AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0377080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377080 MtrunA17_Chr3g0131911 93.361 241 16 0 1 241 1 241 5.49e-149 415
Msa0377080 MtrunA17_Chr8g0385991 68.932 206 51 3 1 206 1 193 3.23e-100 291
Msa0377080 MtrunA17_Chr7g0214071 62.011 179 56 5 1 178 1 168 3.80e-72 221
Msa0377080 MtrunA17_Chr7g0252971 49.405 168 76 3 12 172 6 171 1.04e-52 173
Msa0377080 MtrunA17_Chr2g0318101 50.289 173 74 4 14 176 15 185 1.44e-50 168
Msa0377080 MtrunA17_Chr3g0124761 47.568 185 83 5 13 195 6 178 1.55e-50 166
Msa0377080 MtrunA17_Chr4g0047841 47.222 180 74 3 13 173 14 191 3.18e-49 164
Msa0377080 MtrunA17_Chr8g0384721 49.390 164 74 3 10 171 3 159 3.21e-49 163
Msa0377080 MtrunA17_Chr4g0042561 50.307 163 73 4 12 172 7 163 5.67e-49 162
Msa0377080 MtrunA17_Chr5g0417791 50.625 160 71 4 14 171 3 156 3.05e-48 159
Msa0377080 MtrunA17_Chr2g0326361 49.708 171 73 5 14 182 14 173 3.89e-47 159
Msa0377080 MtrunA17_Chr7g0263931 47.500 160 78 3 13 170 10 165 4.63e-47 158
Msa0377080 MtrunA17_Chr8g0359921 48.171 164 73 4 14 174 14 168 4.07e-46 156
Msa0377080 MtrunA17_Chr2g0318081 48.148 162 72 3 14 173 16 167 9.42e-46 155
Msa0377080 MtrunA17_Chr3g0130731 46.951 164 77 3 10 171 3 158 1.27e-45 154
Msa0377080 MtrunA17_Chr2g0311651 38.785 214 105 4 6 193 13 226 2.82e-44 151
Msa0377080 MtrunA17_Chr5g0398971 46.471 170 72 5 9 171 2 159 3.04e-44 152
Msa0377080 MtrunA17_Chr4g0056541 43.931 173 80 4 9 176 2 162 7.59e-44 151
Msa0377080 MtrunA17_Chr4g0018391 46.429 168 73 5 9 171 2 157 1.27e-43 150
Msa0377080 MtrunA17_Chr5g0442771 46.875 160 79 3 16 170 20 178 2.26e-43 148
Msa0377080 MtrunA17_Chr8g0372121 45.455 165 73 3 14 173 6 158 2.48e-43 148
Msa0377080 MtrunA17_Chr8g0346001 44.186 172 82 4 9 171 10 176 1.28e-42 149
Msa0377080 MtrunA17_Chr5g0405211 46.988 166 71 4 14 174 8 161 1.82e-42 147
Msa0377080 MtrunA17_Chr3g0109821 47.531 162 70 4 14 170 6 157 4.44e-42 151
Msa0377080 MtrunA17_Chr2g0309331 43.529 170 80 5 10 174 6 164 6.27e-42 145
Msa0377080 MtrunA17_Chr5g0428991 44.970 169 79 3 11 175 22 180 6.31e-42 150
Msa0377080 MtrunA17_Chr2g0311661 38.389 211 109 4 16 205 23 233 7.54e-42 144
Msa0377080 MtrunA17_Chr5g0433781 45.342 161 74 3 14 170 6 156 8.19e-42 150
Msa0377080 MtrunA17_Chr6g0453131 41.808 177 95 3 2 173 3 176 1.11e-41 146
Msa0377080 MtrunA17_Chr1g0200561 44.444 171 78 4 14 179 19 177 1.87e-41 144
Msa0377080 MtrunA17_Chr5g0400461 42.938 177 84 5 10 178 2 169 2.47e-41 144
Msa0377080 MtrunA17_Chr8g0361731 40.437 183 102 3 1 178 1 181 2.56e-41 145
Msa0377080 MtrunA17_Chr5g0417001 39.378 193 102 4 16 195 16 206 6.30e-41 144
Msa0377080 MtrunA17_Chr4g0060931 44.025 159 79 4 14 170 17 167 7.18e-41 143
Msa0377080 MtrunA17_Chr3g0091921 43.827 162 81 4 14 173 16 169 8.88e-41 141
Msa0377080 MtrunA17_Chr6g0484441 42.500 160 76 4 14 170 5 151 9.94e-41 142
Msa0377080 MtrunA17_Chr6g0481091 39.196 199 98 6 14 199 6 194 1.72e-40 139
Msa0377080 MtrunA17_Chr3g0128151 44.118 170 81 3 11 176 19 178 1.77e-40 146
Msa0377080 MtrunA17_Chr3g0139331 43.210 162 80 3 14 173 11 162 2.07e-40 142
Msa0377080 MtrunA17_Chr3g0128111 42.683 164 80 3 17 176 45 198 1.02e-39 137
Msa0377080 MtrunA17_Chr4g0017921 44.172 163 73 4 14 171 8 157 1.45e-39 139
Msa0377080 MtrunA17_Chr1g0147421 38.806 201 97 6 14 202 27 213 2.29e-39 139
Msa0377080 MtrunA17_Chr6g0453451 42.945 163 77 4 13 170 19 170 5.71e-39 137
Msa0377080 MtrunA17_Chr2g0309891 42.857 161 79 3 14 170 6 157 1.08e-38 137
Msa0377080 MtrunA17_Chr3g0130101 41.317 167 84 3 16 178 9 165 2.95e-38 136
