AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0368060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0368060 MtrunA17_Chr3g0110351 88.644 317 26 4 1 313 1 311 6.21e-180 499
Msa0368060 MtrunA17_Chr5g0434571 62.391 343 76 10 1 313 37 356 8.62e-125 361
Msa0368060 MtrunA17_Chr4g0057031 62.679 209 75 3 1 209 1 206 1.42e-84 255
Msa0368060 MtrunA17_Chr7g0228891 60.697 201 68 3 1 199 1 192 9.85e-77 236
Msa0368060 MtrunA17_Chr6g0453471 67.123 146 43 1 1 141 1 146 1.83e-66 212
Msa0368060 MtrunA17_Chr4g0039971 72.441 127 35 0 1 127 2 128 3.48e-66 211
Msa0368060 MtrunA17_Chr7g0217741 55.000 180 77 1 1 176 1 180 2.36e-65 207
Msa0368060 MtrunA17_Chr4g0042671 53.125 192 70 1 1 172 1 192 2.75e-65 210
Msa0368060 MtrunA17_Chr3g0115821 70.079 127 38 0 1 127 1 127 1.42e-64 207
Msa0368060 MtrunA17_Chr8g0349261 70.896 134 37 2 1 132 1 134 2.53e-64 204
Msa0368060 MtrunA17_Chr4g0037141 53.333 180 83 1 1 179 1 180 1.69e-63 202
Msa0368060 MtrunA17_Chr5g0410961 69.291 127 39 0 1 127 1 127 8.52e-63 202
Msa0368060 MtrunA17_Chr2g0281071 70.866 127 36 1 1 126 1 127 8.31e-62 199
Msa0368060 MtrunA17_Chr2g0323411 71.429 126 36 0 1 126 1 126 1.23e-61 199
Msa0368060 MtrunA17_Chr3g0131121 63.504 137 50 0 1 137 1 137 2.02e-61 197
Msa0368060 MtrunA17_Chr4g0048511 70.079 127 37 1 1 126 1 127 2.30e-61 199
Msa0368060 MtrunA17_Chr1g0193371 66.923 130 43 0 1 130 1 130 1.75e-60 197
Msa0368060 MtrunA17_Chr7g0270891 50.000 200 88 3 1 197 1 191 2.68e-60 196
Msa0368060 MtrunA17_Chr5g0395281 66.142 127 43 0 1 127 1 127 1.67e-59 192
Msa0368060 MtrunA17_Chr4g0058631 49.744 195 90 2 1 191 1 191 5.52e-59 193
Msa0368060 MtrunA17_Chr3g0117091 60.690 145 56 1 1 145 1 144 1.12e-58 192
Msa0368060 MtrunA17_Chr5g0435101 63.492 126 46 0 3 128 2 127 1.52e-58 187
Msa0368060 MtrunA17_Chr8g0385321 64.341 129 46 0 1 129 1 129 1.62e-58 190
Msa0368060 MtrunA17_Chr1g0193801 65.385 130 45 0 1 130 1 130 2.67e-58 192
Msa0368060 MtrunA17_Chr1g0187761 40.000 290 135 7 1 288 1 253 7.47e-58 187
Msa0368060 MtrunA17_Chr1g0211161 65.891 129 44 0 3 131 4 132 1.27e-57 185
Msa0368060 MtrunA17_Chr3g0103281 61.871 139 53 0 1 139 1 139 1.71e-57 188
Msa0368060 MtrunA17_Chr7g0261281 69.828 116 35 0 1 116 1 116 1.76e-56 184
Msa0368060 MtrunA17_Chr2g0309911 62.879 132 48 1 1 132 1 131 1.40e-55 182
Msa0368060 MtrunA17_Chr7g0271241 67.692 130 42 0 1 130 1 130 2.14e-55 184
Msa0368060 MtrunA17_Chr3g0121241 64.800 125 44 0 5 129 35 159 2.15e-55 182
Msa0368060 MtrunA17_Chr6g0452271 61.538 130 50 0 1 130 1 130 9.05e-55 181
Msa0368060 MtrunA17_Chr1g0167691 40.141 284 132 8 1 284 1 246 1.53e-54 178
Msa0368060 MtrunA17_Chr4g0068061 66.379 116 39 0 1 116 1 116 2.28e-54 180
Msa0368060 MtrunA17_Chr7g0274581 63.559 118 43 0 1 118 1 118 3.11e-54 176
Msa0368060 MtrunA17_Chr1g0203411 49.383 162 81 1 1 162 1 161 9.77e-54 177
Msa0368060 MtrunA17_Chr1g0194951 68.103 116 37 0 1 116 1 116 1.00e-53 179
Msa0368060 MtrunA17_Chr4g0060721 50.909 165 73 2 1 157 2 166 1.91e-53 177
Msa0368060 MtrunA17_Chr7g0275911 64.103 117 42 0 1 117 1 117 2.24e-53 175
Msa0368060 MtrunA17_Chr3g0092401 63.866 119 43 0 1 119 2 120 4.46e-53 176
Msa0368060 MtrunA17_Chr7g0217221 67.797 118 38 0 1 118 1 118 5.59e-53 174
Msa0368060 MtrunA17_Chr4g0044421 63.780 127 45 1 3 128 2 128 6.18e-53 172
Msa0368060 MtrunA17_Chr2g0330041 51.534 163 78 1 1 162 1 163 1.48e-52 177
Msa0368060 MtrunA17_Chr8g0346561 62.712 118 44 0 1 118 1 118 1.55e-52 174
Msa0368060 MtrunA17_Chr8g0342521 62.602 123 46 0 1 123 1 123 2.03e-52 176
Msa0368060 MtrunA17_Chr1g0167661 40.562 249 139 3 1 246 1 243 2.26e-52 172
Msa0368060 MtrunA17_Chr8g0342541 61.789 123 47 0 1 123 1 123 2.85e-51 172
Msa0368060 MtrunA17_Chr7g0254411 62.400 125 45 1 1 123 1 125 4.39e-51 172
Msa0368060 MtrunA17_Chr4g0070611 57.971 138 58 0 1 138 1 138 6.18e-51 170
Msa0368060 MtrunA17_Chr8g0387421 61.864 118 45 0 1 118 1 118 7.89e-51 171
Msa0368060 MtrunA17_Chr7g0269831 68.103 116 37 0 1 116 1 116 1.80e-50 171
Msa0368060 MtrunA17_Chr8g0342481 64.103 117 41 1 1 116 1 117 1.85e-50 172
Msa0368060 MtrunA17_Chr4g0070641 57.971 138 58 0 1 138 1 138 3.37e-50 164
Msa0368060 MtrunA17_Chr2g0323351 64.407 118 42 0 1 118 1 118 2.33e-49 164
Msa0368060 MtrunA17_Chr2g0311221 67.273 110 36 0 2 111 4 113 3.21e-49 167
Msa0368060 MtrunA17_Chr4g0022911 52.817 142 65 2 1 140 1 142 6.61e-49 165
Msa0368060 MtrunA17_Chr4g0022901 61.207 116 44 1 1 115 1 116 8.10e-49 164
Msa0368060 MtrunA17_Chr4g0022931 52.381 147 59 3 1 146 1 137 1.09e-48 164
Msa0368060 MtrunA17_Chr5g0417821 54.795 146 66 0 10 155 5 150 1.84e-48 163
Msa0368060 MtrunA17_Chr4g0032401 64.865 111 39 0 12 122 17 127 4.54e-48 164
Msa0368060 MtrunA17_Chr5g0397231 61.818 110 42 0 1 110 1 110 1.01e-47 163
Msa0368060 MtrunA17_Chr1g0151941 41.667 204 112 3 1 203 1 198 1.02e-47 160
Msa0368060 MtrunA17_Chr6g0453211 63.964 111 40 0 1 111 1 111 1.38e-47 162
Msa0368060 MtrunA17_Chr2g0328771 53.333 150 55 2 12 156 20 159 1.47e-47 162
Msa0368060 MtrunA17_Chr4g0022891 46.196 184 85 3 1 182 1 172 2.17e-46 157
Msa0368060 MtrunA17_Chr5g0400821 59.829 117 46 1 1 116 1 117 2.68e-45 156
Msa0368060 MtrunA17_Chr4g0028311 53.906 128 58 1 1 127 1 128 5.11e-45 155
Msa0368060 MtrunA17_Chr1g0152011 59.829 117 46 1 1 116 1 117 6.54e-45 155
Msa0368060 MtrunA17_Chr3g0088461 61.818 110 42 0 8 117 18 127 8.46e-45 155
Msa0368060 MtrunA17_Chr7g0264641 57.500 120 50 1 1 119 1 120 1.65e-44 152
Msa0368060 MtrunA17_Chr4g0022881 57.895 114 48 0 1 114 1 114 1.84e-44 151
Msa0368060 MtrunA17_Chr1g0203441 54.887 133 58 2 1 132 1 132 5.62e-44 151
Msa0368060 MtrunA17_Chr3g0135311 51.020 147 67 2 1 142 1 147 1.20e-43 152
Msa0368060 MtrunA17_Chr6g0470971 58.120 117 47 1 1 115 1 117 1.43e-43 150
Msa0368060 MtrunA17_Chr7g0247131 56.800 125 49 1 43 162 9 133 1.46e-43 150
Msa0368060 MtrunA17_Chr8g0354661 60.185 108 43 0 10 117 35 142 1.53e-43 156
Msa0368060 MtrunA17_Chr7g0228231 60.748 107 42 0 12 118 14 120 2.20e-43 148
Msa0368060 MtrunA17_Chr1g0168661 62.857 105 39 0 13 117 22 126 2.20e-43 149
Msa0368060 MtrunA17_Chr1g0186061 62.857 105 39 0 13 117 21 125 3.32e-43 149
Msa0368060 MtrunA17_Chr6g0450101 55.372 121 52 1 1 119 1 121 6.46e-43 147
Msa0368060 MtrunA17_Chr1g0209661 52.542 118 56 0 12 129 27 144 1.01e-42 149
Msa0368060 MtrunA17_Chr2g0327351 58.559 111 45 1 1 110 1 111 1.53e-42 149
Msa0368060 MtrunA17_Chr1g0194291 54.783 115 52 0 8 122 17 131 8.52e-42 145
Msa0368060 MtrunA17_Chr4g0072751 58.559 111 45 1 1 110 1 111 1.67e-41 147
Msa0368060 MtrunA17_Chr4g0054391 59.091 110 44 1 1 109 1 110 1.94e-41 145
