Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371970 | XP_003601380.1 | 99.252 | 401 | 3 | 0 | 1 | 401 | 1 | 401 | 0.0 | 829 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371970 | sp|Q0WU02|MTP10_ARATH | 59.548 | 398 | 154 | 2 | 2 | 396 | 33 | 426 | 1.39e-169 | 484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371970 | G7J6P9 | 99.252 | 401 | 3 | 0 | 1 | 401 | 1 | 401 | 0.0 | 829 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0371970 | Msa1075650 | 0.805069 | 1.594550e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371970 | MtrunA17_Chr3g0119281 | 99.252 | 401 | 3 | 0 | 1 | 401 | 1 | 401 | 0.0 | 829 |
| Msa0371970 | MtrunA17_Chr2g0310301 | 68.649 | 370 | 110 | 1 | 33 | 396 | 21 | 390 | 0.0 | 520 |
| Msa0371970 | MtrunA17_Chr8g0357061 | 63.636 | 385 | 130 | 3 | 23 | 398 | 10 | 393 | 1.94e-174 | 492 |
| Msa0371970 | MtrunA17_Chr7g0222641 | 56.915 | 376 | 144 | 5 | 33 | 397 | 29 | 397 | 1.30e-143 | 414 |
| Msa0371970 | MtrunA17_Chr3g0108381 | 52.273 | 352 | 158 | 6 | 49 | 398 | 53 | 396 | 4.07e-120 | 354 |
| Msa0371970 | MtrunA17_Chr5g0432881 | 50.000 | 358 | 161 | 6 | 49 | 399 | 44 | 390 | 5.16e-115 | 341 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371970 | AT1G16310.1 | 59.548 | 398 | 154 | 2 | 2 | 396 | 33 | 426 | 1.41e-170 | 484 |
| Msa0371970 | AT1G79520.1 | 62.973 | 370 | 131 | 2 | 33 | 396 | 30 | 399 | 3.34e-165 | 469 |
| Msa0371970 | AT1G79520.3 | 64.928 | 345 | 120 | 1 | 53 | 396 | 2 | 346 | 1.20e-163 | 463 |
| Msa0371970 | AT1G79520.4 | 64.928 | 345 | 120 | 1 | 53 | 396 | 2 | 346 | 1.20e-163 | 463 |
| Msa0371970 | AT1G79520.2 | 60.733 | 382 | 132 | 3 | 33 | 396 | 30 | 411 | 2.38e-161 | 460 |
| Msa0371970 | AT1G16310.2 | 68.627 | 306 | 96 | 0 | 91 | 396 | 8 | 313 | 2.39e-153 | 436 |
| Msa0371970 | AT2G39450.1 | 56.522 | 368 | 156 | 4 | 33 | 397 | 25 | 391 | 1.00e-124 | 366 |
| Msa0371970 | AT3G58060.2 | 51.642 | 335 | 156 | 4 | 69 | 398 | 71 | 404 | 2.12e-113 | 338 |
| Msa0371970 | AT3G58060.1 | 51.642 | 335 | 156 | 4 | 69 | 398 | 71 | 404 | 2.12e-113 | 338 |
Find 89 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGACTCCATTTGCCTTTC+CGG | 0.136661 | 3_1:-70269689 | None:intergenic |
| GAACTGATTCCAAAGATTAT+AGG | 0.227537 | 3_1:+70269576 | Msa0371970:CDS |
| ACAAAGGCTCTCTCAATTTC+AGG | 0.256839 | 3_1:-70272051 | None:intergenic |
| AGGCAGGAAATTCTTCTTAA+AGG | 0.260728 | 3_1:+70269872 | Msa0371970:CDS |
| AGGCAAATGGAGTCTCATTT+TGG | 0.269091 | 3_1:+70269695 | Msa0371970:CDS |
| TTCAATTCAAAGTAGATCTT+TGG | 0.278470 | 3_1:+70270137 | Msa0371970:CDS |
| AGTGGACTCATATATTGATT+TGG | 0.293198 | 3_1:+70269904 | Msa0371970:CDS |
| CAAAGATAACATATCTTTGT+TGG | 0.305133 | 3_1:+70271872 | Msa0371970:CDS |
| GTCTACCTCCACAAAATAAT+TGG | 0.309739 | 3_1:-70271950 | None:intergenic |
| ACTGGTGGCTTGACCCTGTT+GGG | 0.317003 | 3_1:+70271006 | Msa0371970:CDS |
| AAGCTCAGTCCTATAATCTT+TGG | 0.319164 | 3_1:-70269585 | None:intergenic |
| GGCAGGAAATTCTTCTTAAA+GGG | 0.327863 | 3_1:+70269873 | Msa0371970:CDS |
| TACATTCTCCATCACCGTTT+TGG | 0.328369 | 3_1:-70271809 | None:intergenic |
