AlfalfaGEDB | Msa0367160

M. sativa cultivar zhongmu-4 / Msa0367160

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF08263.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0367160	XP_039687285.1	97.692	650	14	1	1	649	16	665	0.0	1297

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0367160	sp\|Q9LVM0\|Y5830_ARATH	67.341	643	195	4	12	647	19	653	0.0	864

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0367160	A0A072UZH3	97.692	650	14	1	1	649	1	650	0.0	1297

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0367160	Msa0506550	0.983915	4.571774e-159	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0367160	MtrunA17_Chr3g0108301	97.692	650	14	1	1	649	1	650	1297
Msa0367160	MtrunA17_Chr5g0432851	77.691	641	136	4	9	649	18	651	980
Msa0367160	MtrunA17_Chr3g0128551	61.389	619	230	4	33	649	24	635	766
Msa0367160	MtrunA17_Chr7g0245171	60.591	609	225	5	24	628	12	609	716
Msa0367160	MtrunA17_Chr5g0428541	57.800	609	222	7	23	627	12	589	671
Msa0367160	MtrunA17_Chr8g0387791	52.244	624	271	11	23	637	3	608	631
Msa0367160	MtrunA17_Chr3g0126271	50.709	635	275	10	23	649	7	611	607
Msa0367160	MtrunA17_Chr4g0062911	52.698	630	260	11	41	649	30	642	594
Msa0367160	MtrunA17_Chr5g0396941	49.595	617	263	9	24	637	13	584	575
Msa0367160	MtrunA17_Chr1g0159161	48.710	620	257	10	22	637	6	568	560

Showing 1 to 10 of 848 entries

Previous1 2 3 4 5…85Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0367160	AT5G58300.3	67.341	643	195	4	12	647	19	653	0.0	864
Msa0367160	AT5G58300.1	67.341	643	195	4	12	647	19	653	0.0	864
Msa0367160	AT5G58300.2	67.341	643	195	4	12	647	19	653	0.0	864
Msa0367160	AT3G08680.1	60.372	646	225	10	21	646	6	640	0.0	750
Msa0367160	AT3G08680.2	60.372	646	225	10	21	646	6	640	0.0	750
Msa0367160	AT5G05160.1	56.761	636	245	13	20	637	10	633	0.0	693
Msa0367160	AT2G26730.1	53.333	645	272	13	24	649	11	645	0.0	622
Msa0367160	AT4G23740.1	48.013	629	292	13	34	644	22	633	0.0	573
Msa0367160	AT4G23740.2	48.013	629	292	13	34	644	22	633	0.0	573
Msa0367160	AT1G48480.1	46.178	628	284	17	37	626	32	643	7.89e-174	510

Showing 1 to 10 of 742 entries

Previous1 2 3 4 5…75Next

Find 194 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAACTTGTTCTTCTC+AGG	0.376695	3_1:+62711769	None:intergenic
AAACAATTACAATACAACTC+AGG	0.618783	3_1:+62710245	None:intergenic
AAAGCACCTCTCCAATCTCC+TGG	0.523631	3_1:-62710799	Msa0367160:CDS
AAAGGAGTTTGATCAGCAGA+TGG	0.604963	3_1:-62711590	Msa0367160:CDS
AAATAATTGCTATGACAAAA+AGG	0.316670	3_1:+62712694	None:intergenic
AAATCAAGTACAATTAGTTG+AGG	0.643882	3_1:+62712312	None:intergenic
AAATCAGATGTCTATAGCTT+TGG	0.449861	3_1:-62710850	Msa0367160:CDS
AAATGCAGCCGTCGTTATCT+TGG	0.425878	3_1:+62710974	None:intergenic
AAATTTAGAGTTAACTTTGT+TGG	0.397007	3_1:+62712755	None:intergenic
AACAAGGAAGTGACATTAAA+TGG	0.261850	3_1:-62710468	Msa0367160:three_prime_UTR