Msa0368060 MtrunA17_Chr3g0099131 58.879 107 44 0 12 118 41 147 2.05e-41 150
Msa0368060 MtrunA17_Chr2g0327821 43.125 160 83 2 12 163 6 165 1.52e-40 141
Msa0368060 MtrunA17_Chr1g0194301 52.174 115 55 0 8 122 29 143 1.88e-40 142
Msa0368060 MtrunA17_Chr3g0080861 55.556 108 48 0 10 117 35 142 3.13e-40 147
Msa0368060 MtrunA17_Chr6g0487491 52.419 124 50 2 1 115 1 124 2.22e-39 139
Msa0368060 MtrunA17_Chr1g0154031 40.217 184 93 2 12 195 76 242 1.07e-38 141
Msa0368060 MtrunA17_Chr4g0042611 67.045 88 29 0 1 88 1 88 1.18e-38 131
Msa0368060 MtrunA17_Chr1g0180391 52.632 114 54 0 4 117 11 124 1.18e-38 136
Msa0368060 MtrunA17_Chr4g0055981 55.556 117 52 0 9 125 52 168 1.74e-38 136
Msa0368060 MtrunA17_Chr2g0294811 68.182 88 28 0 1 88 1 88 3.02e-38 131
Msa0368060 MtrunA17_Chr2g0293911 53.043 115 54 0 8 122 20 134 1.02e-37 136
Msa0368060 MtrunA17_Chr4g0030881 55.455 110 42 1 13 115 8 117 1.28e-37 134
Msa0368060 MtrunA17_Chr8g0343831 59.048 105 43 0 14 118 10 114 1.65e-37 134
Msa0368060 MtrunA17_Chr4g0068921 53.043 115 54 0 8 122 20 134 3.39e-37 131
Msa0368060 MtrunA17_Chr2g0322521 57.798 109 46 0 9 117 26 134 5.72e-37 136
Msa0368060 MtrunA17_Chr7g0240821 56.075 107 47 0 16 122 5 111 2.29e-35 127
Msa0368060 MtrunA17_Chr5g0440781 46.099 141 68 3 13 146 13 152 2.30e-35 126
Msa0368060 MtrunA17_Chr5g0441141 46.099 141 68 3 13 146 13 152 6.90e-35 127
Msa0368060 MtrunA17_Chr5g0440761 46.099 141 68 3 13 146 13 152 7.03e-35 127
Msa0368060 MtrunA17_Chr5g0434931 55.660 106 47 0 11 116 34 139 1.20e-34 127
Msa0368060 MtrunA17_Chr5g0434911 53.636 110 51 0 7 116 16 125 1.74e-34 127
Msa0368060 MtrunA17_Chr8g0342461 61.111 90 34 1 1 89 1 90 3.14e-34 122
Msa0368060 MtrunA17_Chr8g0342511 60.920 87 34 0 1 87 1 87 3.63e-34 120
Msa0368060 MtrunA17_Chr8g0342471 61.111 90 34 1 1 89 1 90 7.05e-34 121
Msa0368060 MtrunA17_Chr8g0342531 59.551 89 36 0 1 89 1 89 1.01e-33 121
Msa0368060 MtrunA17_Chr1g0192411 42.331 163 77 4 8 163 8 160 2.47e-33 126
Msa0368060 MtrunA17_Chr7g0220341 54.128 109 48 1 10 116 23 131 2.52e-33 124
Msa0368060 MtrunA17_Chr5g0434831 54.717 106 48 0 11 116 6 111 1.37e-32 119
Msa0368060 MtrunA17_Chr7g0228991 54.717 106 48 0 11 116 28 133 2.86e-32 120
Msa0368060 MtrunA17_Chr8g0360111 53.922 102 47 0 11 112 24 125 2.85e-31 118
Msa0368060 MtrunA17_Chr5g0395221 60.714 84 33 0 5 88 5 88 3.69e-31 112
Msa0368060 MtrunA17_Chr2g0323321 58.696 92 37 1 1 92 1 91 4.49e-31 112
Msa0368060 MtrunA17_Chr5g0434841 52.830 106 50 0 11 116 19 124 5.09e-31 118
Msa0368060 MtrunA17_Chr3g0099141 55.172 87 39 0 8 94 36 122 1.10e-30 112
Msa0368060 MtrunA17_Chr3g0093811 52.688 93 44 0 43 135 13 105 1.14e-28 111
Msa0368060 MtrunA17_Chr5g0441131 48.276 116 58 2 10 124 7 121 1.30e-28 108
Msa0368060 MtrunA17_Chr5g0429661 53.000 100 44 2 12 110 120 217 1.57e-28 112
Msa0368060 MtrunA17_Chr8g0334881 48.148 108 55 1 8 114 6 113 1.86e-28 111
Msa0368060 MtrunA17_Chr4g0013361 49.038 104 52 1 12 114 10 113 2.68e-28 110
Msa0368060 MtrunA17_Chr3g0133601 47.573 103 51 2 14 115 37 137 4.62e-26 103
Msa0368060 MtrunA17_Chr4g0008551 39.568 139 69 4 14 143 38 170 7.34e-26 105
Msa0368060 MtrunA17_Chr3g0117511 43.243 111 60 2 9 118 178 286 1.46e-25 105
Msa0368060 MtrunA17_Chr4g0053431 47.170 106 47 2 14 115 5 105 2.48e-25 102
Msa0368060 MtrunA17_Chr7g0238631 49.057 106 51 2 12 116 111 214 4.70e-25 105
Msa0368060 MtrunA17_Chr6g0454921 43.750 112 60 2 14 124 15 124 7.24e-25 99.8
Msa0368060 MtrunA17_Chr4g0058991 44.144 111 59 2 9 118 204 312 7.77e-25 103
Msa0368060 MtrunA17_Chr5g0401731 40.945 127 67 3 14 134 15 139 9.34e-25 102
Msa0368060 MtrunA17_Chr3g0139671 44.340 106 56 2 12 116 83 186 3.77e-23 100
Msa0368060 MtrunA17_Chr6g0480581 39.535 129 71 3 14 137 4 130 4.61e-23 95.5
Msa0368060 MtrunA17_Chr6g0453751 50.000 92 37 2 11 93 19 110 7.87e-23 92.0
Msa0368060 MtrunA17_Chr7g0229101 57.746 71 30 0 43 113 3 73 2.74e-22 92.8
Msa0368060 MtrunA17_Chr1g0157731 44.340 106 56 2 12 116 89 192 9.22e-22 95.9
Msa0368060 MtrunA17_Chr7g0229131 42.105 114 63 2 43 156 3 113 1.02e-21 90.1
Msa0368060 MtrunA17_Chr6g0460661 40.870 115 64 3 14 127 16 127 1.65e-21 89.4
Msa0368060 MtrunA17_Chr5g0425591 49.412 85 42 1 10 93 7 91 3.74e-21 86.3
Msa0368060 MtrunA17_Chr5g0437321 43.396 106 54 3 8 112 16 116 3.74e-21 91.3
Msa0368060 MtrunA17_Chr7g0228531 43.810 105 57 2 14 118 220 322 4.00e-21 93.2
Msa0368060 MtrunA17_Chr5g0434901 56.061 66 29 0 48 113 9 74 1.94e-20 85.1
Msa0368060 MtrunA17_Chr5g0417621 41.509 106 59 2 14 118 134 237 4.08e-20 90.1
Msa0368060 MtrunA17_Chr7g0233061 39.552 134 68 5 14 140 180 307 4.29e-20 89.4
Msa0368060 MtrunA17_Chr4g0042501 41.509 106 59 2 14 118 105 208 4.65e-20 90.1
Msa0368060 MtrunA17_Chr1g0177901 35.664 143 85 4 25 162 5 145 3.03e-19 84.3
Msa0368060 MtrunA17_Chr5g0397841 45.455 99 51 2 12 109 108 204 1.42e-18 85.9
Msa0368060 MtrunA17_Chr6g0460671 39.252 107 62 2 14 119 99 203 7.55e-18 82.8
Msa0368060 MtrunA17_Chr3g0125801 38.400 125 71 3 14 134 16 138 1.88e-17 80.9
Msa0368060 MtrunA17_Chr7g0228401 44.828 87 45 2 25 110 290 374 2.76e-17 82.0
Msa0368060 MtrunA17_Chr5g0395231 66.000 50 17 0 78 127 5 54 3.75e-17 79.3
Msa0368060 MtrunA17_Chr7g0228481 40.000 110 61 3 14 120 220 327 5.26e-17 81.3
Msa0368060 MtrunA17_Chr7g0238651 37.069 116 65 2 17 124 10 125 1.52e-16 79.3
Msa0368060 MtrunA17_Chr7g0254261 41.071 112 59 3 9 115 80 189 1.96e-16 79.0
Msa0368060 MtrunA17_Chr7g0247141 62.500 48 17 1 1 47 1 48 4.34e-16 71.6
Msa0368060 MtrunA17_Chr4g0042621 37.500 104 45 1 89 172 15 118 2.79e-14 72.4
Msa0368060 MtrunA17_Chr5g0416341 37.624 101 62 1 17 117 29 128 1.53e-12 67.8
Msa0368060 MtrunA17_Chr3g0145551 55.357 56 23 1 92 145 2 57 2.07e-12 62.0
Msa0368060 MtrunA17_Chr5g0434871 58.140 43 18 0 74 116 2 44 3.22e-12 61.2
Msa0368060 MtrunA17_Chr1g0193901 45.238 84 44 2 12 93 11 94 4.78e-12 62.0
Msa0368060 MtrunA17_Chr1g0193891 45.238 84 44 2 12 93 11 94 4.78e-12 62.0
Msa0368060 MtrunA17_Chr1g0193871 45.238 84 44 2 12 93 11 94 4.78e-12 62.0
Msa0368060 MtrunA17_Chr1g0193881 45.238 84 44 2 12 93 11 94 4.78e-12 62.0
Msa0368060 MtrunA17_Chr3g0104491 41.791 67 35 1 53 115 1 67 2.32e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0368060 AT1G66230.1 57.823 294 102 6 1 292 1 274 3.26e-98 291
Msa0368060 AT5G16600.1 48.406 345 128 9 1 313 1 327 1.44e-97 291
Msa0368060 AT4G22680.1 86.154 130 18 0 1 130 1 130 4.51e-81 247
Msa0368060 AT4G12350.1 58.216 213 81 3 1 210 1 208 2.45e-80 246
Msa0368060 AT5G14340.1 66.452 155 51 1 1 155 13 166 3.47e-72 224
Msa0368060 AT5G62320.1 61.538 169 55 2 2 163 3 168 3.13e-70 218