| TCTTTCACAGGATCCCTATC+AGG | 0.335776 | 3_1:-70270813 | None:intergenic |
| ATAACCTCAGTTAAATTTCC+AGG | 0.336600 | 3_1:-70269935 | None:intergenic |
| ACATTGAGAGCTTACACATT+TGG | 0.342108 | 3_1:+70271925 | Msa0371970:CDS |
| CAATATATGAGTCCACTTCT+TGG | 0.345585 | 3_1:-70269898 | None:intergenic |
| ATTTACAGGCTCAACCTGAT+AGG | 0.351719 | 3_1:+70270799 | Msa0371970:intron |
| CATTGAGAGCTTACACATTT+GGG | 0.355845 | 3_1:+70271926 | Msa0371970:CDS |
| GTGGACTCATATATTGATTT+GGG | 0.358521 | 3_1:+70269905 | Msa0371970:CDS |
| TCACTCTTGGATCTCTTGTC+TGG | 0.359889 | 3_1:+70270183 | Msa0371970:CDS |
| TCTTGTCTGGATTTATACTT+TGG | 0.364943 | 3_1:+70270196 | Msa0371970:CDS |
| ACATTCTCAGAAGCTATGTT+TGG | 0.366987 | 3_1:-70269614 | None:intergenic |
| TGACCCTGTTGGGGCCATCT+TGG | 0.367170 | 3_1:+70271016 | Msa0371970:CDS |
| AACTATGATCAATACCCTAT+TGG | 0.369651 | 3_1:+70270246 | Msa0371970:CDS |
| AAAGTGGATGATAGGAATTA+TGG | 0.371111 | 3_1:+70270836 | Msa0371970:CDS |
| AGCTTCTGAGAATGTGTCTA+TGG | 0.373980 | 3_1:+70269622 | Msa0371970:CDS |
| ATAGGGTATTGATCATAGTT+TGG | 0.374248 | 3_1:-70270243 | None:intergenic |
| GCTTCTGTCATGGCAACTCT+TGG | 0.376825 | 3_1:+70270481 | Msa0371970:CDS |
| CTGTATATACAATCAGCAAC+TGG | 0.394190 | 3_1:+70271785 | Msa0371970:CDS |
| GGCTGTGATTGCATCAACTT+TGG | 0.398137 | 3_1:+70270158 | Msa0371970:CDS |
| GTGAAAGAAAAGTGGATGAT+AGG | 0.400524 | 3_1:+70270828 | Msa0371970:CDS |
| CATTCTCAGAAGCTATGTTT+GGG | 0.413005 | 3_1:-70269613 | None:intergenic |
| GCATACGGTTCTTGCCAATA+GGG | 0.413510 | 3_1:-70270260 | None:intergenic |
| GATGTCATTACAAACTCAAT+TGG | 0.418971 | 3_1:+70270951 | Msa0371970:CDS |
| ATTGATTTGGGCACATTACC+TGG | 0.422317 | 3_1:+70269917 | Msa0371970:CDS |
| TACTGGTGGCTTGACCCTGT+TGG | 0.424283 | 3_1:+70271005 | Msa0371970:CDS |
| ATCAACTTTGGACTCACTCT+TGG | 0.426622 | 3_1:+70270170 | Msa0371970:CDS |
| CATACCAAGATGGCCCCAAC+AGG | 0.436837 | 3_1:-70271020 | None:intergenic |
| TGCATACGGTTCTTGCCAAT+AGG | 0.442809 | 3_1:-70270261 | None:intergenic |
| TTGTAATGACATCAAAGAAA+TGG | 0.448824 | 3_1:-70270941 | None:intergenic |
| GAGAATGTATGGTCATTGAT+TGG | 0.474887 | 3_1:+70271823 | Msa0371970:CDS |
| GCAATTTATTTATCTAACAT+AGG | 0.476378 | 3_1:+70270081 | Msa0371970:CDS |
| TCGCATACCGGAAAGGCAAA+TGG | 0.480246 | 3_1:+70269682 | Msa0371970:CDS |
| CAATTTATTTATCTAACATA+GGG | 0.488655 | 3_1:+70270082 | Msa0371970:CDS |
| TTTACAGGCTCAACCTGATA+GGG | 0.490948 | 3_1:+70270800 | Msa0371970:intron |
| AAACGGTGATGGAGAATGTA+TGG | 0.497020 | 3_1:+70271812 | Msa0371970:CDS |
| TGCTAGCCATCAAATTCTAC+TGG | 0.503821 | 3_1:+70270988 | Msa0371970:CDS |
| AACTTGCTAAATATTATAAG+AGG | 0.509920 | 3_1:+70269852 | Msa0371970:CDS |
| GGCTCATGACATATTGTCGC+AGG | 0.512471 | 3_1:+70270883 | Msa0371970:CDS |
| AATGAGAGAAATCATTGTAA+AGG | 0.516405 | 3_1:+70270525 | Msa0371970:CDS |
| AATCAGCAACTGGGCCAAAA+CGG | 0.517051 | 3_1:+70271795 | Msa0371970:CDS |
| AGTTGTATTTGCTTCTGTCA+TGG | 0.517329 | 3_1:+70270471 | Msa0371970:CDS |
| TGCTAAATATTATAAGAGGC+AGG | 0.518952 | 3_1:+70269856 | Msa0371970:CDS |
