Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373290 | XP_003601790.1 | 95.074 | 203 | 8 | 1 | 1 | 201 | 1 | 203 | 1.96e-140 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373290 | sp|P92792|TOM20_SOLTU | 58.854 | 192 | 78 | 1 | 5 | 195 | 4 | 195 | 4.74e-69 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373290 | G7JBZ8 | 95.074 | 203 | 8 | 1 | 1 | 201 | 1 | 203 | 9.39e-141 | 400 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0373290 | Msa0421880 | 0.912128 | 2.777050e-83 | -8.615850e-47 |
| Msa0373290 | Msa0467780 | 0.829323 | 5.488152e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373290 | MtrunA17_Chr3g0122551 | 95.074 | 203 | 8 | 1 | 1 | 201 | 1 | 203 | 1.81e-144 | 400 |
| Msa0373290 | MtrunA17_Chr6g0459751 | 58.883 | 197 | 79 | 1 | 1 | 195 | 1 | 197 | 1.69e-81 | 241 |
| Msa0373290 | MtrunA17_Chr6g0467501 | 44.954 | 109 | 60 | 0 | 21 | 129 | 21 | 129 | 8.95e-22 | 92.4 |
| Msa0373290 | MtrunA17_Chr6g0453351 | 38.760 | 129 | 70 | 3 | 7 | 132 | 6 | 128 | 4.75e-21 | 87.4 |
| Msa0373290 | MtrunA17_Chr6g0455921 | 42.727 | 110 | 57 | 1 | 21 | 130 | 8 | 111 | 5.20e-18 | 77.4 |
| Msa0373290 | MtrunA17_Chr7g0262471 | 35.802 | 162 | 98 | 4 | 1 | 159 | 3 | 161 | 5.51e-17 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373290 | AT1G27390.1 | 51.415 | 212 | 86 | 2 | 1 | 199 | 1 | 208 | 4.04e-67 | 205 |
| Msa0373290 | AT3G27080.1 | 49.500 | 200 | 97 | 2 | 4 | 200 | 3 | 201 | 6.86e-65 | 199 |
| Msa0373290 | AT5G40930.1 | 49.735 | 189 | 83 | 3 | 10 | 198 | 9 | 185 | 3.35e-56 | 176 |
| Msa0373290 | AT3G27070.1 | 49.189 | 185 | 91 | 2 | 10 | 192 | 3 | 186 | 7.82e-52 | 165 |
| Msa0373290 | AT1G27390.2 | 51.923 | 156 | 58 | 2 | 57 | 199 | 1 | 152 | 4.46e-47 | 152 |
| Msa0373290 | AT5G40930.2 | 50.000 | 148 | 63 | 2 | 10 | 157 | 9 | 145 | 1.02e-40 | 136 |
| Msa0373290 | AT3G27070.2 | 45.522 | 134 | 70 | 2 | 61 | 192 | 114 | 246 | 1.85e-29 | 109 |
Find 71 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCACGTCCACGGCTTTC+TGG | 0.157506 | 3_1:+72322115 | None:intergenic |
| TATACCTTCAATCATCTTCT+TGG | 0.230166 | 3_1:+72322411 | None:intergenic |
| TTAGATTGGAATTGAGAATT+AGG | 0.236449 | 3_1:-72319871 | Msa0373290:three_prime_UTR |
| TGGATCTCCATGTGTAGTTC+TGG | 0.244886 | 3_1:+72321201 | None:intergenic |
| CAACTAAGCATTACACTCTT+TGG | 0.293381 | 3_1:-72322227 | Msa0373290:CDS |
| CATTACACTCTTTGGTGCTT+GGG | 0.335731 | 3_1:-72322219 | Msa0373290:CDS |
| GTCCTTGAAAGTTGCTCTTA+AGG | 0.339410 | 3_1:-72321982 | Msa0373290:intron |
| CTAAGCCTCGGAGAGGAAAA+TGG | 0.341773 | 3_1:-72319784 | Msa0373290:three_prime_UTR |
| AAAGACTATTCAGTTTAGAT+TGG | 0.373093 | 3_1:-72319920 | Msa0373290:three_prime_UTR |
| TTTGGAGAATAACTTTAGAT+TGG | 0.375206 | 3_1:-72319885 | Msa0373290:three_prime_UTR |
| GATCACAGAAGAATTGAATA+TGG | 0.377645 | 3_1:-72323188 | Msa0373290:exon |
| GTTAAGTAATTAACTCGGTT+GGG | 0.381011 | 3_1:-72319829 | Msa0373290:three_prime_UTR |
| AAATTGTAGGATCCTGAAAA+TGG | 0.394779 | 3_1:-72322017 | Msa0373290:intron |
| GCATTACACTCTTTGGTGCT+TGG | 0.415611 | 3_1:-72322220 | Msa0373290:CDS |
| CTCTACTTCTTCAAAAGAAA+AGG | 0.419549 | 3_1:-72321142 | Msa0373290:intron |
| AGGTATTGCATACTGTTGTT+TGG | 0.432035 | 3_1:-72319851 | Msa0373290:three_prime_UTR |
| GGATCTCCATGTGTAGTTCT+GGG | 0.432237 | 3_1:+72321202 | None:intergenic |
| TGTCGTCATGTCAAAATCCT+AGG | 0.435595 | 3_1:-72322438 | Msa0373290:CDS |
| TACCTTAAGAGCAACTTTCA+AGG | 0.440828 | 3_1:+72321980 | None:intergenic |
