AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0371990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371990 MtrunA17_Chr3g0113291 93.023 129 0 1 1 120 24 152 1.01e-84 243
Msa0371990 MtrunA17_Chr5g0436971 70.312 128 29 1 1 119 1 128 4.72e-62 185
Msa0371990 MtrunA17_Chr7g0242231 63.025 119 44 0 1 119 1 119 2.86e-52 160
Msa0371990 MtrunA17_Chr2g0316921 55.469 128 48 1 1 119 1 128 1.93e-48 151
Msa0371990 MtrunA17_Chr8g0360291 60.396 101 40 0 1 101 1 101 1.83e-43 138
Msa0371990 MtrunA17_Chr4g0046851 51.969 127 52 2 1 119 1 126 3.27e-42 135
Msa0371990 MtrunA17_Chr3g0127211 51.087 92 45 0 12 103 8 99 1.33e-32 110
Msa0371990 MtrunA17_Chr8g0346501 53.333 90 42 0 12 101 8 97 1.22e-31 107
Msa0371990 MtrunA17_Chr1g0188931 46.392 97 51 1 8 103 3 99 2.04e-31 107
Msa0371990 MtrunA17_Chr2g0316891 50.588 85 33 1 44 119 42 126 1.90e-22 85.1
Msa0371990 MtrunA17_Chr1g0188951 50.909 55 27 0 48 102 1 55 3.42e-16 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371990 AT2G40110.1 75.194 129 22 2 1 119 1 129 3.33e-67 199
Msa0371990 AT2G40110.2 82.692 104 18 0 1 104 1 104 2.79e-62 186
Msa0371990 AT3G11230.1 63.281 128 38 1 1 119 1 128 1.10e-54 167
Msa0371990 AT3G11230.2 63.281 128 38 1 1 119 34 161 2.44e-54 167
Msa0371990 AT3G08990.2 59.375 128 43 1 1 119 1 128 2.16e-52 161
Msa0371990 AT3G08990.1 59.375 128 43 1 1 119 1 128 2.16e-52 161
Msa0371990 AT3G08990.3 59.375 128 43 1 1 119 1 128 2.16e-52 161
Msa0371990 AT3G11230.4 73.267 101 27 0 1 101 1 101 2.79e-52 160
Msa0371990 AT3G11230.3 73.267 101 27 0 1 101 34 134 4.73e-52 160
Msa0371990 AT3G55890.4 63.333 120 38 2 1 120 1 114 6.53e-51 157
Msa0371990 AT3G55890.1 63.333 120 38 2 1 120 1 114 6.53e-51 157
Msa0371990 AT3G55890.3 69.307 101 31 0 1 101 1 101 2.41e-50 155
Msa0371990 AT3G55890.2 69.307 101 31 0 1 101 1 101 2.41e-50 155
Msa0371990 AT2G40110.4 83.133 83 14 0 1 83 1 83 7.08e-50 154
Msa0371990 AT2G40110.3 83.133 83 14 0 1 83 1 83 7.08e-50 154
Msa0371990 AT5G53940.1 68.317 101 32 0 1 101 1 101 9.43e-50 154
Msa0371990 AT4G27745.2 53.333 90 42 0 12 101 8 97 9.39e-33 111
Msa0371990 AT4G27745.3 53.333 90 42 0 12 101 8 97 9.39e-33 111
Msa0371990 AT4G27745.1 53.333 90 42 0 12 101 8 97 9.39e-33 111
Msa0371990 AT4G27745.4 53.333 90 42 0 12 101 8 97 9.39e-33 111
Msa0371990 AT4G27740.1 43.182 88 50 0 14 101 10 97 3.72e-21 81.6

Find 28 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTTCCTTCCTTGTACTTT+TGG 0.231498 3_1:-70284742 None:intergenic
TCATCTTCTTCGCAGATTCA+TGG 0.367324 3_1:+70282984 Msa0371990:intron
CATCTTCTTCGCAGATTCAT+GGG 0.371578 3_1:+70282985 Msa0371990:intron
GAGGAGAGACCGATGATGAC+TGG 0.424174 3_1:+70284555 Msa0371990:CDS
GTCCTGATGGTAGCAATTAT+CGG 0.430362 3_1:+70285178 Msa0371990:intron
GAGATAAGCTTTCCCATGCC+TGG 0.451402 3_1:-70283946 None:intergenic
GACAGCGTGAATGTTTCTCT+TGG 0.452417 3_1:+70284525 Msa0371990:intron
TTGTTTGTGATCAATCTAGA+AGG 0.468502 3_1:+70283012 Msa0371990:CDS
GTGGGTTGTGGATCGATTGT+GGG 0.474305 3_1:+70284606 Msa0371990:CDS
TGTGGGTTGTGGATCGATTG+TGG 0.505248 3_1:+70284605 Msa0371990:CDS
TAGACTTTCCACTCCAGGCA+TGG 0.508508 3_1:+70283933 Msa0371990:intron
AGACTTTCCACTCCAGGCAT+GGG 0.512987 3_1:+70283934 Msa0371990:intron
TGTCTTCATATAAAGCAAGA+TGG 0.516171 3_1:-70283065 None:intergenic
GTTGTGGATCGATTGTGGGT+TGG 0.527280 3_1:+70284610 Msa0371990:CDS
