Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358270 | XP_003602086.1 | 97.912 | 479 | 8 | 1 | 1 | 479 | 1 | 477 | 0.0 | 967 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358270 | sp|Q9SZX3|ASSY_ARATH | 76.872 | 454 | 91 | 3 | 38 | 477 | 39 | 492 | 0.0 | 744 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358270 | G7J524 | 97.912 | 479 | 8 | 1 | 1 | 479 | 1 | 477 | 0.0 | 967 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0358270 | Msa0358300 | 0.803085 | 4.125166e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358270 | MtrunA17_Chr3g0116191 | 97.912 | 479 | 8 | 1 | 1 | 479 | 1 | 477 | 0.0 | 967 |
| Msa0358270 | MtrunA17_Chr5g0418151 | 79.046 | 482 | 96 | 4 | 1 | 479 | 1 | 480 | 0.0 | 804 |
| Msa0358270 | MtrunA17_Chr4g0057681 | 78.170 | 481 | 100 | 3 | 1 | 479 | 1 | 478 | 0.0 | 798 |
| Msa0358270 | MtrunA17_Chr3g0116211 | 92.105 | 38 | 3 | 0 | 228 | 265 | 5 | 42 | 1.77e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358270 | AT4G24830.1 | 76.872 | 454 | 91 | 3 | 38 | 477 | 39 | 492 | 0.0 | 744 |
| Msa0358270 | AT4G24830.2 | 69.383 | 454 | 81 | 4 | 38 | 477 | 39 | 448 | 0.0 | 649 |
Find 134 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGGTTTATAAAGCTTTA+TGG | 0.210704 | 3_1:-43023057 | Msa0358270:CDS |
| CATTTAAATGTTGCTTTGTT+TGG | 0.232185 | 3_1:-43022998 | Msa0358270:exon |
| CCTTAGTCCAGCAACCTTCT+TGG | 0.259493 | 3_1:+43025580 | None:intergenic |
| GGCTCGTTTGGAGCATCCTC+TGG | 0.264292 | 3_1:+43023872 | None:intergenic |
| GCAGCACCAAAACTTCTTCT+TGG | 0.269528 | 3_1:+43026300 | None:intergenic |
| TAAATTAAATAAGGTTGTTC+TGG | 0.279946 | 3_1:-43025555 | Msa0358270:CDS |
| CTCTTCCCGTTCACTGATAC+TGG | 0.283687 | 3_1:+43023513 | None:intergenic |
| TCCAGCAAATGAACCTAAAA+AGG | 0.289546 | 3_1:-43023918 | Msa0358270:CDS |
| AATTGTACCTTTGCAATTAC+AGG | 0.294100 | 3_1:+43024997 | None:intergenic |
| TATAATACCTCTTGCATGTT+TGG | 0.299208 | 3_1:+43026742 | None:intergenic |
| GTTCCTATCCCTGCTATATA+TGG | 0.301022 | 3_1:+43024142 | None:intergenic |
| TCCAAACAACCATAATAAAA+AGG | 0.314770 | 3_1:-43026864 | Msa0358270:five_prime_UTR |
| GTTTGCTTCACTGCTGATCT+AGG | 0.323818 | 3_1:-43025378 | Msa0358270:CDS |
| CATGCTTACTCTGGCTCGTT+TGG | 0.336131 | 3_1:+43023860 | None:intergenic |
| GACAATGAAGGGTGATGTTT+TGG | 0.339040 | 3_1:-43023945 | Msa0358270:intron |
| TTCATAGGGTGCAAGTGAAT+TGG | 0.341666 | 3_1:-43025172 | Msa0358270:intron |
| CTTGTTCTTGACAATGTTTG+TGG | 0.349316 | 3_1:-43022953 | Msa0358270:three_prime_UTR |
| AGCTCAGCAATCAAATTTCC+TGG | 0.349704 | 3_1:+43023483 | None:intergenic |
| GTCTTCCCTATATAAACTAT+AGG | 0.350556 | 3_1:+43023125 | None:intergenic |
| ACTAAGGGGTAAATTAAATA+AGG | 0.360880 | 3_1:-43025564 | Msa0358270:CDS |
| AGAGTCCCTATAGTTTATAT+AGG | 0.371220 | 3_1:-43023131 | Msa0358270:CDS |
| TGGAGGGAGTGGGATATTAC+AGG | 0.373658 | 3_1:-43024227 | Msa0358270:CDS |
| TCTGAGACCAAGAAGGTTGC+TGG | 0.380668 | 3_1:-43025587 | Msa0358270:CDS |
| GTGAGTTTGAAACTGTATAA+AGG | 0.393785 | 3_1:-43023177 | Msa0358270:CDS |
| TTGAGTCCAAGAAGAAGTTT+TGG | 0.398524 | 3_1:-43026306 | Msa0358270:CDS |
| TCTTCCCTATATAAACTATA+GGG | 0.403350 | 3_1:+43023126 | None:intergenic |
| TGAATCGATGGATGCATTCA+TGG | 0.415148 | 3_1:-43023229 | Msa0358270:CDS |
| AAGGCTTTGCCTGGCAGAAC+CGG | 0.421154 | 3_1:+43026507 | None:intergenic |
| CCAAGAAGGTTGCTGGACTA+AGG | 0.421592 | 3_1:-43025580 | Msa0358270:CDS |
| ATTTGAAAGAGGAATTTGTC+AGG | 0.435866 | 3_1:-43025095 | Msa0358270:CDS |
| GAGTCCCTATAGTTTATATA+GGG | 0.452743 | 3_1:-43023130 | Msa0358270:CDS |
| GCTGTCTCGCATGGTTGTAC+AGG | 0.453572 | 3_1:-43024411 | Msa0358270:CDS |
| AATAAATGACGTGAAGTGAT+TGG | 0.455565 | 3_1:-43022911 | Msa0358270:three_prime_UTR |
| GTAGAGATTGGATTTGAGTC+AGG | 0.455723 | 3_1:-43023540 | Msa0358270:CDS |
| ATTGCTGAGCTGAATGAGAT+AGG | 0.456601 | 3_1:-43023471 | Msa0358270:CDS |
| AAGATCTCACAGACTACAAC+AGG | 0.459666 | 3_1:-43023204 | Msa0358270:CDS |
| TATGAGAGGAAGTATTTGCT+TGG | 0.460448 | 3_1:-43025036 | Msa0358270:CDS |
| TTGGTTGAAGACCGCATTGT+AGG | 0.463237 | 3_1:-43023420 | Msa0358270:CDS |
| GGCAGAACCGGTGATGCAGC+AGG | 0.464683 | 3_1:+43026519 | None:intergenic |
| ATCATGGCTCTGATCCTCAT+TGG | 0.465937 | 3_1:+43023030 | None:intergenic |
| ACACATCTGTTGTTGTCCCC+TGG | 0.471500 | 3_1:-43025514 | Msa0358270:CDS |
| TGTCGCAGATATGTAGAGAT+TGG | 0.471518 | 3_1:-43023552 | Msa0358270:intron |
| AGCATCAGCTCCAACTTCAT+TGG | 0.473132 | 3_1:+43024431 | None:intergenic |
| GGAGCCACAACATTTAGCTT+GGG | 0.474080 | 3_1:+43024251 | None:intergenic |
| ATAGGTGGAAGGCATGGAAT+AGG | 0.474520 | 3_1:-43023453 | Msa0358270:CDS |
| TTAAATGCCTTGTTCCATCA+TGG | 0.476647 | 3_1:+43023014 | None:intergenic |
| TAGTGGAGCTTCTCAGTTAG+TGG | 0.476796 | 3_1:-43025124 | Msa0358270:CDS |
| GCATTCCAGTATCAGTGAAC+GGG | 0.482377 | 3_1:-43023518 | Msa0358270:CDS |
| TGGAGCCACAACATTTAGCT+TGG | 0.482661 | 3_1:+43024250 | None:intergenic |
| GCTGCATCACCGGTTCTGCC+AGG | 0.483785 | 3_1:-43026516 | Msa0358270:CDS |
| AGCTAAATGTTGTGGCTCCA+TGG | 0.487692 | 3_1:-43024247 | Msa0358270:CDS |
| ATAGCAGGGATAGGAACCTT+TGG | 0.488482 | 3_1:-43024136 | Msa0358270:CDS |
| TTGTGGCTCCATGGAGGGAG+TGG | 0.488608 | 3_1:-43024238 | Msa0358270:CDS |
| AGTGGTGAAGGATTTGAAAG+AGG | 0.489210 | 3_1:-43025106 | Msa0358270:CDS |
| GTGTTTCCTTGTTTGCGTGC+CGG | 0.490380 | 3_1:-43025066 | Msa0358270:CDS |
