Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0367070 | KEH34515.1 | 59.925 | 267 | 54 | 5 | 5 | 219 | 52 | 317 | 1.87e-88 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0367070 | A0A072V8K3 | 59.925 | 267 | 54 | 5 | 5 | 219 | 52 | 317 | 8.91e-89 | 273 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0367070 | Msa1438250 | 0.800824 | 1.202228e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0367070 | MtrunA17_Chr3g0107931 | 62.762 | 239 | 40 | 3 | 19 | 208 | 1227 | 1465 | 3.28e-82 | 266 |
| Msa0367070 | MtrunA17_Chr3g0107271 | 56.299 | 254 | 56 | 6 | 16 | 220 | 2 | 249 | 1.89e-81 | 243 |
| Msa0367070 | MtrunA17_Chr3g0108111 | 56.198 | 242 | 57 | 3 | 18 | 210 | 149 | 390 | 1.43e-75 | 239 |
| Msa0367070 | MtrunA17_Chr3g0108151 | 56.790 | 243 | 54 | 4 | 22 | 213 | 975 | 1217 | 4.62e-75 | 246 |
| Msa0367070 | MtrunA17_Chr3g0108821 | 55.085 | 236 | 56 | 5 | 25 | 212 | 1204 | 1437 | 7.86e-69 | 228 |
| Msa0367070 | MtrunA17_Chr3g0091861 | 52.245 | 245 | 63 | 3 | 22 | 212 | 1152 | 1396 | 1.83e-68 | 227 |
| Msa0367070 | MtrunA17_Chr3g0108071 | 50.391 | 256 | 73 | 4 | 15 | 220 | 345 | 596 | 3.04e-67 | 222 |
| Msa0367070 | MtrunA17_Chr3g0108171 | 69.811 | 159 | 42 | 1 | 68 | 220 | 1218 | 1376 | 2.73e-65 | 218 |
| Msa0367070 | MtrunA17_Chr3g0108011 | 54.626 | 227 | 45 | 3 | 25 | 208 | 1242 | 1453 | 3.75e-64 | 215 |
| Msa0367070 | MtrunA17_Chr3g0108811 | 68.553 | 159 | 41 | 3 | 64 | 213 | 1418 | 1576 | 1.43e-61 | 207 |
| Msa0367070 | MtrunA17_Chr3g0108811 | 47.305 | 167 | 42 | 3 | 25 | 147 | 1225 | 1389 | 5.12e-36 | 134 |
| Msa0367070 | MtrunA17_Chr3g0097601 | 47.581 | 248 | 70 | 5 | 22 | 215 | 9 | 250 | 6.41e-60 | 189 |
| Msa0367070 | MtrunA17_Chr2g0288311 | 63.291 | 158 | 32 | 3 | 67 | 220 | 43 | 178 | 2.31e-56 | 177 |
| Msa0367070 | MtrunA17_Chr3g0107081 | 47.826 | 207 | 86 | 6 | 22 | 220 | 12 | 204 | 9.20e-55 | 174 |
| Msa0367070 | MtrunA17_Chr3g0096701 | 60.690 | 145 | 51 | 1 | 66 | 204 | 63 | 207 | 5.50e-50 | 173 |
| Msa0367070 | MtrunA17_Chr3g0108091 | 64.885 | 131 | 39 | 1 | 97 | 220 | 3 | 133 | 8.79e-50 | 169 |
| Msa0367070 | MtrunA17_Chr3g0105481 | 56.494 | 154 | 57 | 3 | 67 | 211 | 1115 | 1267 | 7.25e-49 | 171 |
| Msa0367070 | MtrunA17_Chr3g0105601 | 52.174 | 161 | 65 | 3 | 68 | 219 | 322 | 479 | 3.25e-45 | 157 |
| Msa0367070 | MtrunA17_Chr3g0105551 | 44.976 | 209 | 63 | 3 | 50 | 206 | 1141 | 1349 | 2.03e-44 | 158 |