| GGTTAAGTAATTAACTCGGT+TGG | 0.440887 | 3_1:-72319830 | Msa0373290:three_prime_UTR |
| CCCTTTGCATCATTGAGATC+AGG | 0.441257 | 3_1:+72322165 | None:intergenic |
| CAAAGAGTGTAATGCTTAGT+TGG | 0.443652 | 3_1:+72322228 | None:intergenic |
| GGGAATGCCCTTACGTCTTG+TGG | 0.446978 | 3_1:-72322198 | Msa0373290:CDS |
| ATTGGTCAGATGGGTGTTGG+AGG | 0.453286 | 3_1:-72321168 | Msa0373290:CDS |
| GGGATTGGTCAGATGGGTGT+TGG | 0.463649 | 3_1:-72321171 | Msa0373290:CDS |
| TGATGGTGGAATGTGAGATT+TGG | 0.471722 | 3_1:+72320001 | None:intergenic |
| AGATGCACGTGCTAAGTTAG+AGG | 0.481970 | 3_1:-72322268 | Msa0373290:CDS |
| GGCTTTCTGGAAATACTCAT+AGG | 0.488748 | 3_1:+72322128 | None:intergenic |
| TTTGTTTAACTAGGAGGTGA+TGG | 0.492447 | 3_1:+72319984 | None:intergenic |
| GGATGGGCTATTCTTGCAGC+AGG | 0.494623 | 3_1:-72320047 | Msa0373290:CDS |
| TCTCCGAGGCTTAGTGCTAT+AGG | 0.494967 | 3_1:+72319793 | None:intergenic |
| TACATATGACTTGCTTGGAT+GGG | 0.500290 | 3_1:-72320063 | Msa0373290:CDS |
| TCCTGATCTCAATGATGCAA+AGG | 0.503029 | 3_1:-72322166 | Msa0373290:CDS |
| ACGAAATTTGTTTAACTAGG+AGG | 0.515471 | 3_1:+72319978 | None:intergenic |
| ATGACGAAATTTGTTTAACT+AGG | 0.517588 | 3_1:+72319975 | None:intergenic |
| TTAGAAATCCACAAGACGTA+AGG | 0.523225 | 3_1:+72322190 | None:intergenic |
| TATCAAAGCTTCTCCCCACT+TGG | 0.532053 | 3_1:+72322465 | None:intergenic |
| CCTGATCTCAATGATGCAAA+GGG | 0.533792 | 3_1:-72322165 | Msa0373290:CDS |
| TTAAGTAATTAACTCGGTTG+GGG | 0.534432 | 3_1:-72319828 | Msa0373290:three_prime_UTR |
| TTACATATGACTTGCTTGGA+TGG | 0.537551 | 3_1:-72320064 | Msa0373290:CDS |
| ATTACACTCTTTGGTGCTTG+GGG | 0.538997 | 3_1:-72322218 | Msa0373290:CDS |
| TTGCAGCAGGTATAGTAGCA+TGG | 0.555539 | 3_1:-72320034 | Msa0373290:CDS |
| TTGGTCAGATGGGTGTTGGA+GGG | 0.555646 | 3_1:-72321167 | Msa0373290:CDS |
| GAGTTTACATATGACTTGCT+TGG | 0.556692 | 3_1:-72320068 | Msa0373290:CDS |
| GAGTTTACAGAAGAGGACTT+TGG | 0.558515 | 3_1:-72323166 | Msa0373290:CDS |
| TATACAGAATTTGACCAAGT+GGG | 0.558546 | 3_1:-72322479 | Msa0373290:intron |
| TGCAGCAGGTATAGTAGCAT+GGG | 0.559855 | 3_1:-72320033 | Msa0373290:CDS |
| TTTCCAGAAAGCCGTGGACG+TGG | 0.560267 | 3_1:-72322118 | Msa0373290:intron |
| GATTCCAAGAAGATGATTGA+AGG | 0.565529 | 3_1:-72322415 | Msa0373290:intron |
| ATCATCTTCTTGGAATCCCT+AGG | 0.572172 | 3_1:+72322421 | None:intergenic |
| AGTAATTAACTCGGTTGGGG+CGG | 0.578334 | 3_1:-72319825 | Msa0373290:three_prime_UTR |
| GTCGTCATGTCAAAATCCTA+GGG | 0.579581 | 3_1:-72322437 | Msa0373290:CDS |
| TTACAGAAGAGGACTTTGGT+AGG | 0.589326 | 3_1:-72323162 | Msa0373290:CDS |
| ATACAGAATTTGACCAAGTG+GGG | 0.589820 | 3_1:-72322478 | Msa0373290:intron |
| GTTTAACTAGGAGGTGATGG+TGG | 0.591003 | 3_1:+72319987 | None:intergenic |
| TATAGTAGCATGGGTAGCAA+TGG | 0.598058 | 3_1:-72320024 | Msa0373290:CDS |
| GATCTCCATGTGTAGTTCTG+GGG | 0.602901 | 3_1:+72321203 | None:intergenic |
| GAATATGGAGTTTACAGAAG+AGG | 0.610061 | 3_1:-72323173 | Msa0373290:exon |
| ATCGTAATTGAATCACATCT+AGG | 0.610972 | 3_1:+72319746 | None:intergenic |
| GTTTGGTTAAGTAATTAACT+CGG | 0.618407 | 3_1:-72319834 | Msa0373290:three_prime_UTR |
| TAGAAATCCACAAGACGTAA+GGG | 0.618493 | 3_1:+72322191 | None:intergenic |
| ATACGTACATCAGCGTCAAG+AGG | 0.633313 | 3_1:+72323085 | None:intergenic |
| CAAATACATTACCACGTCCA+CGG | 0.637087 | 3_1:+72322107 | None:intergenic |
| ACTCCTATAGCACTAAGCCT+CGG | 0.638988 | 3_1:-72319796 | Msa0373290:three_prime_UTR |