| AAAGGTAGTGCTTCTGTGAC+CGG | 0.495990 | 3_1:-43023159 | Msa0358270:CDS |
| TGTTTATGCAGAGAGAACTA+TGG | 0.499223 | 3_1:-43025411 | Msa0358270:intron |
| GTAGGAGCAATAGCAATAGC+TGG | 0.499934 | 3_1:+43026764 | None:intergenic |
| AGCTTCTCAGTTAGTGGTGA+AGG | 0.501088 | 3_1:-43025118 | Msa0358270:CDS |
| TACAGGGAAAGGAAATGATC+AGG | 0.502638 | 3_1:-43024394 | Msa0358270:intron |
| GTTGTTCTGGCTTACAGTGG+TGG | 0.505459 | 3_1:-43025542 | Msa0358270:CDS |
| AGAAACAGTAGCATCTCTAG+AGG | 0.506795 | 3_1:-43026888 | Msa0358270:five_prime_UTR |
| CAAGAAGGTTGCTGGACTAA+GGG | 0.507322 | 3_1:-43025579 | Msa0358270:CDS |
| TAGAGCACCTGCTGCATCAC+CGG | 0.510676 | 3_1:-43026526 | Msa0358270:CDS |
| TGAATGAAGAAGGCTTTGCC+TGG | 0.511880 | 3_1:+43026498 | None:intergenic |
| TATGCAGAGTTAGTGTATGC+TGG | 0.511989 | 3_1:-43023273 | Msa0358270:CDS |
| AGTTAGTGTATGCTGGAAGA+TGG | 0.513144 | 3_1:-43023266 | Msa0358270:CDS |
| AATATGTATATACCTCAGCC+AGG | 0.517030 | 3_1:+43025496 | None:intergenic |
| GCTCGTTTGGAGCATCCTCT+GGG | 0.518543 | 3_1:+43023873 | None:intergenic |
| TGGAATAGGCCGTGTCGACT+TGG | 0.524552 | 3_1:-43023439 | Msa0358270:CDS |
| ATTGGAAGGTTTAGAAGAGA+AGG | 0.525282 | 3_1:-43025154 | Msa0358270:CDS |
| CTCACAGACTACAACAGGTT+CGG | 0.528369 | 3_1:-43023199 | Msa0358270:CDS |
| GTGGATATTGCCAATGAAGT+TGG | 0.528679 | 3_1:-43024441 | Msa0358270:CDS |
| GACATTTCTTCATTTGAGAG+TGG | 0.529835 | 3_1:-43023105 | Msa0358270:CDS |
| ATACCTCTTGCATGTTTGGT+AGG | 0.530313 | 3_1:+43026746 | None:intergenic |
| GTAATATCCCACTCCCTCCA+TGG | 0.530801 | 3_1:+43024230 | None:intergenic |
| ATAATCATGCTGATGCTGTT+GGG | 0.532361 | 3_1:-43023074 | Msa0358270:CDS |
| TATAATCATGCTGATGCTGT+TGG | 0.532427 | 3_1:-43023075 | Msa0358270:CDS |
| CTGTTGTTGTCCCCTGGCTG+AGG | 0.533002 | 3_1:-43025508 | Msa0358270:intron |
| CGAGGAGTTTACGAAACTCC+AGG | 0.546528 | 3_1:-43023387 | Msa0358270:CDS |
| AATCCATATATAGCAGGGAT+AGG | 0.548987 | 3_1:-43024145 | Msa0358270:CDS |
| TGATCCACTTCGTGAATCGA+TGG | 0.554016 | 3_1:-43023241 | Msa0358270:CDS |
| TCGCATGGTTGTACAGGGAA+AGG | 0.556084 | 3_1:-43024405 | Msa0358270:CDS |
| GCATCCATCGATTCACGAAG+TGG | 0.557277 | 3_1:+43023237 | None:intergenic |
| GAAGAGAAGGCAAAAGCTAG+TGG | 0.557945 | 3_1:-43025141 | Msa0358270:CDS |
| AGAAATTTCTGAGACCAAGA+AGG | 0.558697 | 3_1:-43025594 | Msa0358270:CDS |
| GGCACCTCTCTGAATGAAGA+AGG | 0.562224 | 3_1:+43026488 | None:intergenic |
| TAGGAGCAATAGCAATAGCT+GGG | 0.566627 | 3_1:+43026765 | None:intergenic |
| GTGAAAAGAATGGTGCCACC+TGG | 0.566636 | 3_1:+43023369 | None:intergenic |
| GGCATTCCAGTATCAGTGAA+CGG | 0.567431 | 3_1:-43023519 | Msa0358270:CDS |
| GGAGCTGATGCTGTCTCGCA+TGG | 0.568483 | 3_1:-43024420 | Msa0358270:CDS |
| TTTGAAAGAGGAATTTGTCA+GGG | 0.571609 | 3_1:-43025094 | Msa0358270:CDS |
| CTGTCTCGCATGGTTGTACA+GGG | 0.574040 | 3_1:-43024410 | Msa0358270:CDS |
| AATGAGGATCAGAGCCATGA+TGG | 0.575339 | 3_1:-43023028 | Msa0358270:CDS |
| CTGGAGTTTCGTAAACTCCT+CGG | 0.575914 | 3_1:+43023388 | None:intergenic |
| TGGCTCTGATCCTCATTGGA+AGG | 0.578580 | 3_1:+43023034 | None:intergenic |
| AACGGGAAGAGACTTTCTCC+AGG | 0.583209 | 3_1:-43023501 | Msa0358270:CDS |
| AAATGTTGTGGCTCCATGGA+GGG | 0.586068 | 3_1:-43024243 | Msa0358270:CDS |
| TGCTAAGAAGCATAACGTAC+CGG | 0.586709 | 3_1:-43024183 | Msa0358270:CDS |
| ATTGCACCGGCACGCAAACA+AGG | 0.589489 | 3_1:+43025060 | None:intergenic |
| CTTCCTCTCATAAATTGCAC+CGG | 0.594909 | 3_1:+43025047 | None:intergenic |
| AGCTCGCCCTGTAATTGCAA+AGG | 0.595419 | 3_1:-43025004 | Msa0358270:intron |
| ATTGTACCTTTGCAATTACA+GGG | 0.595573 | 3_1:+43024998 | None:intergenic |
| AATGAGATAGGTGGAAGGCA+TGG | 0.596201 | 3_1:-43023459 | Msa0358270:CDS |
| GAATCCCAAGCTAAATGTTG+TGG | 0.596495 | 3_1:-43024255 | Msa0358270:CDS |
| ATCAGAGCCATGATGGAACA+AGG | 0.603309 | 3_1:-43023021 | Msa0358270:CDS |
| TCTTGCTGCAGTGAAAAGAA+TGG | 0.603627 | 3_1:+43023359 | None:intergenic |
| TAGGGTGCAAGTGAATTGGA+AGG | 0.605599 | 3_1:-43025168 | Msa0358270:CDS |
| ATATGTATATACCTCAGCCA+GGG | 0.606393 | 3_1:+43025497 | None:intergenic |
| GAAACAGTAGCATCTCTAGA+GGG | 0.606612 | 3_1:-43026887 | Msa0358270:five_prime_UTR |
| CCTCGTGAGTTATGTGCCAA+AGG | 0.606917 | 3_1:+43024120 | None:intergenic |
| AGCTTTATGGCCTTCCAATG+AGG | 0.611499 | 3_1:-43023044 | Msa0358270:CDS |
| ACTGACTTGACAGGCTATGG+TGG | 0.612505 | 3_1:-43024460 | Msa0358270:intron |
| GTAGTGCTTCTGTGACCGGT+CGG | 0.625515 | 3_1:-43023155 | Msa0358270:CDS |
| TGTGGCTCCATGGAGGGAGT+GGG | 0.626032 | 3_1:-43024237 | Msa0358270:CDS |
| GCTCCTACCAAACATGCAAG+AGG | 0.634689 | 3_1:-43026749 | Msa0358270:intron |
| AAGAAGGTTGCTGGACTAAG+GGG | 0.637227 | 3_1:-43025578 | Msa0358270:CDS |
| GGTGCTGCAAGTAAACCTCA+AGG | 0.648225 | 3_1:-43026285 | Msa0358270:intron |
| GTGCCGGTGCAATTTATGAG+AGG | 0.652125 | 3_1:-43025050 | Msa0358270:CDS |
| AAGGTTGTTCTGGCTTACAG+TGG | 0.656034 | 3_1:-43025545 | Msa0358270:CDS |
| AGCTGAATGAGATAGGTGGA+AGG | 0.657500 | 3_1:-43023464 | Msa0358270:CDS |
| ACTATAGGGACTCTTCCGAC+CGG | 0.659504 | 3_1:+43023140 | None:intergenic |
| ATTGTAGGCATGAAGAGCCG+AGG | 0.671284 | 3_1:-43023405 | Msa0358270:CDS |
| GGTCTTCAACCAAGTCGACA+CGG | 0.676556 | 3_1:+43023430 | None:intergenic |
| TAAATGTTGTGGCTCCATGG+AGG | 0.684367 | 3_1:-43024244 | Msa0358270:CDS |
