Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371960 | XP_003601381.1 | 96.078 | 255 | 10 | 0 | 1 | 255 | 1 | 255 | 4.12e-178 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371960 | sp|P46667|ATHB5_ARATH | 53.571 | 168 | 65 | 4 | 1 | 155 | 1 | 168 | 4.85e-48 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371960 | G7J6Q0 | 96.078 | 255 | 10 | 0 | 1 | 255 | 1 | 255 | 1.97e-178 | 499 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0371960 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0371960 | Msa0512230 | 0.943155 | 2.002637e-102 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371960 | MtrunA17_Chr3g0119291 | 96.078 | 255 | 10 | 0 | 1 | 255 | 1 | 255 | 0.0 | 499 |
| Msa0371960 | MtrunA17_Chr8g0381741 | 37.785 | 307 | 134 | 7 | 1 | 255 | 1 | 302 | 4.13e-54 | 177 |
| Msa0371960 | MtrunA17_Chr3g0123691 | 39.189 | 296 | 136 | 7 | 1 | 255 | 1 | 293 | 3.02e-48 | 161 |
| Msa0371960 | MtrunA17_Chr6g0453021 | 46.465 | 198 | 91 | 4 | 42 | 238 | 82 | 265 | 3.81e-41 | 142 |
| Msa0371960 | MtrunA17_Chr8g0362151 | 57.724 | 123 | 51 | 1 | 46 | 168 | 64 | 185 | 1.74e-38 | 135 |
| Msa0371960 | MtrunA17_Chr5g0416391 | 57.600 | 125 | 52 | 1 | 44 | 168 | 62 | 185 | 3.30e-38 | 135 |
| Msa0371960 | MtrunA17_Chr5g0415941 | 60.000 | 110 | 44 | 0 | 47 | 156 | 75 | 184 | 5.66e-37 | 132 |
| Msa0371960 | MtrunA17_Chr8g0362751 | 60.577 | 104 | 41 | 0 | 59 | 162 | 89 | 192 | 9.58e-35 | 126 |
| Msa0371960 | MtrunA17_Chr6g0450991 | 64.286 | 98 | 35 | 0 | 58 | 155 | 66 | 163 | 1.91e-34 | 125 |
| Msa0371960 | MtrunA17_Chr4g0060031 | 61.905 | 105 | 40 | 0 | 58 | 162 | 94 | 198 | 3.84e-34 | 125 |
| Msa0371960 | MtrunA17_Chr7g0217111 | 51.938 | 129 | 58 | 2 | 47 | 174 | 71 | 196 | 6.39e-33 | 120 |
| Msa0371960 | MtrunA17_Chr7g0265521 | 47.761 | 134 | 68 | 2 | 52 | 185 | 56 | 187 | 5.25e-30 | 112 |
| Msa0371960 | MtrunA17_Chr1g0179581 | 57.831 | 83 | 35 | 0 | 58 | 140 | 27 | 109 | 6.90e-26 | 97.8 |
| Msa0371960 | MtrunA17_Chr8g0346251 | 51.163 | 86 | 42 | 0 | 66 | 151 | 48 | 133 | 4.03e-24 | 97.1 |
| Msa0371960 | MtrunA17_Chr3g0127511 | 48.352 | 91 | 47 | 0 | 61 | 151 | 40 | 130 | 2.77e-23 | 94.7 |
| Msa0371960 | MtrunA17_Chr4g0054421 | 47.748 | 111 | 49 | 2 | 43 | 153 | 113 | 214 | 1.13e-20 | 88.2 |
| Msa0371960 | MtrunA17_Chr4g0055851 | 46.667 | 105 | 49 | 1 | 49 | 153 | 110 | 207 | 3.61e-20 | 87.0 |
| Msa0371960 | MtrunA17_Chr5g0403701 | 44.068 | 118 | 54 | 1 | 51 | 168 | 45 | 150 | 1.78e-19 | 84.0 |
| Msa0371960 | MtrunA17_Chr5g0403691 | 44.167 | 120 | 58 | 3 | 51 | 168 | 45 | 157 | 7.49e-19 | 82.4 |
| Msa0371960 | MtrunA17_Chr1g0175651 | 48.113 | 106 | 46 | 2 | 48 | 153 | 145 | 241 | 1.79e-18 | 82.8 |
| Msa0371960 | MtrunA17_Chr2g0308611 | 42.222 | 135 | 58 | 3 | 19 | 153 | 173 | 287 | 2.13e-18 | 83.2 |
| Msa0371960 | MtrunA17_Chr7g0258831 | 47.170 | 106 | 47 | 2 | 48 | 153 | 151 | 247 | 2.32e-18 | 82.4 |
| Msa0371960 | MtrunA17_Chr4g0071411 | 39.130 | 138 | 74 | 2 | 19 | 153 | 45 | 175 | 7.52e-18 | 79.7 |
| Msa0371960 | MtrunA17_Chr5g0399491 | 42.857 | 133 | 56 | 3 | 21 | 152 | 112 | 225 | 1.86e-17 | 80.1 |
| Msa0371960 | MtrunA17_Chr5g0400781 | 46.226 | 106 | 49 | 2 | 48 | 153 | 113 | 210 | 3.40e-17 | 79.0 |