| AAGCCACCAGTAGAATTTGA+TGG | 0.521659 | 3_1:-70270994 | None:intergenic |
| ATGAGATGAAGCAACTTGAA+AGG | 0.525095 | 3_1:+70270046 | Msa0371970:CDS |
| TGTGCTTGATCTCCTTGTCA+TGG | 0.529743 | 3_1:-70271897 | None:intergenic |
| TCTTAAAGGGTACCAAGAAG+TGG | 0.531975 | 3_1:+70269886 | Msa0371970:CDS |
| CAAGCAGCTCAAGGTGGCAT+AGG | 0.538253 | 3_1:+70272110 | Msa0371970:CDS |
| TCAATCTTTCAGAAAGACAA+AGG | 0.541662 | 3_1:+70269828 | Msa0371970:intron |
| CAACTGGGCCAAAACGGTGA+TGG | 0.550531 | 3_1:+70271801 | Msa0371970:CDS |
| CATGGACGAACATCGCATAC+CGG | 0.553586 | 3_1:+70269670 | Msa0371970:CDS |
| ATCTTTGCAAGGTACTCCGA+TGG | 0.554961 | 3_1:-70271856 | None:intergenic |
| AAAGATATGTTATCTTTGCA+AGG | 0.559380 | 3_1:-70271867 | None:intergenic |
| CTTATTCAAGCACATGACAT+TGG | 0.564826 | 3_1:+70271997 | Msa0371970:CDS |
| AAAGAAATGGTCTTGAGCAT+AGG | 0.569273 | 3_1:-70270928 | None:intergenic |
| GGGATCCTGTGAAAGAAAAG+TGG | 0.569420 | 3_1:+70270820 | Msa0371970:CDS |
| CTGAGAATGTGTCTATGGCT+AGG | 0.571634 | 3_1:+70269627 | Msa0371970:CDS |
| TTTATCTAACATAGGGAACA+TGG | 0.588759 | 3_1:+70270089 | Msa0371970:CDS |
| TGTATATACAATCAGCAACT+GGG | 0.607879 | 3_1:+70271786 | Msa0371970:CDS |
| GCTTGAACACAAGCAGCTCA+AGG | 0.608544 | 3_1:+70272101 | Msa0371970:CDS |
| ACGAACATCGCATACCGGAA+AGG | 0.613984 | 3_1:+70269675 | Msa0371970:CDS |
| ATTCAAATCAACATGAACAA+AGG | 0.625105 | 3_1:-70272067 | None:intergenic |
| CTGGTGGCTTGACCCTGTTG+GGG | 0.628900 | 3_1:+70271007 | Msa0371970:CDS |
| ACTTGAAAGGAATGAGAAGG+TGG | 0.639950 | 3_1:+70270059 | Msa0371970:CDS |
| TAGCCATCAAATTCTACTGG+TGG | 0.641479 | 3_1:+70270991 | Msa0371970:CDS |
| GCAACTTGAAAGGAATGAGA+AGG | 0.645286 | 3_1:+70270056 | Msa0371970:CDS |
| TTTGATGGCTAGCACTGCCG+TGG | 0.651899 | 3_1:-70270979 | None:intergenic |
| AAACTCAATTGGTCTAGCCA+CGG | 0.656827 | 3_1:+70270962 | Msa0371970:CDS |
| TCTTTGTTGGAACCATGACA+AGG | 0.659684 | 3_1:+70271885 | Msa0371970:CDS |
| CTATGGCTAGGCAACCGTCG+TGG | 0.663798 | 3_1:+70269639 | Msa0371970:CDS |
| TGGCTAGGCAACCGTCGTGG+AGG | 0.664389 | 3_1:+70269642 | Msa0371970:CDS |
| ACCGTCGTGGAGGATCAACA+TGG | 0.674849 | 3_1:+70269652 | Msa0371970:CDS |
| ATTCTCAGAAGCTATGTTTG+GGG | 0.678559 | 3_1:-70269612 | None:intergenic |
| CAAGAACCGTATGCAACCTG+TGG | 0.684654 | 3_1:+70270269 | Msa0371970:CDS |
| ATTACCTGGAAATTTAACTG+AGG | 0.684960 | 3_1:+70269931 | Msa0371970:CDS |
| TCCATGTTGATCCTCCACGA+CGG | 0.697714 | 3_1:-70269653 | None:intergenic |
| ATACCAAGATGGCCCCAACA+GGG | 0.715884 | 3_1:-70271019 | None:intergenic |
| TGAACACAAGCAGCTCAAGG+TGG | 0.727782 | 3_1:+70272104 | Msa0371970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTCTTATGAACATT+TGG | + | chr3_1:70269983-70270002 | Msa0371970:intron | 15.0% |
| !! | CAATTTATTTATCTAACATA+GGG | + | chr3_1:70270082-70270101 | Msa0371970:CDS | 15.0% |
| !!! | AACTTTTTTTGTGATAAAAA+AGG | - | chr3_1:70270652-70270671 | None:intergenic | 15.0% |
| !! | CTTCAAATTTATTTATTTAC+AGG | + | chr3_1:70270785-70270804 | Msa0371970:intron | 15.0% |