| GGAGGGAGTGGGATATTACA+GGG | 0.688013 | 3_1:-43024226 | Msa0358270:CDS |
| AAAGCCTTCTTCATTCAGAG+AGG | 0.692538 | 3_1:-43026492 | Msa0358270:intron |
| TATGTATATACCTCAGCCAG+GGG | 0.696870 | 3_1:+43025498 | None:intergenic |
| CCTTTGGCACATAACTCACG+AGG | 0.700132 | 3_1:-43024120 | Msa0358270:intron |
| GGCTCTTCATGCCTACAATG+CGG | 0.703012 | 3_1:+43023409 | None:intergenic |
| AGGAGCAATAGCAATAGCTG+GGG | 0.703527 | 3_1:+43026766 | None:intergenic |
| GCTGAGCTGAATGAGATAGG+TGG | 0.717992 | 3_1:-43023468 | Msa0358270:CDS |
| GGAGTTTACGAAACTCCAGG+TGG | 0.771741 | 3_1:-43023384 | Msa0358270:CDS |
| CATGTTGACTGTAGACCCAG+AGG | 0.800649 | 3_1:-43023888 | Msa0358270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTGAAAGATATATTT+GGG | + | chr3_1:43024008-43024027 | None:intergenic | 10.0% |
| !!! | AATTTTTTGAAAGATATATT+TGG | + | chr3_1:43024009-43024028 | None:intergenic | 10.0% |
| !!! | TTTTTTTATAGATATCAAAA+TGG | + | chr3_1:43025067-43025086 | None:intergenic | 10.0% |
| !! | ATGTATTATTAATTACTATT+AGG | - | chr3_1:43025454-43025473 | Msa0358270:intron | 10.0% |
| !! | TGTTATATTTATAATTGTTA+AGG | - | chr3_1:43025518-43025537 | Msa0358270:CDS | 10.0% |
| !! | AAATACTAAAATTCAAACAA+TGG | + | chr3_1:43023403-43023422 | None:intergenic | 15.0% |
| !!! | CAATTTTCTCAAATTATTAT+TGG | + | chr3_1:43023652-43023671 | None:intergenic | 15.0% |
| !!! | AGGCTATAATTTTTTTTTTT+AGG | + | chr3_1:43023790-43023809 | None:intergenic | 15.0% |
| !!! | TATACATCTTTATTTTACTA+CGG | - | chr3_1:43024057-43024076 | Msa0358270:intron | 15.0% |
| !! | GAAAATAAAAATGTGAAATT+CGG | + | chr3_1:43025266-43025285 | None:intergenic | 15.0% |
| !! | AAATAATTGGTATGATTAAT+TGG | + | chr3_1:43025488-43025507 | None:intergenic | 15.0% |
| !! | TATTTATAATTGTTAAGGTT+CGG | - | chr3_1:43025523-43025542 | Msa0358270:CDS | 15.0% |
| !!! | AATGTTTTAATTTGCATTAA+TGG | + | chr3_1:43026200-43026219 | None:intergenic | 15.0% |
| !! | ATATTCTGCAAAAACTAATA+TGG | - | chr3_1:43023005-43023024 | Msa0358270:exon | 20.0% |
| !! | AAAAATAGTAAACAACAGTT+AGG | + | chr3_1:43023271-43023290 | None:intergenic | 20.0% |
| !! | TATAACAAATTGCATCAAAA+GGG | + | chr3_1:43023947-43023966 | None:intergenic | 20.0% |
| !! | ATATAACAAATTGCATCAAA+AGG | + | chr3_1:43023948-43023967 | None:intergenic | 20.0% |
| !!! | TAGAAATCTTGGTTTTATAT+GGG | + | chr3_1:43023975-43023994 | None:intergenic | 20.0% |
| !!! | ATAGAAATCTTGGTTTTATA+TGG | + | chr3_1:43023976-43023995 | None:intergenic | 20.0% |
| !!! | ATACATCTTTATTTTACTAC+GGG | - | chr3_1:43024058-43024077 | Msa0358270:intron | 20.0% |
| !!! | TTTTAAGTTTAATGTCTCTA+CGG | - | chr3_1:43024155-43024174 | Msa0358270:CDS | 20.0% |
| !! | TAAATTAAATAAGGTTGTTC+TGG | - | chr3_1:43024269-43024288 | Msa0358270:CDS | 20.0% |
| !! | TGTACAAATTATAACATACT+TGG | + | chr3_1:43024472-43024491 | None:intergenic | 20.0% |
| !! | AATAACAAAGACTAAATTGA+TGG | + | chr3_1:43024528-43024547 | None:intergenic | 20.0% |
| !! | AAACAAATGCTAAATTTCAT+AGG | - | chr3_1:43024637-43024656 | Msa0358270:intron | 20.0% |
| !! | AACAAATGCTAAATTTCATA+GGG | - | chr3_1:43024638-43024657 | Msa0358270:intron | 20.0% |
| !!! | TTTTATAGATATCAAAATGG+AGG | + | chr3_1:43025064-43025083 | None:intergenic | 20.0% |
| !! | CAAATCATAAAACATAGTAT+TGG | + | chr3_1:43025779-43025798 | None:intergenic | 20.0% |
| !!! | TATAGCCATGTTTTTTAAAA+AGG | - | chr3_1:43026004-43026023 | Msa0358270:intron | 20.0% |
| !!! | TTAATTTGCATTAATGGTTA+TGG | + | chr3_1:43026194-43026213 | None:intergenic | 20.0% |
| ! | TCCAAACAACCATAATAAAA+AGG | - | chr3_1:43022960-43022979 | Msa0358270:three_prime_UTR | 25.0% |
| !! | ACCTTTTTATTATGGTTGTT+TGG | + | chr3_1:43022964-43022983 | None:intergenic | 25.0% |
| ! | AAACAACCATAATAAAAAGG+TGG | - | chr3_1:43022963-43022982 | Msa0358270:three_prime_UTR | 25.0% |
| !!! | GCATGTTTGTGTATTTTTAA+GGG | + | chr3_1:43023360-43023379 | None:intergenic | 25.0% |
| !!! | TGCATGTTTGTGTATTTTTA+AGG | + | chr3_1:43023361-43023380 | None:intergenic | 25.0% |
| !!! | TGGATGTTTTATTTTTCTGA+TGG | - | chr3_1:43023453-43023472 | Msa0358270:CDS | 25.0% |
| !!! | AGAAATCTTGGTTTTATATG+GGG | + | chr3_1:43023974-43023993 | None:intergenic | 25.0% |
| ! | TTTGAAAGATATATTTGGGA+GGG | + | chr3_1:43024004-43024023 | None:intergenic | 25.0% |
| !!! | TTTTGAAAGATATATTTGGG+AGG | + | chr3_1:43024005-43024024 | None:intergenic | 25.0% |
| ! | ACTAAGGGGTAAATTAAATA+AGG | - | chr3_1:43024260-43024279 | Msa0358270:CDS | 25.0% |
| ! | CTAATTGTGTGAATTTGAAA+AGG | + | chr3_1:43024366-43024385 | None:intergenic | 25.0% |
| !! | TGCAGATTTTCATATACTTT+AGG | - | chr3_1:43024567-43024586 | Msa0358270:intron | 25.0% |
| !! | GCAGATTTTCATATACTTTA+GGG | - | chr3_1:43024568-43024587 | Msa0358270:intron | 25.0% |
| ! | AAAACAATCACAAAGCATAA+GGG | + | chr3_1:43024908-43024927 | None:intergenic | 25.0% |
| ! | AAAAACAATCACAAAGCATA+AGG | + | chr3_1:43024909-43024928 | None:intergenic | 25.0% |
| ! | ATTTGAAAAGTGATACTAAG+AGG | + | chr3_1:43025172-43025191 | None:intergenic | 25.0% |
| ! | ACACGTTAGAAGAAAATAAT+TGG | + | chr3_1:43025501-43025520 | None:intergenic | 25.0% |
| !!! | TATATGGATTTTTTGGTTAC+AGG | + | chr3_1:43025669-43025688 | None:intergenic | 25.0% |
| ! | CAAAAAATCCATATATAGCA+GGG | - | chr3_1:43025674-43025693 | Msa0358270:intron | 25.0% |
| !!! | AATTGTAGCTCTAAATCTAA+TGG | - | chr3_1:43025746-43025765 | Msa0358270:intron | 25.0% |