| Msa0371960 | MtrunA17_Chr1g0151971 | 46.316 | 95 | 44 | 1 | 59 | 153 | 130 | 217 | 3.66e-16 | 76.3 |
| Msa0371960 | MtrunA17_Chr8g0335131 | 43.363 | 113 | 59 | 2 | 59 | 170 | 146 | 254 | 3.70e-16 | 76.6 |
| Msa0371960 | MtrunA17_Chr3g0135331 | 39.130 | 138 | 67 | 4 | 57 | 186 | 143 | 271 | 1.08e-14 | 72.4 |
| Msa0371960 | MtrunA17_Chr4g0044091 | 44.211 | 95 | 46 | 1 | 59 | 153 | 65 | 152 | 1.63e-14 | 70.1 |
| Msa0371960 | MtrunA17_Chr2g0299031 | 44.211 | 95 | 46 | 1 | 59 | 153 | 82 | 169 | 2.97e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371960 | AT5G65310.1 | 53.571 | 168 | 65 | 4 | 1 | 155 | 1 | 168 | 4.93e-49 | 164 |
| Msa0371960 | AT5G65310.2 | 59.441 | 143 | 47 | 2 | 24 | 155 | 8 | 150 | 1.14e-48 | 162 |
| Msa0371960 | AT4G40060.1 | 35.390 | 308 | 122 | 9 | 1 | 255 | 1 | 284 | 2.55e-45 | 154 |
| Msa0371960 | AT2G22430.1 | 49.057 | 159 | 75 | 2 | 1 | 155 | 2 | 158 | 1.99e-42 | 147 |
| Msa0371960 | AT1G69780.1 | 60.163 | 123 | 48 | 1 | 46 | 168 | 72 | 193 | 3.99e-40 | 140 |
| Msa0371960 | AT5G15150.1 | 58.594 | 128 | 49 | 3 | 42 | 166 | 95 | 221 | 2.02e-38 | 136 |
| Msa0371960 | AT1G26960.1 | 44.000 | 200 | 97 | 5 | 41 | 235 | 53 | 242 | 1.61e-37 | 132 |
| Msa0371960 | AT3G01220.1 | 44.086 | 186 | 94 | 4 | 44 | 224 | 70 | 250 | 3.57e-36 | 130 |
| Msa0371960 | AT3G01470.1 | 60.000 | 100 | 40 | 0 | 56 | 155 | 65 | 164 | 4.16e-33 | 121 |
| Msa0371960 | AT3G61890.1 | 39.161 | 143 | 82 | 2 | 62 | 202 | 33 | 172 | 1.67e-27 | 106 |
| Msa0371960 | AT1G27045.1 | 54.545 | 99 | 45 | 0 | 57 | 155 | 66 | 164 | 5.88e-27 | 104 |
| Msa0371960 | AT1G27045.2 | 54.545 | 99 | 45 | 0 | 57 | 155 | 15 | 113 | 9.03e-27 | 102 |
| Msa0371960 | AT1G27045.5 | 54.545 | 99 | 45 | 0 | 57 | 155 | 23 | 121 | 9.45e-27 | 102 |
| Msa0371960 | AT1G27045.3 | 54.545 | 99 | 45 | 0 | 57 | 155 | 23 | 121 | 9.45e-27 | 102 |
| Msa0371960 | AT2G46680.1 | 50.538 | 93 | 46 | 0 | 60 | 152 | 33 | 125 | 3.11e-26 | 103 |
| Msa0371960 | AT1G27045.4 | 53.684 | 95 | 44 | 0 | 57 | 151 | 66 | 160 | 2.29e-25 | 100 |
| Msa0371960 | AT2G46680.2 | 48.958 | 96 | 48 | 1 | 60 | 154 | 33 | 128 | 6.69e-25 | 99.8 |
| Msa0371960 | AT2G18550.1 | 39.521 | 167 | 78 | 4 | 59 | 217 | 61 | 212 | 1.46e-22 | 92.8 |
| Msa0371960 | AT5G03790.1 | 50.000 | 92 | 46 | 0 | 59 | 150 | 77 | 168 | 1.16e-21 | 90.5 |
| Msa0371960 | AT4G36740.2 | 47.788 | 113 | 55 | 1 | 52 | 160 | 49 | 161 | 3.48e-21 | 89.0 |
| Msa0371960 | AT4G36740.1 | 47.788 | 113 | 55 | 1 | 52 | 160 | 48 | 160 | 3.59e-21 | 89.0 |
| Msa0371960 | AT5G03790.2 | 52.439 | 82 | 39 | 0 | 59 | 140 | 77 | 158 | 6.95e-21 | 87.4 |
| Msa0371960 | AT2G36610.1 | 45.545 | 101 | 47 | 1 | 58 | 150 | 70 | 170 | 1.04e-20 | 87.0 |
| Msa0371960 | AT5G66700.1 | 35.429 | 175 | 101 | 5 | 46 | 217 | 60 | 225 | 3.92e-20 | 86.3 |
| Msa0371960 | AT5G53980.1 | 42.268 | 97 | 56 | 0 | 59 | 155 | 11 | 107 | 4.36e-19 | 81.6 |
| Msa0371960 | AT2G01430.1 | 37.589 | 141 | 80 | 2 | 45 | 184 | 125 | 258 | 5.28e-19 | 84.3 |
| Msa0371960 | AT5G47370.1 | 42.424 | 132 | 63 | 2 | 21 | 152 | 101 | 219 | 4.49e-18 | 82.0 |
| Msa0371960 | AT4G17460.1 | 42.063 | 126 | 62 | 3 | 32 | 153 | 104 | 222 | 1.36e-17 | 80.5 |
| Msa0371960 | AT5G06710.1 | 39.850 | 133 | 75 | 2 | 20 | 152 | 152 | 279 | 1.71e-17 | 80.9 |
| Msa0371960 | AT4G37790.1 | 42.241 | 116 | 59 | 2 | 38 | 153 | 106 | 213 | 8.51e-17 | 78.2 |