| GAACAATCGCAAAACAGCTG+AGG | 0.642911 | 3_1:-72323125 | Msa0373290:CDS |
| GCTTAGTGCTATAGGAGTAG+CGG | 0.646788 | 3_1:+72319801 | None:intergenic |
| TGAGTATTTCCAGAAAGCCG+TGG | 0.652801 | 3_1:-72322124 | Msa0373290:CDS |
| TGCACGTGCTAAGTTAGAGG+AGG | 0.659206 | 3_1:-72322265 | Msa0373290:CDS |
| TTATACAGAATTTGACCAAG+TGG | 0.672936 | 3_1:-72322480 | Msa0373290:intron |
| ATAGGCCCCAGAACTACACA+TGG | 0.676465 | 3_1:-72321208 | Msa0373290:intron |
| TATAGCACTAAGCCTCGGAG+AGG | 0.744571 | 3_1:-72319791 | Msa0373290:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGTTAAAAAATGAATTTA+AGG | + | chr3_1:72320257-72320276 | None:intergenic | 10.0% |
| !!! | TTTTTTAACTAAATTCAATT+CGG | - | chr3_1:72320265-72320284 | Msa0373290:intron | 10.0% |
| !! | GTAAAACTAAATAAATTATT+AGG | - | chr3_1:72321313-72321332 | Msa0373290:intron | 10.0% |
| !! | AAGGTAAAATAATTTATGTT+TGG | + | chr3_1:72320238-72320257 | None:intergenic | 15.0% |
| !! | ATAAATCATTCTACTTAAAT+AGG | + | chr3_1:72320368-72320387 | None:intergenic | 15.0% |
| !! | ATGATTTATGCATAAATAAT+AGG | + | chr3_1:72322028-72322047 | None:intergenic | 15.0% |
| !!! | TTTTGATAATAACACATAAA+AGG | + | chr3_1:72323001-72323020 | None:intergenic | 15.0% |
| !!! | ATTAAAAGCATATTTACCAA+CGG | + | chr3_1:72320060-72320079 | None:intergenic | 20.0% |
| !! | TTCTTGAAGTTTATTAATTG+CGG | - | chr3_1:72320903-72320922 | Msa0373290:intron | 20.0% |
| !! | GAAAAGTTTAAGTGATATTA+AGG | - | chr3_1:72321418-72321437 | Msa0373290:intron | 20.0% |
| !! | CTTATAAAGCATGTTAATAA+TGG | + | chr3_1:72321550-72321569 | None:intergenic | 20.0% |
| !! | CAATATTTATAGAAAGTTCA+AGG | + | chr3_1:72321660-72321679 | None:intergenic | 20.0% |
| !!! | TGAGTTTTAGCATTTTAAAA+TGG | + | chr3_1:72321938-72321957 | None:intergenic | 20.0% |
| !! | TTAAAATGCTAAAACTCAAA+TGG | - | chr3_1:72321940-72321959 | Msa0373290:intron | 20.0% |
| !! | TTATTTATGCATAAATCATG+CGG | - | chr3_1:72322029-72322048 | Msa0373290:intron | 20.0% |
| !! | GTGCTAATATTTAATCTAAT+GGG | - | chr3_1:72322146-72322165 | Msa0373290:CDS | 20.0% |
| !! | TAATATTTAATCTAATGGGA+AGG | - | chr3_1:72322150-72322169 | Msa0373290:CDS | 20.0% |
| ! | GATCGTAACAAAAAAACAAA+AGG | + | chr3_1:72319745-72319764 | None:intergenic | 25.0% |
| !!! | AGGTTTATTCTAAAACTACA+AGG | + | chr3_1:72320085-72320104 | None:intergenic | 25.0% |
| ! | ATCAAATTCTAATAAACCTG+AGG | + | chr3_1:72320105-72320124 | None:intergenic | 25.0% |
| !!! | AAAGTTATTTTCTCTTGTGA+AGG | - | chr3_1:72320591-72320610 | Msa0373290:intron | 25.0% |
| !!! | TTGATTATTGTGTGTTTTGA+TGG | - | chr3_1:72320634-72320653 | Msa0373290:intron | 25.0% |
| !!! | TGATTATTGTGTGTTTTGAT+GGG | - | chr3_1:72320635-72320654 | Msa0373290:intron | 25.0% |
| ! | CAGATACAATTTCAAAACAA+TGG | + | chr3_1:72321015-72321034 | None:intergenic | 25.0% |
| ! | AGAAGATGAATTAAACTTGT+TGG | + | chr3_1:72321204-72321223 | None:intergenic | 25.0% |
| ! | TTCATCTTCTATTTACTACA+TGG | - | chr3_1:72321214-72321233 | Msa0373290:intron | 25.0% |
| ! | GTTTGTTCTATAAATCACAA+CGG | - | chr3_1:72321338-72321357 | Msa0373290:intron | 25.0% |
| !! | ACATGCTTTATAAGTTTTTC+TGG | - | chr3_1:72321556-72321575 | Msa0373290:intron | 25.0% |
| !!! | TTTATAAGTTTTTCTGGTCA+AGG | - | chr3_1:72321562-72321581 | Msa0373290:intron | 25.0% |
| !!! | TTTTCTTTTGAAGAAGTAGA+GGG | + | chr3_1:72321808-72321827 | None:intergenic | 25.0% |
| ! | CGTGCTAATATTTAATCTAA+TGG | - | chr3_1:72322145-72322164 | Msa0373290:CDS | 25.0% |