Msa0377080 MtrunA17_Chr4g0054791 44.172 163 80 4 12 170 4 159 3.17e-38 135
Msa0377080 MtrunA17_Chr7g0253011 39.665 179 97 5 14 186 17 190 4.10e-38 136
Msa0377080 MtrunA17_Chr1g0183741 42.683 164 80 4 12 173 8 159 5.28e-38 134
Msa0377080 MtrunA17_Chr2g0316971 41.615 161 86 4 12 170 21 175 5.30e-38 136
Msa0377080 MtrunA17_Chr4g0076731 43.293 164 78 4 16 177 56 206 3.45e-37 135
Msa0377080 MtrunA17_Chr7g0261411 44.025 159 75 5 12 168 8 154 4.71e-36 129
Msa0377080 MtrunA17_Chr8g0364791 38.728 173 92 3 10 178 2 164 5.94e-36 132
Msa0377080 MtrunA17_Chr6g0461661 40.606 165 88 5 14 176 18 174 9.49e-36 130
Msa0377080 MtrunA17_Chr2g0312321 41.463 164 81 6 12 172 9 160 1.32e-35 128
Msa0377080 MtrunA17_Chr8g0384201 38.728 173 92 3 10 178 2 164 2.20e-35 131
Msa0377080 MtrunA17_Chr4g0038751 44.755 143 74 3 1 141 4 143 3.06e-35 127
Msa0377080 MtrunA17_Chr1g0201021 41.916 167 83 4 16 178 21 177 5.09e-35 131
Msa0377080 MtrunA17_Chr1g0197361 41.520 171 78 7 16 178 10 166 1.25e-34 130
Msa0377080 MtrunA17_Chr1g0197351 42.604 169 89 2 14 178 42 206 3.16e-34 128
Msa0377080 MtrunA17_Chr3g0144271 46.617 133 66 3 14 143 23 153 1.41e-33 125
Msa0377080 MtrunA17_Chr7g0217721 36.517 178 94 4 7 171 12 183 1.51e-33 124
Msa0377080 MtrunA17_Chr8g0345691 40.491 163 78 5 11 168 9 157 1.63e-33 125
Msa0377080 MtrunA17_Chr8g0345671 42.138 159 73 6 14 167 11 155 6.14e-33 123
Msa0377080 MtrunA17_Chr3g0092671 40.351 171 80 6 16 178 7 163 1.47e-32 124
Msa0377080 MtrunA17_Chr7g0217711 39.726 146 82 2 7 150 12 153 2.67e-32 116
Msa0377080 MtrunA17_Chr4g0050701 35.185 162 95 3 14 174 11 163 1.23e-30 112
Msa0377080 MtrunA17_Chr4g0026141 39.759 166 81 6 14 169 5 161 3.43e-29 110
Msa0377080 MtrunA17_Chr2g0321631 38.650 163 86 4 15 169 5 161 2.45e-28 107
Msa0377080 MtrunA17_Chr7g0243371 52.688 93 37 2 49 141 6 91 1.40e-25 97.1
Msa0377080 MtrunA17_Chr7g0266701 34.320 169 95 6 14 172 4 166 3.03e-25 100
Msa0377080 MtrunA17_Chr8g0345721 34.545 165 71 4 17 147 38 199 3.05e-25 99.0
Msa0377080 MtrunA17_Chr8g0345741 41.322 121 63 4 25 140 2 119 2.40e-24 94.7
Msa0377080 MtrunA17_Chr3g0113001 46.296 108 51 2 64 171 17 117 3.79e-24 97.8
Msa0377080 MtrunA17_Chr8g0384351 34.706 170 75 8 13 178 9 146 4.88e-24 95.1
Msa0377080 MtrunA17_Chr8g0345731 37.313 134 75 4 14 140 24 155 5.67e-24 94.4
Msa0377080 MtrunA17_Chr2g0321741 42.593 108 55 3 35 139 13 116 6.52e-24 98.2
Msa0377080 MtrunA17_Chr8g0345711 36.567 134 77 4 14 142 12 142 2.15e-23 92.8
Msa0377080 MtrunA17_Chr3g0113031 45.263 95 46 3 77 171 5 93 8.73e-21 88.2
Msa0377080 MtrunA17_Chr8g0345701 33.784 148 74 6 12 140 5 147 8.90e-21 86.3
Msa0377080 MtrunA17_Chr3g0130321 31.288 163 96 5 13 168 6 159 3.72e-19 82.8
Msa0377080 MtrunA17_Chr7g0274971 30.645 186 104 10 20 193 11 183 3.96e-13 66.2
Msa0377080 MtrunA17_Chr7g0251651 29.771 131 82 4 13 139 17 141 1.45e-12 64.3
Msa0377080 MtrunA17_Chr7g0251661 29.197 137 87 4 7 139 3 133 7.36e-12 61.6
Msa0377080 MtrunA17_Chr7g0251671 29.861 144 87 6 7 144 3 138 1.74e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377080 AT5G13180.1 51.364 220 80 5 1 203 1 210 3.99e-68 211
Msa0377080 AT2G33480.1 57.143 175 63 5 1 174 1 164 2.08e-63 199
Msa0377080 AT2G33480.2 56.000 175 63 4 1 174 1 162 4.67e-63 198
Msa0377080 AT3G04070.2 49.432 176 77 4 8 175 4 175 2.18e-54 178
Msa0377080 AT1G01720.1 39.823 226 123 5 13 236 6 220 8.05e-52 170
Msa0377080 AT3G04070.1 45.833 192 76 5 8 175 4 191 6.99e-51 169
Msa0377080 AT1G77450.1 45.503 189 86 5 6 185 1 181 6.05e-50 164
Msa0377080 AT1G61110.1 49.718 177 68 4 10 173 12 180 2.30e-49 164