| Msa0371960 | AT2G44910.1 | 46.316 | 95 | 44 | 1 | 59 | 153 | 163 | 250 | 6.54e-16 | 76.3 |
| Msa0371960 | AT3G60390.1 | 42.593 | 108 | 58 | 1 | 45 | 152 | 148 | 251 | 3.30e-15 | 74.3 |
| Msa0371960 | AT2G22800.1 | 39.837 | 123 | 72 | 2 | 48 | 169 | 101 | 222 | 5.13e-15 | 73.2 |
| Msa0371960 | AT4G16780.1 | 43.689 | 103 | 50 | 2 | 51 | 153 | 122 | 216 | 8.16e-15 | 72.8 |
| Msa0371960 | AT2G01430.2 | 43.529 | 85 | 44 | 1 | 45 | 125 | 125 | 209 | 1.24e-12 | 65.5 |
| Msa0371960 | AT1G70920.2 | 38.525 | 122 | 73 | 1 | 23 | 144 | 5 | 124 | 4.58e-12 | 63.2 |
| Msa0371960 | AT1G70920.1 | 38.525 | 122 | 73 | 1 | 23 | 144 | 35 | 154 | 4.86e-12 | 63.9 |
| Msa0371960 | AT5G06710.4 | 39.560 | 91 | 54 | 1 | 20 | 110 | 152 | 241 | 6.18e-12 | 64.3 |
Find 58 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAAGTTCAATGATGAATT+TGG | 0.158147 | 3_1:+70260058 | Msa0371960:CDS |
| TCGTTCGTGCTCGACGATTT+TGG | 0.160811 | 3_1:-70259660 | None:intergenic |
| CTTTCTATACCTCTTGAAAT+TGG | 0.202435 | 3_1:-70259954 | None:intergenic |
| TTGTAGAACACTACTAATTT+AGG | 0.232382 | 3_1:-70259182 | None:intergenic |
| AACCTTAAGAACATCAAAAT+TGG | 0.244715 | 3_1:-70259722 | None:intergenic |
| TTGAAGTTAGCTGAAGAATT+AGG | 0.251335 | 3_1:+70259607 | Msa0371960:CDS |
| AACCTAGACAAGTTTCAATT+TGG | 0.262579 | 3_1:+70259635 | Msa0371960:CDS |
| TAATTCAAGTGGTGTGATTA+AGG | 0.320954 | 3_1:+70259992 | Msa0371960:CDS |
| ATAATCTCTTTCCAATTGTT+TGG | 0.328373 | 3_1:-70259686 | None:intergenic |
| TGTTACATAGGAATTATTAT+AGG | 0.331737 | 3_1:+70259011 | Msa0371960:five_prime_UTR |
| ATATAGTGGAGGATCTATTT+TGG | 0.334651 | 3_1:+70259207 | Msa0371960:five_prime_UTR |
| TTTAGAAAAGAGCTTTGAAT+TGG | 0.355867 | 3_1:+70259558 | Msa0371960:CDS |
| GTGTATGCAACTTGACTTGC+TGG | 0.366411 | 3_1:+70258968 | Msa0371960:five_prime_UTR |
| GATTCTCCTATATGTTTCAA+TGG | 0.381447 | 3_1:+70260029 | Msa0371960:CDS |
| GTTCAATAACTCAGAAACTA+TGG | 0.387793 | 3_1:+70259245 | Msa0371960:CDS |
| CATCTATATTATCCCAACTT+TGG | 0.396581 | 3_1:+70259151 | Msa0371960:five_prime_UTR |
| TCAGAATCAATTTATGAGAA+TGG | 0.408136 | 3_1:+70260121 | Msa0371960:CDS |
| CATACCTTTGGATTGGTACA+TGG | 0.415046 | 3_1:-70259280 | None:intergenic |
| ATATCTAATTGAAACTTGCT+TGG | 0.443229 | 3_1:+70260234 | Msa0371960:three_prime_UTR |
| AGTAATTGTGTGTGTGGTTG+AGG | 0.446780 | 3_1:+70259075 | Msa0371960:five_prime_UTR |
| ACCAAATTCATCATTGAACT+TGG | 0.453246 | 3_1:-70260059 | None:intergenic |
| ACTTATACATACCTTTGGAT+TGG | 0.465929 | 3_1:-70259287 | None:intergenic |
| CTCAGTTGGTATTACAAAGT+AGG | 0.474989 | 3_1:-70260203 | None:intergenic |
| AAAGAACCATTGAAACATAT+AGG | 0.475600 | 3_1:-70260035 | None:intergenic |
| TTTGCTTGATCTTATGCTGT+TGG | 0.476451 | 3_1:-70259109 | None:intergenic |
| GCTTGATCTTATGCTGTTGG+TGG | 0.477450 | 3_1:-70259106 | None:intergenic |
| ACAGGATAGGACAGGACATA+TGG | 0.477875 | 3_1:-70258937 | None:intergenic |
| CTTTGAATTGGACAACAAGC+TGG | 0.480175 | 3_1:+70259570 | Msa0371960:CDS |
| TCAGTTGGTATTACAAAGTA+GGG | 0.482035 | 3_1:-70260202 | None:intergenic |
| AGATATCATTTATGCTCAGT+TGG | 0.483613 | 3_1:-70260217 | None:intergenic |
| ACGAACGAAAACCAAACAAT+TGG | 0.484787 | 3_1:+70259675 | Msa0371960:CDS |