Msa0368060 AT3G02940.2 72.441 127 35 0 1 127 1 127 3.93e-66 210
Msa0368060 AT3G02940.1 72.441 127 35 0 1 127 1 127 6.85e-66 210
Msa0368060 AT3G02940.3 72.441 127 35 0 1 127 1 127 6.85e-66 210
Msa0368060 AT3G61250.1 46.444 239 118 2 1 239 1 229 8.55e-66 209
Msa0368060 AT3G01140.2 66.901 142 46 1 1 142 1 141 2.70e-65 209
Msa0368060 AT5G15310.1 71.654 127 36 0 1 127 1 127 3.61e-65 208
Msa0368060 AT5G15310.2 71.654 127 36 0 1 127 1 127 5.37e-65 207
Msa0368060 AT5G15310.4 71.654 127 36 0 1 127 1 127 7.81e-65 204
Msa0368060 AT4G28110.1 70.635 126 37 0 1 126 1 126 1.67e-64 205
Msa0368060 AT5G16770.4 70.866 127 37 0 1 127 1 127 2.22e-64 206
Msa0368060 AT5G16770.3 70.866 127 37 0 1 127 1 127 2.22e-64 206
Msa0368060 AT5G16770.1 70.866 127 37 0 1 127 1 127 5.71e-64 205
Msa0368060 AT5G16770.2 70.866 127 37 0 1 127 1 127 5.71e-64 205
Msa0368060 AT1G34670.1 70.866 127 37 0 1 127 1 127 2.60e-63 204
Msa0368060 AT4G21440.1 69.841 126 38 0 1 126 1 126 1.05e-62 202
Msa0368060 AT5G65230.1 70.079 127 38 0 1 127 1 127 1.76e-62 201
Msa0368060 AT3G01140.1 66.667 138 45 1 5 142 48 184 5.10e-62 202
Msa0368060 AT5G10280.1 56.098 164 66 1 1 158 1 164 7.21e-62 200
Msa0368060 AT4G05100.1 70.079 127 37 1 1 126 1 127 1.94e-61 198
Msa0368060 AT4G38620.1 50.000 188 87 2 1 188 1 181 4.27e-61 196
Msa0368060 AT5G26660.1 62.838 148 49 2 1 142 1 148 5.72e-61 198
Msa0368060 AT4G17785.2 67.424 132 42 1 1 131 1 132 6.68e-61 198
Msa0368060 AT4G17785.1 67.424 132 42 1 1 131 1 132 8.59e-61 198
Msa0368060 AT2G16720.1 58.741 143 59 0 1 143 1 143 1.30e-60 194
Msa0368060 AT1G57560.1 63.309 139 51 0 1 139 1 139 4.49e-60 194
Msa0368060 AT5G61420.2 63.309 139 48 1 1 136 1 139 7.23e-60 196
Msa0368060 AT4G09460.1 59.712 139 56 0 1 139 1 139 8.99e-60 191
Msa0368060 AT1G22640.1 57.746 142 60 0 1 142 1 142 1.03e-59 192
Msa0368060 AT1G57560.2 66.923 130 43 0 1 130 1 130 1.17e-59 192
Msa0368060 AT4G01680.3 61.074 149 55 1 1 149 1 146 1.34e-59 191
Msa0368060 AT5G07690.1 63.121 141 52 0 1 141 1 141 1.44e-59 194
Msa0368060 AT5G07700.1 40.391 307 142 8 1 293 1 280 2.58e-59 193
Msa0368060 AT5G07700.2 40.391 307 142 8 1 293 1 280 2.58e-59 193
Msa0368060 AT4G01680.1 66.923 130 43 0 1 130 1 130 3.79e-59 193
Msa0368060 AT1G09540.1 67.692 130 42 0 1 130 1 130 4.51e-59 194
Msa0368060 AT3G23250.1 55.215 163 57 2 1 151 1 159 2.93e-58 189
Msa0368060 AT1G06180.1 70.690 116 34 0 1 116 1 116 3.73e-58 187
Msa0368060 AT3G13540.1 55.263 152 68 0 5 156 16 167 7.56e-58 187
Msa0368060 AT5G56110.1 62.590 139 52 0 1 139 1 139 1.66e-57 188
Msa0368060 AT4G34990.1 58.042 143 60 0 1 143 1 143 4.69e-57 186
Msa0368060 AT1G35515.1 50.270 185 80 2 1 185 1 173 4.93e-57 183
Msa0368060 AT5G54230.1 67.460 126 41 0 1 126 1 126 9.10e-57 186
Msa0368060 AT1G18570.1 63.433 134 48 1 1 133 1 134 1.68e-56 186
Msa0368060 AT2G31180.1 67.797 118 38 0 1 118 1 118 2.19e-56 183
Msa0368060 AT4G01680.2 61.268 142 43 1 1 130 1 142 1.26e-55 184
Msa0368060 AT1G74080.1 58.389 149 60 1 1 149 1 147 1.36e-55 184
Msa0368060 AT3G47600.1 67.227 119 39 0 1 119 1 119 1.79e-55 183
Msa0368060 AT5G49330.1 60.000 135 53 1 1 134 1 135 2.56e-55 183
Msa0368060 AT2G47460.1 54.545 154 65 1 1 149 1 154 5.24e-54 181
Msa0368060 AT3G12720.1 61.240 129 49 1 1 129 12 139 5.70e-54 179
Msa0368060 AT5G60890.1 45.238 210 111 3 1 208 1 208 7.72e-54 178
Msa0368060 AT1G16490.1 67.826 115 37 0 2 116 4 118 1.01e-53 177
Msa0368060 AT3G62610.1 38.614 303 154 9 1 288 1 286 1.51e-53 179
Msa0368060 AT5G62470.2 64.706 119 42 0 1 119 1 119 2.18e-53 178
Msa0368060 AT1G08810.1 65.254 118 41 0 1 118 1 118 3.44e-53 176
Msa0368060 AT1G63910.1 43.333 210 113 3 1 204 1 210 4.74e-53 178
Msa0368060 AT3G28910.1 65.574 122 42 0 1 122 1 122 5.82e-53 176
Msa0368060 AT1G56160.1 67.826 115 37 0 2 116 4 118 1.72e-52 174
Msa0368060 AT1G79180.1 65.812 117 40 0 2 118 4 120 2.48e-52 174
Msa0368060 AT5G62470.1 64.706 119 41 1 1 119 1 118 7.40e-52 174
Msa0368060 AT1G74650.1 64.706 119 42 0 1 119 1 119 1.18e-51 173
Msa0368060 AT3G28470.1 61.481 135 52 0 1 135 1 135 1.49e-51 172
Msa0368060 AT3G13890.2 64.655 116 41 0 1 116 1 116 3.78e-51 173
Msa0368060 AT3G12820.1 65.517 116 40 0 3 118 5 120 7.07e-51 168
Msa0368060 AT1G74430.1 59.055 127 52 0 1 127 1 127 2.59e-48 163
Msa0368060 AT1G18710.1 54.348 138 62 1 1 137 1 138 4.60e-48 162
Msa0368060 AT3G13890.1 60.000 125 41 1 1 116 1 125 5.82e-48 165
Msa0368060 AT5G12870.1 67.593 108 35 0 12 119 18 125 1.23e-47 161
Msa0368060 AT3G08500.1 64.545 110 39 0 8 117 26 135 9.71e-46 158
Msa0368060 AT1G79180.2 51.333 150 40 1 2 118 4 153 1.83e-45 157
Msa0368060 AT5G23000.1 58.974 117 47 1 1 116 1 117 7.32e-45 155
Msa0368060 AT3G49690.1 59.829 117 46 1 1 116 1 117 9.67e-45 155
Msa0368060 AT3G01530.1 62.264 106 40 0 12 117 25 130 9.81e-45 151
Msa0368060 AT5G65790.1 58.974 117 47 1 1 116 1 117 1.37e-44 156
Msa0368060 AT2G36890.1 55.039 129 57 1 1 128 1 129 1.84e-44 154
Msa0368060 AT5G57620.1 58.974 117 47 1 1 116 1 117 1.86e-44 154
Msa0368060 AT3G24310.1 63.551 107 39 0 11 117 17 123 2.55e-44 152
Msa0368060 AT2G36890.2 55.039 129 57 1 1 128 42 170 2.64e-44 154
Msa0368060 AT4G13480.1 64.762 105 37 0 13 117 7 111 3.70e-44 152
Msa0368060 AT4G37780.1 56.410 117 50 1 1 116 1 117 5.66e-43 150
Msa0368060 AT2G32460.2 56.780 118 50 1 11 128 5 121 5.66e-43 154
Msa0368060 AT2G32460.1 56.780 118 50 1 11 128 17 133 6.24e-43 154
Msa0368060 AT5G40350.1 59.633 109 44 0 12 120 17 125 1.26e-42 146
Msa0368060 AT3G27810.1 59.813 107 43 0 12 118 20 126 1.71e-42 146
Msa0368060 AT1G68320.1 54.237 118 54 0 12 129 19 136 1.84e-42 148
Msa0368060 AT5G06100.1 55.263 114 50 1 8 121 28 140 2.35e-42 152
Msa0368060 AT5G06100.5 56.364 110 48 0 8 117 28 137 8.47e-42 152
Msa0368060 AT5G06100.2 56.364 110 48 0 8 117 28 137 8.47e-42 152
Msa0368060 AT5G06100.3 56.364 110 48 0 8 117 28 137 8.47e-42 152
Msa0368060 AT5G06100.4 56.364 110 48 0 8 117 28 137 8.47e-42 152
Msa0368060 AT5G55020.1 59.633 109 44 0 10 118 24 132 1.06e-41 151
Msa0368060 AT3G06490.1 57.391 115 49 0 8 122 15 129 1.77e-41 147
Msa0368060 AT1G25340.1 52.991 117 55 0 13 129 19 135 1.80e-41 145
Msa0368060 AT5G52260.1 63.107 103 38 0 13 115 13 115 1.92e-41 145
Msa0368060 AT3G30210.1 44.444 171 88 2 11 177 26 193 2.08e-41 145
Msa0368060 AT3G11440.2 56.604 106 46 0 12 117 41 146 5.87e-41 148
Msa0368060 AT4G25560.1 61.165 103 40 0 13 115 11 113 7.55e-41 144
Msa0368060 AT1G48000.1 46.000 150 73 1 10 151 30 179 1.02e-40 142
Msa0368060 AT4G26930.1 47.552 143 68 2 10 152 17 152 1.19e-40 146