Msa0377080 AT1G69490.1 46.857 175 81 4 12 180 7 175 3.62e-49 162
Msa0377080 AT3G15510.1 50.000 160 71 3 18 170 21 178 2.49e-47 160
Msa0377080 AT4G27410.2 46.541 159 73 3 14 170 14 162 2.51e-46 156
Msa0377080 AT1G52890.1 47.531 162 73 3 14 173 14 165 2.35e-45 154
Msa0377080 AT5G08790.1 48.125 160 75 3 14 171 7 160 2.73e-45 153
Msa0377080 AT1G12260.2 45.349 172 77 4 9 175 2 161 2.93e-45 154
Msa0377080 AT3G15500.1 44.199 181 85 4 14 192 14 180 3.34e-45 154
Msa0377080 AT5G39610.1 47.531 162 71 5 14 171 20 171 8.59e-45 152
Msa0377080 AT1G12260.1 45.349 172 77 4 9 175 2 161 8.65e-45 154
Msa0377080 AT4G17980.1 45.455 165 80 3 10 170 2 160 9.15e-45 151
Msa0377080 AT5G46590.1 45.000 180 79 4 10 185 2 165 9.74e-45 152
Msa0377080 AT1G52880.1 49.375 160 77 2 18 173 21 180 9.81e-45 152
Msa0377080 AT5G63790.1 47.500 160 76 3 14 171 50 203 2.05e-44 151
Msa0377080 AT4G17980.2 45.455 165 80 3 10 170 2 160 2.08e-44 151
Msa0377080 AT5G63790.2 47.500 160 76 3 14 171 60 213 2.66e-44 151
Msa0377080 AT1G62700.1 46.429 168 73 4 9 171 2 157 4.90e-44 152
Msa0377080 AT1G62700.2 46.429 168 73 4 9 171 2 157 4.90e-44 152
Msa0377080 AT1G33060.1 47.205 161 71 3 14 170 24 174 7.84e-44 156
Msa0377080 AT1G33060.2 47.205 161 71 3 14 170 24 174 9.43e-44 156
Msa0377080 AT4G27410.3 43.182 176 71 4 14 170 14 179 9.59e-44 150
Msa0377080 AT5G39820.1 44.509 173 75 4 16 170 22 191 2.52e-43 149
Msa0377080 AT5G62380.2 42.941 170 80 3 11 175 4 161 3.19e-43 149
Msa0377080 AT5G62380.1 42.941 170 80 3 11 175 4 161 3.19e-43 149
Msa0377080 AT5G66300.1 40.000 225 112 8 14 231 12 220 3.41e-43 148
Msa0377080 AT5G46590.2 48.052 154 71 3 10 159 2 150 7.87e-43 147
Msa0377080 AT1G65910.1 45.963 161 73 3 14 170 6 156 1.33e-42 152
Msa0377080 AT5G07680.1 45.283 159 77 4 14 170 17 167 1.78e-42 147
Msa0377080 AT5G07680.2 45.283 159 77 4 14 170 3 153 1.91e-42 146
Msa0377080 AT4G35580.3 46.626 163 69 4 14 170 9 159 2.52e-42 150
Msa0377080 AT4G36160.1 46.012 163 71 4 14 171 10 160 2.67e-42 147
Msa0377080 AT4G36160.3 46.012 163 71 4 14 171 10 160 2.67e-42 147
Msa0377080 AT4G35580.2 46.626 163 69 4 14 170 9 159 2.74e-42 150
Msa0377080 AT5G61430.1 45.283 159 77 4 14 170 16 166 2.78e-42 147
Msa0377080 AT4G36160.2 46.012 163 71 4 14 171 14 164 2.87e-42 147
Msa0377080 AT3G10480.2 45.342 161 74 3 14 170 27 177 3.00e-42 149
Msa0377080 AT4G35580.1 46.626 163 69 4 14 170 9 159 3.15e-42 150
Msa0377080 AT3G10490.1 45.062 162 74 4 14 170 27 178 3.21e-42 144
Msa0377080 AT2G46770.1 43.182 176 82 5 9 171 11 181 3.35e-42 147
Msa0377080 AT2G18060.3 46.012 163 71 4 14 171 9 159 6.39e-42 146
Msa0377080 AT2G18060.1 46.012 163 71 4 14 171 9 159 6.39e-42 146
Msa0377080 AT3G03200.1 45.963 161 74 5 14 170 6 157 1.30e-41 148
Msa0377080 AT5G17260.1 45.679 162 73 4 14 170 6 157 1.66e-41 147
Msa0377080 AT1G79580.3 44.910 167 75 5 10 171 13 167 1.72e-41 145
Msa0377080 AT1G79580.5 44.910 167 75 5 10 171 13 167 1.72e-41 145
Msa0377080 AT1G79580.4 44.910 167 75 5 10 171 13 167 1.72e-41 145
Msa0377080 AT1G79580.2 44.910 167 75 5 10 171 13 167 1.72e-41 145
Msa0377080 AT1G79580.1 44.910 167 75 5 10 171 13 167 1.72e-41 145
Msa0377080 AT3G10480.1 45.679 162 73 4 14 170 27 178 2.73e-41 146
Msa0377080 AT1G71930.2 44.643 168 76 4 12 174 7 162 2.96e-41 144
Msa0377080 AT1G71930.1 44.643 168 76 4 12 174 7 162 2.96e-41 144
Msa0377080 AT1G32770.1 42.222 180 87 5 3 171 5 178 3.13e-41 144
Msa0377080 AT1G33280.1 44.172 163 73 3 14 171 8 157 3.32e-41 143
Msa0377080 AT3G61910.1 41.989 181 85 6 4 170 1 175 4.08e-41 144