Showing 1 to 10 of 194 entries

Previous1 2 3 4 5…20Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGCAAAGTTTCTTGCTTTAT+TGG	-	chr3_1:62710229-62710248	Msa0367160:three_prime_UTR	30.0%
TTCTGCTTCAAAATTCTCAT+GGG	+	chr3_1:62710319-62710338	None:intergenic	30.0%
CACCATTTAATGAATTAGGA+AGG	+	chr3_1:62710802-62710821	None:intergenic	30.0%
CTTCCTAATTCATTAAATGG+TGG	-	chr3_1:62710800-62710819	Msa0367160:CDS	30.0%
ACACCACCATTTAATGAATT+AGG	+	chr3_1:62710806-62710825	None:intergenic	30.0%
GTACTAGACAACTAGTAAAA+CGG	+	chr3_1:62711153-62711172	None:intergenic	30.0%
CTTTATTGAATTGTCCTCTT+TGG	-	chr3_1:62711311-62711330	Msa0367160:intron	30.0%
ACTATTTGAATCACTAGAGA+TGG	+	chr3_1:62711360-62711379	None:intergenic	30.0%
AAACCTTTACCATATGCTTA+TGG	-	chr3_1:62711492-62711511	Msa0367160:CDS	30.0%
ACTAAAATGCCATAAGCATA+TGG	+	chr3_1:62711504-62711523	None:intergenic	30.0%

Showing 1 to 10 of 283 entries

Previous1 2 3 4 5…29Next

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	62710207	62714252	62710207	ID=Msa0367160;Name=Msa0367160
chr3_1	mRNA	62710207	62714252	62710207	ID=Msa0367160-mRNA-1;Parent=Msa0367160;Name=Msa0367160-mRNA-1;_AED=0.14;_eAED=0.14;_QI=253\|1\|1\|1\|0.5\|0.33\|3\|309\|649
chr3_1	exon	62710207	62711144	62710207	ID=Msa0367160-mRNA-1:exon:12246;Parent=Msa0367160-mRNA-1
chr3_1	exon	62711464	62712790	62711464	ID=Msa0367160-mRNA-1:exon:12245;Parent=Msa0367160-mRNA-1
chr3_1	exon	62714006	62714252	62714006	ID=Msa0367160-mRNA-1:exon:12244;Parent=Msa0367160-mRNA-1
chr3_1	five_prime_UTR	62714006	62714252	62714006	ID=Msa0367160-mRNA-1:five_prime_utr;Parent=Msa0367160-mRNA-1
chr3_1	five_prime_UTR	62712785	62712790	62712785	ID=Msa0367160-mRNA-1:five_prime_utr;Parent=Msa0367160-mRNA-1
chr3_1	CDS	62711464	62712784	62711464	ID=Msa0367160-mRNA-1:cds;Parent=Msa0367160-mRNA-1
chr3_1	CDS	62710516	62711144	62710516	ID=Msa0367160-mRNA-1:cds;Parent=Msa0367160-mRNA-1
chr3_1	three_prime_UTR	62710207	62710515	62710207	ID=Msa0367160-mRNA-1:three_prime_utr;Parent=Msa0367160-mRNA-1