| !! | AACATGTACATATCCTTTTT+AGG | + | chr3_1:43025922-43025941 | None:intergenic | 25.0% |
| !! | CTTTAGTTTCATTACTTACT+TGG | - | chr3_1:43026243-43026262 | Msa0358270:intron | 25.0% |
| ! | TCTTCCCTATATAAACTATA+GGG | + | chr3_1:43026701-43026720 | None:intergenic | 25.0% |
| !!! | CATTTAAATGTTGCTTTGTT+TGG | - | chr3_1:43026826-43026845 | Msa0358270:five_prime_UTR | 25.0% |
| !! | TTGTGGAACTTTTATTATTG+TGG | - | chr3_1:43026888-43026907 | Msa0358270:five_prime_UTR | 25.0% |
| !! | TGTGGAACTTTTATTATTGT+GGG | - | chr3_1:43026889-43026908 | Msa0358270:five_prime_UTR | 25.0% |
| TATAATACCTCTTGCATGTT+TGG | + | chr3_1:43023085-43023104 | None:intergenic | 30.0% | |
| ATCATAATCTGCAAGATGAA+AGG | + | chr3_1:43023168-43023187 | None:intergenic | 30.0% | |
| !! | AATTGACATTTTGAGAACTG+TGG | - | chr3_1:43023218-43023237 | Msa0358270:CDS | 30.0% |
| ATAGTAAACAACAGTTAGGA+GGG | + | chr3_1:43023267-43023286 | None:intergenic | 30.0% | |
| AATAGTAAACAACAGTTAGG+AGG | + | chr3_1:43023268-43023287 | None:intergenic | 30.0% | |
| ! | GTTCTTTCTTTTGCATGTTT+TGG | - | chr3_1:43023475-43023494 | Msa0358270:CDS | 30.0% |
| ! | TATAGCAAGAACTGGATTTT+TGG | - | chr3_1:43023839-43023858 | Msa0358270:intron | 30.0% |
| ! | ATAGCAAGAACTGGATTTTT+GGG | - | chr3_1:43023840-43023859 | Msa0358270:intron | 30.0% |
| AGTAAAATATACCTACAGAC+AGG | - | chr3_1:43023872-43023891 | Msa0358270:CDS | 30.0% | |
| GTCTTTAATGCCAATGATTT+GGG | + | chr3_1:43023898-43023917 | None:intergenic | 30.0% | |
| AGTCTTTAATGCCAATGATT+TGG | + | chr3_1:43023899-43023918 | None:intergenic | 30.0% | |
| AAATCATTGGCATTAAAGAC+TGG | - | chr3_1:43023898-43023917 | Msa0358270:CDS | 30.0% | |
| ! | ACTGAAGTCTGTTATTGTTT+TGG | - | chr3_1:43023921-43023940 | Msa0358270:CDS | 30.0% |
| ATTTGTTTAACCAAACATGC+AGG | + | chr3_1:43024625-43024644 | None:intergenic | 30.0% | |
| ATTTGAAAGAGGAATTTGTC+AGG | - | chr3_1:43024729-43024748 | Msa0358270:intron | 30.0% | |
| TTTGAAAGAGGAATTTGTCA+GGG | - | chr3_1:43024730-43024749 | Msa0358270:intron | 30.0% | |
| ATTGTACCTTTGCAATTACA+GGG | + | chr3_1:43024829-43024848 | None:intergenic | 30.0% | |
| AATTGTACCTTTGCAATTAC+AGG | + | chr3_1:43024830-43024849 | None:intergenic | 30.0% | |
| CAATTAAAGCGAAATTTCAC+TGG | + | chr3_1:43024988-43025007 | None:intergenic | 30.0% | |
| TCTCATAATTGTTCACTCTA+AGG | - | chr3_1:43025105-43025124 | Msa0358270:CDS | 30.0% | |
| TTTGCTGAGAATCATAATGA+TGG | + | chr3_1:43025214-43025233 | None:intergenic | 30.0% | |
| ACACAAATGTTGAGAACAAA+TGG | + | chr3_1:43025291-43025310 | None:intergenic | 30.0% | |
| TGCATGTTTATATGCAATAC+TGG | + | chr3_1:43025335-43025354 | None:intergenic | 30.0% | |
| !!! | CCTGCTATATATGGATTTTT+TGG | + | chr3_1:43025676-43025695 | None:intergenic | 30.0% |
| CCAAAAAATCCATATATAGC+AGG | - | chr3_1:43025673-43025692 | Msa0358270:intron | 30.0% | |
| !!! | TGTTTTATGATTTGCTGTCA+TGG | - | chr3_1:43025785-43025804 | Msa0358270:intron | 30.0% |
| TTTGCAATTTGTGACAATGA+AGG | - | chr3_1:43025867-43025886 | Msa0358270:intron | 30.0% | |
| TTGCAATTTGTGACAATGAA+GGG | - | chr3_1:43025868-43025887 | Msa0358270:intron | 30.0% | |
| !! | ATGGGCCTTTTTAAAAAACA+TGG | + | chr3_1:43026012-43026031 | None:intergenic | 30.0% |
| TTAAAAAGGCCCATAAGTTA+TGG | - | chr3_1:43026018-43026037 | Msa0358270:intron | 30.0% | |
| TAAAAAGGCCCATAAGTTAT+GGG | - | chr3_1:43026019-43026038 | Msa0358270:intron | 30.0% | |
| ATATGTGAATGCGATTATCA+AGG | - | chr3_1:43026062-43026081 | Msa0358270:intron | 30.0% | |
| ! | GTGAGTTTGAAACTGTATAA+AGG | - | chr3_1:43026647-43026666 | Msa0358270:intron | 30.0% |
| AGAGTCCCTATAGTTTATAT+AGG | - | chr3_1:43026693-43026712 | Msa0358270:intron | 30.0% | |
| GAGTCCCTATAGTTTATATA+GGG | - | chr3_1:43026694-43026713 | Msa0358270:intron | 30.0% | |
| GTCTTCCCTATATAAACTAT+AGG | + | chr3_1:43026702-43026721 | None:intergenic | 30.0% | |
| GTTGGGTTTATAAAGCTTTA+TGG | - | chr3_1:43026767-43026786 | Msa0358270:CDS | 30.0% | |
| AATAAATGACGTGAAGTGAT+TGG | - | chr3_1:43026913-43026932 | Msa0358270:five_prime_UTR | 30.0% | |
| ! | CACTCACCACCTTTTTATTA+TGG | + | chr3_1:43022972-43022991 | None:intergenic | 35.0% |
| AATACACAAACATGCATGCA+TGG | - | chr3_1:43023365-43023384 | Msa0358270:CDS | 35.0% | |
| !! | TGATATGCATGTGCTTTTTG+TGG | - | chr3_1:43023433-43023452 | Msa0358270:CDS | 35.0% |
| ! | TTGAGTCCAAGAAGAAGTTT+TGG | - | chr3_1:43023518-43023537 | Msa0358270:CDS | 35.0% |
| TGTCATACACCAGATATGTT+CGG | - | chr3_1:43023700-43023719 | Msa0358270:intron | 35.0% | |
| ! | TAGCAAGAACTGGATTTTTG+GGG | - | chr3_1:43023841-43023860 | Msa0358270:intron | 35.0% |
| ! | GAGGGTGTAAATAGAAATCT+TGG | + | chr3_1:43023986-43024005 | None:intergenic | 35.0% |
| TTATCAGATAACACCGAACA+GGG | + | chr3_1:43024129-43024148 | None:intergenic | 35.0% | |
| ATTATCAGATAACACCGAAC+AGG | + | chr3_1:43024130-43024149 | None:intergenic | 35.0% | |
| !! | AGAAATTTCTGAGACCAAGA+AGG | - | chr3_1:43024230-43024249 | Msa0358270:CDS | 35.0% |
| ATATGTATATACCTCAGCCA+GGG | + | chr3_1:43024330-43024349 | None:intergenic | 35.0% | |
| AATATGTATATACCTCAGCC+AGG | + | chr3_1:43024331-43024350 | None:intergenic | 35.0% | |
| TGTTTATGCAGAGAGAACTA+TGG | - | chr3_1:43024413-43024432 | Msa0358270:CDS | 35.0% | |
| TACCTTAATTCCTGCATGTT+TGG | - | chr3_1:43024612-43024631 | Msa0358270:intron | 35.0% | |