Msa0368060 AT3G11440.3 56.604 106 46 0 12 117 41 146 1.83e-40 148
Msa0368060 AT3G11440.4 56.604 106 46 0 12 117 41 146 1.83e-40 148
Msa0368060 AT3G11440.1 56.604 106 46 0 12 117 41 146 1.83e-40 148
Msa0368060 AT2G26960.1 44.022 184 87 4 9 187 17 189 2.74e-40 146
Msa0368060 AT3G46130.1 56.897 116 48 1 11 124 8 123 3.17e-40 141
Msa0368060 AT5G14750.1 58.654 104 43 0 13 116 17 120 4.02e-40 139
Msa0368060 AT5G35550.1 60.748 107 42 0 12 118 14 120 4.64e-40 141
Msa0368060 AT5G59780.3 58.879 107 44 0 12 118 8 114 5.61e-40 140
Msa0368060 AT5G26660.2 65.385 104 30 2 45 142 14 117 7.63e-40 142
Msa0368060 AT5G40330.1 58.654 104 43 0 13 116 13 116 1.21e-39 139
Msa0368060 AT2G47190.1 54.054 111 51 0 12 122 20 130 1.24e-39 140
Msa0368060 AT3G27920.1 55.769 104 46 0 13 116 15 118 9.97e-38 134
Msa0368060 AT3G53200.1 56.731 104 45 0 12 115 9 112 2.88e-37 133
Msa0368060 AT1G25340.2 50.427 117 53 1 13 129 19 130 3.90e-37 134
Msa0368060 AT3G48920.1 55.882 102 45 0 13 114 19 120 5.50e-37 133
Msa0368060 AT1G25340.3 50.427 117 53 1 13 129 19 130 8.59e-37 134
Msa0368060 AT5G49620.1 51.304 115 56 0 8 122 22 136 2.01e-36 133
Msa0368060 AT5G52600.1 43.662 142 71 1 12 144 12 153 2.77e-36 129
Msa0368060 AT3G47600.2 62.500 96 32 1 24 119 22 113 4.99e-35 130
Msa0368060 AT1G66370.1 54.783 115 48 1 1 115 1 111 3.26e-33 123
Msa0368060 AT5G49620.2 45.736 129 56 1 8 122 22 150 8.56e-33 124
Msa0368060 AT1G56650.1 38.009 221 108 5 11 211 7 218 1.26e-31 119
Msa0368060 AT1G66380.1 58.095 105 44 0 11 115 7 111 3.43e-31 114
Msa0368060 AT1G66390.1 59.048 105 43 0 11 115 7 111 6.38e-31 117
Msa0368060 AT5G35550.2 63.750 80 29 0 39 118 44 123 3.82e-30 115
Msa0368060 AT3G27810.2 64.865 74 26 0 45 118 4 77 7.87e-30 112
Msa0368060 AT3G46130.3 62.651 83 29 1 44 124 9 91 8.35e-30 113
Msa0368060 AT3G12820.2 69.444 72 22 0 47 118 1 72 1.26e-29 112
Msa0368060 AT3G60460.1 50.962 104 50 1 12 114 11 114 1.58e-29 114
Msa0368060 AT3G46130.4 63.415 82 28 1 45 124 20 101 1.91e-29 112
Msa0368060 AT5G59780.2 66.216 74 25 0 45 118 20 93 2.19e-29 112
Msa0368060 AT5G14750.3 58.333 84 30 1 38 116 3 86 2.32e-29 110
Msa0368060 AT5G40350.2 64.474 76 27 0 45 120 5 80 2.92e-29 110
Msa0368060 AT2G26950.1 46.903 113 59 1 9 121 13 124 6.44e-29 114
Msa0368060 AT1G22640.3 57.143 84 36 0 59 142 2 85 1.18e-28 109
Msa0368060 AT3G53200.2 67.606 71 23 0 45 115 9 79 2.69e-28 108
Msa0368060 AT1G18960.1 45.082 122 64 2 14 135 10 128 3.22e-28 111
Msa0368060 AT5G58850.1 46.721 122 57 3 12 132 103 217 3.91e-28 113
Msa0368060 AT5G11050.1 46.602 103 52 2 14 115 105 205 4.44e-27 110
Msa0368060 AT4G18770.1 46.847 111 56 2 9 118 212 320 1.09e-26 109
Msa0368060 AT1G71030.2 57.692 78 33 0 51 128 5 82 4.02e-26 102
Msa0368060 AT1G71030.1 57.692 78 33 0 51 128 19 96 4.99e-26 102
Msa0368060 AT3G27785.1 43.651 126 66 3 9 131 184 307 4.37e-25 104
Msa0368060 AT2G39880.1 45.600 125 56 3 14 134 50 166 8.96e-25 103
Msa0368060 AT5G02320.1 47.170 106 53 2 12 116 125 228 1.14e-24 104
Msa0368060 AT5G02320.2 47.170 106 53 2 12 116 125 228 1.14e-24 104
Msa0368060 AT5G02320.3 47.170 106 53 2 12 116 65 168 1.15e-24 103
Msa0368060 AT3G09370.2 46.667 105 53 2 12 115 133 235 3.65e-24 102
Msa0368060 AT3G09370.1 46.667 105 53 2 12 115 128 230 3.71e-24 102
Msa0368060 AT3G55730.1 46.364 110 50 2 14 119 56 160 3.97e-24 101
Msa0368060 AT3G09370.3 46.667 105 53 2 12 115 141 243 5.24e-24 102
Msa0368060 AT3G09230.1 45.794 107 49 2 14 116 55 156 9.09e-24 100
Msa0368060 AT5G67300.1 45.631 103 53 2 14 115 6 106 1.29e-23 99.0
Msa0368060 AT3G50060.1 45.631 103 53 2 14 115 6 106 1.94e-23 98.2
Msa0368060 AT5G40360.1 40.741 108 62 2 12 119 156 261 7.89e-23 97.4
Msa0368060 AT2G25230.1 41.270 126 69 3 9 131 21 144 8.65e-23 95.1
Msa0368060 AT4G37260.1 45.631 103 53 2 14 115 13 113 9.60e-23 96.7
Msa0368060 AT5G11510.3 44.340 106 56 2 12 116 79 182 1.15e-22 99.0
Msa0368060 AT5G11510.1 44.340 106 56 2 12 116 79 182 1.15e-22 99.0
Msa0368060 AT5G11510.4 44.340 106 56 2 12 116 79 182 1.15e-22 99.0
Msa0368060 AT5G11510.2 44.340 106 56 2 12 116 79 182 1.94e-22 98.2
Msa0368060 AT5G11510.5 44.340 106 56 2 12 116 79 182 2.14e-22 98.2
Msa0368060 AT3G23250.2 46.667 105 40 2 59 151 2 102 4.68e-22 92.8
Msa0368060 AT2G23290.1 48.077 104 49 4 14 115 13 113 1.13e-21 93.6
Msa0368060 AT1G66380.3 60.274 73 29 0 43 115 6 78 1.13e-21 88.2
Msa0368060 AT4G32730.1 43.396 106 57 2 12 116 85 188 1.40e-21 95.9
Msa0368060 AT4G32730.5 43.396 106 57 2 12 116 85 188 1.41e-21 95.9
Msa0368060 AT4G32730.4 43.396 106 57 2 12 116 85 188 1.41e-21 95.9
Msa0368060 AT4G32730.3 43.396 106 57 2 12 116 85 188 1.41e-21 95.9
Msa0368060 AT4G32730.2 43.396 106 57 2 12 116 85 188 1.41e-21 95.9
Msa0368060 AT1G69560.1 40.541 111 63 2 9 118 102 210 1.91e-21 93.2
Msa0368060 AT1G69560.2 40.541 111 63 2 9 118 118 226 2.50e-21 93.2
Msa0368060 AT1G26780.1 40.496 121 69 2 12 131 96 214 3.65e-21 91.7
Msa0368060 AT1G26780.2 40.496 121 69 2 12 131 96 214 4.24e-21 92.8
Msa0368060 AT1G17950.1 44.660 103 54 2 14 115 5 105 1.48e-20 89.4
Msa0368060 AT5G14750.4 62.069 58 22 0 59 116 2 59 1.17e-19 84.0
Msa0368060 AT5G14750.2 62.069 58 22 0 59 116 2 59 1.17e-19 84.0
Msa0368060 AT1G73410.1 43.396 106 57 2 14 118 6 109 5.95e-19 84.7
Msa0368060 AT5G61420.1 66.102 59 17 1 81 136 2 60 6.89e-19 85.5
Msa0368060 AT1G73410.2 32.143 196 112 6 14 208 6 181 2.24e-18 82.4
Msa0368060 AT3G29020.1 36.792 106 64 2 14 118 65 168 4.22e-18 82.0
Msa0368060 AT3G29020.2 36.792 106 64 2 14 118 67 170 5.46e-18 83.2
Msa0368060 AT4G00540.2 40.179 112 61 3 12 119 101 210 5.47e-18 84.3
Msa0368060 AT4G00540.1 40.179 112 61 3 12 119 99 208 8.64e-18 84.0
Msa0368060 AT5G40430.1 34.400 125 78 2 9 131 49 171 1.42e-17 81.3
Msa0368060 AT5G14340.2 57.353 68 28 1 88 155 10 76 1.51e-17 79.3
Msa0368060 AT1G66380.2 52.381 84 40 0 11 94 7 90 2.99e-17 76.6
Msa0368060 AT4G33450.1 35.897 117 67 3 3 118 13 122 3.06e-17 80.1
Msa0368060 AT5G17800.1 34.752 141 73 3 14 154 93 214 5.74e-17 80.5
Msa0368060 AT4G28110.2 79.487 39 8 0 88 126 4 42 1.49e-16 77.0
Msa0368060 AT5G15310.3 82.500 40 7 0 88 127 9 48 2.88e-16 77.4
Msa0368060 AT3G46130.2 57.895 57 22 1 70 124 1 57 2.00e-15 73.9
Msa0368060 AT5G59780.1 57.895 57 22 1 70 124 1 57 2.28e-15 73.2
Msa0368060 AT1G22640.2 56.364 55 24 0 88 142 16 70 2.92e-15 73.2
Msa0368060 AT2G37630.1 37.864 103 62 1 17 117 7 109 3.66e-15 75.9
Msa0368060 AT3G28910.2 65.217 46 16 0 77 122 1 46 8.11e-14 70.5
Msa0368060 AT1G74650.3 69.767 43 13 0 77 119 1 43 2.91e-13 68.9
Msa0368060 AT4G25560.2 57.447 47 20 0 69 115 1 47 3.29e-13 68.2