| !!! | AACTTGCTAAATATTATAAG+AGG | + | chr3_1:70269852-70269871 | Msa0371970:CDS | 20.0% |
| !!! | GAACATTTGGTTTATTAAAA+TGG | + | chr3_1:70269996-70270015 | Msa0371970:intron | 20.0% |
| !! | AAAATTAAAAGGTTCCATTT+AGG | - | chr3_1:70270022-70270041 | None:intergenic | 20.0% |
| !! | GCAATTTATTTATCTAACAT+AGG | + | chr3_1:70270081-70270100 | Msa0371970:CDS | 20.0% |
| !!! | AATATTATGAAAATTGGCTT+AGG | - | chr3_1:70270321-70270340 | None:intergenic | 20.0% |
| !! | GATATCTTATAAATGCTATT+AGG | + | chr3_1:70270385-70270404 | Msa0371970:intron | 20.0% |
| !! | GTTTACAAAATATATTTGCA+GGG | + | chr3_1:70270445-70270464 | Msa0371970:intron | 20.0% |
| !! | TTTACAAAATATATTTGCAG+GGG | + | chr3_1:70270446-70270465 | Msa0371970:intron | 20.0% |
| !!! | ACTACAATAGTTTTTTAACT+AGG | + | chr3_1:70270602-70270621 | Msa0371970:intron | 20.0% |
| !! | AAATAAAAGCAACTAAACTA+AGG | - | chr3_1:70271099-70271118 | None:intergenic | 20.0% |
| !! | TTCTCTAACTTCTATTATTA+GGG | - | chr3_1:70271553-70271572 | None:intergenic | 20.0% |
| !! | TTTCTCTAACTTCTATTATT+AGG | - | chr3_1:70271554-70271573 | None:intergenic | 20.0% |
| !!! | ATTGACAATTTGCAATTTTA+GGG | + | chr3_1:70271582-70271601 | Msa0371970:intron | 20.0% |
| !! | TGTAAATATTTACAATTTCG+AGG | + | chr3_1:70271606-70271625 | Msa0371970:intron | 20.0% |
| ! | ATACGAAATGTGAACAAAAA+GGG | - | chr3_1:70269763-70269782 | None:intergenic | 25.0% |
| ! | GTTTATTAAAATGGCCTAAA+TGG | + | chr3_1:70270005-70270024 | Msa0371970:intron | 25.0% |
| !!! | AATGGAACCTTTTAATTTTC+AGG | + | chr3_1:70270023-70270042 | Msa0371970:intron | 25.0% |
| ! | ATCTCATCCTGAAAATTAAA+AGG | - | chr3_1:70270033-70270052 | None:intergenic | 25.0% |
| ! | TTCAATTCAAAGTAGATCTT+TGG | + | chr3_1:70270137-70270156 | Msa0371970:CDS | 25.0% |
| ! | CGTTTACAAAATATATTTGC+AGG | + | chr3_1:70270444-70270463 | Msa0371970:intron | 25.0% |
| ! | AATGAGAGAAATCATTGTAA+AGG | + | chr3_1:70270525-70270544 | Msa0371970:CDS | 25.0% |
| ! | TTCGACAATGGTATTTAAAT+AGG | - | chr3_1:70270709-70270728 | None:intergenic | 25.0% |
| ! | TTATAGAATCTATTCGACAA+TGG | - | chr3_1:70270721-70270740 | None:intergenic | 25.0% |
| ! | TTGTAATGACATCAAAGAAA+TGG | - | chr3_1:70270944-70270963 | None:intergenic | 25.0% |
| !!! | AAGGTTTGTCATTTCTTTTA+TGG | - | chr3_1:70271080-70271099 | None:intergenic | 25.0% |
| ! | GATGTTGTGAATAAATGAAT+TGG | + | chr3_1:70271203-70271222 | Msa0371970:intron | 25.0% |
| !! | TGAATAAATGAATTGGTTCT+CGG | + | chr3_1:70271210-70271229 | Msa0371970:intron | 25.0% |
| ! | GAAATTTAGGTCATCTTATA+GGG | + | chr3_1:70271362-70271381 | Msa0371970:intron | 25.0% |
| ! | TCTTATAGGGACTAATTTAT+CGG | + | chr3_1:70271375-70271394 | Msa0371970:intron | 25.0% |
| ! | ACTATGACATGCTAAAAATA+TGG | - | chr3_1:70271530-70271549 | None:intergenic | 25.0% |
| !! | GATTGACAATTTGCAATTTT+AGG | + | chr3_1:70271581-70271600 | Msa0371970:intron | 25.0% |
| ! | TAATAACATCAAGTCATGAA+TGG | + | chr3_1:70271753-70271772 | Msa0371970:intron | 25.0% |
| ! | AAAGATATGTTATCTTTGCA+AGG | - | chr3_1:70271870-70271889 | None:intergenic | 25.0% |