| TTTCTTATGATTTGTTACAT+AGG | 0.487809 | 3_1:+70258999 | Msa0371960:five_prime_UTR |
| TTAGGAAACAGAACCAAAGT+TGG | 0.488033 | 3_1:-70259164 | None:intergenic |
| TAGGAAACAGAACCAAAGTT+GGG | 0.490342 | 3_1:-70259163 | None:intergenic |
| GAATGAGACTCTTACTAGAA+AGG | 0.510168 | 3_1:+70259768 | Msa0371960:CDS |
| ATGTAACAAATCATAAGAAA+AGG | 0.513902 | 3_1:-70258996 | None:intergenic |
| TGCAAATGCAGGTGTGGATG+TGG | 0.525574 | 3_1:+70259399 | Msa0371960:intron |
| CAAGAAGATAGCTATGAAGA+TGG | 0.532967 | 3_1:+70259484 | Msa0371960:CDS |
| TGAAGATGGTAGTTCAATGT+TGG | 0.535009 | 3_1:+70259498 | Msa0371960:CDS |
| AACCAAATTGAAACTTGTCT+AGG | 0.545141 | 3_1:-70259637 | None:intergenic |
| TTATAGGAGAATTCACCCTA+TGG | 0.546341 | 3_1:+70259027 | Msa0371960:five_prime_UTR |
| ATTTCAAGAGGTATAGAAAG+AGG | 0.548836 | 3_1:+70259957 | Msa0371960:CDS |
| GATCAGAGGAATGAGACAAA+AGG | 0.552396 | 3_1:+70259421 | Msa0371960:CDS |
| CTTTCCATGTACCAATCCAA+AGG | 0.553684 | 3_1:+70259276 | Msa0371960:CDS |
| TTGGAGAAGAAAAGAAGACT+TGG | 0.569876 | 3_1:+70259517 | Msa0371960:CDS |
| GTTCATTATTATGATTCAAG+AGG | 0.577370 | 3_1:+70260080 | Msa0371960:CDS |
| AGTGTTCTACAAGCATATAG+TGG | 0.600674 | 3_1:+70259193 | Msa0371960:five_prime_UTR |
| GTAGAATGTCCAATTTCAAG+AGG | 0.608484 | 3_1:+70259945 | Msa0371960:CDS |
| AGTTACACACAGGATAGGAC+AGG | 0.616596 | 3_1:-70258945 | None:intergenic |
| AATAGTAGTAATTGTGTGTG+TGG | 0.626966 | 3_1:+70259069 | Msa0371960:five_prime_UTR |
| GAATCAATTTATGAGAATGG+AGG | 0.629666 | 3_1:+70260124 | Msa0371960:CDS |
| TCAAGAGGTATAGAAAGAGG+AGG | 0.641487 | 3_1:+70259960 | Msa0371960:CDS |
| TACACAGTTACACACAGGAT+AGG | 0.651786 | 3_1:-70258950 | None:intergenic |
| CAGTTGGTATTACAAAGTAG+GGG | 0.656897 | 3_1:-70260201 | None:intergenic |
| GGTTCAGAAAGTAATTCAAG+TGG | 0.665455 | 3_1:+70259981 | Msa0371960:CDS |
| GTTCTACAAGCATATAGTGG+AGG | 0.667408 | 3_1:+70259196 | Msa0371960:five_prime_UTR |
| CAGGTGTGGATGTGGATCAG+AGG | 0.671722 | 3_1:+70259407 | Msa0371960:intron |
| TTGCATACACAGTTACACAC+AGG | 0.704855 | 3_1:-70258955 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATACACACATAAATTA+TGG | - | chr3_1:70259355-70259374 | None:intergenic | 15.0% |
| !! | AAAAATACACACATAAATTA+TGG | - | chr3_1:70259355-70259374 | None:intergenic | 15.0% |
| !! | ATGTAACAAATCATAAGAAA+AGG | - | chr3_1:70258999-70259018 | None:intergenic | 20.0% |
| !!! | TTTCTTATGATTTGTTACAT+AGG | + | chr3_1:70258999-70259018 | Msa0371960:five_prime_UTR | 20.0% |
| !! | TGTTACATAGGAATTATTAT+AGG | + | chr3_1:70259011-70259030 | Msa0371960:five_prime_UTR | 20.0% |
| !!! | TATTCTAATGTTTTTCCATA+GGG | - | chr3_1:70259045-70259064 | None:intergenic | 20.0% |
| !!! | ATATTCTAATGTTTTTCCAT+AGG | - | chr3_1:70259046-70259065 | None:intergenic | 20.0% |
| !! | TAATTACTTATACATACCTT+TGG | - | chr3_1:70259295-70259314 | None:intergenic | 20.0% |
| !! | CACATAAATTATGGTAAAAA+GGG | - | chr3_1:70259346-70259365 | None:intergenic | 20.0% |
| !! | ACACATAAATTATGGTAAAA+AGG | - | chr3_1:70259347-70259366 | None:intergenic | 20.0% |
| !!! | AATTTATGTGTGTATTTTTG+TGG | + | chr3_1:70259356-70259375 | Msa0371960:intron | 20.0% |
| !! | ATGTAACAAATCATAAGAAA+AGG | - | chr3_1:70258999-70259018 | None:intergenic | 20.0% |
| !!! | TTTCTTATGATTTGTTACAT+AGG | + | chr3_1:70258999-70259018 | Msa0371960:five_prime_UTR | 20.0% |