| !! | TTCAAAGTACTATCACAATT+TGG | - | chr3_1:72322374-72322393 | Msa0373290:intron | 25.0% |
| ! | ACAGAAGGAGAATAATTATT+AGG | + | chr3_1:72322508-72322527 | None:intergenic | 25.0% |
| ! | CATGAAATCTAAAAAACAGA+AGG | + | chr3_1:72322523-72322542 | None:intergenic | 25.0% |
| !!! | TGTTTTTTAGATTTCATGTG+CGG | - | chr3_1:72322525-72322544 | Msa0373290:intron | 25.0% |
| ! | CAAAAAAATTTAAGTCTGCT+AGG | + | chr3_1:72322679-72322698 | None:intergenic | 25.0% |
| ! | TCATTATAGATAGAGATGAT+TGG | + | chr3_1:72322760-72322779 | None:intergenic | 25.0% |
| !! | ATGACGAAATTTGTTTAACT+AGG | + | chr3_1:72322977-72322996 | None:intergenic | 25.0% |
| ! | AAAGACTATTCAGTTTAGAT+TGG | - | chr3_1:72323029-72323048 | Msa0373290:intron | 25.0% |
| !!! | GATTGGATGTTTTGTTTTTT+TGG | - | chr3_1:72323046-72323065 | Msa0373290:intron | 25.0% |
| ! | TTTGGAGAATAACTTTAGAT+TGG | - | chr3_1:72323064-72323083 | Msa0373290:intron | 25.0% |
| ! | TTAGATTGGAATTGAGAATT+AGG | - | chr3_1:72323078-72323097 | Msa0373290:intron | 25.0% |
| ! | GTTTGGTTAAGTAATTAACT+CGG | - | chr3_1:72323115-72323134 | Msa0373290:CDS | 25.0% |
| GATCACAGAAGAATTGAATA+TGG | - | chr3_1:72319761-72319780 | Msa0373290:three_prime_UTR | 30.0% | |
| AAAAGAAATCCTCACGAATT+CGG | + | chr3_1:72319954-72319973 | None:intergenic | 30.0% | |
| GTCTTTGTCTCATTACAATA+CGG | - | chr3_1:72320026-72320045 | Msa0373290:CDS | 30.0% | |
| !!! | GTAGTTTTAGAATAAACCTC+AGG | - | chr3_1:72320086-72320105 | Msa0373290:CDS | 30.0% |
| ACTAAATTCAATTCGGTAGT+TGG | - | chr3_1:72320272-72320291 | Msa0373290:intron | 30.0% | |
| AGCCATAAAAAAAGTCGTTT+AGG | - | chr3_1:72320338-72320357 | Msa0373290:intron | 30.0% | |
| !!! | GACCTAAACGACTTTTTTTA+TGG | + | chr3_1:72320343-72320362 | None:intergenic | 30.0% |
| !! | ATGCGTTTTGTTCAGTTTTA+TGG | + | chr3_1:72320416-72320435 | None:intergenic | 30.0% |
| TTATACAGAATTTGACCAAG+TGG | - | chr3_1:72320469-72320488 | Msa0373290:intron | 30.0% | |
| TATACAGAATTTGACCAAGT+GGG | - | chr3_1:72320470-72320489 | Msa0373290:intron | 30.0% | |
| TATACCTTCAATCATCTTCT+TGG | + | chr3_1:72320541-72320560 | None:intergenic | 30.0% | |
| AAATTGTAGGATCCTGAAAA+TGG | - | chr3_1:72320932-72320951 | Msa0373290:intron | 30.0% | |
| !!! | AATTGGAAGTGTTAACCTTT+TGG | - | chr3_1:72321124-72321143 | Msa0373290:intron | 30.0% |
| TTTACTACATGGTTTATCTG+AGG | - | chr3_1:72321225-72321244 | Msa0373290:intron | 30.0% | |
| !! | TGGTTTATCTGAGGTTTTAA+TGG | - | chr3_1:72321234-72321253 | Msa0373290:intron | 30.0% |
| ! | GGAATTGATTTAGTTCACAA+AGG | - | chr3_1:72321500-72321519 | Msa0373290:intron | 30.0% |
| ! | TTGATTTAGTTCACAAAGGT+TGG | - | chr3_1:72321504-72321523 | Msa0373290:intron | 30.0% |
| !! | CTTTTCTTTTGAAGAAGTAG+AGG | + | chr3_1:72321809-72321828 | None:intergenic | 30.0% |
| CTCTACTTCTTCAAAAGAAA+AGG | - | chr3_1:72321807-72321826 | Msa0373290:intron | 30.0% | |
| ACTTCTTCAAAAGAAAAGGT+TGG | - | chr3_1:72321811-72321830 | Msa0373290:intron | 30.0% | |
| TCACAAATACTAACTGTAAC+TGG | - | chr3_1:72321877-72321896 | Msa0373290:intron | 30.0% | |
| !!! | TTGGCACTTCTTTTTTATCT+TGG | - | chr3_1:72322077-72322096 | Msa0373290:intron | 30.0% |
| AATTAGACAACATGTTCTAG+AGG | - | chr3_1:72322250-72322269 | Msa0373290:CDS | 30.0% | |
| ! | ATTAGACAACATGTTCTAGA+GGG | - | chr3_1:72322251-72322270 | Msa0373290:CDS | 30.0% |
| TTGGACCTGCATATAATTTA+CGG | + | chr3_1:72322348-72322367 | None:intergenic | 30.0% | |
| TATGATACTGCAGTTAGAAT+TGG | - | chr3_1:72322414-72322433 | Msa0373290:intron | 30.0% | |