| AACCAAACATGCAGGAATTA+AGG | + | chr3_1:43024617-43024636 | None:intergenic | 35.0% | |
| ATTGGAAGGTTTAGAAGAGA+AGG | - | chr3_1:43024670-43024689 | Msa0358270:intron | 35.0% | |
| !! | TATGAGAGGAAGTATTTGCT+TGG | - | chr3_1:43024788-43024807 | Msa0358270:intron | 35.0% |
| AAAATGGAGGTTCTTGGAAT+TGG | + | chr3_1:43025051-43025070 | None:intergenic | 35.0% | |
| GATATCAAAATGGAGGTTCT+TGG | + | chr3_1:43025057-43025076 | None:intergenic | 35.0% | |
| GTAATATCGAAAGTTAGGTG+AGG | + | chr3_1:43025131-43025150 | None:intergenic | 35.0% | |
| ACCTAACTTTCGATATTACC+AGG | - | chr3_1:43025132-43025151 | Msa0358270:CDS | 35.0% | |
| TGATACTAAGAGGTAACACA+AGG | + | chr3_1:43025162-43025181 | None:intergenic | 35.0% | |
| TGCAATACTGGTAAAGAATC+TGG | + | chr3_1:43025323-43025342 | None:intergenic | 35.0% | |
| !!! | GATTTTTTGGTTACAGGAAC+CGG | + | chr3_1:43025663-43025682 | None:intergenic | 35.0% |
| AATCCATATATAGCAGGGAT+AGG | - | chr3_1:43025679-43025698 | Msa0358270:intron | 35.0% | |
| CTTGAACGTGATCTTAAATG+AGG | + | chr3_1:43025823-43025842 | None:intergenic | 35.0% | |
| TCCAGCAAATGAACCTAAAA+AGG | - | chr3_1:43025906-43025925 | Msa0358270:intron | 35.0% | |
| !!! | TCCTTTTTAGGTTCATTTGC+TGG | + | chr3_1:43025910-43025929 | None:intergenic | 35.0% |
| CATTAACAACATGCTTACTC+TGG | + | chr3_1:43025976-43025995 | None:intergenic | 35.0% | |
| GATTATCAAGGATTGCAACA+TGG | - | chr3_1:43026074-43026093 | Msa0358270:intron | 35.0% | |
| TTTGATATCACAGAGAATCG+CGG | + | chr3_1:43026158-43026177 | None:intergenic | 35.0% | |
| GACATTTCTTCATTTGAGAG+TGG | - | chr3_1:43026719-43026738 | Msa0358270:intron | 35.0% | |
| TATAATCATGCTGATGCTGT+TGG | - | chr3_1:43026749-43026768 | Msa0358270:intron | 35.0% | |
| ATAATCATGCTGATGCTGTT+GGG | - | chr3_1:43026750-43026769 | Msa0358270:CDS | 35.0% | |
| ! | TTAAATGCCTTGTTCCATCA+TGG | + | chr3_1:43026813-43026832 | None:intergenic | 35.0% |
| CTTGTTCTTGACAATGTTTG+TGG | - | chr3_1:43026871-43026890 | Msa0358270:five_prime_UTR | 35.0% | |
| AGAAACAGTAGCATCTCTAG+AGG | - | chr3_1:43022936-43022955 | Msa0358270:three_prime_UTR | 40.0% | |
| GAAACAGTAGCATCTCTAGA+GGG | - | chr3_1:43022937-43022956 | Msa0358270:three_prime_UTR | 40.0% | |
| TAGGAGCAATAGCAATAGCT+GGG | + | chr3_1:43023062-43023081 | None:intergenic | 40.0% | |
| ATACCTCTTGCATGTTTGGT+AGG | + | chr3_1:43023081-43023100 | None:intergenic | 40.0% | |
| AAAGCCTTCTTCATTCAGAG+AGG | - | chr3_1:43023332-43023351 | Msa0358270:CDS | 40.0% | |
| AACCTCAAGGTGAGATTGTT+TGG | - | chr3_1:43023552-43023571 | Msa0358270:intron | 40.0% | |
| TGGTGTATGACACTAACACA+TGG | + | chr3_1:43023692-43023711 | None:intergenic | 40.0% | |
| !!! | TTTTTTTAGGCCCATACCCT+GGG | + | chr3_1:43023777-43023796 | None:intergenic | 40.0% |
| !!! | TTTTTTTTAGGCCCATACCC+TGG | + | chr3_1:43023778-43023797 | None:intergenic | 40.0% |
| !! | AGCAAGAACTGGATTTTTGG+GGG | - | chr3_1:43023842-43023861 | Msa0358270:intron | 40.0% |
| TATGTATATACCTCAGCCAG+GGG | + | chr3_1:43024329-43024348 | None:intergenic | 40.0% | |
| TTCATAGGGTGCAAGTGAAT+TGG | - | chr3_1:43024652-43024671 | Msa0358270:intron | 40.0% | |
| AGTGGTGAAGGATTTGAAAG+AGG | - | chr3_1:43024718-43024737 | Msa0358270:intron | 40.0% | |
| CTTCCTCTCATAAATTGCAC+CGG | + | chr3_1:43024780-43024799 | None:intergenic | 40.0% | |
| ! | GCAAAGGTACAATTCTGCTT+TGG | - | chr3_1:43024836-43024855 | Msa0358270:intron | 40.0% |
| CAATCACAAAGCATAAGGGT+TGG | + | chr3_1:43024904-43024923 | None:intergenic | 40.0% | |
| CTAACTCAACCCTACATAAC+CGG | + | chr3_1:43025020-43025039 | None:intergenic | 40.0% | |
| AGGTTCTTGGAATTGGATTC+GGG | + | chr3_1:43025044-43025063 | None:intergenic | 40.0% | |
| GAGGTTCTTGGAATTGGATT+CGG | + | chr3_1:43025045-43025064 | None:intergenic | 40.0% | |
| GCCTGGTAATATCGAAAGTT+AGG | + | chr3_1:43025136-43025155 | None:intergenic | 40.0% | |
| CTGGTAAAGAATCTGGTACA+AGG | + | chr3_1:43025316-43025335 | None:intergenic | 40.0% | |
| !! | TTGATGTCTACTGACTTGAC+AGG | - | chr3_1:43025355-43025374 | Msa0358270:intron | 40.0% |
| GTGGATATTGCCAATGAAGT+TGG | - | chr3_1:43025383-43025402 | Msa0358270:CDS | 40.0% | |
| TACAGGGAAAGGAAATGATC+AGG | - | chr3_1:43025430-43025449 | Msa0358270:intron | 40.0% | |
| CTTGGGATTCAGAGCAAAAA+AGG | + | chr3_1:43025559-43025578 | None:intergenic | 40.0% | |
| GAATCCCAAGCTAAATGTTG+TGG | - | chr3_1:43025569-43025588 | Msa0358270:CDS | 40.0% | |
| ! | TGCTAAGAAGCATAACGTAC+CGG | - | chr3_1:43025641-43025660 | Msa0358270:intron | 40.0% |
| GTTCCTATCCCTGCTATATA+TGG | + | chr3_1:43025685-43025704 | None:intergenic | 40.0% | |
| ! | GACAATGAAGGGTGATGTTT+TGG | - | chr3_1:43025879-43025898 | Msa0358270:intron | 40.0% |
| CTCAATGGCCCATAACTTAT+GGG | + | chr3_1:43026030-43026049 | None:intergenic | 40.0% | |
| TATGACGAATGATGCCTCAA+TGG | + | chr3_1:43026045-43026064 | None:intergenic | 40.0% | |
| TGTCGCAGATATGTAGAGAT+TGG | - | chr3_1:43026272-43026291 | Msa0358270:intron | 40.0% | |
| GTAGAGATTGGATTTGAGTC+AGG | - | chr3_1:43026284-43026303 | Msa0358270:intron | 40.0% | |
| AGCTCAGCAATCAAATTTCC+TGG | + | chr3_1:43026344-43026363 | None:intergenic | 40.0% | |
| ATTGCTGAGCTGAATGAGAT+AGG | - | chr3_1:43026353-43026372 | Msa0358270:intron | 40.0% | |
| TCTTGCTGCAGTGAAAAGAA+TGG | + | chr3_1:43026468-43026487 | None:intergenic | 40.0% | |