ATATGAAGACATCGTTTCCA+AGG 0.539876 3_1:+70283077 Msa0371990:CDS
GTCTTCATATAAAGCAAGAT+GGG 0.551967 3_1:-70283064 None:intergenic
AACAATGGAGCACATGTTGG+CGG 0.552605 3_1:+70285204 Msa0371990:CDS
AAGGAAAGTCTGTGCTTGAA+AGG 0.559471 3_1:+70284756 Msa0371990:CDS
ATCAACAATGGAGCACATGT+TGG 0.564033 3_1:+70285201 Msa0371990:CDS
AGCAATTATCGGATCAACAA+TGG 0.565705 3_1:+70285189 Msa0371990:intron
AAAGACCAAAAGTACAAGGA+AGG 0.567472 3_1:+70284737 Msa0371990:CDS
AGGAGAGACCGATGATGACT+GGG 0.570959 3_1:+70284556 Msa0371990:CDS
ATGGGTGCGACAGTATCTGC+AGG 0.576144 3_1:-70283046 None:intergenic
ATCTTCTTCGCAGATTCATG+GGG 0.576917 3_1:+70282986 Msa0371990:intron
AAGCTTTCCCATGCCTGGAG+TGG 0.589161 3_1:-70283941 None:intergenic
GTATGCAACCCAGTCATCAT+CGG 0.616477 3_1:-70284564 None:intergenic
TGTTTCTCTTGGCGAAACAG+AGG 0.620615 3_1:+70284536 Msa0371990:CDS
TGCAGTTGTTGTAAGAAACG+TGG 0.670568 3_1:-70282862 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTGTAATTATTTTTC+TGG + chr3_1:70283133-70283152 Msa0371990:intron 10.0%
!!! AAATTAAAAAACTAACATTT+TGG - chr3_1:70284438-70284457 None:intergenic 10.0%
!!! TTTTTTTGTAATTATTTTTC+TGG + chr3_1:70283133-70283152 Msa0371990:intron 10.0%
!!! AAATTAAAAAACTAACATTT+TGG - chr3_1:70284438-70284457 None:intergenic 10.0%
!!! AAGTCTAAAATAATAACATA+GGG - chr3_1:70283920-70283939 None:intergenic 15.0%
!!! AAAGTCTAAAATAATAACAT+AGG - chr3_1:70283921-70283940 None:intergenic 15.0%
!!! ATGTTTTATTTCAATTTCTT+AGG - chr3_1:70284015-70284034 None:intergenic 15.0%
!!! TTTTAAATTAGAGTTACTTA+TGG + chr3_1:70284358-70284377 Msa0371990:intron 15.0%
!!! AATGTTAGTTTTTTAATTTG+TGG + chr3_1:70284439-70284458 Msa0371990:intron 15.0%
!!! TAAGATGTTTTAATAAACAT+GGG - chr3_1:70284972-70284991 None:intergenic 15.0%
!!! ATAAGATGTTTTAATAAACA+TGG - chr3_1:70284973-70284992 None:intergenic 15.0%
!!! AAGTCTAAAATAATAACATA+GGG - chr3_1:70283920-70283939 None:intergenic 15.0%
!!! AAAGTCTAAAATAATAACAT+AGG - chr3_1:70283921-70283940 None:intergenic 15.0%
!!! ATGTTTTATTTCAATTTCTT+AGG - chr3_1:70284015-70284034 None:intergenic 15.0%
!!! TTTTAAATTAGAGTTACTTA+TGG + chr3_1:70284358-70284377 Msa0371990:intron 15.0%
!!! AATGTTAGTTTTTTAATTTG+TGG + chr3_1:70284439-70284458 Msa0371990:intron 15.0%
!!! TAAGATGTTTTAATAAACAT+GGG - chr3_1:70284972-70284991 None:intergenic 15.0%
!!! ATAAGATGTTTTAATAAACA+TGG - chr3_1:70284973-70284992 None:intergenic 15.0%
!!! GTTACAATTCTGAAAAATTT+AGG + chr3_1:70283794-70283813 Msa0371990:intron 20.0%
!!! ATTTATGGTAATTTTGTTGT+TGG + chr3_1:70283837-70283856 Msa0371990:intron 20.0%
!!! TTTATGGTAATTTTGTTGTT+GGG + chr3_1:70283838-70283857 Msa0371990:intron 20.0%
!! AAAAACTCAATTAAGAATTG+GGG - chr3_1:70283866-70283885 None:intergenic 20.0%
!! GAAAAACTCAATTAAGAATT+GGG - chr3_1:70283867-70283886 None:intergenic 20.0%
!! TGAAAAACTCAATTAAGAAT+TGG - chr3_1:70283868-70283887 None:intergenic 20.0%
!!! ACTTGATAGATAAATTTTAG+CGG - chr3_1:70284326-70284345 None:intergenic 20.0%
!! AATATGAAATCATATCATTG+CGG + chr3_1:70284384-70284403 Msa0371990:intron 20.0%
!! TCAATTATATCCTTAAAAAG+AGG - chr3_1:70284483-70284502 None:intergenic 20.0%
!! AATCTAAACCATTACATAAT+TGG - chr3_1:70285121-70285140 None:intergenic 20.0%
!!! ATTAGATGAATTGTGTTATT+GGG + chr3_1:70285138-70285157 Msa0371990:intron 20.0%
!!! GTTACAATTCTGAAAAATTT+AGG + chr3_1:70283794-70283813 Msa0371990:intron 20.0%
