAGGTCTCGATGAGGGTGTCGATCTATGA

Protein sequence

>Msa0351370

MGCIASKNAETKATRISRWRSTGIVALRDSKLKTFPDEIIDLDRSVRTLDLTHNRIVDIPVEISKLINVQRLILADNLIDRLPVNLGKLQSLKLVNLDGNRISSLPDELGQLVRLERLSIAGNLLTSLPATIGSLRNLLILNVSNNKLQSLPESVGSCFSLEELQANDNLIEDLPSSVCNLSHLKSLCLDNNNVKQIPMNLLKDCKALQNLSLHGNPISMDQFQQMDGFQEFEARRKKKFDKQIDSNVMIGSKGLDEGVDL*