| TATGCAGAGTTAGTGTATGC+TGG | - | chr3_1:43026551-43026570 | Msa0358270:intron | 40.0% | |
| AGTTAGTGTATGCTGGAAGA+TGG | - | chr3_1:43026558-43026577 | Msa0358270:intron | 40.0% | |
| TGAATCGATGGATGCATTCA+TGG | - | chr3_1:43026595-43026614 | Msa0358270:intron | 40.0% | |
| AAGATCTCACAGACTACAAC+AGG | - | chr3_1:43026620-43026639 | Msa0358270:intron | 40.0% | |
| AGGAGCAATAGCAATAGCTG+GGG | + | chr3_1:43023061-43023080 | None:intergenic | 45.0% | |
| GTAGGAGCAATAGCAATAGC+TGG | + | chr3_1:43023063-43023082 | None:intergenic | 45.0% | |
| ! | GAGGGTGCAGATAGCAAAAT+TGG | + | chr3_1:43023249-43023268 | None:intergenic | 45.0% |
| TGAATGAAGAAGGCTTTGCC+TGG | + | chr3_1:43023329-43023348 | None:intergenic | 45.0% | |
| GCAGCACCAAAACTTCTTCT+TGG | + | chr3_1:43023527-43023546 | None:intergenic | 45.0% | |
| AGCCAAACAATCTCACCTTG+AGG | + | chr3_1:43023557-43023576 | None:intergenic | 45.0% | |
| TGAAACACCAACACAGACAC+TGG | - | chr3_1:43023604-43023623 | Msa0358270:intron | 45.0% | |
| !! | ACCAGATATGTTCGGTGTCA+AGG | - | chr3_1:43023708-43023727 | Msa0358270:intron | 45.0% |
| !!! | TTTTTTAGGCCCATACCCTG+GGG | + | chr3_1:43023776-43023795 | None:intergenic | 45.0% |
| ATACACCCGCACGGTTTATT+GGG | + | chr3_1:43023820-43023839 | None:intergenic | 45.0% | |
| TATACACCCGCACGGTTTAT+TGG | + | chr3_1:43023821-43023840 | None:intergenic | 45.0% | |
| ! | TCTTGCTATATACACCCGCA+CGG | + | chr3_1:43023829-43023848 | None:intergenic | 45.0% |
| CGGGTGTATATAGCAAGAAC+TGG | - | chr3_1:43023831-43023850 | Msa0358270:intron | 45.0% | |
| ! | AATGATTTGGGCCTGTCTGT+AGG | + | chr3_1:43023886-43023905 | None:intergenic | 45.0% |
| TACAGACAGGCCCAAATCAT+TGG | - | chr3_1:43023885-43023904 | Msa0358270:CDS | 45.0% | |
| !! | TCGGTGCTGGAAGTAAAATG+AGG | + | chr3_1:43024084-43024103 | None:intergenic | 45.0% |
| TTCCTACGAATATGGAGGCT+CGG | + | chr3_1:43024103-43024122 | None:intergenic | 45.0% | |
| AGCCTCCATATTCGTAGGAA+CGG | - | chr3_1:43024103-43024122 | Msa0358270:intron | 45.0% | |
| CAAGAAGGTTGCTGGACTAA+GGG | - | chr3_1:43024245-43024264 | Msa0358270:CDS | 45.0% | |
| AAGAAGGTTGCTGGACTAAG+GGG | - | chr3_1:43024246-43024265 | Msa0358270:CDS | 45.0% | |
| !! | AAGGTTGTTCTGGCTTACAG+TGG | - | chr3_1:43024279-43024298 | Msa0358270:CDS | 45.0% |
| GTTTGCTTCACTGCTGATCT+AGG | - | chr3_1:43024446-43024465 | Msa0358270:CDS | 45.0% | |
| TAGGGTGCAAGTGAATTGGA+AGG | - | chr3_1:43024656-43024675 | Msa0358270:intron | 45.0% | |
| GAAGAGAAGGCAAAAGCTAG+TGG | - | chr3_1:43024683-43024702 | Msa0358270:intron | 45.0% | |
| TAGTGGAGCTTCTCAGTTAG+TGG | - | chr3_1:43024700-43024719 | Msa0358270:intron | 45.0% | |
| AGCTTCTCAGTTAGTGGTGA+AGG | - | chr3_1:43024706-43024725 | Msa0358270:intron | 45.0% | |
| CTGGAGTGTGGATGATTGTT+TGG | + | chr3_1:43024969-43024988 | None:intergenic | 45.0% | |
| AGCGAAATTTCACTGGAGTG+TGG | + | chr3_1:43024981-43025000 | None:intergenic | 45.0% | |
| !! | TCTACTGACTTGACAGGCTA+TGG | - | chr3_1:43025361-43025380 | Msa0358270:intron | 45.0% |
| AGCATCAGCTCCAACTTCAT+TGG | + | chr3_1:43025396-43025415 | None:intergenic | 45.0% | |
| ! | GGAGCCACAACATTTAGCTT+GGG | + | chr3_1:43025576-43025595 | None:intergenic | 45.0% |
| TGGAGCCACAACATTTAGCT+TGG | + | chr3_1:43025577-43025596 | None:intergenic | 45.0% | |
| AGCTAAATGTTGTGGCTCCA+TGG | - | chr3_1:43025577-43025596 | Msa0358270:CDS | 45.0% | |
| TAAATGTTGTGGCTCCATGG+AGG | - | chr3_1:43025580-43025599 | Msa0358270:CDS | 45.0% | |
| AAATGTTGTGGCTCCATGGA+GGG | - | chr3_1:43025581-43025600 | Msa0358270:CDS | 45.0% | |
| ATAGCAGGGATAGGAACCTT+TGG | - | chr3_1:43025688-43025707 | Msa0358270:intron | 45.0% | |
| CCTCAATGGCCCATAACTTA+TGG | + | chr3_1:43026031-43026050 | None:intergenic | 45.0% | |
| CCATAAGTTATGGGCCATTG+AGG | - | chr3_1:43026028-43026047 | Msa0358270:intron | 45.0% | |
| CTATTACGGTTAAGGCTGGT+TGG | + | chr3_1:43026102-43026121 | None:intergenic | 45.0% | |
| CAACCAGCCTTAACCGTAAT+AGG | - | chr3_1:43026100-43026119 | Msa0358270:intron | 45.0% | |
| CCTTAATCGCGGTCCTATTA+CGG | + | chr3_1:43026116-43026135 | None:intergenic | 45.0% | |
| GGCATTCCAGTATCAGTGAA+CGG | - | chr3_1:43026305-43026324 | Msa0358270:CDS | 45.0% | |
| GCATTCCAGTATCAGTGAAC+GGG | - | chr3_1:43026306-43026325 | Msa0358270:CDS | 45.0% | |
| AGCTGAATGAGATAGGTGGA+AGG | - | chr3_1:43026360-43026379 | Msa0358270:intron | 45.0% | |
| AATGAGATAGGTGGAAGGCA+TGG | - | chr3_1:43026365-43026384 | Msa0358270:intron | 45.0% | |
| ! | ATAGGTGGAAGGCATGGAAT+AGG | - | chr3_1:43026371-43026390 | Msa0358270:intron | 45.0% |
| TTGGTTGAAGACCGCATTGT+AGG | - | chr3_1:43026404-43026423 | Msa0358270:intron | 45.0% | |
| CTGGAGTTTCGTAAACTCCT+CGG | + | chr3_1:43026439-43026458 | None:intergenic | 45.0% | |
| TGATCCACTTCGTGAATCGA+TGG | - | chr3_1:43026583-43026602 | Msa0358270:intron | 45.0% | |
| CTCACAGACTACAACAGGTT+CGG | - | chr3_1:43026625-43026644 | Msa0358270:intron | 45.0% | |
| AAAGGTAGTGCTTCTGTGAC+CGG | - | chr3_1:43026665-43026684 | Msa0358270:intron | 45.0% | |
| ! | AGCTTTATGGCCTTCCAATG+AGG | - | chr3_1:43026780-43026799 | Msa0358270:CDS | 45.0% |
| !! | ATCATGGCTCTGATCCTCAT+TGG | + | chr3_1:43026797-43026816 | None:intergenic | 45.0% |
| AATGAGGATCAGAGCCATGA+TGG | - | chr3_1:43026796-43026815 | Msa0358270:CDS | 45.0% | |
| ! | ATCAGAGCCATGATGGAACA+AGG | - | chr3_1:43026803-43026822 | Msa0358270:CDS | 45.0% |