Msa0377080 AT3G04060.1 42.857 168 75 4 11 170 17 171 7.19e-41 143
Msa0377080 AT4G10350.1 43.558 163 77 3 14 171 9 161 7.68e-41 143
Msa0377080 AT3G10490.2 45.062 162 74 4 14 170 27 178 1.42e-40 145
Msa0377080 AT3G17730.1 44.099 161 76 4 14 170 6 156 3.07e-40 139
Msa0377080 AT1G32510.1 43.605 172 85 3 12 176 4 170 3.34e-40 140
Msa0377080 AT5G24590.2 37.500 232 126 7 11 235 10 229 4.80e-40 143
Msa0377080 AT2G43000.1 46.835 158 71 5 16 170 20 167 1.01e-39 138
Msa0377080 AT1G26870.1 44.444 162 83 3 14 170 16 175 1.48e-39 141
Msa0377080 AT3G18400.1 44.025 159 76 4 14 170 5 152 2.62e-39 138
Msa0377080 AT3G29035.1 48.462 130 61 2 14 141 24 149 5.97e-39 137
Msa0377080 AT2G24430.2 41.358 162 84 3 14 173 16 168 8.54e-39 137
Msa0377080 AT2G24430.1 41.358 162 84 3 14 173 16 168 8.54e-39 137
Msa0377080 AT1G76420.1 42.690 171 75 6 14 175 22 178 1.87e-38 137
Msa0377080 AT5G18270.1 41.420 169 90 4 4 170 11 172 3.72e-38 136
Msa0377080 AT5G18270.2 41.420 169 90 4 4 170 11 172 3.84e-38 136
Msa0377080 AT2G17040.1 42.500 160 78 4 16 173 8 155 4.24e-38 134
Msa0377080 AT3G10500.1 42.458 179 81 5 8 178 3 167 5.06e-38 139
Msa0377080 AT1G54330.1 41.615 161 77 3 14 170 6 153 5.72e-38 134
Msa0377080 AT2G02450.1 43.293 164 78 5 16 177 53 203 9.17e-38 136
Msa0377080 AT2G02450.2 43.293 164 78 5 16 177 53 203 1.75e-37 135
Msa0377080 AT5G53950.1 42.138 159 84 4 14 170 17 169 2.46e-37 134
Msa0377080 AT3G12977.1 42.857 161 77 6 14 170 18 167 3.53e-37 132
Msa0377080 AT3G15170.1 38.323 167 83 4 12 170 18 172 1.65e-36 131
Msa0377080 AT3G10480.3 38.384 198 74 5 11 170 24 211 3.15e-36 134
Msa0377080 AT3G49530.2 39.506 162 85 3 14 171 13 165 4.01e-36 132
Msa0377080 AT1G56010.2 38.690 168 91 5 12 175 17 176 6.07e-36 130
Msa0377080 AT1G34190.1 40.719 167 85 3 16 178 18 174 9.29e-36 133
Msa0377080 AT3G49530.1 39.506 162 85 3 14 171 13 165 9.52e-36 132
Msa0377080 AT5G04410.1 38.983 177 90 4 8 178 3 167 2.59e-35 132
Msa0377080 AT3G12910.1 42.073 164 85 4 16 170 23 185 5.29e-35 127
Msa0377080 AT1G34180.3 40.120 167 86 3 16 178 18 174 1.08e-34 129
Msa0377080 AT1G34180.1 40.120 167 86 3 16 178 18 174 2.93e-34 129
Msa0377080 AT1G34180.4 37.989 179 85 3 16 178 18 186 1.09e-33 126
Msa0377080 AT2G33480.3 52.586 116 44 4 59 174 3 107 1.66e-33 120
Msa0377080 AT5G09330.5 41.379 174 86 4 10 178 2 164 2.51e-33 125
Msa0377080 AT5G09330.2 41.379 174 86 4 10 178 2 164 2.51e-33 125
Msa0377080 AT5G09330.4 41.379 174 86 4 10 178 2 164 2.51e-33 125
Msa0377080 AT5G09330.3 41.379 174 86 4 10 178 2 164 2.51e-33 125
Msa0377080 AT5G09330.1 41.379 174 86 4 10 178 2 164 2.51e-33 125
Msa0377080 AT1G34180.2 37.989 179 85 3 16 178 18 186 2.55e-33 127
Msa0377080 AT4G28530.1 40.761 184 79 7 7 172 3 174 2.86e-32 120
Msa0377080 AT5G64060.1 38.788 165 87 3 10 170 2 156 7.90e-32 119
Msa0377080 AT3G44290.1 30.453 243 148 5 7 240 7 237 9.14e-31 116
Msa0377080 AT2G27300.1 41.353 133 71 2 10 139 10 138 2.48e-30 115
Msa0377080 AT3G44290.2 36.301 146 86 2 7 149 7 148 3.75e-30 112
Msa0377080 AT5G04395.1 39.583 144 71 2 14 142 28 170 4.18e-30 111
Msa0377080 AT5G50820.1 36.571 175 100 5 5 176 7 173 3.33e-29 108
Msa0377080 AT5G22290.1 39.370 127 70 2 16 139 23 145 1.41e-28 110
Msa0377080 AT1G32870.2 40.678 177 87 6 7 178 5 168 2.02e-27 110
Msa0377080 AT1G32870.1 40.678 177 87 6 7 178 5 168 2.32e-27 109
Msa0377080 AT1G32870.3 40.678 177 87 6 7 178 41 204 2.62e-27 109
Msa0377080 AT4G01520.1 43.796 137 68 5 15 144 5 139 4.71e-26 103
Msa0377080 AT4G01550.1 40.881 159 77 5 17 170 7 153 5.59e-26 105