Gene Sequence

>Msa0367160

ATGAAGACCAACAAAGTTAACTCTAAATTTATGTCCATGAAGTTCTATTCTGCTTCAGCGGCTTCTTTCCTTTTTGTCATAGCAATTATTTTCCCTCTTGCTATTGCCGATCTTAATTCCGATAAGCAAGCCCTTCTTGATTTTATCAATGCTGTGCCGCACCGTAAAAACTTGATGTGGAATCCATCCACCTCAATCTGTACATCTTGGGTTGGTATCACTTGCAATCAAGATGGAACTCGAGTTGTTAACGTCCGGCTCCCTGGAGTTGGACTAATTGGCTCCATCCCATCAAATACACTCGGAAAGCTTGATGCTGTGAAAATTATTAGCCTTCGTTCCAACCTACTCGGTGGAAATCTACCTGTTGACATTGCTTCTCTTCCGTCTCTTCAGTATCTCTACCTCCAACATAATAACTTTTCCGGTGAGATTCCAACCTCGTTGTCACCTCAACTAATTGTACTTGATTTGTCTTATAATTCTTTCGCCGGCAGAATTCCGAAGACAGTACAAAATTTGACAGAACTAAATAGTTTGAATCTCCAGAACAACTCCCTATCTGGAAGTATACCTAATCTCAATGCTACTAAGCTCGGTCATTTGAATTTAAGCTACAACAATTTGAGTGGACCTATCCCTTCAGCCCTTCAAGTTTATCCTAATTCGTCGTTTGAAGGAAACTCTCGTTTATGTGGACTGCCTCTAAAGCCGTGCTCTACGATTCCACCTCCTCCTGCCTTGACTCCTACTCCATCATCCGCACCTGGAAAGCAAAGCTCCAAAAGTAAATTGAGTAAGGTAGCTATCATAGCCATTGCGGTTGGAGGAGCCGTATTGCTATTTTTCATAGTTCTTGTTATTGTTCTTTGCTGTTTGAAGAAAGAAGGTGACGATGGTTCAAGAGAAGTTAAAAGGAAGGGTCCTGGTGCGAGCGGCGGTGGGGGTAGGGGTGAGAAGCCGAAAGAAGAGTTTGGGAGTGGAGTGCAAGAACCTGAGAAGAACAAGTTGGTTTTCTTTGAGGGAAGTTCTTATAATTTTGATCTTGAAGACTTGCTTAGAGCTTCAGCAGAAGTTTTAGGGAAAGGTAGCTATGGTACCTCATATAAGGCTATATTGGAGGAGGCAATGACAGTTGTGGTGAAAAGGTTGAAAGAAGTTGTGGTTGGCAAAAAGGAGTTTGATCAGCAGATGGAGATTATGGGAAGGGTTGGACAACATGCAAACGTTTTGCCGCTTCGCGCTTATTATTATTCAAAAGATGAAAAGCTTCTGGTTTATGACTATGTCCCTGCTGGCAACCTTTCCACACTCTTGCATGGCAATCGAACAGGTGGAAGAACTCCATTAGATTGGGACTCGAGAGTAAAAATATCTCTCGGAACTGCAAGAGGAATGGCCCACATCCATTCTGTCGGCGGTCCCAAATTCACACATGGAAATATCAAGTCCTCAAATGTCCTCCTCAACCAAGATAACGACGGCTGCATTTCTGATTTCGGCCTAGCCTCGCTTATGAATGTTCCTGCAAACCCTTCTAGAGCTGCAGGTTATCGTGCTCCTGAGGTGATTGAAACACGTAAGCACTCACATAAATCAGATGTCTATAGCTTTGGTGTCCTCCTTCTTGAGATGCTTACAGGGAAAGCACCTCTCCAATCTCCTGGACGCGACGATATGGTTGATCTCCCCAGGTGGGTTCAGTCTGTCGTACGAGAGGAGTGGACAGCCGAGGTTTTTGATGTAGAGCTAATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAAATGTTGCAAATTGCCATGGCTTGTGTAGCAAAGATGCCTGATATGAGACCTAACATGGATGAAGTGGTGAAAATGATCGAAGAGATCCGGCAATCTGACTCAGAGAACCGTCCATCTTCCGAAGAGAATAAATCTAAGGACTCAAATGTTCAAACTCCATAA

Protein sequence

>Msa0367160

MKTNKVNSKFMSMKFYSASAASFLFVIAIIFPLAIADLNSDKQALLDFINAVPHRKNLMWNPSTSICTSWVGITCNQDGTRVVNVRLPGVGLIGSIPSNTLGKLDAVKIISLRSNLLGGNLPVDIASLPSLQYLYLQHNNFSGEIPTSLSPQLIVLDLSYNSFAGRIPKTVQNLTELNSLNLQNNSLSGSIPNLNATKLGHLNLSYNNLSGPIPSALQVYPNSSFEGNSRLCGLPLKPCSTIPPPPALTPTPSSAPGKQSSKSKLSKVAIIAIAVGGAVLLFFIVLVIVLCCLKKEGDDGSREVKRKGPGASGGGGRGEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTSYKAILEEAMTVVVKRLKEVVVGKKEFDQQMEIMGRVGQHANVLPLRAYYYSKDEKLLVYDYVPAGNLSTLLHGNRTGGRTPLDWDSRVKISLGTARGMAHIHSVGGPKFTHGNIKSSNVLLNQDNDGCISDFGLASLMNVPANPSRAAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKMPDMRPNMDEVVKMIEEIRQSDSENRPSSEENKSKDSNVQTP*