Msa0368060 AT5G39700.1 33.962 106 69 1 13 118 55 159 5.07e-13 67.0
Msa0368060 AT1G14350.2 37.624 101 62 1 17 117 28 127 1.03e-12 68.6
Msa0368060 AT1G14350.1 37.624 101 62 1 17 117 28 127 1.03e-12 68.6
Msa0368060 AT2G02820.1 37.624 101 62 1 17 117 33 132 1.89e-12 68.2
Msa0368060 AT2G02820.2 37.624 101 62 1 17 117 33 132 2.04e-12 67.8
Msa0368060 AT2G02820.3 37.624 101 62 1 17 117 33 132 2.06e-12 67.4
Msa0368060 AT1G74430.2 48.276 58 30 0 70 127 1 58 4.74e-12 64.7

Find 65 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTAACATTTCCAATATT+TGG 0.109075 3_1:+64153550 Msa0368060:five_prime_UTR
ATTTCATTTGGTATTATTAT+TGG 0.157835 3_1:-64155224 None:intergenic
CTTACTTGTAATGTTATTAT+AGG 0.174543 3_1:+64155595 Msa0368060:three_prime_UTR
GATGACTCAAATGATGTTTC+TGG 0.203229 3_1:-64155107 None:intergenic
CTGATTCACTCTTTATTCTT+TGG 0.205846 3_1:-64155623 None:intergenic
ATAATATTAATATGACATTA+TGG 0.261473 3_1:+64155414 Msa0368060:CDS
GAAATGAATGATCCCTAAAA+TGG 0.290945 3_1:-64153515 None:intergenic
ATTGAAAATAATAACTATAA+TGG 0.300375 3_1:+64155374 Msa0368060:CDS
ATCAATTTCATCCTTACTAA+TGG 0.334411 3_1:+64153658 Msa0368060:CDS
ATCTTCTTCACCTATTGAAA+TGG 0.337725 3_1:+64155046 Msa0368060:CDS
GAGAGTAACTTGTGTGTAAC+TGG 0.345365 3_1:-64154972 None:intergenic
CAAATTGATATTGAAATAGA+AGG 0.351328 3_1:-64153486 None:intergenic
ATGATGACTTTATTAGAAGT+TGG 0.361990 3_1:+64155438 Msa0368060:CDS
ACATTGTGTTCCATTTCAAT+AGG 0.371633 3_1:-64155056 None:intergenic
TTACTAATGGTCAATGTTGC+TGG 0.374011 3_1:+64153671 Msa0368060:CDS
TCATGTGACCAATCAAAATC+AGG 0.374886 3_1:-64155344 None:intergenic
GAATTCATGCAGGGTTGTTA+AGG 0.393211 3_1:+64154018 Msa0368060:intron
TGATGACTTTATTAGAAGTT+GGG 0.395658 3_1:+64155439 Msa0368060:CDS
AAAGAGTGAATCAGAATTCA+AGG 0.398275 3_1:+64155632 Msa0368060:three_prime_UTR
TAATATTAATATGACATTAT+GGG 0.400861 3_1:+64155415 Msa0368060:CDS
ATGATTCTTAATCTCATTGT+CGG 0.409072 3_1:-64154904 None:intergenic
AAGGAGAGACCTGCTAGCTT+AGG 0.410482 3_1:-64153703 None:intergenic
CATGGAACTAGAATTTCATT+TGG 0.414842 3_1:-64155236 None:intergenic
CAGGGAGAAGCAAGTCTTCA+AGG 0.427410 3_1:-64155325 None:intergenic
ACAATGAGATTAAGAATCAT+TGG 0.442443 3_1:+64154907 Msa0368060:CDS
CAACCTTGTTGTGACAAAGT+TGG 0.451424 3_1:+64153592 Msa0368060:CDS
ATCTCATTGTCGGTTCGTCC+CGG 0.454632 3_1:-64154894 None:intergenic
AGAAGGAGATAGAGAGAAAG+AGG 0.455566 3_1:-64153469 None:intergenic
CAAGGATTCAAGAGTGATCA+TGG 0.460334 3_1:+64155493 Msa0368060:CDS
GACAAAGTTGGATTGAAGAA+AGG 0.470330 3_1:+64153604 Msa0368060:CDS
TTATCTTCCTCAGCAGTCCA+TGG 0.477127 3_1:-64153628 None:intergenic
ATGTTAAGAAATTCTACCCT+TGG 0.477178 3_1:-64153537 None:intergenic
TAAAATTGCATCTCATCTAC+CGG 0.481933 3_1:+64154875 Msa0368060:CDS
TGATCATGGATTCAGAATCA+TGG 0.483486 3_1:+64155507 Msa0368060:CDS
AGGAGAGACCTGCTAGCTTA+GGG 0.485466 3_1:-64153702 None:intergenic
TCCATGCTCAACTTGGCAAT+AGG 0.494591 3_1:+64154138 Msa0368060:CDS
AGCAACATTGACCATTAGTA+AGG 0.496175 3_1:-64153669 None:intergenic
ATTGATCTCCATGCTCAACT+TGG 0.503162 3_1:+64154131 Msa0368060:CDS
TTTGTTGTTTCTCCTAGTCA+TGG 0.509215 3_1:+64155770 Msa0368060:three_prime_UTR
TTAGGGATCATTCATTTCCA+AGG 0.511931 3_1:+64153520 Msa0368060:five_prime_UTR
TGATGTTGATGTTGATGTTG+TGG 0.515084 3_1:-64155279 None:intergenic
GATTCAGAATCATGGGCCTA+TGG 0.515199 3_1:+64155515 Msa0368060:CDS
ATACACCTAAACACAAAAGT+TGG 0.517945 3_1:-64155663 None:intergenic
AGAGCTGTCCCTAAGCTAGC+AGG 0.535432 3_1:+64153694 Msa0368060:CDS
AAAATAAGTGTGCCATGACT+AGG 0.545596 3_1:-64155782 None:intergenic
GAAGGAGATAGAGAGAAAGA+GGG 0.552454 3_1:-64153468 None:intergenic
GATCATGGATTCAGAATCAT+GGG 0.553262 3_1:+64155508 Msa0368060:CDS
ACCTATTGCCAAGTTGAGCA+TGG 0.553979 3_1:-64154139 None:intergenic
TTTGTGATCAATGATGATGA+TGG 0.567788 3_1:+64155464 Msa0368060:CDS
TAGGGATCATTCATTTCCAA+GGG 0.577969 3_1:+64153521 Msa0368060:five_prime_UTR
ATGAATGATCCCTAAAATGG+AGG 0.579408 3_1:-64153512 None:intergenic
CATGTGACCAATCAAAATCA+GGG 0.583682 3_1:-64155343 None:intergenic
TGAATGATCCCTAAAATGGA+GGG 0.583802 3_1:-64153511 None:intergenic
CTAAAATCAAAATAATCCAT+AGG 0.591006 3_1:-64155531 None:intergenic
TGAGATGGACAAATTACCTA+AGG 0.599788 3_1:+64154060 Msa0368060:CDS
CATGCAGGGTTGTTAAGGTG+TGG 0.606205 3_1:+64154023 Msa0368060:intron
AATCCAACTTTGTCACAACA+AGG 0.606281 3_1:-64153595 None:intergenic
ATAGGTGAAGAAGATTGTTG+AGG 0.613747 3_1:-64155038 None:intergenic
GATGAAGATGAAGGAACACA+TGG 0.633889 3_1:-64155254 None:intergenic
GTGATCAATGATGATGATGG+TGG 0.644055 3_1:+64155467 Msa0368060:CDS
GAAAGGACCATGGACTGCTG+AGG 0.645584 3_1:+64153621 Msa0368060:CDS
TTGGATTGAAGAAAGGACCA+TGG 0.646456 3_1:+64153611 Msa0368060:CDS
TGATGATGATGGTGGTGACA+AGG 0.652185 3_1:+64155475 Msa0368060:CDS
AAAATTGCATCTCATCTACC+GGG 0.661692 3_1:+64154876 Msa0368060:CDS
GTTGTGGTTGATGAAGATGA+AGG 0.691388 3_1:-64155263 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATAATTTATTATATTT+TGG + chr3_1:64153789-64153808 Msa0368060:intron 0.0%
!!! TAAAATAATTTATTATATTT+TGG + chr3_1:64153789-64153808 Msa0368060:intron 0.0%
!!! TAAAAAAAATGTTTTATTCA+AGG - chr3_1:64154228-64154247 None:intergenic 10.0%
!! TTCTAATTGTAATATATTAT+GGG - chr3_1:64154430-64154449 None:intergenic 10.0%
!!! TTTGTATTTTTTTTTATTCA+AGG + chr3_1:64154503-64154522 Msa0368060:intron 10.0%
!! ATTGAAAATAATAACTATAA+TGG + chr3_1:64155374-64155393 Msa0368060:CDS 10.0%
!! ATAATATTAATATGACATTA+TGG + chr3_1:64155414-64155433 Msa0368060:CDS 10.0%
!! TAATATTAATATGACATTAT+GGG + chr3_1:64155415-64155434 Msa0368060:CDS 10.0%
!!! TAAAAAAAATGTTTTATTCA+AGG - chr3_1:64154228-64154247 None:intergenic 10.0%
!! TTCTAATTGTAATATATTAT+GGG - chr3_1:64154430-64154449 None:intergenic 10.0%
!!! TTTGTATTTTTTTTTATTCA+AGG + chr3_1:64154503-64154522 Msa0368060:intron 10.0%
!! ATTGAAAATAATAACTATAA+TGG + chr3_1:64155374-64155393 Msa0368060:CDS 10.0%
!! ATAATATTAATATGACATTA+TGG + chr3_1:64155414-64155433 Msa0368060:CDS 10.0%
!! TAATATTAATATGACATTAT+GGG + chr3_1:64155415-64155434 Msa0368060:CDS 10.0%
!!! ATTTTTGTTTTACCAAATAT+TGG - chr3_1:64153565-64153584 None:intergenic 15.0%
!! AATATTTGGTAAAACAAAAA+TGG + chr3_1:64153564-64153583 Msa0368060:exon 15.0%
!! ATATTTGGTAAAACAAAAAT+GGG + chr3_1:64153565-64153584 Msa0368060:exon 15.0%
!!! TTTCTTTAACTTCATTATTT+TGG + chr3_1:64153903-64153922 Msa0368060:intron 15.0%
!!! ATGAATTCATATCAATTTTT+AGG - chr3_1:64154006-64154025 None:intergenic 15.0%
!! CTTCTAATTGTAATATATTA+TGG - chr3_1:64154431-64154450 None:intergenic 15.0%
!! CATAATATATTACAATTAGA+AGG + chr3_1:64154429-64154448 Msa0368060:intron 15.0%
!! AAAAGAAAAAAAAAAAGACT+TGG - chr3_1:64154472-64154491 None:intergenic 15.0%