Msa0377080 AT4G01540.2 43.704 135 67 5 17 144 7 139 1.82e-25 103
Msa0377080 AT4G01540.4 43.704 135 67 5 17 144 7 139 2.37e-25 102
Msa0377080 AT4G01540.1 43.704 135 67 5 17 144 7 139 2.43e-25 103
Msa0377080 AT5G64530.1 34.682 173 91 5 14 177 3 162 2.67e-25 98.6
Msa0377080 AT4G01540.3 43.704 135 67 5 17 144 7 139 3.35e-25 102
Msa0377080 AT5G61430.2 45.794 107 50 3 64 170 5 103 8.81e-25 99.4
Msa0377080 AT3G44350.2 36.364 165 90 6 17 174 8 164 3.32e-24 97.1
Msa0377080 AT5G64530.2 41.085 129 62 4 14 141 3 118 3.94e-24 94.7
Msa0377080 AT4G10350.2 43.243 111 53 2 61 171 14 114 6.34e-24 97.4
Msa0377080 AT3G12977.2 43.119 109 51 3 63 170 16 114 8.01e-24 95.9
Msa0377080 AT1G02230.1 39.456 147 76 5 15 155 4 143 1.47e-23 97.8
Msa0377080 AT1G56010.1 40.708 113 58 3 64 175 5 109 2.31e-23 95.5
Msa0377080 AT5G14000.1 31.977 172 100 4 6 174 7 164 2.95e-23 94.0
Msa0377080 AT3G44350.1 37.162 148 81 5 17 157 8 150 5.91e-23 91.7
Msa0377080 AT5G14000.2 34.694 147 88 3 7 150 8 149 9.25e-23 91.3
Msa0377080 AT5G22380.1 32.990 194 111 6 17 198 8 194 1.97e-22 92.4
Msa0377080 AT3G10490.4 47.727 88 35 3 84 170 1 78 6.27e-20 87.4
Msa0377080 AT3G10490.3 47.727 88 35 3 84 170 1 78 6.27e-20 87.4
Msa0377080 AT1G01010.1 38.806 134 68 5 17 139 6 136 9.63e-19 84.7
Msa0377080 AT1G02250.1 34.591 159 84 6 15 167 4 148 1.42e-18 84.0
Msa0377080 AT2G43000.2 48.421 95 38 4 77 170 5 89 2.32e-18 80.5
Msa0377080 AT3G04420.2 38.406 138 69 5 15 143 4 134 2.53e-18 82.4
Msa0377080 AT3G04420.1 38.406 138 69 5 15 143 4 134 3.40e-18 82.8
Msa0377080 AT3G56530.1 31.515 165 86 7 14 168 52 199 3.42e-16 76.6
Msa0377080 AT2G18060.2 45.122 82 33 2 90 171 2 71 3.90e-16 76.3
Msa0377080 AT4G28530.2 41.228 114 49 3 7 102 3 116 6.98e-16 75.9
Msa0377080 AT1G02220.1 35.897 156 76 7 15 156 4 149 5.61e-14 70.9
Msa0377080 AT3G55210.1 27.374 179 94 7 14 173 11 172 2.25e-11 62.8
Msa0377080 AT3G04430.1 27.320 194 116 7 20 191 6 196 6.68e-11 60.5
Msa0377080 AT5G50820.2 31.304 115 73 2 64 176 14 124 8.06e-11 58.9

Find 58 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTACTCTATTAAATTAATT+TGG 0.174987 3_1:-77455435 None:intergenic
CAATTAACTTTGCAGATAAA+AGG 0.257603 3_1:-77456719 None:intergenic
GCGAGTGCTGTTTCGATACT+TGG 0.265925 3_1:-77456076 None:intergenic
GAACAACCAACTCTGGTTAT+TGG 0.282547 3_1:+77456106 Msa0377080:CDS
CCTTTGTGACTTGGTGGATT+TGG 0.295504 3_1:-77455456 None:intergenic
TGAGAATGAGAAACATATAA+AGG 0.347214 3_1:-77455561 None:intergenic
CAAAACTATGGAAACGAGAT+AGG 0.347341 3_1:+77456439 Msa0377080:CDS
TGGGTGTATTTATATATAAC+AGG 0.355069 3_1:-77455585 None:intergenic
ATAAAGGGGACAATGCTTAC+TGG 0.376325 3_1:-77455545 None:intergenic
CTCATAAAATCAAAGAATCT+TGG 0.393607 3_1:-77456568 None:intergenic
CAATGAGTTCGAGATCCATT+TGG 0.411374 3_1:-77456228 None:intergenic
TTAATTGTTTATGTCTATTG+AGG 0.414525 3_1:+77456735 Msa0377080:three_prime_UTR
GAGAATGAGAAACATATAAA+GGG 0.416901 3_1:-77455560 None:intergenic
ATCTCAGGAATAATTGAAAC+AGG 0.426831 3_1:-77455824 None:intergenic
ATTAGTATTCATCACCGTAT+TGG 0.436278 3_1:-77456530 None:intergenic
AATTGAAACAGGCAATTGAT+AGG 0.447346 3_1:-77455813 None:intergenic
AAAAGAAGTAATATAGAAAA+CGG 0.451498 3_1:+77456493 Msa0377080:CDS
TTCAGCCTCATACCTCAAAC+TGG 0.463030 3_1:+77455642 Msa0377080:five_prime_UTR
TTTGACCAGTTTGAGGTATG+AGG 0.466659 3_1:-77455647 None:intergenic
TCTGGTTATTGGAAGGCAAC+AGG 0.467118 3_1:+77456117 Msa0377080:CDS
AGAAACTACTGCTTGCAATC+AGG 0.467745 3_1:+77456281 Msa0377080:CDS
AAGATACCTTTGTGACTTGG+TGG 0.482220 3_1:-77455462 None:intergenic
TATCAAGGAAAATCTCCAAA+TGG 0.482794 3_1:+77456213 Msa0377080:CDS