!!! ATTTATGGTAATTTTGTTGT+TGG + chr3_1:70283837-70283856 Msa0371990:intron 20.0%
!!! TTTATGGTAATTTTGTTGTT+GGG + chr3_1:70283838-70283857 Msa0371990:intron 20.0%
!! AAAAACTCAATTAAGAATTG+GGG - chr3_1:70283866-70283885 None:intergenic 20.0%
!! GAAAAACTCAATTAAGAATT+GGG - chr3_1:70283867-70283886 None:intergenic 20.0%
!! TGAAAAACTCAATTAAGAAT+TGG - chr3_1:70283868-70283887 None:intergenic 20.0%
!!! ACTTGATAGATAAATTTTAG+CGG - chr3_1:70284326-70284345 None:intergenic 20.0%
!! AATATGAAATCATATCATTG+CGG + chr3_1:70284384-70284403 Msa0371990:intron 20.0%
!! TCAATTATATCCTTAAAAAG+AGG - chr3_1:70284483-70284502 None:intergenic 20.0%
!! AATCTAAACCATTACATAAT+TGG - chr3_1:70285121-70285140 None:intergenic 20.0%
!!! ATTAGATGAATTGTGTTATT+GGG + chr3_1:70285138-70285157 Msa0371990:intron 20.0%
! GATAAAGAAGAAGAAATGAA+TGG - chr3_1:70282933-70282952 None:intergenic 25.0%
! ACTGATGAATAAACAATGAA+TGG - chr3_1:70283180-70283199 None:intergenic 25.0%
! CACTGTTCTATTTATTATCT+TGG + chr3_1:70283346-70283365 Msa0371990:intron 25.0%
! GTTCTATTTATTATCTTGGT+TGG + chr3_1:70283350-70283369 Msa0371990:intron 25.0%
! ACATTGAGTAGTAGTATTAT+AGG + chr3_1:70283385-70283404 Msa0371990:intron 25.0%
! AGTAGTATTATAGGCTAAAT+TGG + chr3_1:70283394-70283413 Msa0371990:intron 25.0%
!!! GTTTATTTTAGACTTCAAGT+TGG + chr3_1:70283433-70283452 Msa0371990:intron 25.0%
! ATATTTACAAAGTTTCAAGC+TGG + chr3_1:70283462-70283481 Msa0371990:intron 25.0%
! TTAGTAACGTTACAATAAGT+TGG + chr3_1:70283494-70283513 Msa0371990:intron 25.0%
! ACTTATAATATGTGGCAAAA+AGG - chr3_1:70283521-70283540 None:intergenic 25.0%
! CAATGTGAACTTATAATATG+TGG - chr3_1:70283529-70283548 None:intergenic 25.0%
!! TCATTATCCAATAGTATTGA+GGG - chr3_1:70283733-70283752 None:intergenic 25.0%
! ATCATTATCCAATAGTATTG+AGG - chr3_1:70283734-70283753 None:intergenic 25.0%
! ACTATTGGATAATGATGATA+TGG + chr3_1:70283738-70283757 Msa0371990:intron 25.0%
!! AACACTAGCATTATTTTCTT+TGG - chr3_1:70283777-70283796 None:intergenic 25.0%
!!! TGTTTTCTTCTGGAAATTTA+TGG + chr3_1:70283822-70283841 Msa0371990:intron 25.0%
! AAAACTCAATTAAGAATTGG+GGG - chr3_1:70283865-70283884 None:intergenic 25.0%
! GTTTAAAAAGAAGAAAGAGA+AGG + chr3_1:70284086-70284105 Msa0371990:intron 25.0%
!!! ATTTTAGCGGTTAACTTTTT+AGG - chr3_1:70284313-70284332 None:intergenic 25.0%
! GTAACTCTAATTTAAAAGCT+TGG - chr3_1:70284355-70284374 None:intergenic 25.0%
! TGGAAATATGTAAGATTATG+AGG + chr3_1:70284630-70284649 Msa0371990:intron 25.0%
! ACTAAAAGCTACATAAAAGA+AGG - chr3_1:70284681-70284700 None:intergenic 25.0%
! GACATCACTTTGATTATATT+AGG - chr3_1:70284809-70284828 None:intergenic 25.0%
! GATTAGATGAATTGTGTTAT+TGG + chr3_1:70285137-70285156 Msa0371990:intron 25.0%
! GATAAAGAAGAAGAAATGAA+TGG - chr3_1:70282933-70282952 None:intergenic 25.0%
! ACTGATGAATAAACAATGAA+TGG - chr3_1:70283180-70283199 None:intergenic 25.0%
! CACTGTTCTATTTATTATCT+TGG + chr3_1:70283346-70283365 Msa0371990:intron 25.0%
! GTTCTATTTATTATCTTGGT+TGG + chr3_1:70283350-70283369 Msa0371990:intron 25.0%
! ACATTGAGTAGTAGTATTAT+AGG + chr3_1:70283385-70283404 Msa0371990:intron 25.0%
! AGTAGTATTATAGGCTAAAT+TGG + chr3_1:70283394-70283413 Msa0371990:intron 25.0%
!!! GTTTATTTTAGACTTCAAGT+TGG + chr3_1:70283433-70283452 Msa0371990:intron 25.0%
! ATATTTACAAAGTTTCAAGC+TGG + chr3_1:70283462-70283481 Msa0371990:intron 25.0%