| !! | TGTTACATAGGAATTATTAT+AGG | + | chr3_1:70259011-70259030 | Msa0371960:five_prime_UTR | 20.0% |
| !!! | TATTCTAATGTTTTTCCATA+GGG | - | chr3_1:70259045-70259064 | None:intergenic | 20.0% |
| !!! | ATATTCTAATGTTTTTCCAT+AGG | - | chr3_1:70259046-70259065 | None:intergenic | 20.0% |
| !! | TAATTACTTATACATACCTT+TGG | - | chr3_1:70259295-70259314 | None:intergenic | 20.0% |
| !! | CACATAAATTATGGTAAAAA+GGG | - | chr3_1:70259346-70259365 | None:intergenic | 20.0% |
| !! | ACACATAAATTATGGTAAAA+AGG | - | chr3_1:70259347-70259366 | None:intergenic | 20.0% |
| !!! | AATTTATGTGTGTATTTTTG+TGG | + | chr3_1:70259356-70259375 | Msa0371960:intron | 20.0% |
| ! | TTGTAGAACACTACTAATTT+AGG | - | chr3_1:70259185-70259204 | None:intergenic | 25.0% |
| !!! | TTTAGAAAAGAGCTTTGAAT+TGG | + | chr3_1:70259558-70259577 | Msa0371960:CDS | 25.0% |
| ! | ATAATCTCTTTCCAATTGTT+TGG | - | chr3_1:70259689-70259708 | None:intergenic | 25.0% |
| ! | AACCTTAAGAACATCAAAAT+TGG | - | chr3_1:70259725-70259744 | None:intergenic | 25.0% |
| ! | AAAGAACCATTGAAACATAT+AGG | - | chr3_1:70260038-70260057 | None:intergenic | 25.0% |
| ! | GTTCATTATTATGATTCAAG+AGG | + | chr3_1:70260080-70260099 | Msa0371960:CDS | 25.0% |
| ! | TCAGAATCAATTTATGAGAA+TGG | + | chr3_1:70260121-70260140 | Msa0371960:CDS | 25.0% |
| !! | ATATCTAATTGAAACTTGCT+TGG | + | chr3_1:70260234-70260253 | Msa0371960:three_prime_UTR | 25.0% |
| ! | TTGTAGAACACTACTAATTT+AGG | - | chr3_1:70259185-70259204 | None:intergenic | 25.0% |
| !!! | TTTAGAAAAGAGCTTTGAAT+TGG | + | chr3_1:70259558-70259577 | Msa0371960:CDS | 25.0% |
| ! | ATAATCTCTTTCCAATTGTT+TGG | - | chr3_1:70259689-70259708 | None:intergenic | 25.0% |
| ! | AACCTTAAGAACATCAAAAT+TGG | - | chr3_1:70259725-70259744 | None:intergenic | 25.0% |
| ! | AAAGAACCATTGAAACATAT+AGG | - | chr3_1:70260038-70260057 | None:intergenic | 25.0% |
| ! | GTTCATTATTATGATTCAAG+AGG | + | chr3_1:70260080-70260099 | Msa0371960:CDS | 25.0% |
| ! | TCAGAATCAATTTATGAGAA+TGG | + | chr3_1:70260121-70260140 | Msa0371960:CDS | 25.0% |
| !! | ATATCTAATTGAAACTTGCT+TGG | + | chr3_1:70260234-70260253 | Msa0371960:three_prime_UTR | 25.0% |
| AATAGTAGTAATTGTGTGTG+TGG | + | chr3_1:70259069-70259088 | Msa0371960:five_prime_UTR | 30.0% | |
| CATCTATATTATCCCAACTT+TGG | + | chr3_1:70259151-70259170 | Msa0371960:five_prime_UTR | 30.0% | |
| !! | ATATAGTGGAGGATCTATTT+TGG | + | chr3_1:70259207-70259226 | Msa0371960:five_prime_UTR | 30.0% |
| !! | ATTTTGGTCACATAATGAAG+AGG | + | chr3_1:70259223-70259242 | Msa0371960:exon | 30.0% |
| GTTCAATAACTCAGAAACTA+TGG | + | chr3_1:70259245-70259264 | Msa0371960:CDS | 30.0% | |
| ACTTATACATACCTTTGGAT+TGG | - | chr3_1:70259290-70259309 | None:intergenic | 30.0% | |
| TTGAAGTTAGCTGAAGAATT+AGG | + | chr3_1:70259607-70259626 | Msa0371960:CDS | 30.0% | |
| AACCTAGACAAGTTTCAATT+TGG | + | chr3_1:70259635-70259654 | Msa0371960:CDS | 30.0% | |
| AACCAAATTGAAACTTGTCT+AGG | - | chr3_1:70259640-70259659 | None:intergenic | 30.0% | |
| !! | GTCCAATTTTGATGTTCTTA+AGG | + | chr3_1:70259720-70259739 | Msa0371960:CDS | 30.0% |
| CTTTCTATACCTCTTGAAAT+TGG | - | chr3_1:70259957-70259976 | None:intergenic | 30.0% | |
| ! | ATTTCAAGAGGTATAGAAAG+AGG | + | chr3_1:70259957-70259976 | Msa0371960:CDS | 30.0% |