CAGTAGTTTCTAAGCTAACT+AGG 0.483639 3_1:-77456269 None:intergenic
ATGGAAACGAGATAGGGAAC+TGG 0.484070 3_1:+77456446 Msa0377080:CDS
CTAAGTACCTGGCAAATCCC+AGG 0.494406 3_1:-77455867 None:intergenic
CAAATGGATCTCGAACTCAT+TGG 0.497017 3_1:+77456229 Msa0377080:CDS
TGAGGTATGAGGCTGAAGAT+AGG 0.502619 3_1:-77455636 None:intergenic
CGAATATGTATATACGTGCA+TGG 0.513077 3_1:-77455605 None:intergenic
TGCCTTCCAATAACCAGAGT+TGG 0.519375 3_1:-77456112 None:intergenic
TTTAAGATACCTTTGTGACT+TGG 0.524451 3_1:-77455465 None:intergenic
TACTTGCAGACATTGATCTC+AGG 0.525771 3_1:-77455839 None:intergenic
TATGATCCCTGGGATTTGCC+AGG 0.534942 3_1:+77455860 Msa0377080:CDS
GCGATTCCATTACTTAGTGA+TGG 0.546006 3_1:-77456165 None:intergenic
TCACTAAGTAATGGAATCGC+GGG 0.550284 3_1:+77456168 Msa0377080:CDS
TGGGTGCAGATGCAAAACTA+TGG 0.562905 3_1:+77456427 Msa0377080:intron
ATGTCTGCAAGTATGATCCC+TGG 0.565949 3_1:+77455849 Msa0377080:CDS
GTTTCTCCATCACTAAGTAA+TGG 0.566664 3_1:+77456159 Msa0377080:CDS
CTTAAAATGCAGTAAATGTG+TGG 0.567602 3_1:+77455482 Msa0377080:five_prime_UTR
AAGACGAGCTCTTCGTCCGT+TGG 0.567604 3_1:-77455764 None:intergenic
GGTGTAAGCAGATTGCCTCC+TGG 0.568317 3_1:+77455728 Msa0377080:CDS
TAAGTATTTCTTCAGCAGCA+AGG 0.575313 3_1:+77456050 Msa0377080:CDS
ATGAACAGAACAACCAACTC+TGG 0.580063 3_1:+77456099 Msa0377080:CDS
TGTCTGCAAGTATGATCCCT+GGG 0.580596 3_1:+77455850 Msa0377080:CDS
GAATATGTATATACGTGCAT+GGG 0.580727 3_1:-77455604 None:intergenic
AACCAACTCTGGTTATTGGA+AGG 0.581092 3_1:+77456110 Msa0377080:CDS
GAGGGTACACAACTCAGCTC+CGG 0.583774 3_1:+77456588 Msa0377080:CDS
ATCACTAAGTAATGGAATCG+CGG 0.598075 3_1:+77456167 Msa0377080:CDS
GTCTTGTTCAAGTTCGAGTG+AGG 0.604087 3_1:+77456639 Msa0377080:CDS
AAAACTATGGAAACGAGATA+GGG 0.606762 3_1:+77456440 Msa0377080:CDS
GGTGATGAATACTAATGTTG+AGG 0.614852 3_1:+77456537 Msa0377080:CDS
CCAAATCCACCAAGTCACAA+AGG 0.628851 3_1:+77455456 Msa0377080:five_prime_UTR
TAAGTACCTGGCAAATCCCA+GGG 0.629531 3_1:-77455866 None:intergenic
AGAATGAGAAACATATAAAG+GGG 0.633099 3_1:-77455559 None:intergenic
TGTGTGTAATTAGGAAATTG+TGG 0.633496 3_1:+77456018 Msa0377080:intron
TTACATGATGAAGACCAATA+CGG 0.642498 3_1:+77456516 Msa0377080:CDS
TGGAAACGAGATAGGGAACT+GGG 0.648812 3_1:+77456447 Msa0377080:CDS
TCTTCATCAGAAGAAAGATG+CGG 0.710283 3_1:+77456664 Msa0377080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACCAAATTATTTATATA+TGG - chr3_1:77455986-77456005 None:intergenic 10.0%
!! TTAACCAAATTATTTATATA+TGG - chr3_1:77455986-77456005 None:intergenic 10.0%
!! ATAGCCATATATAAATAATT+TGG + chr3_1:77455979-77455998 Msa0377080:intron 15.0%
!! AAAAGAAGTAATATAGAAAA+CGG + chr3_1:77456493-77456512 Msa0377080:CDS 15.0%
!! ATAGCCATATATAAATAATT+TGG + chr3_1:77455979-77455998 Msa0377080:intron 15.0%
!! AAAAGAAGTAATATAGAAAA+CGG + chr3_1:77456493-77456512 Msa0377080:CDS 15.0%
!! GGTACTCTATTAAATTAATT+TGG - chr3_1:77455438-77455457 None:intergenic 20.0%
!!! AAAAGTCTTGTATTTTATCA+AGG + chr3_1:77456198-77456217 Msa0377080:CDS 20.0%
!! AGGACTATATATATGATTAA+TGG - chr3_1:77456318-77456337 None:intergenic 20.0%
!!! AAGATTCTTTGATTTTATGA+GGG + chr3_1:77456570-77456589 Msa0377080:CDS 20.0%
!! TTAATTGTTTATGTCTATTG+AGG + chr3_1:77456735-77456754 Msa0377080:three_prime_UTR 20.0%
!! GGTACTCTATTAAATTAATT+TGG - chr3_1:77455438-77455457 None:intergenic 20.0%
!!! AAAAGTCTTGTATTTTATCA+AGG + chr3_1:77456198-77456217 Msa0377080:CDS 20.0%
!! AGGACTATATATATGATTAA+TGG - chr3_1:77456318-77456337 None:intergenic 20.0%
!!! AAGATTCTTTGATTTTATGA+GGG + chr3_1:77456570-77456589 Msa0377080:CDS 20.0%