! TTAGTAACGTTACAATAAGT+TGG + chr3_1:70283494-70283513 Msa0371990:intron 25.0%
! ACTTATAATATGTGGCAAAA+AGG - chr3_1:70283521-70283540 None:intergenic 25.0%
! CAATGTGAACTTATAATATG+TGG - chr3_1:70283529-70283548 None:intergenic 25.0%
!! TCATTATCCAATAGTATTGA+GGG - chr3_1:70283733-70283752 None:intergenic 25.0%
! ATCATTATCCAATAGTATTG+AGG - chr3_1:70283734-70283753 None:intergenic 25.0%
! ACTATTGGATAATGATGATA+TGG + chr3_1:70283738-70283757 Msa0371990:intron 25.0%
!! AACACTAGCATTATTTTCTT+TGG - chr3_1:70283777-70283796 None:intergenic 25.0%
!!! TGTTTTCTTCTGGAAATTTA+TGG + chr3_1:70283822-70283841 Msa0371990:intron 25.0%
! AAAACTCAATTAAGAATTGG+GGG - chr3_1:70283865-70283884 None:intergenic 25.0%
! GTTTAAAAAGAAGAAAGAGA+AGG + chr3_1:70284086-70284105 Msa0371990:intron 25.0%
!!! ATTTTAGCGGTTAACTTTTT+AGG - chr3_1:70284313-70284332 None:intergenic 25.0%
! GTAACTCTAATTTAAAAGCT+TGG - chr3_1:70284355-70284374 None:intergenic 25.0%
! TGGAAATATGTAAGATTATG+AGG + chr3_1:70284630-70284649 Msa0371990:intron 25.0%
! ACTAAAAGCTACATAAAAGA+AGG - chr3_1:70284681-70284700 None:intergenic 25.0%
! GACATCACTTTGATTATATT+AGG - chr3_1:70284809-70284828 None:intergenic 25.0%
! GATTAGATGAATTGTGTTAT+TGG + chr3_1:70285137-70285156 Msa0371990:intron 25.0%
TTGTTTGTGATCAATCTAGA+AGG + chr3_1:70283012-70283031 Msa0371990:CDS 30.0%
GTCTTCATATAAAGCAAGAT+GGG - chr3_1:70283067-70283086 None:intergenic 30.0%
TGTCTTCATATAAAGCAAGA+TGG - chr3_1:70283068-70283087 None:intergenic 30.0%
AAAAAAAGAGAGAGAGAGAA+AGG - chr3_1:70283117-70283136 None:intergenic 30.0%
TACCAATTCATTTGTGTTCA+TGG + chr3_1:70283219-70283238 Msa0371990:intron 30.0%
AACCATGAACACAAATGAAT+TGG - chr3_1:70283224-70283243 None:intergenic 30.0%
ACATTAGACATACATCATTG+TGG - chr3_1:70283617-70283636 None:intergenic 30.0%
!! AATTTGTTGAGAATCAATGC+TGG - chr3_1:70283708-70283727 None:intergenic 30.0%
AAATTCTCCCTCAATACTAT+TGG + chr3_1:70283723-70283742 Msa0371990:intron 30.0%
ATTGGATAATGATGATATGG+AGG + chr3_1:70283741-70283760 Msa0371990:intron 30.0%
!!! TTAGGCTTTTTGTTTTCTTC+TGG + chr3_1:70283812-70283831 Msa0371990:intron 30.0%
AAACTCAATTAAGAATTGGG+GGG - chr3_1:70283864-70283883 None:intergenic 30.0%
ATAATAAGATGATGCACAAG+CGG - chr3_1:70284167-70284186 None:intergenic 30.0%
!! ACACTAAAGGAGTATTAAGA+AGG + chr3_1:70284245-70284264 Msa0371990:intron 30.0%
!! TAACATTTTGGTCAACACTT+TGG - chr3_1:70284426-70284445 None:intergenic 30.0%
!! GTAGCTTTTAGTTACAGAAA+TGG + chr3_1:70284689-70284708 Msa0371990:intron 30.0%
CATAAAGAGTCTCTTTAGAT+TGG + chr3_1:70284837-70284856 Msa0371990:intron 30.0%
! GTTTATTTGAGATTATCCAC+TGG + chr3_1:70284859-70284878 Msa0371990:intron 30.0%
AGACTATTTGAGAGAACTTA+TGG + chr3_1:70284896-70284915 Msa0371990:intron 30.0%
TACATAATTGGACTCTGTTT+GGG - chr3_1:70285109-70285128 None:intergenic 30.0%
TTACATAATTGGACTCTGTT+TGG - chr3_1:70285110-70285129 None:intergenic 30.0%
AACAGAGTCCAATTATGTAA+TGG + chr3_1:70285110-70285129 Msa0371990:intron 30.0%
TTGTTTGTGATCAATCTAGA+AGG + chr3_1:70283012-70283031 Msa0371990:CDS 30.0%
GTCTTCATATAAAGCAAGAT+GGG - chr3_1:70283067-70283086 None:intergenic 30.0%
TGTCTTCATATAAAGCAAGA+TGG - chr3_1:70283068-70283087 None:intergenic 30.0%
AAAAAAAGAGAGAGAGAGAA+AGG - chr3_1:70283117-70283136 None:intergenic 30.0%