| ATGATACTGCAGTTAGAATT+GGG | - | chr3_1:72322415-72322434 | Msa0373290:intron | 30.0% | |
| AGAAGAGTAGTATAGTTCAA+AGG | + | chr3_1:72322610-72322629 | None:intergenic | 30.0% | |
| TCAAACAATTTAAGTCTGCT+AGG | + | chr3_1:72322708-72322727 | None:intergenic | 30.0% | |
| TATCTGTTAACAGCATTGTT+TGG | - | chr3_1:72322824-72322843 | Msa0373290:intron | 30.0% | |
| ! | ACGAAATTTGTTTAACTAGG+AGG | + | chr3_1:72322974-72322993 | None:intergenic | 30.0% |
| GTTAAGTAATTAACTCGGTT+GGG | - | chr3_1:72323120-72323139 | Msa0373290:CDS | 30.0% | |
| TTAAGTAATTAACTCGGTTG+GGG | - | chr3_1:72323121-72323140 | Msa0373290:CDS | 30.0% | |
| ATCGTAATTGAATCACATCT+AGG | + | chr3_1:72323206-72323225 | None:intergenic | 30.0% | |
| GAATATGGAGTTTACAGAAG+AGG | - | chr3_1:72319776-72319795 | Msa0373290:three_prime_UTR | 35.0% | |
| !! | ATGTTATTTCCGAATTCGTG+AGG | - | chr3_1:72319942-72319961 | Msa0373290:three_prime_UTR | 35.0% |
| ATACAGAATTTGACCAAGTG+GGG | - | chr3_1:72320471-72320490 | Msa0373290:intron | 35.0% | |
| GATTCCAAGAAGATGATTGA+AGG | - | chr3_1:72320534-72320553 | Msa0373290:intron | 35.0% | |
| ! | CAAAGAGTGTAATGCTTAGT+TGG | + | chr3_1:72320724-72320743 | None:intergenic | 35.0% |
| CAACTAAGCATTACACTCTT+TGG | - | chr3_1:72320722-72320741 | Msa0373290:intron | 35.0% | |
| TAGAAATCCACAAGACGTAA+GGG | + | chr3_1:72320761-72320780 | None:intergenic | 35.0% | |
| TTAGAAATCCACAAGACGTA+AGG | + | chr3_1:72320762-72320781 | None:intergenic | 35.0% | |
| !! | ATTGCGGATTCTGAAATTGT+AGG | - | chr3_1:72320919-72320938 | Msa0373290:intron | 35.0% |
| TACCTTAAGAGCAACTTTCA+AGG | + | chr3_1:72320972-72320991 | None:intergenic | 35.0% | |
| TAAAACTACCTTGTCTACTC+TGG | - | chr3_1:72321090-72321109 | Msa0373290:intron | 35.0% | |
| !!! | CTCTGGTTTTTAGCTGAAAT+TGG | - | chr3_1:72321107-72321126 | Msa0373290:intron | 35.0% |
| TAAATAAAACCCGCAGTATC+TGG | + | chr3_1:72321373-72321392 | None:intergenic | 35.0% | |
| !!! | GATACTGCGGGTTTTATTTA+TGG | - | chr3_1:72321373-72321392 | Msa0373290:intron | 35.0% |
| !! | TCACAAAGGTTGGTGAAAAT+TGG | - | chr3_1:72321514-72321533 | Msa0373290:intron | 35.0% |
| GTTTGTAAACCATGTCTCAT+AGG | - | chr3_1:72321723-72321742 | Msa0373290:intron | 35.0% | |
| ACATGGAGATCCACAAAAAT+GGG | - | chr3_1:72321758-72321777 | Msa0373290:intron | 35.0% | |
| !! | AAAAATGGGATTGGTCAGAT+GGG | - | chr3_1:72321772-72321791 | Msa0373290:intron | 35.0% |
| TCTTGTTCTGTGGATGTAAA+TGG | - | chr3_1:72321966-72321985 | Msa0373290:intron | 35.0% | |
| TGTAAATGGTTGTTGCCATT+AGG | - | chr3_1:72321980-72321999 | Msa0373290:intron | 35.0% | |
| AAATGCTATTCCAAATGGGA+AGG | + | chr3_1:72322059-72322078 | None:intergenic | 35.0% | |
| ! | TTCCCATTTGGAATAGCATT+TGG | - | chr3_1:72322058-72322077 | Msa0373290:intron | 35.0% |
| TGCCAAATGCTATTCCAAAT+GGG | + | chr3_1:72322063-72322082 | None:intergenic | 35.0% | |
| TAGAGGGATAAAATGATGCT+AGG | - | chr3_1:72322267-72322286 | Msa0373290:CDS | 35.0% | |
| ATAGTACTTTGAACGACACT+TGG | + | chr3_1:72322367-72322386 | None:intergenic | 35.0% | |
| TGGGTTTGTATTTGCAAACA+AGG | - | chr3_1:72322434-72322453 | Msa0373290:CDS | 35.0% | |
| GGGTTTGTATTTGCAAACAA+GGG | - | chr3_1:72322435-72322454 | Msa0373290:CDS | 35.0% | |
| TCTTATCGATCAACGTTGTA+TGG | - | chr3_1:72322458-72322477 | Msa0373290:CDS | 35.0% | |
| ! | CATGTCATGTTTTCGGATAT+TGG | - | chr3_1:72322637-72322656 | Msa0373290:intron | 35.0% |
| ! | AGCATTGTTTGGTTCATTTC+AGG | - | chr3_1:72322835-72322854 | Msa0373290:intron | 35.0% |