| GCTCCTACCAAACATGCAAG+AGG | - | chr3_1:43023075-43023094 | Msa0358270:CDS | 50.0% | |
| GGCACCTCTCTGAATGAAGA+AGG | + | chr3_1:43023339-43023358 | None:intergenic | 50.0% | |
| ACATGCATGCATGGATGTGC+TGG | - | chr3_1:43023374-43023393 | Msa0358270:CDS | 50.0% | |
| CATGCATGCATGGATGTGCT+GGG | - | chr3_1:43023375-43023394 | Msa0358270:CDS | 50.0% | |
| ! | GGTGCTGCAAGTAAACCTCA+AGG | - | chr3_1:43023539-43023558 | Msa0358270:CDS | 50.0% |
| GTTGTGTCCAGTGTCTGTGT+TGG | + | chr3_1:43023614-43023633 | None:intergenic | 50.0% | |
| GCCTTGACACCGAACATATC+TGG | + | chr3_1:43023712-43023731 | None:intergenic | 50.0% | |
| !! | GATATGTTCGGTGTCAAGGC+TGG | - | chr3_1:43023712-43023731 | Msa0358270:intron | 50.0% |
| !! | ACGGTTTATTGGGGGGTACT+AGG | + | chr3_1:43023810-43023829 | None:intergenic | 50.0% |
| TACACCCGCACGGTTTATTG+GGG | + | chr3_1:43023819-43023838 | None:intergenic | 50.0% | |
| ! | TCTGAGACCAAGAAGGTTGC+TGG | - | chr3_1:43024237-43024256 | Msa0358270:CDS | 50.0% |
| CCTTAGTCCAGCAACCTTCT+TGG | + | chr3_1:43024247-43024266 | None:intergenic | 50.0% | |
| CCAAGAAGGTTGCTGGACTA+AGG | - | chr3_1:43024244-43024263 | Msa0358270:CDS | 50.0% | |
| !! | GTTGTTCTGGCTTACAGTGG+TGG | - | chr3_1:43024282-43024301 | Msa0358270:CDS | 50.0% |
| ACACATCTGTTGTTGTCCCC+TGG | - | chr3_1:43024310-43024329 | Msa0358270:intron | 50.0% | |
| ! | GTGTTTCCTTGTTTGCGTGC+CGG | - | chr3_1:43024758-43024777 | Msa0358270:intron | 50.0% |
| ! | GTGCCGGTGCAATTTATGAG+AGG | - | chr3_1:43024774-43024793 | Msa0358270:intron | 50.0% |
| AGCTCGCCCTGTAATTGCAA+AGG | - | chr3_1:43024820-43024839 | Msa0358270:intron | 50.0% | |
| GAGGTAACACAAGGATAGCC+TGG | + | chr3_1:43025153-43025172 | None:intergenic | 50.0% | |
| !! | ACTGACTTGACAGGCTATGG+TGG | - | chr3_1:43025364-43025383 | Msa0358270:intron | 50.0% |
| CTGTCTCGCATGGTTGTACA+GGG | - | chr3_1:43025414-43025433 | Msa0358270:intron | 50.0% | |
| TCGCATGGTTGTACAGGGAA+AGG | - | chr3_1:43025419-43025438 | Msa0358270:intron | 50.0% | |
| GTAATATCCCACTCCCTCCA+TGG | + | chr3_1:43025597-43025616 | None:intergenic | 50.0% | |
| TGGAGGGAGTGGGATATTAC+AGG | - | chr3_1:43025597-43025616 | Msa0358270:CDS | 50.0% | |
| GGAGGGAGTGGGATATTACA+GGG | - | chr3_1:43025598-43025617 | Msa0358270:CDS | 50.0% | |
| CCTCGTGAGTTATGTGCCAA+AGG | + | chr3_1:43025707-43025726 | None:intergenic | 50.0% | |
| CCTTTGGCACATAACTCACG+AGG | - | chr3_1:43025704-43025723 | Msa0358270:intron | 50.0% | |
| TGGCACATAACTCACGAGGT+AGG | - | chr3_1:43025708-43025727 | Msa0358270:intron | 50.0% | |
| ! | CATGTTGACTGTAGACCCAG+AGG | - | chr3_1:43025936-43025955 | Msa0358270:intron | 50.0% |
| ! | CATGCTTACTCTGGCTCGTT+TGG | + | chr3_1:43025967-43025986 | None:intergenic | 50.0% |
| GGTCCTATTACGGTTAAGGC+TGG | + | chr3_1:43026106-43026125 | None:intergenic | 50.0% | |
| TCGCGGTCCTATTACGGTTA+AGG | + | chr3_1:43026110-43026129 | None:intergenic | 50.0% | |
| CCGTAATAGGACCGCGATTA+AGG | - | chr3_1:43026113-43026132 | Msa0358270:intron | 50.0% | |
| AGCTGATGCAGCCTTAATCG+CGG | + | chr3_1:43026127-43026146 | None:intergenic | 50.0% | |
| CTCTTCCCGTTCACTGATAC+TGG | + | chr3_1:43026314-43026333 | None:intergenic | 50.0% | |
| AACGGGAAGAGACTTTCTCC+AGG | - | chr3_1:43026323-43026342 | Msa0358270:intron | 50.0% | |
| GCTGAGCTGAATGAGATAGG+TGG | - | chr3_1:43026356-43026375 | Msa0358270:intron | 50.0% | |
| GGTCTTCAACCAAGTCGACA+CGG | + | chr3_1:43026397-43026416 | None:intergenic | 50.0% | |
| GGCTCTTCATGCCTACAATG+CGG | + | chr3_1:43026418-43026437 | None:intergenic | 50.0% | |
| ATTGTAGGCATGAAGAGCCG+AGG | - | chr3_1:43026419-43026438 | Msa0358270:intron | 50.0% | |
| CGAGGAGTTTACGAAACTCC+AGG | - | chr3_1:43026437-43026456 | Msa0358270:intron | 50.0% | |
| GGAGTTTACGAAACTCCAGG+TGG | - | chr3_1:43026440-43026459 | Msa0358270:intron | 50.0% | |
| !! | GTGAAAAGAATGGTGCCACC+TGG | + | chr3_1:43026458-43026477 | None:intergenic | 50.0% |
| !! | GCATCCATCGATTCACGAAG+TGG | + | chr3_1:43026590-43026609 | None:intergenic | 50.0% |
| ACTATAGGGACTCTTCCGAC+CGG | + | chr3_1:43026687-43026706 | None:intergenic | 50.0% | |
| !! | TGGCTCTGATCCTCATTGGA+AGG | + | chr3_1:43026793-43026812 | None:intergenic | 50.0% |
| ! | TAGAGCACCTGCTGCATCAC+CGG | - | chr3_1:43023298-43023317 | Msa0358270:CDS | 55.0% |
| AAGGCTTTGCCTGGCAGAAC+CGG | + | chr3_1:43023320-43023339 | None:intergenic | 55.0% | |
| GTACCCCCCAATAAACCGTG+CGG | - | chr3_1:43023811-43023830 | Msa0358270:intron | 55.0% | |
| TACCCCCCAATAAACCGTGC+GGG | - | chr3_1:43023812-43023831 | Msa0358270:intron | 55.0% | |
| ACACCCGCACGGTTTATTGG+GGG | + | chr3_1:43023818-43023837 | None:intergenic | 55.0% | |
| CACCGAGCCTCCATATTCGT+AGG | - | chr3_1:43024098-43024117 | Msa0358270:intron | 55.0% | |
| GGCCGTTCCTACGAATATGG+AGG | + | chr3_1:43024108-43024127 | None:intergenic | 55.0% | |
| CAGGGCCGTTCCTACGAATA+TGG | + | chr3_1:43024111-43024130 | None:intergenic | 55.0% | |
| TTCGTAGGAACGGCCCTGTT+CGG | - | chr3_1:43024113-43024132 | Msa0358270:intron | 55.0% | |
| ! | ATTGCACCGGCACGCAAACA+AGG | + | chr3_1:43024767-43024786 | None:intergenic | 55.0% |
| GCTTTAATTGCAGCCCACGC+CGG | - | chr3_1:43024998-43025017 | Msa0358270:intron | 55.0% | |
| CAACCCTACATAACCGGCGT+GGG | + | chr3_1:43025014-43025033 | None:intergenic | 55.0% | |