TACCAATTCATTTGTGTTCA+TGG + chr3_1:70283219-70283238 Msa0371990:intron 30.0%
AACCATGAACACAAATGAAT+TGG - chr3_1:70283224-70283243 None:intergenic 30.0%
ACATTAGACATACATCATTG+TGG - chr3_1:70283617-70283636 None:intergenic 30.0%
!! AATTTGTTGAGAATCAATGC+TGG - chr3_1:70283708-70283727 None:intergenic 30.0%
AAATTCTCCCTCAATACTAT+TGG + chr3_1:70283723-70283742 Msa0371990:intron 30.0%
ATTGGATAATGATGATATGG+AGG + chr3_1:70283741-70283760 Msa0371990:intron 30.0%
!!! TTAGGCTTTTTGTTTTCTTC+TGG + chr3_1:70283812-70283831 Msa0371990:intron 30.0%
AAACTCAATTAAGAATTGGG+GGG - chr3_1:70283864-70283883 None:intergenic 30.0%
ATAATAAGATGATGCACAAG+CGG - chr3_1:70284167-70284186 None:intergenic 30.0%
!! ACACTAAAGGAGTATTAAGA+AGG + chr3_1:70284245-70284264 Msa0371990:intron 30.0%
!! TAACATTTTGGTCAACACTT+TGG - chr3_1:70284426-70284445 None:intergenic 30.0%
!! GTAGCTTTTAGTTACAGAAA+TGG + chr3_1:70284689-70284708 Msa0371990:intron 30.0%
CATAAAGAGTCTCTTTAGAT+TGG + chr3_1:70284837-70284856 Msa0371990:intron 30.0%
! GTTTATTTGAGATTATCCAC+TGG + chr3_1:70284859-70284878 Msa0371990:intron 30.0%
AGACTATTTGAGAGAACTTA+TGG + chr3_1:70284896-70284915 Msa0371990:intron 30.0%
TACATAATTGGACTCTGTTT+GGG - chr3_1:70285109-70285128 None:intergenic 30.0%
TTACATAATTGGACTCTGTT+TGG - chr3_1:70285110-70285129 None:intergenic 30.0%
AACAGAGTCCAATTATGTAA+TGG + chr3_1:70285110-70285129 Msa0371990:intron 30.0%
TGGTTGAAGATTAACGTTAC+CGG - chr3_1:70282913-70282932 None:intergenic 35.0%
ATATGAAGACATCGTTTCCA+AGG + chr3_1:70283077-70283096 Msa0371990:CDS 35.0%
AGAGAGAAAGGTGATGAAAA+AGG - chr3_1:70283105-70283124 None:intergenic 35.0%
!! TATTTTAGACTTTCCACTCC+AGG + chr3_1:70283928-70283947 Msa0371990:intron 35.0%
TGCGAAGACATTACCATTAT+TGG - chr3_1:70284062-70284081 None:intergenic 35.0%
TAATAAGATGATGCACAAGC+GGG - chr3_1:70284166-70284185 None:intergenic 35.0%
!! CTAAAGGAGTATTAAGAAGG+AGG + chr3_1:70284248-70284267 Msa0371990:intron 35.0%
AGTATTAAGAAGGAGGTTCA+GGG + chr3_1:70284255-70284274 Msa0371990:intron 35.0%
!! GTTAACTTTTTAGGAGGAGA+GGG - chr3_1:70284304-70284323 None:intergenic 35.0%
!! TTAGCGGTTAACTTTTTAGG+AGG - chr3_1:70284310-70284329 None:intergenic 35.0%
! TTTGCAGTTGCCTCTTTTTA+AGG + chr3_1:70284470-70284489 Msa0371990:intron 35.0%
! TTACAGAAATGGTGCTTTTC+AGG + chr3_1:70284700-70284719 Msa0371990:intron 35.0%
!! GTACTTTTGGTCTTTTTCGT+GGG - chr3_1:70284732-70284751 None:intergenic 35.0%
!! TGTACTTTTGGTCTTTTTCG+TGG - chr3_1:70284733-70284752 None:intergenic 35.0%
! CGAAAAAGACCAAAAGTACA+AGG + chr3_1:70284733-70284752 Msa0371990:CDS 35.0%
! AAAGACCAAAAGTACAAGGA+AGG + chr3_1:70284737-70284756 Msa0371990:CDS 35.0%
! ACTTTCCTTCCTTGTACTTT+TGG - chr3_1:70284745-70284764 None:intergenic 35.0%
AGCAATTATCGGATCAACAA+TGG + chr3_1:70285189-70285208 Msa0371990:intron 35.0%
TGGTTGAAGATTAACGTTAC+CGG - chr3_1:70282913-70282932 None:intergenic 35.0%
ATATGAAGACATCGTTTCCA+AGG + chr3_1:70283077-70283096 Msa0371990:CDS 35.0%
AGAGAGAAAGGTGATGAAAA+AGG - chr3_1:70283105-70283124 None:intergenic 35.0%
!! TATTTTAGACTTTCCACTCC+AGG + chr3_1:70283928-70283947 Msa0371990:intron 35.0%
TGCGAAGACATTACCATTAT+TGG - chr3_1:70284062-70284081 None:intergenic 35.0%
TAATAAGATGATGCACAAGC+GGG - chr3_1:70284166-70284185 None:intergenic 35.0%
!! CTAAAGGAGTATTAAGAAGG+AGG + chr3_1:70284248-70284267 Msa0371990:intron 35.0%