| ! | CAAAGATAACATATCTTTGT+TGG | + | chr3_1:70271872-70271891 | Msa0371970:CDS | 25.0% |
| ! | ATTCAAATCAACATGAACAA+AGG | - | chr3_1:70272070-70272089 | None:intergenic | 25.0% |
| ! | GAACTGATTCCAAAGATTAT+AGG | + | chr3_1:70269576-70269595 | Msa0371970:CDS | 30.0% |
| CATACGAAATGTGAACAAAA+AGG | - | chr3_1:70269764-70269783 | None:intergenic | 30.0% | |
| TCAATCTTTCAGAAAGACAA+AGG | + | chr3_1:70269828-70269847 | Msa0371970:intron | 30.0% | |
| TGCTAAATATTATAAGAGGC+AGG | + | chr3_1:70269856-70269875 | Msa0371970:CDS | 30.0% | |
| ! | AGTGGACTCATATATTGATT+TGG | + | chr3_1:70269904-70269923 | Msa0371970:CDS | 30.0% |
| !! | GTGGACTCATATATTGATTT+GGG | + | chr3_1:70269905-70269924 | Msa0371970:CDS | 30.0% |
| ATTACCTGGAAATTTAACTG+AGG | + | chr3_1:70269931-70269950 | Msa0371970:CDS | 30.0% | |
| ATAACCTCAGTTAAATTTCC+AGG | - | chr3_1:70269938-70269957 | None:intergenic | 30.0% | |
| TTTATCTAACATAGGGAACA+TGG | + | chr3_1:70270089-70270108 | Msa0371970:CDS | 30.0% | |
| TCTTGTCTGGATTTATACTT+TGG | + | chr3_1:70270196-70270215 | Msa0371970:CDS | 30.0% | |
| !! | ATAGGGTATTGATCATAGTT+TGG | - | chr3_1:70270246-70270265 | None:intergenic | 30.0% |
| AACTATGATCAATACCCTAT+TGG | + | chr3_1:70270246-70270265 | Msa0371970:CDS | 30.0% | |
| TAAATGTTGAGTAGTGTCTT+TGG | - | chr3_1:70270761-70270780 | None:intergenic | 30.0% | |
| AAAGTGGATGATAGGAATTA+TGG | + | chr3_1:70270836-70270855 | Msa0371970:CDS | 30.0% | |
| GATGTCATTACAAACTCAAT+TGG | + | chr3_1:70270951-70270970 | Msa0371970:CDS | 30.0% | |
| AACTGAAAAACATACCAAGA+TGG | - | chr3_1:70271033-70271052 | None:intergenic | 30.0% | |
| TTCAGCAACATATTCTTAGT+AGG | + | chr3_1:70271174-70271193 | Msa0371970:intron | 30.0% | |
| ! | ACTAACTGACTTCGAAATTT+AGG | + | chr3_1:70271349-70271368 | Msa0371970:intron | 30.0% |
| CGAAATTTAGGTCATCTTAT+AGG | + | chr3_1:70271361-70271380 | Msa0371970:intron | 30.0% | |
| !! | ATGATTTTGTGTCATTGATG+TGG | + | chr3_1:70271491-70271510 | Msa0371970:intron | 30.0% |
| !! | TGATTTTGTGTCATTGATGT+GGG | + | chr3_1:70271492-70271511 | Msa0371970:intron | 30.0% |
| TCTGTGTACAATTCATAAAG+TGG | - | chr3_1:70271646-70271665 | None:intergenic | 30.0% | |
| GTATGTATTATGAACAAGCT+CGG | - | chr3_1:70271723-70271742 | None:intergenic | 30.0% | |
| TGTATATACAATCAGCAACT+GGG | + | chr3_1:70271786-70271805 | Msa0371970:CDS | 30.0% | |
| !! | ATTTGGGACCAATTATTTTG+TGG | + | chr3_1:70271942-70271961 | Msa0371970:CDS | 30.0% |
| AAGCTCAGTCCTATAATCTT+TGG | - | chr3_1:70269588-70269607 | None:intergenic | 35.0% | |
| ATTCTCAGAAGCTATGTTTG+GGG | - | chr3_1:70269615-70269634 | None:intergenic | 35.0% | |
| CATTCTCAGAAGCTATGTTT+GGG | - | chr3_1:70269616-70269635 | None:intergenic | 35.0% | |
| ACATTCTCAGAAGCTATGTT+TGG | - | chr3_1:70269617-70269636 | None:intergenic | 35.0% | |
| AGGCAGGAAATTCTTCTTAA+AGG | + | chr3_1:70269872-70269891 | Msa0371970:CDS | 35.0% | |
| GGCAGGAAATTCTTCTTAAA+GGG | + | chr3_1:70269873-70269892 | Msa0371970:CDS | 35.0% | |
| CAATATATGAGTCCACTTCT+TGG | - | chr3_1:70269901-70269920 | None:intergenic | 35.0% | |