| Msa0367070 | MtrunA17_Chr3g0105521 | 56.338 | 142 | 53 | 2 | 68 | 200 | 1084 | 1225 | 8.12e-42 | 150 |
| Msa0367070 | MtrunA17_Chr3g0105501 | 56.391 | 133 | 50 | 3 | 67 | 195 | 54 | 182 | 9.15e-40 | 135 |
| Msa0367070 | MtrunA17_Chr3g0096801 | 65.517 | 87 | 30 | 0 | 114 | 200 | 2 | 88 | 2.77e-34 | 119 |
| Msa0367070 | MtrunA17_Chr3g0107201 | 61.321 | 106 | 30 | 2 | 114 | 209 | 2 | 106 | 1.16e-30 | 118 |
| Msa0367070 | MtrunA17_Chr1g0160951 | 28.235 | 255 | 125 | 7 | 21 | 219 | 998 | 1250 | 3.57e-23 | 97.4 |
| Msa0367070 | MtrunA17_Chr3g0100241 | 36.885 | 122 | 69 | 3 | 68 | 181 | 69 | 190 | 2.41e-17 | 77.4 |
| Msa0367070 | MtrunA17_Chr5g0439121 | 33.333 | 150 | 90 | 5 | 68 | 207 | 1376 | 1525 | 1.77e-16 | 77.8 |
| Msa0367070 | MtrunA17_Chr3g0100261 | 36.290 | 124 | 69 | 3 | 68 | 181 | 1085 | 1208 | 6.57e-16 | 76.3 |
| Msa0367070 | MtrunA17_Chr8g0360991 | 30.534 | 131 | 74 | 2 | 68 | 196 | 1079 | 1194 | 2.83e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 26 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGAACAGGAAATGAATTT+AGG | 0.211262 | 3_1:-62586714 | Msa0367070:CDS |
| AATACTACAAATTGTAGATT+TGG | 0.253439 | 3_1:+62586334 | None:intergenic |
| GCATATTATTGAAGATGATT+TGG | 0.296423 | 3_1:-62586551 | Msa0367070:CDS |
| CTCAGGAAGCTCTTTACATA+TGG | 0.356714 | 3_1:+62586438 | None:intergenic |
| ACAACAAGTATGTTTAACTT+TGG | 0.362700 | 3_1:+62586499 | None:intergenic |
| CAACAAGTATGTTTAACTTT+GGG | 0.367815 | 3_1:+62586500 | None:intergenic |
| TATCACTTTGAAAAGACTTC+AGG | 0.379137 | 3_1:-62586781 | Msa0367070:CDS |
| CTTTGGGAAGCATGTCTTTG+AGG | 0.405904 | 3_1:+62586516 | None:intergenic |
| GATAAGAGAAGCAGATGAGT+TGG | 0.410082 | 3_1:-62586401 | Msa0367070:CDS |
| TCTCAATGAAATCAATGAAC+AGG | 0.412162 | 3_1:-62586727 | Msa0367070:CDS |
| AGCTCTTTACATATGGAGAT+TGG | 0.415026 | 3_1:+62586445 | None:intergenic |
| CAGTTTGAAAATGAATTCTC+TGG | 0.417455 | 3_1:+62586284 | None:intergenic |
| TTTGGGAAGCATGTCTTTGA+GGG | 0.418532 | 3_1:+62586517 | None:intergenic |
| TTTCTGTGCAGGAATTGATT+GGG | 0.458993 | 3_1:-62586818 | Msa0367070:intron |
| GAATTGTCAAACACTATCTC+TGG | 0.469868 | 3_1:-62586242 | Msa0367070:CDS |
| ATCACTAGACACTTTAGCTC+AGG | 0.476998 | 3_1:+62586421 | None:intergenic |
| CTCTGGACATGACTGAGGCT+TGG | 0.501155 | 3_1:+62586301 | None:intergenic |
| AAGAACAATAGATCTTGATC+AGG | 0.506672 | 3_1:-62587275 | Msa0367070:CDS |
| GATGAAATATTTGCAAATGA+AGG | 0.527514 | 3_1:-62586379 | Msa0367070:CDS |