AGTATTAAGAAGGAGGTTCA+GGG + chr3_1:70284255-70284274 Msa0371990:intron 35.0%
!! GTTAACTTTTTAGGAGGAGA+GGG - chr3_1:70284304-70284323 None:intergenic 35.0%
!! TTAGCGGTTAACTTTTTAGG+AGG - chr3_1:70284310-70284329 None:intergenic 35.0%
! TTTGCAGTTGCCTCTTTTTA+AGG + chr3_1:70284470-70284489 Msa0371990:intron 35.0%
! TTACAGAAATGGTGCTTTTC+AGG + chr3_1:70284700-70284719 Msa0371990:intron 35.0%
!! GTACTTTTGGTCTTTTTCGT+GGG - chr3_1:70284732-70284751 None:intergenic 35.0%
!! TGTACTTTTGGTCTTTTTCG+TGG - chr3_1:70284733-70284752 None:intergenic 35.0%
! CGAAAAAGACCAAAAGTACA+AGG + chr3_1:70284733-70284752 Msa0371990:CDS 35.0%
! AAAGACCAAAAGTACAAGGA+AGG + chr3_1:70284737-70284756 Msa0371990:CDS 35.0%
! ACTTTCCTTCCTTGTACTTT+TGG - chr3_1:70284745-70284764 None:intergenic 35.0%
AGCAATTATCGGATCAACAA+TGG + chr3_1:70285189-70285208 Msa0371990:intron 35.0%
TGCAGTTGTTGTAAGAAACG+TGG - chr3_1:70282865-70282884 None:intergenic 40.0%
TCATCTTCTTCGCAGATTCA+TGG + chr3_1:70282984-70283003 Msa0371990:intron 40.0%
CATCTTCTTCGCAGATTCAT+GGG + chr3_1:70282985-70283004 Msa0371990:intron 40.0%
ATCTTCTTCGCAGATTCATG+GGG + chr3_1:70282986-70283005 Msa0371990:intron 40.0%
AGGTGATGAAAAAGGAACCT+TGG - chr3_1:70283097-70283116 None:intergenic 40.0%
GCTGGTTACGATTTACAACT+TGG - chr3_1:70283690-70283709 None:intergenic 40.0%
GACATTACCATTATTGGCGA+CGG - chr3_1:70284056-70284075 None:intergenic 40.0%
! AATGGTAATGTCTTCGCATG+TGG + chr3_1:70284064-70284083 Msa0371990:intron 40.0%
! GTATCGTACTGGTATGAGTT+TGG + chr3_1:70284222-70284241 Msa0371990:intron 40.0%
GGTATGAGTTTGGACACTAA+AGG + chr3_1:70284232-70284251 Msa0371990:intron 40.0%
GAGTATTAAGAAGGAGGTTC+AGG + chr3_1:70284254-70284273 Msa0371990:intron 40.0%
!! GGTTAACTTTTTAGGAGGAG+AGG - chr3_1:70284305-70284324 None:intergenic 40.0%
! TGTAGCTGACATTTTCTGTG+TGG + chr3_1:70284587-70284606 Msa0371990:CDS 40.0%
! GTAGCTGACATTTTCTGTGT+GGG + chr3_1:70284588-70284607 Msa0371990:CDS 40.0%
AAGGAAAGTCTGTGCTTGAA+AGG + chr3_1:70284756-70284775 Msa0371990:CDS 40.0%
! GATGAATTGTGTTATTGGGC+AGG + chr3_1:70285142-70285161 Msa0371990:intron 40.0%
GTCCTGATGGTAGCAATTAT+CGG + chr3_1:70285178-70285197 Msa0371990:intron 40.0%
ATCCGATAATTGCTACCATC+AGG - chr3_1:70285183-70285202 None:intergenic 40.0%
ATCAACAATGGAGCACATGT+TGG + chr3_1:70285201-70285220 Msa0371990:CDS 40.0%
TGCAGTTGTTGTAAGAAACG+TGG - chr3_1:70282865-70282884 None:intergenic 40.0%
TCATCTTCTTCGCAGATTCA+TGG + chr3_1:70282984-70283003 Msa0371990:intron 40.0%
CATCTTCTTCGCAGATTCAT+GGG + chr3_1:70282985-70283004 Msa0371990:intron 40.0%
ATCTTCTTCGCAGATTCATG+GGG + chr3_1:70282986-70283005 Msa0371990:intron 40.0%
AGGTGATGAAAAAGGAACCT+TGG - chr3_1:70283097-70283116 None:intergenic 40.0%
GCTGGTTACGATTTACAACT+TGG - chr3_1:70283690-70283709 None:intergenic 40.0%
GACATTACCATTATTGGCGA+CGG - chr3_1:70284056-70284075 None:intergenic 40.0%
! AATGGTAATGTCTTCGCATG+TGG + chr3_1:70284064-70284083 Msa0371990:intron 40.0%
! GTATCGTACTGGTATGAGTT+TGG + chr3_1:70284222-70284241 Msa0371990:intron 40.0%
GGTATGAGTTTGGACACTAA+AGG + chr3_1:70284232-70284251 Msa0371990:intron 40.0%
GAGTATTAAGAAGGAGGTTC+AGG + chr3_1:70284254-70284273 Msa0371990:intron 40.0%
!! GGTTAACTTTTTAGGAGGAG+AGG - chr3_1:70284305-70284324 None:intergenic 40.0%
! TGTAGCTGACATTTTCTGTG+TGG + chr3_1:70284587-70284606 Msa0371990:CDS 40.0%