| TAATTCAAGTGGTGTGATTA+AGG | + | chr3_1:70259992-70260011 | Msa0371960:CDS | 30.0% | |
| GATTCTCCTATATGTTTCAA+TGG | + | chr3_1:70260029-70260048 | Msa0371960:CDS | 30.0% | |
| ACCAAATTCATCATTGAACT+TGG | - | chr3_1:70260062-70260081 | None:intergenic | 30.0% | |
| GAATCAATTTATGAGAATGG+AGG | + | chr3_1:70260124-70260143 | Msa0371960:CDS | 30.0% | |
| ! | TCAGTTGGTATTACAAAGTA+GGG | - | chr3_1:70260205-70260224 | None:intergenic | 30.0% |
| AGATATCATTTATGCTCAGT+TGG | - | chr3_1:70260220-70260239 | None:intergenic | 30.0% | |
| ACTTGCTTGGTTACAAAAAT+AGG | + | chr3_1:70260247-70260266 | Msa0371960:three_prime_UTR | 30.0% | |
| AATAGTAGTAATTGTGTGTG+TGG | + | chr3_1:70259069-70259088 | Msa0371960:five_prime_UTR | 30.0% | |
| CATCTATATTATCCCAACTT+TGG | + | chr3_1:70259151-70259170 | Msa0371960:five_prime_UTR | 30.0% | |
| !! | ATATAGTGGAGGATCTATTT+TGG | + | chr3_1:70259207-70259226 | Msa0371960:five_prime_UTR | 30.0% |
| !! | ATTTTGGTCACATAATGAAG+AGG | + | chr3_1:70259223-70259242 | Msa0371960:exon | 30.0% |
| GTTCAATAACTCAGAAACTA+TGG | + | chr3_1:70259245-70259264 | Msa0371960:CDS | 30.0% | |
| ACTTATACATACCTTTGGAT+TGG | - | chr3_1:70259290-70259309 | None:intergenic | 30.0% | |
| TTGAAGTTAGCTGAAGAATT+AGG | + | chr3_1:70259607-70259626 | Msa0371960:CDS | 30.0% | |
| AACCTAGACAAGTTTCAATT+TGG | + | chr3_1:70259635-70259654 | Msa0371960:CDS | 30.0% | |
| AACCAAATTGAAACTTGTCT+AGG | - | chr3_1:70259640-70259659 | None:intergenic | 30.0% | |
| !! | GTCCAATTTTGATGTTCTTA+AGG | + | chr3_1:70259720-70259739 | Msa0371960:CDS | 30.0% |
| CTTTCTATACCTCTTGAAAT+TGG | - | chr3_1:70259957-70259976 | None:intergenic | 30.0% | |
| ! | ATTTCAAGAGGTATAGAAAG+AGG | + | chr3_1:70259957-70259976 | Msa0371960:CDS | 30.0% |
| TAATTCAAGTGGTGTGATTA+AGG | + | chr3_1:70259992-70260011 | Msa0371960:CDS | 30.0% | |
| GATTCTCCTATATGTTTCAA+TGG | + | chr3_1:70260029-70260048 | Msa0371960:CDS | 30.0% | |
| ACCAAATTCATCATTGAACT+TGG | - | chr3_1:70260062-70260081 | None:intergenic | 30.0% | |
| GAATCAATTTATGAGAATGG+AGG | + | chr3_1:70260124-70260143 | Msa0371960:CDS | 30.0% | |
| ! | TCAGTTGGTATTACAAAGTA+GGG | - | chr3_1:70260205-70260224 | None:intergenic | 30.0% |
| AGATATCATTTATGCTCAGT+TGG | - | chr3_1:70260220-70260239 | None:intergenic | 30.0% | |
| ACTTGCTTGGTTACAAAAAT+AGG | + | chr3_1:70260247-70260266 | Msa0371960:three_prime_UTR | 30.0% | |
| TTATAGGAGAATTCACCCTA+TGG | + | chr3_1:70259027-70259046 | Msa0371960:five_prime_UTR | 35.0% | |
| TTTGCTTGATCTTATGCTGT+TGG | - | chr3_1:70259112-70259131 | None:intergenic | 35.0% | |
| TAGGAAACAGAACCAAAGTT+GGG | - | chr3_1:70259166-70259185 | None:intergenic | 35.0% | |
| TTAGGAAACAGAACCAAAGT+TGG | - | chr3_1:70259167-70259186 | None:intergenic | 35.0% | |
| AGTGTTCTACAAGCATATAG+TGG | + | chr3_1:70259193-70259212 | Msa0371960:five_prime_UTR | 35.0% | |
| GTTTCATTCTTTGCAAATGC+AGG | + | chr3_1:70259388-70259407 | Msa0371960:intron | 35.0% | |
| CAAGAAGATAGCTATGAAGA+TGG | + | chr3_1:70259484-70259503 | Msa0371960:CDS | 35.0% | |
| TGAAGATGGTAGTTCAATGT+TGG | + | chr3_1:70259498-70259517 | Msa0371960:CDS | 35.0% | |
| TTGGAGAAGAAAAGAAGACT+TGG | + | chr3_1:70259517-70259536 | Msa0371960:CDS | 35.0% | |
| ! | GCTAACTTCAATTTTCTCTC+TGG | - | chr3_1:70259598-70259617 | None:intergenic | 35.0% |