!! TTAATTGTTTATGTCTATTG+AGG + chr3_1:77456735-77456754 Msa0377080:three_prime_UTR 20.0%
! AGAATGAGAAACATATAAAG+GGG - chr3_1:77455562-77455581 None:intergenic 25.0%
! GAGAATGAGAAACATATAAA+GGG - chr3_1:77455563-77455582 None:intergenic 25.0%
! TGAGAATGAGAAACATATAA+AGG - chr3_1:77455564-77455583 None:intergenic 25.0%
! TGGGTGTATTTATATATAAC+AGG - chr3_1:77455588-77455607 None:intergenic 25.0%
!!! AAGAGAAAGTTTTAAGCAAA+TGG + chr3_1:77455682-77455701 Msa0377080:exon 25.0%
!! AAGCTGAATTTTGTGAAAAA+TGG + chr3_1:77455707-77455726 Msa0377080:CDS 25.0%
!! TTTTATGTGTGTGTGTAATT+AGG + chr3_1:77456009-77456028 Msa0377080:intron 25.0%
! CTCATAAAATCAAAGAATCT+TGG - chr3_1:77456571-77456590 None:intergenic 25.0%
!!! CAAGATTCTTTGATTTTATG+AGG + chr3_1:77456569-77456588 Msa0377080:CDS 25.0%
! CAATTAACTTTGCAGATAAA+AGG - chr3_1:77456722-77456741 None:intergenic 25.0%
! AGAATGAGAAACATATAAAG+GGG - chr3_1:77455562-77455581 None:intergenic 25.0%
! GAGAATGAGAAACATATAAA+GGG - chr3_1:77455563-77455582 None:intergenic 25.0%
! TGAGAATGAGAAACATATAA+AGG - chr3_1:77455564-77455583 None:intergenic 25.0%
! TGGGTGTATTTATATATAAC+AGG - chr3_1:77455588-77455607 None:intergenic 25.0%
!!! AAGAGAAAGTTTTAAGCAAA+TGG + chr3_1:77455682-77455701 Msa0377080:exon 25.0%
!! AAGCTGAATTTTGTGAAAAA+TGG + chr3_1:77455707-77455726 Msa0377080:CDS 25.0%
!! TTTTATGTGTGTGTGTAATT+AGG + chr3_1:77456009-77456028 Msa0377080:intron 25.0%
! CTCATAAAATCAAAGAATCT+TGG - chr3_1:77456571-77456590 None:intergenic 25.0%
!!! CAAGATTCTTTGATTTTATG+AGG + chr3_1:77456569-77456588 Msa0377080:CDS 25.0%
! CAATTAACTTTGCAGATAAA+AGG - chr3_1:77456722-77456741 None:intergenic 25.0%
! TTTAAGATACCTTTGTGACT+TGG - chr3_1:77455468-77455487 None:intergenic 30.0%
CTTAAAATGCAGTAAATGTG+TGG + chr3_1:77455482-77455501 Msa0377080:five_prime_UTR 30.0%
GAATATGTATATACGTGCAT+GGG - chr3_1:77455607-77455626 None:intergenic 30.0%
AATTGAAACAGGCAATTGAT+AGG - chr3_1:77455816-77455835 None:intergenic 30.0%
ATCTCAGGAATAATTGAAAC+AGG - chr3_1:77455827-77455846 None:intergenic 30.0%
TGTGTGTAATTAGGAAATTG+TGG + chr3_1:77456018-77456037 Msa0377080:intron 30.0%
TATCAAGGAAAATCTCCAAA+TGG + chr3_1:77456213-77456232 Msa0377080:CDS 30.0%
!! TTGTCACTTTGGTTGTAAAA+AGG - chr3_1:77456338-77456357 None:intergenic 30.0%
ATGCCTTAACTGTTAAATGT+TGG + chr3_1:77456407-77456426 Msa0377080:intron 30.0%
TGCCTTAACTGTTAAATGTT+GGG + chr3_1:77456408-77456427 Msa0377080:intron 30.0%
AAAACTATGGAAACGAGATA+GGG + chr3_1:77456440-77456459 Msa0377080:CDS 30.0%
TTACATGATGAAGACCAATA+CGG + chr3_1:77456516-77456535 Msa0377080:CDS 30.0%
ATTAGTATTCATCACCGTAT+TGG - chr3_1:77456533-77456552 None:intergenic 30.0%
ATCTAGAAAAATGAGCAGTA+GGG - chr3_1:77456615-77456634 None:intergenic 30.0%
! TTTAAGATACCTTTGTGACT+TGG - chr3_1:77455468-77455487 None:intergenic 30.0%
CTTAAAATGCAGTAAATGTG+TGG + chr3_1:77455482-77455501 Msa0377080:five_prime_UTR 30.0%
GAATATGTATATACGTGCAT+GGG - chr3_1:77455607-77455626 None:intergenic 30.0%
AATTGAAACAGGCAATTGAT+AGG - chr3_1:77455816-77455835 None:intergenic 30.0%
ATCTCAGGAATAATTGAAAC+AGG - chr3_1:77455827-77455846 None:intergenic 30.0%
TGTGTGTAATTAGGAAATTG+TGG + chr3_1:77456018-77456037 Msa0377080:intron 30.0%
TATCAAGGAAAATCTCCAAA+TGG + chr3_1:77456213-77456232 Msa0377080:CDS 30.0%
!! TTGTCACTTTGGTTGTAAAA+AGG - chr3_1:77456338-77456357 None:intergenic 30.0%
ATGCCTTAACTGTTAAATGT+TGG + chr3_1:77456407-77456426 Msa0377080:intron 30.0%
TGCCTTAACTGTTAAATGTT+GGG + chr3_1:77456408-77456427 Msa0377080:intron 30.0%
AAAACTATGGAAACGAGATA+GGG + chr3_1:77456440-77456459 Msa0377080:CDS 30.0%