| !! | GAGTTTACATATGACTTGCT+TGG | - | chr3_1:72322881-72322900 | Msa0373290:intron | 35.0% |
| !! | TTACATATGACTTGCTTGGA+TGG | - | chr3_1:72322885-72322904 | Msa0373290:intron | 35.0% |
| !! | TACATATGACTTGCTTGGAT+GGG | - | chr3_1:72322886-72322905 | Msa0373290:intron | 35.0% |
| TTTGTTTAACTAGGAGGTGA+TGG | + | chr3_1:72322968-72322987 | None:intergenic | 35.0% | |
| ! | AGGTATTGCATACTGTTGTT+TGG | - | chr3_1:72323098-72323117 | Msa0373290:CDS | 35.0% |
| GGTTAAGTAATTAACTCGGT+TGG | - | chr3_1:72323119-72323138 | Msa0373290:CDS | 35.0% | |
| GAGTTTACAGAAGAGGACTT+TGG | - | chr3_1:72319783-72319802 | Msa0373290:three_prime_UTR | 40.0% | |
| TTACAGAAGAGGACTTTGGT+AGG | - | chr3_1:72319787-72319806 | Msa0373290:three_prime_UTR | 40.0% | |
| !! | AGCTGTTTTGCGATTGTTCT+CGG | + | chr3_1:72319823-72319842 | None:intergenic | 40.0% |
| CAATACGGAAATTTCACCGT+TGG | - | chr3_1:72320041-72320060 | Msa0373290:CDS | 40.0% | |
| !!! | ACGACTTTTTTTATGGCTCG+TGG | + | chr3_1:72320336-72320355 | None:intergenic | 40.0% |
| TGTCGTCATGTCAAAATCCT+AGG | - | chr3_1:72320511-72320530 | Msa0373290:intron | 40.0% | |
| GTCGTCATGTCAAAATCCTA+GGG | - | chr3_1:72320512-72320531 | Msa0373290:intron | 40.0% | |
| ATCATCTTCTTGGAATCCCT+AGG | + | chr3_1:72320531-72320550 | None:intergenic | 40.0% | |
| !! | CATTACACTCTTTGGTGCTT+GGG | - | chr3_1:72320730-72320749 | Msa0373290:intron | 40.0% |
| !! | ATTACACTCTTTGGTGCTTG+GGG | - | chr3_1:72320731-72320750 | Msa0373290:intron | 40.0% |
| TCCTGATCTCAATGATGCAA+AGG | - | chr3_1:72320783-72320802 | Msa0373290:intron | 40.0% | |
| CCTGATCTCAATGATGCAAA+GGG | - | chr3_1:72320784-72320803 | Msa0373290:intron | 40.0% | |
| !! | TGCAAAGGGTCATTTTGACA+AGG | - | chr3_1:72320798-72320817 | Msa0373290:intron | 40.0% |
| ! | GGCTTTCTGGAAATACTCAT+AGG | + | chr3_1:72320824-72320843 | None:intergenic | 40.0% |
| CAAATACATTACCACGTCCA+CGG | + | chr3_1:72320845-72320864 | None:intergenic | 40.0% | |
| ! | TGTCTGTAGAGACCATTTTC+AGG | + | chr3_1:72320947-72320966 | None:intergenic | 40.0% |
| GTCCTTGAAAGTTGCTCTTA+AGG | - | chr3_1:72320967-72320986 | Msa0373290:intron | 40.0% | |
| GCTAAAAACCAGAGTAGACA+AGG | + | chr3_1:72321101-72321120 | None:intergenic | 40.0% | |
| CTGTGACTCTATCAACCAAA+AGG | + | chr3_1:72321142-72321161 | None:intergenic | 40.0% | |
| TGGCAGTAGAGAACTACTTT+AGG | + | chr3_1:72321184-72321203 | None:intergenic | 40.0% | |
| ATTCCAGCAATGCATGATGA+TGG | + | chr3_1:72321485-72321504 | None:intergenic | 40.0% | |
| CACATGGAGATCCACAAAAA+TGG | - | chr3_1:72321757-72321776 | Msa0373290:intron | 40.0% | |
| GAGATCCACAAAAATGGGAT+TGG | - | chr3_1:72321763-72321782 | Msa0373290:intron | 40.0% | |
| !! | TCTGACCAATCCCATTTTTG+TGG | + | chr3_1:72321771-72321790 | None:intergenic | 40.0% |
| !! | CAAAAATGGGATTGGTCAGA+TGG | - | chr3_1:72321771-72321790 | Msa0373290:intron | 40.0% |
| GGTCATGTCAGTCAAGTATA+AGG | - | chr3_1:72321898-72321917 | Msa0373290:intron | 40.0% | |
| GTCAGTCAAGTATAAGGACA+TGG | - | chr3_1:72321904-72321923 | Msa0373290:intron | 40.0% | |
| CAAATGGAGTTCTTGTTCTG+TGG | - | chr3_1:72321956-72321975 | Msa0373290:intron | 40.0% | |
| TTGCCATTAGGCCTCAAATT+TGG | - | chr3_1:72321992-72322011 | Msa0373290:CDS | 40.0% | |
| ! | CATCCAAATTTGAGGCCTAA+TGG | + | chr3_1:72321998-72322017 | None:intergenic | 40.0% |
| GCCTCAAATTTGGATGTACA+AGG | - | chr3_1:72322002-72322021 | Msa0373290:CDS | 40.0% | |