| ATGAGATGAAGCAACTTGAA+AGG | + | chr3_1:70270046-70270065 | Msa0371970:CDS | 35.0% | |
| AGTTGTATTTGCTTCTGTCA+TGG | + | chr3_1:70270471-70270490 | Msa0371970:CDS | 35.0% | |
| !! | ATCATCCACTTTTCTTTCAC+AGG | - | chr3_1:70270828-70270847 | None:intergenic | 35.0% |
| GTGAAAGAAAAGTGGATGAT+AGG | + | chr3_1:70270828-70270847 | Msa0371970:CDS | 35.0% | |
| ACAGCCACAGTTGTAAAAAT+TGG | + | chr3_1:70270861-70270880 | Msa0371970:CDS | 35.0% | |
| CAGCCACAGTTGTAAAAATT+GGG | + | chr3_1:70270862-70270881 | Msa0371970:CDS | 35.0% | |
| ! | AAAGAAATGGTCTTGAGCAT+AGG | - | chr3_1:70270931-70270950 | None:intergenic | 35.0% |
| TGCAGTATTAGTTGTGAACT+AGG | - | chr3_1:70271125-70271144 | None:intergenic | 35.0% | |
| AACCCTCTATTAGTCGTTAT+AGG | + | chr3_1:70271256-70271275 | Msa0371970:intron | 35.0% | |
| AGCCTATAACGACTAATAGA+GGG | - | chr3_1:70271261-70271280 | None:intergenic | 35.0% | |
| TAGCCTATAACGACTAATAG+AGG | - | chr3_1:70271262-70271281 | None:intergenic | 35.0% | |
| CTACTTTGCCTGTGAAATTT+AGG | - | chr3_1:70271450-70271469 | None:intergenic | 35.0% | |
| CTGTATATACAATCAGCAAC+TGG | + | chr3_1:70271785-70271804 | Msa0371970:CDS | 35.0% | |
| GAGAATGTATGGTCATTGAT+TGG | + | chr3_1:70271823-70271842 | Msa0371970:CDS | 35.0% | |
| ACATTGAGAGCTTACACATT+TGG | + | chr3_1:70271925-70271944 | Msa0371970:CDS | 35.0% | |
| CATTGAGAGCTTACACATTT+GGG | + | chr3_1:70271926-70271945 | Msa0371970:CDS | 35.0% | |
| GTCTACCTCCACAAAATAAT+TGG | - | chr3_1:70271953-70271972 | None:intergenic | 35.0% | |
| CTTATTCAAGCACATGACAT+TGG | + | chr3_1:70271997-70272016 | Msa0371970:CDS | 35.0% | |
| ! | AGCTTCTGAGAATGTGTCTA+TGG | + | chr3_1:70269622-70269641 | Msa0371970:CDS | 40.0% |
| ! | AGGCAAATGGAGTCTCATTT+TGG | + | chr3_1:70269695-70269714 | Msa0371970:CDS | 40.0% |
| !!! | ATGGAGTCTCATTTTGGCTT+TGG | + | chr3_1:70269701-70269720 | Msa0371970:CDS | 40.0% |
| !! | TCTTAAAGGGTACCAAGAAG+TGG | + | chr3_1:70269886-70269905 | Msa0371970:CDS | 40.0% |
| !! | ATTGATTTGGGCACATTACC+TGG | + | chr3_1:70269917-70269936 | Msa0371970:CDS | 40.0% |
| GCAACTTGAAAGGAATGAGA+AGG | + | chr3_1:70270056-70270075 | Msa0371970:CDS | 40.0% | |
| ACTTGAAAGGAATGAGAAGG+TGG | + | chr3_1:70270059-70270078 | Msa0371970:CDS | 40.0% | |
| ATCAACTTTGGACTCACTCT+TGG | + | chr3_1:70270170-70270189 | Msa0371970:CDS | 40.0% | |
| ! | CTTTTACCACAGGTTGCATA+CGG | - | chr3_1:70270278-70270297 | None:intergenic | 40.0% |
| !! | CTTAGGTGTGTTCTAAGAGA+AGG | - | chr3_1:70270304-70270323 | None:intergenic | 40.0% |
| ACTATTGTAGTGTTGCATCG+TGG | - | chr3_1:70270593-70270612 | None:intergenic | 40.0% | |
| !! | GGACAAAATACCACTTTTCG+TGG | + | chr3_1:70270623-70270642 | Msa0371970:intron | 40.0% |
| AAAAAGGCTACCACGAAAAG+TGG | - | chr3_1:70270636-70270655 | None:intergenic | 40.0% | |
| ATTTACAGGCTCAACCTGAT+AGG | + | chr3_1:70270799-70270818 | Msa0371970:intron | 40.0% | |
| TTTACAGGCTCAACCTGATA+GGG | + | chr3_1:70270800-70270819 | Msa0371970:intron | 40.0% | |
| ! | GAGCCCAATTTTTACAACTG+TGG | - | chr3_1:70270868-70270887 | None:intergenic | 40.0% |
| ! | AAACTCAATTGGTCTAGCCA+CGG | + | chr3_1:70270962-70270981 | Msa0371970:CDS | 40.0% |