| AGATCTTGATCAGGAAACTT+CGG | 0.543596 | 3_1:-62587266 | Msa0367070:CDS |
| GATCGTTTAGAGTTTGGCTA+CGG | 0.557476 | 3_1:-62586184 | Msa0367070:CDS |
| GCAGGAATTGATTGGGAATG+TGG | 0.595247 | 3_1:-62586811 | Msa0367070:intron |
| GAATTCTCTGGACATGACTG+AGG | 0.634620 | 3_1:+62586296 | None:intergenic |
| ATTCTCATATAAAGCAACTG+TGG | 0.637426 | 3_1:+62586595 | None:intergenic |
| TGAAGGTGATGATCACAAAG+TGG | 0.652737 | 3_1:-62586362 | Msa0367070:CDS |
| TTCGGAAAGCAGAATCGAAG+CGG | 0.677128 | 3_1:-62587248 | Msa0367070:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATCTATTACTTTTATTAA+AGG | - | chr3_1:62586475-62586494 | Msa0367070:CDS | 10.0% |
| !!! | AATCTATTACTTTTATTAAA+GGG | - | chr3_1:62586476-62586495 | Msa0367070:CDS | 10.0% |
| !!! | TAATCTATTACTTTTATTAA+AGG | - | chr3_1:62586475-62586494 | Msa0367070:CDS | 10.0% |
| !!! | AATCTATTACTTTTATTAAA+GGG | - | chr3_1:62586476-62586495 | Msa0367070:CDS | 10.0% |
| !! | ATTCATTGTAATAAATCATT+TGG | + | chr3_1:62586293-62586312 | None:intergenic | 15.0% |
| !!! | GTTAAAGTTTTTAAATGATT+TGG | - | chr3_1:62586345-62586364 | Msa0367070:CDS | 15.0% |
| !!! | ACTTTGTTATTCTTATTTTA+TGG | - | chr3_1:62586589-62586608 | Msa0367070:CDS | 15.0% |
| !!! | ATTTTCAATTTTTCACAAAA+AGG | + | chr3_1:62586802-62586821 | None:intergenic | 15.0% |
| !! | ATTCATTGTAATAAATCATT+TGG | + | chr3_1:62586293-62586312 | None:intergenic | 15.0% |
| !!! | GTTAAAGTTTTTAAATGATT+TGG | - | chr3_1:62586345-62586364 | Msa0367070:CDS | 15.0% |
| !!! | ACTTTGTTATTCTTATTTTA+TGG | - | chr3_1:62586589-62586608 | Msa0367070:CDS | 15.0% |
| !!! | ATTTTCAATTTTTCACAAAA+AGG | + | chr3_1:62586802-62586821 | None:intergenic | 15.0% |
| !! | AATACTACAAATTGTAGATT+TGG | + | chr3_1:62587117-62587136 | None:intergenic | 20.0% |
| !! | AATACTACAAATTGTAGATT+TGG | + | chr3_1:62587117-62587136 | None:intergenic | 20.0% |
| ! | AAAATTAGACAGATGTTCAA+GGG | + | chr3_1:62586442-62586461 | None:intergenic | 25.0% |
| ! | TAAAATTAGACAGATGTTCA+AGG | + | chr3_1:62586443-62586462 | None:intergenic | 25.0% |
| !!! | TTACTTTTATTAAAGGGTAG+CGG | - | chr3_1:62586482-62586501 | Msa0367070:CDS | 25.0% |
| ! | AATGAACAGGAAATGAATTT+AGG | - | chr3_1:62586734-62586753 | Msa0367070:CDS | 25.0% |
| !! | TTTTCTCCACTTCTATTATA+AGG | - | chr3_1:62586824-62586843 | Msa0367070:intron | 25.0% |
| ! | GCATATTATTGAAGATGATT+TGG | - | chr3_1:62586897-62586916 | Msa0367070:intron | 25.0% |