| TCAACCCTACATAACCGGCG+TGG | + | chr3_1:43025015-43025034 | None:intergenic | 55.0% | |
| GCTGTCTCGCATGGTTGTAC+AGG | - | chr3_1:43025413-43025432 | Msa0358270:intron | 55.0% | |
| ! | GCTCGTTTGGAGCATCCTCT+GGG | + | chr3_1:43025954-43025973 | None:intergenic | 55.0% |
| !! | TGGAATAGGCCGTGTCGACT+TGG | - | chr3_1:43026385-43026404 | Msa0358270:intron | 55.0% |
| GTAGTGCTTCTGTGACCGGT+CGG | - | chr3_1:43026669-43026688 | Msa0358270:intron | 55.0% | |
| ! | TATAGCACCGAGCCTCCCCA+GGG | - | chr3_1:43023758-43023777 | Msa0358270:intron | 60.0% |
| TTTAGGCCCATACCCTGGGG+AGG | + | chr3_1:43023773-43023792 | None:intergenic | 60.0% | |
| CACCCGCACGGTTTATTGGG+GGG | + | chr3_1:43023817-43023836 | None:intergenic | 60.0% | |
| !! | CGAATATGGAGGCTCGGTGC+TGG | + | chr3_1:43024097-43024116 | None:intergenic | 60.0% |
| CTGTTGTTGTCCCCTGGCTG+AGG | - | chr3_1:43024316-43024335 | Msa0358270:intron | 60.0% | |
| ! | CAGCCCACGCCGGTTATGTA+GGG | - | chr3_1:43025008-43025027 | Msa0358270:CDS | 60.0% |
| GGAGCTGATGCTGTCTCGCA+TGG | - | chr3_1:43025404-43025423 | Msa0358270:intron | 60.0% | |
| TTGTGGCTCCATGGAGGGAG+TGG | - | chr3_1:43025586-43025605 | Msa0358270:CDS | 60.0% | |
| TGTGGCTCCATGGAGGGAGT+GGG | - | chr3_1:43025587-43025606 | Msa0358270:CDS | 60.0% | |
| ! | GGCTCGTTTGGAGCATCCTC+TGG | + | chr3_1:43025955-43025974 | None:intergenic | 60.0% |
| GGCAGAACCGGTGATGCAGC+AGG | + | chr3_1:43023308-43023327 | None:intergenic | 65.0% | |
| !! | GCTGCATCACCGGTTCTGCC+AGG | - | chr3_1:43023308-43023327 | Msa0358270:CDS | 65.0% |
| !! | TCGGTGTCAAGGCTGGACCC+TGG | - | chr3_1:43023719-43023738 | Msa0358270:intron | 65.0% |
| ! | CGGTGTCAAGGCTGGACCCT+GGG | - | chr3_1:43023720-43023739 | Msa0358270:intron | 65.0% |
| GGTGTCAAGGCTGGACCCTG+GGG | - | chr3_1:43023721-43023740 | Msa0358270:intron | 65.0% | |
| GTGTCAAGGCTGGACCCTGG+GGG | - | chr3_1:43023722-43023741 | Msa0358270:intron | 65.0% | |
| TGTCAAGGCTGGACCCTGGG+GGG | - | chr3_1:43023723-43023742 | Msa0358270:intron | 65.0% | |
| ! | CTATAGCACCGAGCCTCCCC+AGG | - | chr3_1:43023757-43023776 | Msa0358270:intron | 65.0% |
| ACCGAGCCTCCCCAGGGTAT+GGG | - | chr3_1:43023764-43023783 | Msa0358270:intron | 65.0% | |
| ! | GCAGCCCACGCCGGTTATGT+AGG | - | chr3_1:43025007-43025026 | Msa0358270:CDS | 65.0% |
| AGCGCTGCTTGCACCCCCCA+GGG | + | chr3_1:43023739-43023758 | None:intergenic | 70.0% | |
| TAGCGCTGCTTGCACCCCCC+AGG | + | chr3_1:43023740-43023759 | None:intergenic | 70.0% | |
| CACCGAGCCTCCCCAGGGTA+TGG | - | chr3_1:43023763-43023782 | Msa0358270:intron | 70.0% | |
| GCCCATACCCTGGGGAGGCT+CGG | + | chr3_1:43023768-43023787 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 43022910 | 43026936 | 43022910 | ID=Msa0358270;Name=Msa0358270 |
| chr3_1 | mRNA | 43022910 | 43026936 | 43022910 | ID=Msa0358270-mRNA-1;Parent=Msa0358270;Name=Msa0358270-mRNA-1;_AED=0.29;_eAED=0.29;_QI=114|1|1|1|1|1|10|104|479 |
| chr3_1 | exon | 43022910 | 43023566 | 43022910 | ID=Msa0358270-mRNA-1:exon:7565;Parent=Msa0358270-mRNA-1 |
| chr3_1 | exon | 43023869 | 43023957 | 43023869 | ID=Msa0358270-mRNA-1:exon:7564;Parent=Msa0358270-mRNA-1 |
| chr3_1 | exon | 43024121 | 43024306 | 43024121 | ID=Msa0358270-mRNA-1:exon:7563;Parent=Msa0358270-mRNA-1 |
| chr3_1 | exon | 43024395 | 43024469 | 43024395 | ID=Msa0358270-mRNA-1:exon:7562;Parent=Msa0358270-mRNA-1 |
| chr3_1 | exon | 43025005 | 43025187 | 43025005 | ID=Msa0358270-mRNA-1:exon:7561;Parent=Msa0358270-mRNA-1 |
| chr3_1 | exon | 43025374 | 43025422 | 43025374 | ID=Msa0358270-mRNA-1:exon:7560;Parent=Msa0358270-mRNA-1 |
| chr3_1 | exon | 43025509 | 43025644 | 43025509 | ID=Msa0358270-mRNA-1:exon:7559;Parent=Msa0358270-mRNA-1 |
| chr3_1 | exon | 43026286 | 43026328 | 43026286 | ID=Msa0358270-mRNA-1:exon:7558;Parent=Msa0358270-mRNA-1 |
| chr3_1 | exon | 43026493 | 43026545 | 43026493 | ID=Msa0358270-mRNA-1:exon:7557;Parent=Msa0358270-mRNA-1 |
| chr3_1 | exon | 43026750 | 43026936 | 43026750 | ID=Msa0358270-mRNA-1:exon:7556;Parent=Msa0358270-mRNA-1 |
| chr3_1 | five_prime_UTR | 43026823 | 43026936 | 43026823 | ID=Msa0358270-mRNA-1:five_prime_utr;Parent=Msa0358270-mRNA-1 |
| chr3_1 | CDS | 43026750 | 43026822 | 43026750 | ID=Msa0358270-mRNA-1:cds;Parent=Msa0358270-mRNA-1 |
| chr3_1 | CDS | 43026493 | 43026545 | 43026493 | ID=Msa0358270-mRNA-1:cds;Parent=Msa0358270-mRNA-1 |
| chr3_1 | CDS | 43026286 | 43026328 | 43026286 | ID=Msa0358270-mRNA-1:cds;Parent=Msa0358270-mRNA-1 |
| chr3_1 | CDS | 43025509 | 43025644 | 43025509 | ID=Msa0358270-mRNA-1:cds;Parent=Msa0358270-mRNA-1 |
| chr3_1 | CDS | 43025374 | 43025422 | 43025374 | ID=Msa0358270-mRNA-1:cds;Parent=Msa0358270-mRNA-1 |
| chr3_1 | CDS | 43025005 | 43025187 | 43025005 | ID=Msa0358270-mRNA-1:cds;Parent=Msa0358270-mRNA-1 |
| chr3_1 | CDS | 43024395 | 43024469 | 43024395 | ID=Msa0358270-mRNA-1:cds;Parent=Msa0358270-mRNA-1 |
| chr3_1 | CDS | 43024121 | 43024306 | 43024121 | ID=Msa0358270-mRNA-1:cds;Parent=Msa0358270-mRNA-1 |
| chr3_1 | CDS | 43023869 | 43023957 | 43023869 | ID=Msa0358270-mRNA-1:cds;Parent=Msa0358270-mRNA-1 |
| chr3_1 | CDS | 43023014 | 43023566 | 43023014 | ID=Msa0358270-mRNA-1:cds;Parent=Msa0358270-mRNA-1 |
| chr3_1 | three_prime_UTR | 43022910 | 43023013 | 43022910 | ID=Msa0358270-mRNA-1:three_prime_utr;Parent=Msa0358270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