| ACGAACGAAAACCAAACAAT+TGG | + | chr3_1:70259675-70259694 | Msa0371960:CDS | 35.0% | |
| GAATGAGACTCTTACTAGAA+AGG | + | chr3_1:70259768-70259787 | Msa0371960:CDS | 35.0% | |
| GTAGAATGTCCAATTTCAAG+AGG | + | chr3_1:70259945-70259964 | Msa0371960:CDS | 35.0% | |
| GGTTCAGAAAGTAATTCAAG+TGG | + | chr3_1:70259981-70260000 | Msa0371960:CDS | 35.0% | |
| GCCAAGTTCAATGATGAATT+TGG | + | chr3_1:70260058-70260077 | Msa0371960:CDS | 35.0% | |
| ! | CAGTTGGTATTACAAAGTAG+GGG | - | chr3_1:70260204-70260223 | None:intergenic | 35.0% |
| ! | CTCAGTTGGTATTACAAAGT+AGG | - | chr3_1:70260206-70260225 | None:intergenic | 35.0% |
| TTATAGGAGAATTCACCCTA+TGG | + | chr3_1:70259027-70259046 | Msa0371960:five_prime_UTR | 35.0% | |
| TTTGCTTGATCTTATGCTGT+TGG | - | chr3_1:70259112-70259131 | None:intergenic | 35.0% | |
| TAGGAAACAGAACCAAAGTT+GGG | - | chr3_1:70259166-70259185 | None:intergenic | 35.0% | |
| TTAGGAAACAGAACCAAAGT+TGG | - | chr3_1:70259167-70259186 | None:intergenic | 35.0% | |
| AGTGTTCTACAAGCATATAG+TGG | + | chr3_1:70259193-70259212 | Msa0371960:five_prime_UTR | 35.0% | |
| GTTTCATTCTTTGCAAATGC+AGG | + | chr3_1:70259388-70259407 | Msa0371960:intron | 35.0% | |
| CAAGAAGATAGCTATGAAGA+TGG | + | chr3_1:70259484-70259503 | Msa0371960:CDS | 35.0% | |
| TGAAGATGGTAGTTCAATGT+TGG | + | chr3_1:70259498-70259517 | Msa0371960:CDS | 35.0% | |
| TTGGAGAAGAAAAGAAGACT+TGG | + | chr3_1:70259517-70259536 | Msa0371960:CDS | 35.0% | |
| ! | GCTAACTTCAATTTTCTCTC+TGG | - | chr3_1:70259598-70259617 | None:intergenic | 35.0% |
| ACGAACGAAAACCAAACAAT+TGG | + | chr3_1:70259675-70259694 | Msa0371960:CDS | 35.0% | |
| GAATGAGACTCTTACTAGAA+AGG | + | chr3_1:70259768-70259787 | Msa0371960:CDS | 35.0% | |
| GTAGAATGTCCAATTTCAAG+AGG | + | chr3_1:70259945-70259964 | Msa0371960:CDS | 35.0% | |
| GGTTCAGAAAGTAATTCAAG+TGG | + | chr3_1:70259981-70260000 | Msa0371960:CDS | 35.0% | |
| GCCAAGTTCAATGATGAATT+TGG | + | chr3_1:70260058-70260077 | Msa0371960:CDS | 35.0% | |
| ! | CAGTTGGTATTACAAAGTAG+GGG | - | chr3_1:70260204-70260223 | None:intergenic | 35.0% |
| ! | CTCAGTTGGTATTACAAAGT+AGG | - | chr3_1:70260206-70260225 | None:intergenic | 35.0% |
| TACACAGTTACACACAGGAT+AGG | - | chr3_1:70258953-70258972 | None:intergenic | 40.0% | |
| TTGCATACACAGTTACACAC+AGG | - | chr3_1:70258958-70258977 | None:intergenic | 40.0% | |
| AGTAATTGTGTGTGTGGTTG+AGG | + | chr3_1:70259075-70259094 | Msa0371960:five_prime_UTR | 40.0% | |
| GTTCTACAAGCATATAGTGG+AGG | + | chr3_1:70259196-70259215 | Msa0371960:five_prime_UTR | 40.0% | |
| CTTTCCATGTACCAATCCAA+AGG | + | chr3_1:70259276-70259295 | Msa0371960:CDS | 40.0% | |
| !! | CATACCTTTGGATTGGTACA+TGG | - | chr3_1:70259283-70259302 | None:intergenic | 40.0% |
| ATTCTTTGCAAATGCAGGTG+TGG | + | chr3_1:70259393-70259412 | Msa0371960:intron | 40.0% | |
| GATCAGAGGAATGAGACAAA+AGG | + | chr3_1:70259421-70259440 | Msa0371960:CDS | 40.0% | |
| CTTTGAATTGGACAACAAGC+TGG | + | chr3_1:70259570-70259589 | Msa0371960:CDS | 40.0% | |
| ! | TCAAGAGGTATAGAAAGAGG+AGG | + | chr3_1:70259960-70259979 | Msa0371960:CDS | 40.0% |
| TACACAGTTACACACAGGAT+AGG | - | chr3_1:70258953-70258972 | None:intergenic | 40.0% | |
| TTGCATACACAGTTACACAC+AGG | - | chr3_1:70258958-70258977 | None:intergenic | 40.0% | |