!!! TTAGAAATGATTTTATCATA+AGG - chr3_1:64154713-64154732 None:intergenic 15.0%
!!! CATTTCTAAAATAAATAACT+AGG + chr3_1:64154724-64154743 Msa0368060:intron 15.0%
!! ATTACTTTATTACTTTATAG+TGG + chr3_1:64154747-64154766 Msa0368060:intron 15.0%
!! ATTTCATTTGGTATTATTAT+TGG - chr3_1:64155227-64155246 None:intergenic 15.0%
!! TTTATCATAATGTAAAAAGT+TGG - chr3_1:64155714-64155733 None:intergenic 15.0%
!!! ATTTTTGTTTTACCAAATAT+TGG - chr3_1:64153565-64153584 None:intergenic 15.0%
!! AATATTTGGTAAAACAAAAA+TGG + chr3_1:64153564-64153583 Msa0368060:exon 15.0%
!! ATATTTGGTAAAACAAAAAT+GGG + chr3_1:64153565-64153584 Msa0368060:exon 15.0%
!!! TTTCTTTAACTTCATTATTT+TGG + chr3_1:64153903-64153922 Msa0368060:intron 15.0%
!!! ATGAATTCATATCAATTTTT+AGG - chr3_1:64154006-64154025 None:intergenic 15.0%
!! CTTCTAATTGTAATATATTA+TGG - chr3_1:64154431-64154450 None:intergenic 15.0%
!! CATAATATATTACAATTAGA+AGG + chr3_1:64154429-64154448 Msa0368060:intron 15.0%
!! AAAAGAAAAAAAAAAAGACT+TGG - chr3_1:64154472-64154491 None:intergenic 15.0%
!!! TTAGAAATGATTTTATCATA+AGG - chr3_1:64154713-64154732 None:intergenic 15.0%
!!! CATTTCTAAAATAAATAACT+AGG + chr3_1:64154724-64154743 Msa0368060:intron 15.0%
!! ATTACTTTATTACTTTATAG+TGG + chr3_1:64154747-64154766 Msa0368060:intron 15.0%
!! ATTTCATTTGGTATTATTAT+TGG - chr3_1:64155227-64155246 None:intergenic 15.0%
!! TTTATCATAATGTAAAAAGT+TGG - chr3_1:64155714-64155733 None:intergenic 15.0%
!! CAAATTGATATTGAAATAGA+AGG - chr3_1:64153489-64153508 None:intergenic 20.0%
!! TTCTTAACATTTCCAATATT+TGG + chr3_1:64153550-64153569 Msa0368060:five_prime_UTR 20.0%
!!! ATTTTCTTGTCTTTGAAAAA+TGG - chr3_1:64153836-64153855 None:intergenic 20.0%
!! ATCAGAATATGAAGAAAAAA+TGG + chr3_1:64154106-64154125 Msa0368060:CDS 20.0%
!! CTCTATTAAAATATTAGACT+AGG + chr3_1:64154272-64154291 Msa0368060:intron 20.0%
!! TTTATTCAAGGTAAAAGAAA+AGG + chr3_1:64154515-64154534 Msa0368060:intron 20.0%
!! CTAAAATCAAAATAATCCAT+AGG - chr3_1:64155534-64155553 None:intergenic 20.0%
!!! TTTTCTTAACATTGATCATA+TGG + chr3_1:64155572-64155591 Msa0368060:three_prime_UTR 20.0%
!! CTTACTTGTAATGTTATTAT+AGG + chr3_1:64155595-64155614 Msa0368060:three_prime_UTR 20.0%
!! CAAATTGATATTGAAATAGA+AGG - chr3_1:64153489-64153508 None:intergenic 20.0%
!! TTCTTAACATTTCCAATATT+TGG + chr3_1:64153550-64153569 Msa0368060:five_prime_UTR 20.0%
!!! ATTTTCTTGTCTTTGAAAAA+TGG - chr3_1:64153836-64153855 None:intergenic 20.0%
!! ATCAGAATATGAAGAAAAAA+TGG + chr3_1:64154106-64154125 Msa0368060:CDS 20.0%
!! CTCTATTAAAATATTAGACT+AGG + chr3_1:64154272-64154291 Msa0368060:intron 20.0%
!! TTTATTCAAGGTAAAAGAAA+AGG + chr3_1:64154515-64154534 Msa0368060:intron 20.0%
!! CTAAAATCAAAATAATCCAT+AGG - chr3_1:64155534-64155553 None:intergenic 20.0%
!!! TTTTCTTAACATTGATCATA+TGG + chr3_1:64155572-64155591 Msa0368060:three_prime_UTR 20.0%
!! CTTACTTGTAATGTTATTAT+AGG + chr3_1:64155595-64155614 Msa0368060:three_prime_UTR 20.0%
! ATCAATTTCATCCTTACTAA+TGG + chr3_1:64153658-64153677 Msa0368060:CDS 25.0%
! AATGATCTTATTGCAATGAA+AGG - chr3_1:64153725-64153744 None:intergenic 25.0%
! ACAAGAAAATCAAGCATTTA+AGG + chr3_1:64153846-64153865 Msa0368060:intron 25.0%
!!! ACTTCATTATTTTGGTGAAA+TGG + chr3_1:64153911-64153930 Msa0368060:intron 25.0%
!!! GTTTGCATTTTTAATTGAAG+TGG + chr3_1:64153948-64153967 Msa0368060:intron 25.0%
!!! TCATATCAATTTTTAGGCTA+TGG - chr3_1:64154000-64154019 None:intergenic 25.0%
! AAATTGATATGAATTCATGC+AGG + chr3_1:64154008-64154027 Msa0368060:intron 25.0%
! AATTGATATGAATTCATGCA+GGG + chr3_1:64154009-64154028 Msa0368060:intron 25.0%
!!! TTTTAAGATATCTTCCTAAG+TGG + chr3_1:64154662-64154681 Msa0368060:intron 25.0%
!! ATTTTATCATAAGGTCCAAA+AGG - chr3_1:64154704-64154723 None:intergenic 25.0%
! ATGATTCTTAATCTCATTGT+CGG - chr3_1:64154907-64154926 None:intergenic 25.0%
! ACAATGAGATTAAGAATCAT+TGG + chr3_1:64154907-64154926 Msa0368060:CDS 25.0%
! AAAGAAAAAGCTCAAGAAAA+TGG + chr3_1:64154941-64154960 Msa0368060:CDS 25.0%
! AAGAAAAAGCTCAAGAAAAT+GGG + chr3_1:64154942-64154961 Msa0368060:CDS 25.0%
! ATGATGACTTTATTAGAAGT+TGG + chr3_1:64155438-64155457 Msa0368060:CDS 25.0%
! TGATGACTTTATTAGAAGTT+GGG + chr3_1:64155439-64155458 Msa0368060:CDS 25.0%
!! ATATACCAACTTTTGTGTTT+AGG + chr3_1:64155658-64155677 Msa0368060:three_prime_UTR 25.0%
! AAAAGTTGGAAAAAGAAAAG+TGG - chr3_1:64155700-64155719 None:intergenic 25.0%
! ATCAATTTCATCCTTACTAA+TGG + chr3_1:64153658-64153677 Msa0368060:CDS 25.0%
! AATGATCTTATTGCAATGAA+AGG - chr3_1:64153725-64153744 None:intergenic 25.0%
! ACAAGAAAATCAAGCATTTA+AGG + chr3_1:64153846-64153865 Msa0368060:intron 25.0%
!!! ACTTCATTATTTTGGTGAAA+TGG + chr3_1:64153911-64153930 Msa0368060:intron 25.0%
!!! GTTTGCATTTTTAATTGAAG+TGG + chr3_1:64153948-64153967 Msa0368060:intron 25.0%
!!! TCATATCAATTTTTAGGCTA+TGG - chr3_1:64154000-64154019 None:intergenic 25.0%
! AAATTGATATGAATTCATGC+AGG + chr3_1:64154008-64154027 Msa0368060:intron 25.0%
! AATTGATATGAATTCATGCA+GGG + chr3_1:64154009-64154028 Msa0368060:intron 25.0%
!!! TTTTAAGATATCTTCCTAAG+TGG + chr3_1:64154662-64154681 Msa0368060:intron 25.0%
!! ATTTTATCATAAGGTCCAAA+AGG - chr3_1:64154704-64154723 None:intergenic 25.0%
! ATGATTCTTAATCTCATTGT+CGG - chr3_1:64154907-64154926 None:intergenic 25.0%
! ACAATGAGATTAAGAATCAT+TGG + chr3_1:64154907-64154926 Msa0368060:CDS 25.0%
! AAAGAAAAAGCTCAAGAAAA+TGG + chr3_1:64154941-64154960 Msa0368060:CDS 25.0%
! AAGAAAAAGCTCAAGAAAAT+GGG + chr3_1:64154942-64154961 Msa0368060:CDS 25.0%
! ATGATGACTTTATTAGAAGT+TGG + chr3_1:64155438-64155457 Msa0368060:CDS 25.0%
! TGATGACTTTATTAGAAGTT+GGG + chr3_1:64155439-64155458 Msa0368060:CDS 25.0%
!! ATATACCAACTTTTGTGTTT+AGG + chr3_1:64155658-64155677 Msa0368060:three_prime_UTR 25.0%
! AAAAGTTGGAAAAAGAAAAG+TGG - chr3_1:64155700-64155719 None:intergenic 25.0%
! AATTTGAACCCTCCATTTTA+GGG + chr3_1:64153503-64153522 Msa0368060:five_prime_UTR 30.0%
GAAATGAATGATCCCTAAAA+TGG - chr3_1:64153518-64153537 None:intergenic 30.0%
ATGTTAAGAAATTCTACCCT+TGG - chr3_1:64153540-64153559 None:intergenic 30.0%
! CTGATAAAAGTCCTCTTTTT+AGG - chr3_1:64154091-64154110 None:intergenic 30.0%
TTCATCACAAAAAGAAGACA+TGG + chr3_1:64154403-64154422 Msa0368060:intron 30.0%
! TCTATAAAGTTGACTCCAAA+TGG + chr3_1:64154557-64154576 Msa0368060:intron 30.0%
! CTATAAAGTTGACTCCAAAT+GGG + chr3_1:64154558-64154577 Msa0368060:intron 30.0%
CAATATTTACGATTCCCATT+TGG - chr3_1:64154575-64154594 None:intergenic 30.0%
GAAAGACATGTTTGTCTTAT+AGG + chr3_1:64154605-64154624 Msa0368060:intron 30.0%
CAAAAGGAATAATGACTTCA+TGG - chr3_1:64154688-64154707 None:intergenic 30.0%