| TGCTAGCCATCAAATTCTAC+TGG | + | chr3_1:70270988-70271007 | Msa0371970:CDS | 40.0% | |
| TAGCCATCAAATTCTACTGG+TGG | + | chr3_1:70270991-70271010 | Msa0371970:CDS | 40.0% | |
| AAGCCACCAGTAGAATTTGA+TGG | - | chr3_1:70270997-70271016 | None:intergenic | 40.0% | |
| TTTCGAAGTCAGTTAGTCGT+TGG | - | chr3_1:70271346-70271365 | None:intergenic | 40.0% | |
| TCGAGAGACCTAAATTTCAC+AGG | + | chr3_1:70271439-70271458 | Msa0371970:intron | 40.0% | |
| ! | TACATTCTCCATCACCGTTT+TGG | - | chr3_1:70271812-70271831 | None:intergenic | 40.0% |
| !! | AAACGGTGATGGAGAATGTA+TGG | + | chr3_1:70271812-70271831 | Msa0371970:CDS | 40.0% |
| GATTGGAAAAACAGCTCCAT+CGG | + | chr3_1:70271840-70271859 | Msa0371970:CDS | 40.0% | |
| TCTTTGTTGGAACCATGACA+AGG | + | chr3_1:70271885-70271904 | Msa0371970:CDS | 40.0% | |
| !! | TGGGACCAATTATTTTGTGG+AGG | + | chr3_1:70271945-70271964 | Msa0371970:CDS | 40.0% |
| ACAAAGGCTCTCTCAATTTC+AGG | - | chr3_1:70272054-70272073 | None:intergenic | 40.0% | |
| CTGAGAATGTGTCTATGGCT+AGG | + | chr3_1:70269627-70269646 | Msa0371970:CDS | 45.0% | |
| TGAGACTCCATTTGCCTTTC+CGG | - | chr3_1:70269692-70269711 | None:intergenic | 45.0% | |
| GGCTGTGATTGCATCAACTT+TGG | + | chr3_1:70270158-70270177 | Msa0371970:CDS | 45.0% | |
| TCACTCTTGGATCTCTTGTC+TGG | + | chr3_1:70270183-70270202 | Msa0371970:CDS | 45.0% | |
| GCATACGGTTCTTGCCAATA+GGG | - | chr3_1:70270263-70270282 | None:intergenic | 45.0% | |
| TGCATACGGTTCTTGCCAAT+AGG | - | chr3_1:70270264-70270283 | None:intergenic | 45.0% | |
| ! | GAGAAGGAAGCTTTTACCAC+AGG | - | chr3_1:70270288-70270307 | None:intergenic | 45.0% |
| TCTTTCACAGGATCCCTATC+AGG | - | chr3_1:70270816-70270835 | None:intergenic | 45.0% | |
| GGGATCCTGTGAAAGAAAAG+TGG | + | chr3_1:70270820-70270839 | Msa0371970:CDS | 45.0% | |
| CATTGATGTGGGATCAACGT+AGG | + | chr3_1:70271503-70271522 | Msa0371970:intron | 45.0% | |
| AATCAGCAACTGGGCCAAAA+CGG | + | chr3_1:70271795-70271814 | Msa0371970:CDS | 45.0% | |
| ! | ATCTTTGCAAGGTACTCCGA+TGG | - | chr3_1:70271859-70271878 | None:intergenic | 45.0% |
| TGTGCTTGATCTCCTTGTCA+TGG | - | chr3_1:70271900-70271919 | None:intergenic | 45.0% | |
| !! | AAAAATAATATTATGAAAAT+TGG | - | chr3_1:70270327-70270346 | None:intergenic | 5.0% |
| TCCATGTTGATCCTCCACGA+CGG | - | chr3_1:70269656-70269675 | None:intergenic | 50.0% | |
| CATGGACGAACATCGCATAC+CGG | + | chr3_1:70269670-70269689 | Msa0371970:CDS | 50.0% | |
| ACGAACATCGCATACCGGAA+AGG | + | chr3_1:70269675-70269694 | Msa0371970:CDS | 50.0% | |
| TCGCATACCGGAAAGGCAAA+TGG | + | chr3_1:70269682-70269701 | Msa0371970:CDS | 50.0% | |
| CAAGAACCGTATGCAACCTG+TGG | + | chr3_1:70270269-70270288 | Msa0371970:CDS | 50.0% | |
| GCTTCTGTCATGGCAACTCT+TGG | + | chr3_1:70270481-70270500 | Msa0371970:CDS | 50.0% | |
| GTAGTGTTGCATCGTGGAAG+TGG | - | chr3_1:70270587-70270606 | None:intergenic | 50.0% | |
| TATTCTCTCCCACGATGCAG+CGG | - | chr3_1:70270681-70270700 | None:intergenic | 50.0% | |
| GGCTCATGACATATTGTCGC+AGG | + | chr3_1:70270883-70270902 | Msa0371970:CDS | 50.0% | |