! GTAGCTGACATTTTCTGTGT+GGG + chr3_1:70284588-70284607 Msa0371990:CDS 40.0%
AAGGAAAGTCTGTGCTTGAA+AGG + chr3_1:70284756-70284775 Msa0371990:CDS 40.0%
! GATGAATTGTGTTATTGGGC+AGG + chr3_1:70285142-70285161 Msa0371990:intron 40.0%
GTCCTGATGGTAGCAATTAT+CGG + chr3_1:70285178-70285197 Msa0371990:intron 40.0%
ATCCGATAATTGCTACCATC+AGG - chr3_1:70285183-70285202 None:intergenic 40.0%
ATCAACAATGGAGCACATGT+TGG + chr3_1:70285201-70285220 Msa0371990:CDS 40.0%
ATTGAGACCGTCGCCAATAA+TGG + chr3_1:70284046-70284065 Msa0371990:intron 45.0%
TATGTCGATCAAGTCCCTGA+AGG + chr3_1:70284198-70284217 Msa0371990:intron 45.0%
ACCAGTACGATACACCTTCA+GGG - chr3_1:70284215-70284234 None:intergenic 45.0%
TACCAGTACGATACACCTTC+AGG - chr3_1:70284216-70284235 None:intergenic 45.0%
GACAGCGTGAATGTTTCTCT+TGG + chr3_1:70284525-70284544 Msa0371990:intron 45.0%
TGTTTCTCTTGGCGAAACAG+AGG + chr3_1:70284536-70284555 Msa0371990:CDS 45.0%
GTATGCAACCCAGTCATCAT+CGG - chr3_1:70284567-70284586 None:intergenic 45.0%
!! GACATTTTCTGTGTGGGTTG+TGG + chr3_1:70284594-70284613 Msa0371990:CDS 45.0%
CTTACAAGTGCTTATGCCAG+TGG - chr3_1:70284878-70284897 None:intergenic 45.0%
! TGTGTTATTGGGCAGGTACA+AGG + chr3_1:70285149-70285168 Msa0371990:intron 45.0%
! TACAAGGTATCAGGTCCTGA+TGG + chr3_1:70285165-70285184 Msa0371990:intron 45.0%
AACAATGGAGCACATGTTGG+CGG + chr3_1:70285204-70285223 Msa0371990:CDS 45.0%
ATTGAGACCGTCGCCAATAA+TGG + chr3_1:70284046-70284065 Msa0371990:intron 45.0%
TATGTCGATCAAGTCCCTGA+AGG + chr3_1:70284198-70284217 Msa0371990:intron 45.0%
ACCAGTACGATACACCTTCA+GGG - chr3_1:70284215-70284234 None:intergenic 45.0%
TACCAGTACGATACACCTTC+AGG - chr3_1:70284216-70284235 None:intergenic 45.0%
GACAGCGTGAATGTTTCTCT+TGG + chr3_1:70284525-70284544 Msa0371990:intron 45.0%
TGTTTCTCTTGGCGAAACAG+AGG + chr3_1:70284536-70284555 Msa0371990:CDS 45.0%
GTATGCAACCCAGTCATCAT+CGG - chr3_1:70284567-70284586 None:intergenic 45.0%
!! GACATTTTCTGTGTGGGTTG+TGG + chr3_1:70284594-70284613 Msa0371990:CDS 45.0%
CTTACAAGTGCTTATGCCAG+TGG - chr3_1:70284878-70284897 None:intergenic 45.0%
! TGTGTTATTGGGCAGGTACA+AGG + chr3_1:70285149-70285168 Msa0371990:intron 45.0%
! TACAAGGTATCAGGTCCTGA+TGG + chr3_1:70285165-70285184 Msa0371990:intron 45.0%
AACAATGGAGCACATGTTGG+CGG + chr3_1:70285204-70285223 Msa0371990:CDS 45.0%
CAACAGACACACACACACAC+CGG + chr3_1:70282891-70282910 Msa0371990:five_prime_UTR 50.0%
TAGACTTTCCACTCCAGGCA+TGG + chr3_1:70283933-70283952 Msa0371990:intron 50.0%
AGACTTTCCACTCCAGGCAT+GGG + chr3_1:70283934-70283953 Msa0371990:intron 50.0%
GAGATAAGCTTTCCCATGCC+TGG - chr3_1:70283949-70283968 None:intergenic 50.0%
! TCCCTGAAGGTGTATCGTAC+TGG + chr3_1:70284211-70284230 Msa0371990:intron 50.0%
AGGAGAGACCGATGATGACT+GGG + chr3_1:70284556-70284575 Msa0371990:CDS 50.0%
! TGTGGGTTGTGGATCGATTG+TGG + chr3_1:70284605-70284624 Msa0371990:CDS 50.0%
! GTGGGTTGTGGATCGATTGT+GGG + chr3_1:70284606-70284625 Msa0371990:CDS 50.0%
GTTGTGGATCGATTGTGGGT+TGG + chr3_1:70284610-70284629 Msa0371990:CDS 50.0%
! TTGGGCAGGTACAAGGTATC+AGG + chr3_1:70285156-70285175 Msa0371990:intron 50.0%
CAACAGACACACACACACAC+CGG + chr3_1:70282891-70282910 Msa0371990:five_prime_UTR 50.0%
TAGACTTTCCACTCCAGGCA+TGG + chr3_1:70283933-70283952 Msa0371990:intron 50.0%
AGACTTTCCACTCCAGGCAT+GGG + chr3_1:70283934-70283953 Msa0371990:intron 50.0%
GAGATAAGCTTTCCCATGCC+TGG - chr3_1:70283949-70283968 None:intergenic 50.0%