! CATGAAGTCATTATTCCTTT+TGG + chr3_1:64154686-64154705 Msa0368060:intron 30.0%
TAAAATTGCATCTCATCTAC+CGG + chr3_1:64154875-64154894 Msa0368060:CDS 30.0%
ATCTTCTTCACCTATTGAAA+TGG + chr3_1:64155046-64155065 Msa0368060:CDS 30.0%
ACATTGTGTTCCATTTCAAT+AGG - chr3_1:64155059-64155078 None:intergenic 30.0%
!! CAAAAAGTGGTGTCATAATT+TGG - chr3_1:64155160-64155179 None:intergenic 30.0%
CATGGAACTAGAATTTCATT+TGG - chr3_1:64155239-64155258 None:intergenic 30.0%
! TTTGTGATCAATGATGATGA+TGG + chr3_1:64155464-64155483 Msa0368060:CDS 30.0%
CTGATTCACTCTTTATTCTT+TGG - chr3_1:64155626-64155645 None:intergenic 30.0%
AAAGAGTGAATCAGAATTCA+AGG + chr3_1:64155632-64155651 Msa0368060:three_prime_UTR 30.0%
ATACACCTAAACACAAAAGT+TGG - chr3_1:64155666-64155685 None:intergenic 30.0%
! AATTTGAACCCTCCATTTTA+GGG + chr3_1:64153503-64153522 Msa0368060:five_prime_UTR 30.0%
GAAATGAATGATCCCTAAAA+TGG - chr3_1:64153518-64153537 None:intergenic 30.0%
ATGTTAAGAAATTCTACCCT+TGG - chr3_1:64153540-64153559 None:intergenic 30.0%
! CTGATAAAAGTCCTCTTTTT+AGG - chr3_1:64154091-64154110 None:intergenic 30.0%
TTCATCACAAAAAGAAGACA+TGG + chr3_1:64154403-64154422 Msa0368060:intron 30.0%
! TCTATAAAGTTGACTCCAAA+TGG + chr3_1:64154557-64154576 Msa0368060:intron 30.0%
! CTATAAAGTTGACTCCAAAT+GGG + chr3_1:64154558-64154577 Msa0368060:intron 30.0%
CAATATTTACGATTCCCATT+TGG - chr3_1:64154575-64154594 None:intergenic 30.0%
GAAAGACATGTTTGTCTTAT+AGG + chr3_1:64154605-64154624 Msa0368060:intron 30.0%
CAAAAGGAATAATGACTTCA+TGG - chr3_1:64154688-64154707 None:intergenic 30.0%
! CATGAAGTCATTATTCCTTT+TGG + chr3_1:64154686-64154705 Msa0368060:intron 30.0%
TAAAATTGCATCTCATCTAC+CGG + chr3_1:64154875-64154894 Msa0368060:CDS 30.0%
ATCTTCTTCACCTATTGAAA+TGG + chr3_1:64155046-64155065 Msa0368060:CDS 30.0%
ACATTGTGTTCCATTTCAAT+AGG - chr3_1:64155059-64155078 None:intergenic 30.0%
!! CAAAAAGTGGTGTCATAATT+TGG - chr3_1:64155160-64155179 None:intergenic 30.0%
CATGGAACTAGAATTTCATT+TGG - chr3_1:64155239-64155258 None:intergenic 30.0%
! TTTGTGATCAATGATGATGA+TGG + chr3_1:64155464-64155483 Msa0368060:CDS 30.0%
CTGATTCACTCTTTATTCTT+TGG - chr3_1:64155626-64155645 None:intergenic 30.0%
AAAGAGTGAATCAGAATTCA+AGG + chr3_1:64155632-64155651 Msa0368060:three_prime_UTR 30.0%
ATACACCTAAACACAAAAGT+TGG - chr3_1:64155666-64155685 None:intergenic 30.0%
! CAATTTGAACCCTCCATTTT+AGG + chr3_1:64153502-64153521 Msa0368060:five_prime_UTR 35.0%
TGAATGATCCCTAAAATGGA+GGG - chr3_1:64153514-64153533 None:intergenic 35.0%
ATGAATGATCCCTAAAATGG+AGG - chr3_1:64153515-64153534 None:intergenic 35.0%
TTAGGGATCATTCATTTCCA+AGG + chr3_1:64153520-64153539 Msa0368060:five_prime_UTR 35.0%
TAGGGATCATTCATTTCCAA+GGG + chr3_1:64153521-64153540 Msa0368060:five_prime_UTR 35.0%
AATCCAACTTTGTCACAACA+AGG - chr3_1:64153598-64153617 None:intergenic 35.0%
GACAAAGTTGGATTGAAGAA+AGG + chr3_1:64153604-64153623 Msa0368060:CDS 35.0%
AGCAACATTGACCATTAGTA+AGG - chr3_1:64153672-64153691 None:intergenic 35.0%
TTACTAATGGTCAATGTTGC+TGG + chr3_1:64153671-64153690 Msa0368060:CDS 35.0%
TGAGATGGACAAATTACCTA+AGG + chr3_1:64154060-64154079 Msa0368060:CDS 35.0%
!!! AAAAGTCCTCTTTTTAGGTC+TGG - chr3_1:64154086-64154105 None:intergenic 35.0%
AACAGAGGAAACAGAGTAAA+TGG - chr3_1:64154176-64154195 None:intergenic 35.0%
ATGCAAAACAGAGAAAACAG+AGG - chr3_1:64154191-64154210 None:intergenic 35.0%
!!! TCGTTTTTTTCTCATGCAGA+TGG + chr3_1:64154850-64154869 Msa0368060:intron 35.0%
AAAATTGCATCTCATCTACC+GGG + chr3_1:64154876-64154895 Msa0368060:CDS 35.0%
ATAGGTGAAGAAGATTGTTG+AGG - chr3_1:64155041-64155060 None:intergenic 35.0%
GATGACTCAAATGATGTTTC+TGG - chr3_1:64155110-64155129 None:intergenic 35.0%
!!! ACCACTTTTTGACTCAACAA+TGG + chr3_1:64155169-64155188 Msa0368060:CDS 35.0%
TCCATTGTTGAGTCAAAAAG+TGG - chr3_1:64155173-64155192 None:intergenic 35.0%
TGATGTTGATGTTGATGTTG+TGG - chr3_1:64155282-64155301 None:intergenic 35.0%
CATGTGACCAATCAAAATCA+GGG - chr3_1:64155346-64155365 None:intergenic 35.0%
TCATGTGACCAATCAAAATC+AGG - chr3_1:64155347-64155366 None:intergenic 35.0%
TGATCATGGATTCAGAATCA+TGG + chr3_1:64155507-64155526 Msa0368060:CDS 35.0%
GATCATGGATTCAGAATCAT+GGG + chr3_1:64155508-64155527 Msa0368060:CDS 35.0%
!! TTTGTTGTTTCTCCTAGTCA+TGG + chr3_1:64155770-64155789 Msa0368060:three_prime_UTR 35.0%
AAAATAAGTGTGCCATGACT+AGG - chr3_1:64155785-64155804 None:intergenic 35.0%
! CAATTTGAACCCTCCATTTT+AGG + chr3_1:64153502-64153521 Msa0368060:five_prime_UTR 35.0%
TGAATGATCCCTAAAATGGA+GGG - chr3_1:64153514-64153533 None:intergenic 35.0%
ATGAATGATCCCTAAAATGG+AGG - chr3_1:64153515-64153534 None:intergenic 35.0%
TTAGGGATCATTCATTTCCA+AGG + chr3_1:64153520-64153539 Msa0368060:five_prime_UTR 35.0%
TAGGGATCATTCATTTCCAA+GGG + chr3_1:64153521-64153540 Msa0368060:five_prime_UTR 35.0%
AATCCAACTTTGTCACAACA+AGG - chr3_1:64153598-64153617 None:intergenic 35.0%
GACAAAGTTGGATTGAAGAA+AGG + chr3_1:64153604-64153623 Msa0368060:CDS 35.0%
AGCAACATTGACCATTAGTA+AGG - chr3_1:64153672-64153691 None:intergenic 35.0%
TTACTAATGGTCAATGTTGC+TGG + chr3_1:64153671-64153690 Msa0368060:CDS 35.0%
TGAGATGGACAAATTACCTA+AGG + chr3_1:64154060-64154079 Msa0368060:CDS 35.0%
!!! AAAAGTCCTCTTTTTAGGTC+TGG - chr3_1:64154086-64154105 None:intergenic 35.0%
AACAGAGGAAACAGAGTAAA+TGG - chr3_1:64154176-64154195 None:intergenic 35.0%
ATGCAAAACAGAGAAAACAG+AGG - chr3_1:64154191-64154210 None:intergenic 35.0%
!!! TCGTTTTTTTCTCATGCAGA+TGG + chr3_1:64154850-64154869 Msa0368060:intron 35.0%
AAAATTGCATCTCATCTACC+GGG + chr3_1:64154876-64154895 Msa0368060:CDS 35.0%
ATAGGTGAAGAAGATTGTTG+AGG - chr3_1:64155041-64155060 None:intergenic 35.0%
GATGACTCAAATGATGTTTC+TGG - chr3_1:64155110-64155129 None:intergenic 35.0%
!!! ACCACTTTTTGACTCAACAA+TGG + chr3_1:64155169-64155188 Msa0368060:CDS 35.0%
TCCATTGTTGAGTCAAAAAG+TGG - chr3_1:64155173-64155192 None:intergenic 35.0%
TGATGTTGATGTTGATGTTG+TGG - chr3_1:64155282-64155301 None:intergenic 35.0%
CATGTGACCAATCAAAATCA+GGG - chr3_1:64155346-64155365 None:intergenic 35.0%
TCATGTGACCAATCAAAATC+AGG - chr3_1:64155347-64155366 None:intergenic 35.0%
TGATCATGGATTCAGAATCA+TGG + chr3_1:64155507-64155526 Msa0368060:CDS 35.0%
GATCATGGATTCAGAATCAT+GGG + chr3_1:64155508-64155527 Msa0368060:CDS 35.0%
!! TTTGTTGTTTCTCCTAGTCA+TGG + chr3_1:64155770-64155789 Msa0368060:three_prime_UTR 35.0%
AAAATAAGTGTGCCATGACT+AGG - chr3_1:64155785-64155804 None:intergenic 35.0%
GAAGGAGATAGAGAGAAAGA+GGG - chr3_1:64153471-64153490 None:intergenic 40.0%
AGAAGGAGATAGAGAGAAAG+AGG - chr3_1:64153472-64153491 None:intergenic 40.0%
! CAACCTTGTTGTGACAAAGT+TGG + chr3_1:64153592-64153611 Msa0368060:CDS 40.0%