| !! | CAACAAGTATGTTTAACTTT+GGG | + | chr3_1:62586951-62586970 | None:intergenic | 25.0% |
| !! | ACAACAAGTATGTTTAACTT+TGG | + | chr3_1:62586952-62586971 | None:intergenic | 25.0% |
| ! | GATGAAATATTTGCAAATGA+AGG | - | chr3_1:62587069-62587088 | Msa0367070:intron | 25.0% |
| ! | AAAATTAGACAGATGTTCAA+GGG | + | chr3_1:62586442-62586461 | None:intergenic | 25.0% |
| ! | TAAAATTAGACAGATGTTCA+AGG | + | chr3_1:62586443-62586462 | None:intergenic | 25.0% |
| !!! | TTACTTTTATTAAAGGGTAG+CGG | - | chr3_1:62586482-62586501 | Msa0367070:CDS | 25.0% |
| ! | AATGAACAGGAAATGAATTT+AGG | - | chr3_1:62586734-62586753 | Msa0367070:CDS | 25.0% |
| !! | TTTTCTCCACTTCTATTATA+AGG | - | chr3_1:62586824-62586843 | Msa0367070:intron | 25.0% |
| ! | GCATATTATTGAAGATGATT+TGG | - | chr3_1:62586897-62586916 | Msa0367070:intron | 25.0% |
| !! | CAACAAGTATGTTTAACTTT+GGG | + | chr3_1:62586951-62586970 | None:intergenic | 25.0% |
| !! | ACAACAAGTATGTTTAACTT+TGG | + | chr3_1:62586952-62586971 | None:intergenic | 25.0% |
| ! | GATGAAATATTTGCAAATGA+AGG | - | chr3_1:62587069-62587088 | Msa0367070:intron | 25.0% |
| AAGAACAATAGATCTTGATC+AGG | - | chr3_1:62586173-62586192 | Msa0367070:CDS | 30.0% | |
| GCATAAATACTTTGATGGAA+TGG | + | chr3_1:62586244-62586263 | None:intergenic | 30.0% | |
| ATGCTAGTAGCTACTATATA+TGG | + | chr3_1:62586375-62586394 | None:intergenic | 30.0% | |
| ATAGTAGCTACTAGCATTTA+AGG | - | chr3_1:62586378-62586397 | Msa0367070:CDS | 30.0% | |
| TAGTAGCTACTAGCATTTAA+GGG | - | chr3_1:62586379-62586398 | Msa0367070:CDS | 30.0% | |
| ! | TATCACTTTGAAAAGACTTC+AGG | - | chr3_1:62586667-62586686 | Msa0367070:intron | 30.0% |
| TCTCAATGAAATCAATGAAC+AGG | - | chr3_1:62586721-62586740 | Msa0367070:CDS | 30.0% | |
| TAGACACCTTATAATAGAAG+TGG | + | chr3_1:62586833-62586852 | None:intergenic | 30.0% | |
| ATTCTCATATAAAGCAACTG+TGG | + | chr3_1:62586856-62586875 | None:intergenic | 30.0% | |
| CAGTTTGAAAATGAATTCTC+TGG | + | chr3_1:62587167-62587186 | None:intergenic | 30.0% | |
| ! | AACGATCAAAATCATTTTCG+AGG | + | chr3_1:62587251-62587270 | None:intergenic | 30.0% |
| !! | GATTTTGATCGTTTAGAGTT+TGG | - | chr3_1:62587258-62587277 | Msa0367070:CDS | 30.0% |
| AAGAACAATAGATCTTGATC+AGG | - | chr3_1:62586173-62586192 | Msa0367070:CDS | 30.0% | |
| GCATAAATACTTTGATGGAA+TGG | + | chr3_1:62586244-62586263 | None:intergenic | 30.0% | |
| ATGCTAGTAGCTACTATATA+TGG | + | chr3_1:62586375-62586394 | None:intergenic | 30.0% | |