| ATACCAAGATGGCCCCAACA+GGG | - | chr3_1:70271022-70271041 | None:intergenic | 50.0% | |
| ! | TCAGTTAGTCGTTGGTGAGC+TGG | - | chr3_1:70271338-70271357 | None:intergenic | 50.0% |
| GCTTGAACACAAGCAGCTCA+AGG | + | chr3_1:70272101-70272120 | Msa0371970:CDS | 50.0% | |
| TGAACACAAGCAGCTCAAGG+TGG | + | chr3_1:70272104-70272123 | Msa0371970:CDS | 50.0% | |
| ACCGTCGTGGAGGATCAACA+TGG | + | chr3_1:70269652-70269671 | Msa0371970:CDS | 55.0% | |
| TTGTTGCACCGCTGCATCGT+GGG | + | chr3_1:70270670-70270689 | Msa0371970:intron | 55.0% | |
| ! | TTTGATGGCTAGCACTGCCG+TGG | - | chr3_1:70270982-70271001 | None:intergenic | 55.0% |
| TACTGGTGGCTTGACCCTGT+TGG | + | chr3_1:70271005-70271024 | Msa0371970:CDS | 55.0% | |
| ACTGGTGGCTTGACCCTGTT+GGG | + | chr3_1:70271006-70271025 | Msa0371970:CDS | 55.0% | |
| CATACCAAGATGGCCCCAAC+AGG | - | chr3_1:70271023-70271042 | None:intergenic | 55.0% | |
| CAACTGGGCCAAAACGGTGA+TGG | + | chr3_1:70271801-70271820 | Msa0371970:CDS | 55.0% | |
| CTATGGCTAGGCAACCGTCG+TGG | + | chr3_1:70269639-70269658 | Msa0371970:CDS | 60.0% | |
| GTTGTTGCACCGCTGCATCG+TGG | + | chr3_1:70270669-70270688 | Msa0371970:intron | 60.0% | |
| CTGGTGGCTTGACCCTGTTG+GGG | + | chr3_1:70271007-70271026 | Msa0371970:CDS | 60.0% | |
| TGACCCTGTTGGGGCCATCT+TGG | + | chr3_1:70271016-70271035 | Msa0371970:CDS | 60.0% | |
| TGGCTAGGCAACCGTCGTGG+AGG | + | chr3_1:70269642-70269661 | Msa0371970:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 70269560 | 70272131 | 70269560 | ID=Msa0371970;Name=Msa0371970 |
| chr3_1 | mRNA | 70269560 | 70272131 | 70269560 | ID=Msa0371970-mRNA-1;Parent=Msa0371970;Name=Msa0371970-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0|0|1|1|1|6|0|401 |
| chr3_1 | exon | 70269560 | 70269743 | 70269560 | ID=Msa0371970-mRNA-1:exon:15199;Parent=Msa0371970-mRNA-1 |
| chr3_1 | exon | 70269840 | 70269952 | 70269840 | ID=Msa0371970-mRNA-1:exon:15200;Parent=Msa0371970-mRNA-1 |
| chr3_1 | exon | 70270045 | 70270290 | 70270045 | ID=Msa0371970-mRNA-1:exon:15201;Parent=Msa0371970-mRNA-1 |
| chr3_1 | exon | 70270466 | 70270546 | 70270466 | ID=Msa0371970-mRNA-1:exon:15202;Parent=Msa0371970-mRNA-1 |
| chr3_1 | exon | 70270807 | 70271037 | 70270807 | ID=Msa0371970-mRNA-1:exon:15203;Parent=Msa0371970-mRNA-1 |
| chr3_1 | exon | 70271781 | 70272131 | 70271781 | ID=Msa0371970-mRNA-1:exon:15204;Parent=Msa0371970-mRNA-1 |
| chr3_1 | CDS | 70269560 | 70269743 | 70269560 | ID=Msa0371970-mRNA-1:cds;Parent=Msa0371970-mRNA-1 |
| chr3_1 | CDS | 70269840 | 70269952 | 70269840 | ID=Msa0371970-mRNA-1:cds;Parent=Msa0371970-mRNA-1 |
| chr3_1 | CDS | 70270045 | 70270290 | 70270045 | ID=Msa0371970-mRNA-1:cds;Parent=Msa0371970-mRNA-1 |
| chr3_1 | CDS | 70270466 | 70270546 | 70270466 | ID=Msa0371970-mRNA-1:cds;Parent=Msa0371970-mRNA-1 |
| chr3_1 | CDS | 70270807 | 70271037 | 70270807 | ID=Msa0371970-mRNA-1:cds;Parent=Msa0371970-mRNA-1 |
| chr3_1 | CDS | 70271781 | 70272131 | 70271781 | ID=Msa0371970-mRNA-1:cds;Parent=Msa0371970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