! TCCCTGAAGGTGTATCGTAC+TGG + chr3_1:70284211-70284230 Msa0371990:intron 50.0%
AGGAGAGACCGATGATGACT+GGG + chr3_1:70284556-70284575 Msa0371990:CDS 50.0%
! TGTGGGTTGTGGATCGATTG+TGG + chr3_1:70284605-70284624 Msa0371990:CDS 50.0%
! GTGGGTTGTGGATCGATTGT+GGG + chr3_1:70284606-70284625 Msa0371990:CDS 50.0%
GTTGTGGATCGATTGTGGGT+TGG + chr3_1:70284610-70284629 Msa0371990:CDS 50.0%
! TTGGGCAGGTACAAGGTATC+AGG + chr3_1:70285156-70285175 Msa0371990:intron 50.0%
CGGTGTGTGTGTGTGTCTGT+TGG - chr3_1:70282893-70282912 None:intergenic 55.0%
ATGGGTGCGACAGTATCTGC+AGG - chr3_1:70283049-70283068 None:intergenic 55.0%
AAGCTTTCCCATGCCTGGAG+TGG - chr3_1:70283944-70283963 None:intergenic 55.0%
ATGATGCACAAGCGGGCATG+TGG - chr3_1:70284159-70284178 None:intergenic 55.0%
GAGGAGAGACCGATGATGAC+TGG + chr3_1:70284555-70284574 Msa0371990:CDS 55.0%
CGGTGTGTGTGTGTGTCTGT+TGG - chr3_1:70282893-70282912 None:intergenic 55.0%
ATGGGTGCGACAGTATCTGC+AGG - chr3_1:70283049-70283068 None:intergenic 55.0%
AAGCTTTCCCATGCCTGGAG+TGG - chr3_1:70283944-70283963 None:intergenic 55.0%
ATGATGCACAAGCGGGCATG+TGG - chr3_1:70284159-70284178 None:intergenic 55.0%
GAGGAGAGACCGATGATGAC+TGG + chr3_1:70284555-70284574 Msa0371990:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 70282842 70285245 70282842 ID=Msa0371990;Name=Msa0371990
chr3_1 mRNA 70282842 70285245 70282842 ID=Msa0371990-mRNA-1;Parent=Msa0371990;Name=Msa0371990-mRNA-1;_AED=0.31;_eAED=0.31;_QI=75|0.8|0.83|1|0|0.16|6|0|120
chr3_1 exon 70282842 70282912 70282842 ID=Msa0371990-mRNA-1:exon:15212;Parent=Msa0371990-mRNA-1
chr3_1 exon 70282999 70283098 70282999 ID=Msa0371990-mRNA-1:exon:15213;Parent=Msa0371990-mRNA-1
chr3_1 exon 70283936 70283979 70283936 ID=Msa0371990-mRNA-1:exon:15214;Parent=Msa0371990-mRNA-1
chr3_1 exon 70284530 70284638 70284530 ID=Msa0371990-mRNA-1:exon:15215;Parent=Msa0371990-mRNA-1
chr3_1 exon 70284722 70284777 70284722 ID=Msa0371990-mRNA-1:exon:15216;Parent=Msa0371990-mRNA-1
chr3_1 exon 70285191 70285245 70285191 ID=Msa0371990-mRNA-1:exon:15217;Parent=Msa0371990-mRNA-1
chr3_1 five_prime_UTR 70282842 70282912 70282842 ID=Msa0371990-mRNA-1:five_prime_utr;Parent=Msa0371990-mRNA-1
chr3_1 five_prime_UTR 70282999 70283002 70282999 ID=Msa0371990-mRNA-1:five_prime_utr;Parent=Msa0371990-mRNA-1
chr3_1 CDS 70283003 70283098 70283003 ID=Msa0371990-mRNA-1:cds;Parent=Msa0371990-mRNA-1
chr3_1 CDS 70283936 70283979 70283936 ID=Msa0371990-mRNA-1:cds;Parent=Msa0371990-mRNA-1
chr3_1 CDS 70284530 70284638 70284530 ID=Msa0371990-mRNA-1:cds;Parent=Msa0371990-mRNA-1
chr3_1 CDS 70284722 70284777 70284722 ID=Msa0371990-mRNA-1:cds;Parent=Msa0371990-mRNA-1
chr3_1 CDS 70285191 70285245 70285191 ID=Msa0371990-mRNA-1:cds;Parent=Msa0371990-mRNA-1
Gene Sequence

>Msa0371990

ATGGGGAGATTGTTTGTGATCAATCTAGAAGGTAAGATCTATTCCTGCAGATACTGTCGCACCCATCTTGCTTTATATGAAGACATCGTTTCCAAGACTTTCCACTCCAGGCATGGGAAAGCTTATCTCTTCAATAAAGTCGTGAATGTTTCTCTTGGCGAAACAGAGGAGAGACCGATGATGACTGGGTTGCATACTGTAGCTGACATTTTCTGTGTGGGTTGTGGATCGATTGTGGGTTGGAAATATGAGATTGCCCACGAAAAAGACCAAAAGTACAAGGAAGGAAAGTCTGTGCTTGAAAGCAATTATCGGATCAACAATGGAGCACATGTTGGCGGAAGCGATGCAGATGATTTA

Protein sequence

>Msa0371990

MGRLFVINLEGKIYSCRYCRTHLALYEDIVSKTFHSRHGKAYLFNKVVNVSLGETEERPMMTGLHTVADIFCVGCGSIVGWKYEIAHEKDQKYKEGKSVLESNYRINNGAHVGGSDADDL