| ATAGTAGCTACTAGCATTTA+AGG | - | chr3_1:62586378-62586397 | Msa0367070:CDS | 30.0% | |
| TAGTAGCTACTAGCATTTAA+GGG | - | chr3_1:62586379-62586398 | Msa0367070:CDS | 30.0% | |
| ! | TATCACTTTGAAAAGACTTC+AGG | - | chr3_1:62586667-62586686 | Msa0367070:intron | 30.0% |
| TCTCAATGAAATCAATGAAC+AGG | - | chr3_1:62586721-62586740 | Msa0367070:CDS | 30.0% | |
| TAGACACCTTATAATAGAAG+TGG | + | chr3_1:62586833-62586852 | None:intergenic | 30.0% | |
| ATTCTCATATAAAGCAACTG+TGG | + | chr3_1:62586856-62586875 | None:intergenic | 30.0% | |
| CAGTTTGAAAATGAATTCTC+TGG | + | chr3_1:62587167-62587186 | None:intergenic | 30.0% | |
| ! | AACGATCAAAATCATTTTCG+AGG | + | chr3_1:62587251-62587270 | None:intergenic | 30.0% |
| !! | GATTTTGATCGTTTAGAGTT+TGG | - | chr3_1:62587258-62587277 | Msa0367070:CDS | 30.0% |
| AGATCTTGATCAGGAAACTT+CGG | - | chr3_1:62586182-62586201 | Msa0367070:CDS | 35.0% | |
| !! | TGATGGAATGGTGTCATATT+AGG | + | chr3_1:62586232-62586251 | None:intergenic | 35.0% |
| GTGCAGCATAAATACTTTGA+TGG | + | chr3_1:62586249-62586268 | None:intergenic | 35.0% | |
| AATTGAGATGGCAAAAAACG+TGG | + | chr3_1:62586558-62586577 | None:intergenic | 35.0% | |
| TCCTTTAAGTGCAATTGAGA+TGG | + | chr3_1:62586570-62586589 | None:intergenic | 35.0% | |
| ATCAATTCCTGCACAGAAAA+GGG | + | chr3_1:62586629-62586648 | None:intergenic | 35.0% | |
| AATCAATTCCTGCACAGAAA+AGG | + | chr3_1:62586630-62586649 | None:intergenic | 35.0% | |
| ! | TTTTCTGTGCAGGAATTGAT+TGG | - | chr3_1:62586629-62586648 | Msa0367070:intron | 35.0% |
| TTTCTGTGCAGGAATTGATT+GGG | - | chr3_1:62586630-62586649 | Msa0367070:intron | 35.0% | |
| ! | ACAAAAAGGCATGTCATCAT+AGG | + | chr3_1:62586788-62586807 | None:intergenic | 35.0% |
| AGCTCTTTACATATGGAGAT+TGG | + | chr3_1:62587006-62587025 | None:intergenic | 35.0% | |
| GAATTGTCAAACACTATCTC+TGG | - | chr3_1:62587206-62587225 | Msa0367070:intron | 35.0% | |
| AGATCTTGATCAGGAAACTT+CGG | - | chr3_1:62586182-62586201 | Msa0367070:CDS | 35.0% | |
| !! | TGATGGAATGGTGTCATATT+AGG | + | chr3_1:62586232-62586251 | None:intergenic | 35.0% |
| GTGCAGCATAAATACTTTGA+TGG | + | chr3_1:62586249-62586268 | None:intergenic | 35.0% | |
| AATTGAGATGGCAAAAAACG+TGG | + | chr3_1:62586558-62586577 | None:intergenic | 35.0% | |
| TCCTTTAAGTGCAATTGAGA+TGG | + | chr3_1:62586570-62586589 | None:intergenic | 35.0% | |
| ATCAATTCCTGCACAGAAAA+GGG | + | chr3_1:62586629-62586648 | None:intergenic | 35.0% | |
| AATCAATTCCTGCACAGAAA+AGG | + | chr3_1:62586630-62586649 | None:intergenic | 35.0% | |