| GCCTTGTACATCCAAATTTG+AGG | + | chr3_1:72322006-72322025 | None:intergenic | 40.0% | |
| GTGCCAAATGCTATTCCAAA+TGG | + | chr3_1:72322064-72322083 | None:intergenic | 40.0% | |
| GTGTGCCGTAAATTATATGC+AGG | - | chr3_1:72322340-72322359 | Msa0373290:intron | 40.0% | |
| ! | ACTCCAGCATGTCATGTTTT+CGG | - | chr3_1:72322630-72322649 | Msa0373290:intron | 40.0% |
| TATCCGAAAACATGACATGC+TGG | + | chr3_1:72322636-72322655 | None:intergenic | 40.0% | |
| TATAGTAGCATGGGTAGCAA+TGG | - | chr3_1:72322925-72322944 | Msa0373290:intron | 40.0% | |
| !! | TGATGGTGGAATGTGAGATT+TGG | + | chr3_1:72322951-72322970 | None:intergenic | 40.0% |
| GAACAATCGCAAAACAGCTG+AGG | - | chr3_1:72319824-72319843 | Msa0373290:three_prime_UTR | 45.0% | |
| ATACGTACATCAGCGTCAAG+AGG | + | chr3_1:72319867-72319886 | None:intergenic | 45.0% | |
| TATCAAAGCTTCTCCCCACT+TGG | + | chr3_1:72320487-72320506 | None:intergenic | 45.0% | |
| ! | CACGTGCATCTGGAATTAGT+TGG | + | chr3_1:72320672-72320691 | None:intergenic | 45.0% |
| TCTAACTTAGCACGTGCATC+TGG | + | chr3_1:72320682-72320701 | None:intergenic | 45.0% | |
| AGATGCACGTGCTAAGTTAG+AGG | - | chr3_1:72320681-72320700 | Msa0373290:intron | 45.0% | |
| !! | GCATTACACTCTTTGGTGCT+TGG | - | chr3_1:72320729-72320748 | Msa0373290:intron | 45.0% |
| CCCTTTGCATCATTGAGATC+AGG | + | chr3_1:72320787-72320806 | None:intergenic | 45.0% | |
| TGAGTATTTCCAGAAAGCCG+TGG | - | chr3_1:72320825-72320844 | Msa0373290:intron | 45.0% | |
| AAACCCGCAGTATCTGGTAT+AGG | + | chr3_1:72321367-72321386 | None:intergenic | 45.0% | |
| TGGCTAATGTGCTACACTGT+AGG | - | chr3_1:72321393-72321412 | Msa0373290:intron | 45.0% | |
| GGCTAATGTGCTACACTGTA+GGG | - | chr3_1:72321394-72321413 | Msa0373290:intron | 45.0% | |
| TTGCCATCATCATGCATTGC+TGG | - | chr3_1:72321479-72321498 | Msa0373290:intron | 45.0% | |
| ! | GATCTCCATGTGTAGTTCTG+GGG | + | chr3_1:72321749-72321768 | None:intergenic | 45.0% |
| GGATCTCCATGTGTAGTTCT+GGG | + | chr3_1:72321750-72321769 | None:intergenic | 45.0% | |
| TGGATCTCCATGTGTAGTTC+TGG | + | chr3_1:72321751-72321770 | None:intergenic | 45.0% | |
| ! | TTCTAAGAGACACGCTCTTC+AGG | - | chr3_1:72322120-72322139 | Msa0373290:CDS | 45.0% |
| CAGTATCATACGCAGCTAGA+TGG | + | chr3_1:72322404-72322423 | None:intergenic | 45.0% | |
| TTGCAGCAGGTATAGTAGCA+TGG | - | chr3_1:72322915-72322934 | Msa0373290:intron | 45.0% | |
| TGCAGCAGGTATAGTAGCAT+GGG | - | chr3_1:72322916-72322935 | Msa0373290:intron | 45.0% | |
| ! | GTTTAACTAGGAGGTGATGG+TGG | + | chr3_1:72322965-72322984 | None:intergenic | 45.0% |
| AGTAATTAACTCGGTTGGGG+CGG | - | chr3_1:72323124-72323143 | Msa0373290:CDS | 45.0% | |
| GCTTAGTGCTATAGGAGTAG+CGG | + | chr3_1:72323151-72323170 | None:intergenic | 45.0% | |
| ACTCCTATAGCACTAAGCCT+CGG | - | chr3_1:72323153-72323172 | Msa0373290:CDS | 45.0% | |
| ! | ATAGACCATTTTCCTCTCCG+AGG | + | chr3_1:72323173-72323192 | None:intergenic | 45.0% |
| !! | TAAAAGAAATATAAATAATT+AGG | + | chr3_1:72319912-72319931 | None:intergenic | 5.0% |
| TGGATCCATGCTTCACTAGC+TGG | - | chr3_1:72320292-72320311 | Msa0373290:intron | 50.0% | |
| TGCACGTGCTAAGTTAGAGG+AGG | - | chr3_1:72320684-72320703 | Msa0373290:intron | 50.0% | |
| GCCACCTATACCAGATACTG+CGG | - | chr3_1:72321360-72321379 | Msa0373290:intron | 50.0% | |
| CCACCTATACCAGATACTGC+GGG | - | chr3_1:72321361-72321380 | Msa0373290:intron | 50.0% | |
| ATAGGCCCCAGAACTACACA+TGG | - | chr3_1:72321741-72321760 | Msa0373290:intron | 50.0% | |