| AGTAATTGTGTGTGTGGTTG+AGG | + | chr3_1:70259075-70259094 | Msa0371960:five_prime_UTR | 40.0% | |
| GTTCTACAAGCATATAGTGG+AGG | + | chr3_1:70259196-70259215 | Msa0371960:five_prime_UTR | 40.0% | |
| CTTTCCATGTACCAATCCAA+AGG | + | chr3_1:70259276-70259295 | Msa0371960:CDS | 40.0% | |
| !! | CATACCTTTGGATTGGTACA+TGG | - | chr3_1:70259283-70259302 | None:intergenic | 40.0% |
| ATTCTTTGCAAATGCAGGTG+TGG | + | chr3_1:70259393-70259412 | Msa0371960:intron | 40.0% | |
| GATCAGAGGAATGAGACAAA+AGG | + | chr3_1:70259421-70259440 | Msa0371960:CDS | 40.0% | |
| CTTTGAATTGGACAACAAGC+TGG | + | chr3_1:70259570-70259589 | Msa0371960:CDS | 40.0% | |
| ! | TCAAGAGGTATAGAAAGAGG+AGG | + | chr3_1:70259960-70259979 | Msa0371960:CDS | 40.0% |
| ACAGGATAGGACAGGACATA+TGG | - | chr3_1:70258940-70258959 | None:intergenic | 45.0% | |
| AGTTACACACAGGATAGGAC+AGG | - | chr3_1:70258948-70258967 | None:intergenic | 45.0% | |
| !! | GTGTATGCAACTTGACTTGC+TGG | + | chr3_1:70258968-70258987 | Msa0371960:five_prime_UTR | 45.0% |
| GCTTGATCTTATGCTGTTGG+TGG | - | chr3_1:70259109-70259128 | None:intergenic | 45.0% | |
| ACAGGATAGGACAGGACATA+TGG | - | chr3_1:70258940-70258959 | None:intergenic | 45.0% | |
| AGTTACACACAGGATAGGAC+AGG | - | chr3_1:70258948-70258967 | None:intergenic | 45.0% | |
| !! | GTGTATGCAACTTGACTTGC+TGG | + | chr3_1:70258968-70258987 | Msa0371960:five_prime_UTR | 45.0% |
| GCTTGATCTTATGCTGTTGG+TGG | - | chr3_1:70259109-70259128 | None:intergenic | 45.0% | |
| TGCAAATGCAGGTGTGGATG+TGG | + | chr3_1:70259399-70259418 | Msa0371960:intron | 50.0% | |
| ! | TCGTTCGTGCTCGACGATTT+TGG | - | chr3_1:70259663-70259682 | None:intergenic | 50.0% |
| TGCAAATGCAGGTGTGGATG+TGG | + | chr3_1:70259399-70259418 | Msa0371960:intron | 50.0% | |
| ! | TCGTTCGTGCTCGACGATTT+TGG | - | chr3_1:70259663-70259682 | None:intergenic | 50.0% |
| CAGGTGTGGATGTGGATCAG+AGG | + | chr3_1:70259407-70259426 | Msa0371960:intron | 55.0% | |
| CAGGTGTGGATGTGGATCAG+AGG | + | chr3_1:70259407-70259426 | Msa0371960:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 70258833 | 70260318 | 70258833 | ID=Msa0371960;Name=Msa0371960 |
| chr3_1 | mRNA | 70258833 | 70260318 | 70258833 | ID=Msa0371960-mRNA-1;Parent=Msa0371960;Name=Msa0371960-mRNA-1;_AED=0.04;_eAED=0.04;_QI=404|1|1|1|1|1|3|104|255 |
| chr3_1 | exon | 70258833 | 70259297 | 70258833 | ID=Msa0371960-mRNA-1:exon:15196;Parent=Msa0371960-mRNA-1 |
| chr3_1 | exon | 70259410 | 70259789 | 70259410 | ID=Msa0371960-mRNA-1:exon:15197;Parent=Msa0371960-mRNA-1 |
| chr3_1 | exon | 70259888 | 70260318 | 70259888 | ID=Msa0371960-mRNA-1:exon:15198;Parent=Msa0371960-mRNA-1 |
| chr3_1 | five_prime_UTR | 70258833 | 70259236 | 70258833 | ID=Msa0371960-mRNA-1:five_prime_utr;Parent=Msa0371960-mRNA-1 |
| chr3_1 | CDS | 70259237 | 70259297 | 70259237 | ID=Msa0371960-mRNA-1:cds;Parent=Msa0371960-mRNA-1 |
| chr3_1 | CDS | 70259410 | 70259789 | 70259410 | ID=Msa0371960-mRNA-1:cds;Parent=Msa0371960-mRNA-1 |
| chr3_1 | CDS | 70259888 | 70260214 | 70259888 | ID=Msa0371960-mRNA-1:cds;Parent=Msa0371960-mRNA-1 |
| chr3_1 | three_prime_UTR | 70260215 | 70260318 | 70260215 | ID=Msa0371960-mRNA-1:three_prime_utr;Parent=Msa0371960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