| ! | TTTTCTGTGCAGGAATTGAT+TGG | - | chr3_1:62586629-62586648 | Msa0367070:intron | 35.0% |
| TTTCTGTGCAGGAATTGATT+GGG | - | chr3_1:62586630-62586649 | Msa0367070:intron | 35.0% | |
| ! | ACAAAAAGGCATGTCATCAT+AGG | + | chr3_1:62586788-62586807 | None:intergenic | 35.0% |
| AGCTCTTTACATATGGAGAT+TGG | + | chr3_1:62587006-62587025 | None:intergenic | 35.0% | |
| GAATTGTCAAACACTATCTC+TGG | - | chr3_1:62587206-62587225 | Msa0367070:intron | 35.0% | |
| TAGCTACTAGCATTTAAGGG+AGG | - | chr3_1:62586382-62586401 | Msa0367070:CDS | 40.0% | |
| AGCTACTAGCATTTAAGGGA+GGG | - | chr3_1:62586383-62586402 | Msa0367070:CDS | 40.0% | |
| ! | TTAAAGGGTAGCGGTAAAAG+AGG | - | chr3_1:62586491-62586510 | Msa0367070:CDS | 40.0% |
| GCCATCTCAATTGCACTTAA+AGG | - | chr3_1:62586566-62586585 | Msa0367070:CDS | 40.0% | |
| TCAATTCCTGCACAGAAAAG+GGG | + | chr3_1:62586628-62586647 | None:intergenic | 40.0% | |
| ! | TTTGGGAAGCATGTCTTTGA+GGG | + | chr3_1:62586934-62586953 | None:intergenic | 40.0% |
| CTCAGGAAGCTCTTTACATA+TGG | + | chr3_1:62587013-62587032 | None:intergenic | 40.0% | |
| ! | ATCACTAGACACTTTAGCTC+AGG | + | chr3_1:62587030-62587049 | None:intergenic | 40.0% |
| GATAAGAGAAGCAGATGAGT+TGG | - | chr3_1:62587047-62587066 | Msa0367070:intron | 40.0% | |
| TGAAGGTGATGATCACAAAG+TGG | - | chr3_1:62587086-62587105 | Msa0367070:intron | 40.0% | |
| ! | GATCGTTTAGAGTTTGGCTA+CGG | - | chr3_1:62587264-62587283 | Msa0367070:CDS | 40.0% |
| TAGCTACTAGCATTTAAGGG+AGG | - | chr3_1:62586382-62586401 | Msa0367070:CDS | 40.0% | |
| AGCTACTAGCATTTAAGGGA+GGG | - | chr3_1:62586383-62586402 | Msa0367070:CDS | 40.0% | |
| ! | TTAAAGGGTAGCGGTAAAAG+AGG | - | chr3_1:62586491-62586510 | Msa0367070:CDS | 40.0% |
| GCCATCTCAATTGCACTTAA+AGG | - | chr3_1:62586566-62586585 | Msa0367070:CDS | 40.0% | |
| TCAATTCCTGCACAGAAAAG+GGG | + | chr3_1:62586628-62586647 | None:intergenic | 40.0% | |
| ! | TTTGGGAAGCATGTCTTTGA+GGG | + | chr3_1:62586934-62586953 | None:intergenic | 40.0% |
| CTCAGGAAGCTCTTTACATA+TGG | + | chr3_1:62587013-62587032 | None:intergenic | 40.0% | |
| ! | ATCACTAGACACTTTAGCTC+AGG | + | chr3_1:62587030-62587049 | None:intergenic | 40.0% |
| GATAAGAGAAGCAGATGAGT+TGG | - | chr3_1:62587047-62587066 | Msa0367070:intron | 40.0% | |
| TGAAGGTGATGATCACAAAG+TGG | - | chr3_1:62587086-62587105 | Msa0367070:intron | 40.0% | |
| ! | GATCGTTTAGAGTTTGGCTA+CGG | - | chr3_1:62587264-62587283 | Msa0367070:CDS | 40.0% |