| !! | ATTGGTCAGATGGGTGTTGG+AGG | - | chr3_1:72321781-72321800 | Msa0373290:intron | 50.0% |
| !! | TTGGTCAGATGGGTGTTGGA+GGG | - | chr3_1:72321782-72321801 | Msa0373290:intron | 50.0% |
| ! | ATGCGGATTGCCTTCCCATT+TGG | - | chr3_1:72322046-72322065 | Msa0373290:intron | 50.0% |
| GCACACAAACAGACACAACG+CGG | + | chr3_1:72322326-72322345 | None:intergenic | 50.0% | |
| TCTCCGAGGCTTAGTGCTAT+AGG | + | chr3_1:72323159-72323178 | None:intergenic | 50.0% | |
| TATAGCACTAAGCCTCGGAG+AGG | - | chr3_1:72323158-72323177 | Msa0373290:CDS | 50.0% | |
| CTAAGCCTCGGAGAGGAAAA+TGG | - | chr3_1:72323165-72323184 | Msa0373290:CDS | 50.0% | |
| GGGAATGCCCTTACGTCTTG+TGG | - | chr3_1:72320751-72320770 | Msa0373290:intron | 55.0% | |
| TTTCCAGAAAGCCGTGGACG+TGG | - | chr3_1:72320831-72320850 | Msa0373290:intron | 55.0% | |
| TTACCACGTCCACGGCTTTC+TGG | + | chr3_1:72320837-72320856 | None:intergenic | 55.0% | |
| CCCGCAGTATCTGGTATAGG+TGG | + | chr3_1:72321364-72321383 | None:intergenic | 55.0% | |
| !! | GTTCTGGGGCCTATGAGACA+TGG | + | chr3_1:72321735-72321754 | None:intergenic | 55.0% |
| !! | GGGATTGGTCAGATGGGTGT+TGG | - | chr3_1:72321778-72321797 | Msa0373290:intron | 55.0% |
| !! | GGATGGGCTATTCTTGCAGC+AGG | - | chr3_1:72322902-72322921 | Msa0373290:intron | 55.0% |
| CGACGCCAGCTAGTGAAGCA+TGG | + | chr3_1:72320300-72320319 | None:intergenic | 60.0% | |
| TGCTTCACTAGCTGGCGTCG+CGG | - | chr3_1:72320300-72320319 | Msa0373290:intron | 60.0% | |
| GCTTCACTAGCTGGCGTCGC+GGG | - | chr3_1:72320301-72320320 | Msa0373290:intron | 65.0% | |
| CACTAGCTGGCGTCGCGGGA+TGG | - | chr3_1:72320305-72320324 | Msa0373290:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 72319735 | 72323236 | 72319735 | ID=Msa0373290;Name=Msa0373290 |
| chr3_1 | mRNA | 72319735 | 72323236 | 72319735 | ID=Msa0373290-mRNA-1;Parent=Msa0373290;Name=Msa0373290-mRNA-1;_AED=0.26;_eAED=0.26;_QI=45|1|1|1|1|1|6|254|201 |
| chr3_1 | exon | 72319735 | 72320114 | 72319735 | ID=Msa0373290-mRNA-1:exon:16125;Parent=Msa0373290-mRNA-1 |
| chr3_1 | exon | 72321143 | 72321226 | 72321143 | ID=Msa0373290-mRNA-1:exon:16124;Parent=Msa0373290-mRNA-1 |
| chr3_1 | exon | 72321983 | 72322030 | 72321983 | ID=Msa0373290-mRNA-1:exon:16123;Parent=Msa0373290-mRNA-1 |
| chr3_1 | exon | 72322119 | 72322288 | 72322119 | ID=Msa0373290-mRNA-1:exon:16122;Parent=Msa0373290-mRNA-1 |
| chr3_1 | exon | 72322416 | 72322494 | 72322416 | ID=Msa0373290-mRNA-1:exon:16121;Parent=Msa0373290-mRNA-1 |
| chr3_1 | exon | 72323093 | 72323236 | 72323093 | ID=Msa0373290-mRNA-1:exon:16120;Parent=Msa0373290-mRNA-1 |
| chr3_1 | five_prime_UTR | 72323192 | 72323236 | 72323192 | ID=Msa0373290-mRNA-1:five_prime_utr;Parent=Msa0373290-mRNA-1 |
| chr3_1 | CDS | 72323093 | 72323191 | 72323093 | ID=Msa0373290-mRNA-1:cds;Parent=Msa0373290-mRNA-1 |
| chr3_1 | CDS | 72322416 | 72322494 | 72322416 | ID=Msa0373290-mRNA-1:cds;Parent=Msa0373290-mRNA-1 |
| chr3_1 | CDS | 72322119 | 72322288 | 72322119 | ID=Msa0373290-mRNA-1:cds;Parent=Msa0373290-mRNA-1 |
| chr3_1 | CDS | 72321983 | 72322030 | 72321983 | ID=Msa0373290-mRNA-1:cds;Parent=Msa0373290-mRNA-1 |
| chr3_1 | CDS | 72321143 | 72321226 | 72321143 | ID=Msa0373290-mRNA-1:cds;Parent=Msa0373290-mRNA-1 |
| chr3_1 | CDS | 72319989 | 72320114 | 72319989 | ID=Msa0373290-mRNA-1:cds;Parent=Msa0373290-mRNA-1 |
| chr3_1 | three_prime_UTR | 72319735 | 72319988 | 72319735 | ID=Msa0373290-mRNA-1:three_prime_utr;Parent=Msa0373290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