TTGGATTGAAGAAAGGACCA+TGG + chr3_1:64153611-64153630 Msa0368060:CDS 40.0%
GAATTCATGCAGGGTTGTTA+AGG + chr3_1:64154018-64154037 Msa0368060:intron 40.0%
TAAGGTGTGGAAAAAGTTGC+AGG + chr3_1:64154036-64154055 Msa0368060:CDS 40.0%
! GAAAAAGTTGCAGGTTGAGA+TGG + chr3_1:64154045-64154064 Msa0368060:CDS 40.0%
ATTGATCTCCATGCTCAACT+TGG + chr3_1:64154131-64154150 Msa0368060:CDS 40.0%
TAATGACTTCATGGCCACTT+AGG - chr3_1:64154679-64154698 None:intergenic 40.0%
! GAGAGTAACTTGTGTGTAAC+TGG - chr3_1:64154975-64154994 None:intergenic 40.0%
GATGAAGATGAAGGAACACA+TGG - chr3_1:64155257-64155276 None:intergenic 40.0%
!! GTTGTGGTTGATGAAGATGA+AGG - chr3_1:64155266-64155285 None:intergenic 40.0%
!! TGCTTCTCCCTGATTTTGAT+TGG + chr3_1:64155336-64155355 Msa0368060:CDS 40.0%
!! GTGATCAATGATGATGATGG+TGG + chr3_1:64155467-64155486 Msa0368060:CDS 40.0%
CAAGGATTCAAGAGTGATCA+TGG + chr3_1:64155493-64155512 Msa0368060:CDS 40.0%
GAAGGAGATAGAGAGAAAGA+GGG - chr3_1:64153471-64153490 None:intergenic 40.0%
AGAAGGAGATAGAGAGAAAG+AGG - chr3_1:64153472-64153491 None:intergenic 40.0%
! CAACCTTGTTGTGACAAAGT+TGG + chr3_1:64153592-64153611 Msa0368060:CDS 40.0%
TTGGATTGAAGAAAGGACCA+TGG + chr3_1:64153611-64153630 Msa0368060:CDS 40.0%
GAATTCATGCAGGGTTGTTA+AGG + chr3_1:64154018-64154037 Msa0368060:intron 40.0%
TAAGGTGTGGAAAAAGTTGC+AGG + chr3_1:64154036-64154055 Msa0368060:CDS 40.0%
! GAAAAAGTTGCAGGTTGAGA+TGG + chr3_1:64154045-64154064 Msa0368060:CDS 40.0%
ATTGATCTCCATGCTCAACT+TGG + chr3_1:64154131-64154150 Msa0368060:CDS 40.0%
TAATGACTTCATGGCCACTT+AGG - chr3_1:64154679-64154698 None:intergenic 40.0%
! GAGAGTAACTTGTGTGTAAC+TGG - chr3_1:64154975-64154994 None:intergenic 40.0%
GATGAAGATGAAGGAACACA+TGG - chr3_1:64155257-64155276 None:intergenic 40.0%
!! GTTGTGGTTGATGAAGATGA+AGG - chr3_1:64155266-64155285 None:intergenic 40.0%
!! TGCTTCTCCCTGATTTTGAT+TGG + chr3_1:64155336-64155355 Msa0368060:CDS 40.0%
!! GTGATCAATGATGATGATGG+TGG + chr3_1:64155467-64155486 Msa0368060:CDS 40.0%
CAAGGATTCAAGAGTGATCA+TGG + chr3_1:64155493-64155512 Msa0368060:CDS 40.0%
TTATCTTCCTCAGCAGTCCA+TGG - chr3_1:64153631-64153650 None:intergenic 45.0%
!!! CTCTTTTTAGGTCTGGCCTT+AGG - chr3_1:64154079-64154098 None:intergenic 45.0%
CTAAGGCCAGACCTAAAAAG+AGG + chr3_1:64154077-64154096 Msa0368060:CDS 45.0%
TCCATGCTCAACTTGGCAAT+AGG + chr3_1:64154138-64154157 Msa0368060:CDS 45.0%
! ACCTATTGCCAAGTTGAGCA+TGG - chr3_1:64154142-64154161 None:intergenic 45.0%
!! TGATGATGATGGTGGTGACA+AGG + chr3_1:64155475-64155494 Msa0368060:CDS 45.0%
GATTCAGAATCATGGGCCTA+TGG + chr3_1:64155515-64155534 Msa0368060:CDS 45.0%
TTATCTTCCTCAGCAGTCCA+TGG - chr3_1:64153631-64153650 None:intergenic 45.0%
!!! CTCTTTTTAGGTCTGGCCTT+AGG - chr3_1:64154079-64154098 None:intergenic 45.0%
CTAAGGCCAGACCTAAAAAG+AGG + chr3_1:64154077-64154096 Msa0368060:CDS 45.0%
TCCATGCTCAACTTGGCAAT+AGG + chr3_1:64154138-64154157 Msa0368060:CDS 45.0%
! ACCTATTGCCAAGTTGAGCA+TGG - chr3_1:64154142-64154161 None:intergenic 45.0%
!! TGATGATGATGGTGGTGACA+AGG + chr3_1:64155475-64155494 Msa0368060:CDS 45.0%
GATTCAGAATCATGGGCCTA+TGG + chr3_1:64155515-64155534 Msa0368060:CDS 45.0%
! AGGAGAGACCTGCTAGCTTA+GGG - chr3_1:64153705-64153724 None:intergenic 50.0%
! AAGGAGAGACCTGCTAGCTT+AGG - chr3_1:64153706-64153725 None:intergenic 50.0%
CATGCAGGGTTGTTAAGGTG+TGG + chr3_1:64154023-64154042 Msa0368060:intron 50.0%
!! ATCTCATTGTCGGTTCGTCC+CGG - chr3_1:64154897-64154916 None:intergenic 50.0%
CAGGGAGAAGCAAGTCTTCA+AGG - chr3_1:64155328-64155347 None:intergenic 50.0%
! AGGAGAGACCTGCTAGCTTA+GGG - chr3_1:64153705-64153724 None:intergenic 50.0%
! AAGGAGAGACCTGCTAGCTT+AGG - chr3_1:64153706-64153725 None:intergenic 50.0%
CATGCAGGGTTGTTAAGGTG+TGG + chr3_1:64154023-64154042 Msa0368060:intron 50.0%
!! ATCTCATTGTCGGTTCGTCC+CGG - chr3_1:64154897-64154916 None:intergenic 50.0%
CAGGGAGAAGCAAGTCTTCA+AGG - chr3_1:64155328-64155347 None:intergenic 50.0%
! GAAAGGACCATGGACTGCTG+AGG + chr3_1:64153621-64153640 Msa0368060:CDS 55.0%
AGAGCTGTCCCTAAGCTAGC+AGG + chr3_1:64153694-64153713 Msa0368060:CDS 55.0%
! GAAAGGACCATGGACTGCTG+AGG + chr3_1:64153621-64153640 Msa0368060:CDS 55.0%
AGAGCTGTCCCTAAGCTAGC+AGG + chr3_1:64153694-64153713 Msa0368060:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 64153407 64155807 64153407 ID=Msa0368060;Name=Msa0368060
chr3_1 mRNA 64153407 64155807 64153407 ID=Msa0368060-mRNA-1;Parent=Msa0368060;Name=Msa0368060-mRNA-1;_AED=0.12;_eAED=0.12;_QI=176|1|1|1|1|1|3|260|313
chr3_1 exon 64153407 64153715 64153407 ID=Msa0368060-mRNA-1:exon:12811;Parent=Msa0368060-mRNA-1
chr3_1 exon 64154030 64154159 64154030 ID=Msa0368060-mRNA-1:exon:12812;Parent=Msa0368060-mRNA-1
chr3_1 exon 64154869 64155807 64154869 ID=Msa0368060-mRNA-1:exon:12813;Parent=Msa0368060-mRNA-1
chr3_1 five_prime_UTR 64153407 64153582 64153407 ID=Msa0368060-mRNA-1:five_prime_utr;Parent=Msa0368060-mRNA-1
chr3_1 CDS 64153583 64153715 64153583 ID=Msa0368060-mRNA-1:cds;Parent=Msa0368060-mRNA-1
chr3_1 CDS 64154030 64154159 64154030 ID=Msa0368060-mRNA-1:cds;Parent=Msa0368060-mRNA-1
chr3_1 CDS 64154869 64155547 64154869 ID=Msa0368060-mRNA-1:cds;Parent=Msa0368060-mRNA-1
chr3_1 three_prime_UTR 64155548 64155807 64155548 ID=Msa0368060-mRNA-1:three_prime_utr;Parent=Msa0368060-mRNA-1
Gene Sequence

>Msa0368060

ATGGGAAGACAACCTTGTTGTGACAAAGTTGGATTGAAGAAAGGACCATGGACTGCTGAGGAAGATAAAAAGCTCATCAATTTCATCCTTACTAATGGTCAATGTTGCTGGAGAGCTGTCCCTAAGCTAGCAGGGTTGTTAAGGTGTGGAAAAAGTTGCAGGTTGAGATGGACAAATTACCTAAGGCCAGACCTAAAAAGAGGACTTTTATCAGAATATGAAGAAAAAATGGTCATTGATCTCCATGCTCAACTTGGCAATAGATGGTCTAAAATTGCATCTCATCTACCGGGACGAACCGACAATGAGATTAAGAATCATTGGAATACTCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCAGTTACACACAAGTTACTCTCTAATGCAACTATTGAGCAAACTCAAACACAATCTGAACAAGAACCTCAACAATCTTCTTCACCTATTGAAATGGAACACAATGTTGAATTTGAGAATGACAAAAACAAAAAACCAGAAACATCATTTGAGTCATCAACAATAACTGAAGCTAAAGAACAAGACCAAATTATGACACCACTTTTTGACTCAACAATGGAACTAATGAATGAGTTATTCACTGAAGAAGTTCCAATAATAATACCAAATGAAATTCTAGTTCCATGTGTTCCTTCATCTTCATCAACCACAACATCAACATCAACATCATCAACTTCAAATTCATCTAACTTCCTTGAAGACTTGCTTCTCCCTGATTTTGATTGGTCACATGATAATAATATTGAAAATAATAACTATAATGGAAATAGTGACAATAATAATAATATTAATATGACATTATGGGATGATGACTTTATTAGAAGTTGGGATTTTGTGATCAATGATGATGATGGTGGTGACAAGGATTCAAGAGTGATCATGGATTCAGAATCATGGGCCTATGGATTATTTTGA
Protein sequence

>Msa0368060

MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKLLSNATIEQTQTQSEQEPQQSSSPIEMEHNVEFENDKNKKPETSFESSTITEAKEQDQIMTPLFDSTMELMNELFTEEVPIIIPNEILVPCVPSSSSTTTSTSTSSTSNSSNFLEDLLLPDFDWSHDNNIENNNYNGNSDNNNNINMTLWDDDFIRSWDFVINDDDGGDKDSRVIMDSESWAYGLF*