| TTCGGAAAGCAGAATCGAAG+CGG | - | chr3_1:62586200-62586219 | Msa0367070:CDS | 45.0% | |
| ! | TATTTCCCCCTTTTCTGTGC+AGG | - | chr3_1:62586619-62586638 | Msa0367070:intron | 45.0% |
| CAATTCCTGCACAGAAAAGG+GGG | + | chr3_1:62586627-62586646 | None:intergenic | 45.0% | |
| GCAGGAATTGATTGGGAATG+TGG | - | chr3_1:62586637-62586656 | Msa0367070:intron | 45.0% | |
| ! | CTTTGGGAAGCATGTCTTTG+AGG | + | chr3_1:62586935-62586954 | None:intergenic | 45.0% |
| GAATTCTCTGGACATGACTG+AGG | + | chr3_1:62587155-62587174 | None:intergenic | 45.0% | |
| TTCGGAAAGCAGAATCGAAG+CGG | - | chr3_1:62586200-62586219 | Msa0367070:CDS | 45.0% | |
| ! | TATTTCCCCCTTTTCTGTGC+AGG | - | chr3_1:62586619-62586638 | Msa0367070:intron | 45.0% |
| CAATTCCTGCACAGAAAAGG+GGG | + | chr3_1:62586627-62586646 | None:intergenic | 45.0% | |
| GCAGGAATTGATTGGGAATG+TGG | - | chr3_1:62586637-62586656 | Msa0367070:intron | 45.0% | |
| ! | CTTTGGGAAGCATGTCTTTG+AGG | + | chr3_1:62586935-62586954 | None:intergenic | 45.0% |
| GAATTCTCTGGACATGACTG+AGG | + | chr3_1:62587155-62587174 | None:intergenic | 45.0% | |
| !! | GGGAGGGTGCTCAAGTACTT+TGG | - | chr3_1:62586399-62586418 | Msa0367070:CDS | 55.0% |
| CTCTGGACATGACTGAGGCT+TGG | + | chr3_1:62587150-62587169 | None:intergenic | 55.0% | |
| !! | GGGAGGGTGCTCAAGTACTT+TGG | - | chr3_1:62586399-62586418 | Msa0367070:CDS | 55.0% |
| CTCTGGACATGACTGAGGCT+TGG | + | chr3_1:62587150-62587169 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 62586159 | 62587311 | 62586159 | ID=Msa0367070;Name=Msa0367070 |
| chr3_1 | mRNA | 62586159 | 62587311 | 62586159 | ID=Msa0367070-mRNA-1;Parent=Msa0367070;Name=Msa0367070-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|0.66|1|1|3|0|220 |
| chr3_1 | exon | 62587249 | 62587311 | 62587249 | ID=Msa0367070-mRNA-1:exon:12202;Parent=Msa0367070-mRNA-1 |
| chr3_1 | exon | 62586696 | 62586829 | 62586696 | ID=Msa0367070-mRNA-1:exon:12201;Parent=Msa0367070-mRNA-1 |
| chr3_1 | exon | 62586159 | 62586624 | 62586159 | ID=Msa0367070-mRNA-1:exon:12200;Parent=Msa0367070-mRNA-1 |
| chr3_1 | CDS | 62587249 | 62587311 | 62587249 | ID=Msa0367070-mRNA-1:cds;Parent=Msa0367070-mRNA-1 |
| chr3_1 | CDS | 62586696 | 62586829 | 62586696 | ID=Msa0367070-mRNA-1:cds;Parent=Msa0367070-mRNA-1 |
| chr3_1 | CDS | 62586159 | 62586624 | 62586159 | ID=Msa0367070-mRNA-1:cds;Parent=Msa0367070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