TTACATGATGAAGACCAATA+CGG + chr3_1:77456516-77456535 Msa0377080:CDS 30.0%
ATTAGTATTCATCACCGTAT+TGG - chr3_1:77456533-77456552 None:intergenic 30.0%
ATCTAGAAAAATGAGCAGTA+GGG - chr3_1:77456615-77456634 None:intergenic 30.0%
CGAATATGTATATACGTGCA+TGG - chr3_1:77455608-77455627 None:intergenic 35.0%
!! TCTTGATTTTGACCAGTTTG+AGG - chr3_1:77455657-77455676 None:intergenic 35.0%
!!! TGGTTTTTGTTTTCAGCCAA+CGG + chr3_1:77455748-77455767 Msa0377080:CDS 35.0%
TAAGTATTTCTTCAGCAGCA+AGG + chr3_1:77456050-77456069 Msa0377080:CDS 35.0%
GTTTCTCCATCACTAAGTAA+TGG + chr3_1:77456159-77456178 Msa0377080:CDS 35.0%
! ATCACTAAGTAATGGAATCG+CGG + chr3_1:77456167-77456186 Msa0377080:CDS 35.0%
CAGTAGTTTCTAAGCTAACT+AGG - chr3_1:77456272-77456291 None:intergenic 35.0%
CACCCAACATTTAACAGTTA+AGG - chr3_1:77456413-77456432 None:intergenic 35.0%
CAAAACTATGGAAACGAGAT+AGG + chr3_1:77456439-77456458 Msa0377080:CDS 35.0%
GGTGATGAATACTAATGTTG+AGG + chr3_1:77456537-77456556 Msa0377080:CDS 35.0%
GATCTAGAAAAATGAGCAGT+AGG - chr3_1:77456616-77456635 None:intergenic 35.0%
TCTTCATCAGAAGAAAGATG+CGG + chr3_1:77456664-77456683 Msa0377080:CDS 35.0%
ATGCTTGAGAATTGTTACTC+TGG + chr3_1:77456770-77456789 Msa0377080:three_prime_UTR 35.0%
CGAATATGTATATACGTGCA+TGG - chr3_1:77455608-77455627 None:intergenic 35.0%
!! TCTTGATTTTGACCAGTTTG+AGG - chr3_1:77455657-77455676 None:intergenic 35.0%
!!! TGGTTTTTGTTTTCAGCCAA+CGG + chr3_1:77455748-77455767 Msa0377080:CDS 35.0%
TAAGTATTTCTTCAGCAGCA+AGG + chr3_1:77456050-77456069 Msa0377080:CDS 35.0%
GTTTCTCCATCACTAAGTAA+TGG + chr3_1:77456159-77456178 Msa0377080:CDS 35.0%
! ATCACTAAGTAATGGAATCG+CGG + chr3_1:77456167-77456186 Msa0377080:CDS 35.0%
CAGTAGTTTCTAAGCTAACT+AGG - chr3_1:77456272-77456291 None:intergenic 35.0%
CACCCAACATTTAACAGTTA+AGG - chr3_1:77456413-77456432 None:intergenic 35.0%
CAAAACTATGGAAACGAGAT+AGG + chr3_1:77456439-77456458 Msa0377080:CDS 35.0%
GGTGATGAATACTAATGTTG+AGG + chr3_1:77456537-77456556 Msa0377080:CDS 35.0%
GATCTAGAAAAATGAGCAGT+AGG - chr3_1:77456616-77456635 None:intergenic 35.0%
TCTTCATCAGAAGAAAGATG+CGG + chr3_1:77456664-77456683 Msa0377080:CDS 35.0%
! AAGATACCTTTGTGACTTGG+TGG - chr3_1:77455465-77455484 None:intergenic 40.0%
ATAAAGGGGACAATGCTTAC+TGG - chr3_1:77455548-77455567 None:intergenic 40.0%
! TTTGACCAGTTTGAGGTATG+AGG - chr3_1:77455650-77455669 None:intergenic 40.0%
GTTGGCTGAAAACAAAAACC+AGG - chr3_1:77455749-77455768 None:intergenic 40.0%
TACTTGCAGACATTGATCTC+AGG - chr3_1:77455842-77455861 None:intergenic 40.0%
ATGAACAGAACAACCAACTC+TGG + chr3_1:77456099-77456118 Msa0377080:CDS 40.0%
GAACAACCAACTCTGGTTAT+TGG + chr3_1:77456106-77456125 Msa0377080:CDS 40.0%
AACCAACTCTGGTTATTGGA+AGG + chr3_1:77456110-77456129 Msa0377080:CDS 40.0%
GCGATTCCATTACTTAGTGA+TGG - chr3_1:77456168-77456187 None:intergenic 40.0%
! TCACTAAGTAATGGAATCGC+GGG + chr3_1:77456168-77456187 Msa0377080:CDS 40.0%
CAATGAGTTCGAGATCCATT+TGG - chr3_1:77456231-77456250 None:intergenic 40.0%
CAAATGGATCTCGAACTCAT+TGG + chr3_1:77456229-77456248 Msa0377080:CDS 40.0%
AGAAACTACTGCTTGCAATC+AGG + chr3_1:77456281-77456300 Msa0377080:CDS 40.0%
! CAATTCGGTCATTGTCACTT+TGG - chr3_1:77456349-77456368 None:intergenic 40.0%
CAAAGTGACAATGACCGAAT+TGG + chr3_1:77456347-77456366 Msa0377080:intron 40.0%
! AAGATACCTTTGTGACTTGG+TGG - chr3_1:77455465-77455484 None:intergenic 40.0%
ATAAAGGGGACAATGCTTAC+TGG - chr3_1:77455548-77455567 None:intergenic 40.0%
! TTTGACCAGTTTGAGGTATG+AGG - chr3_1:77455650-77455669 None:intergenic 40.0%
GTTGGCTGAAAACAAAAACC+AGG - chr3_1:77455749-77455768 None:intergenic 40.0%
TACTTGCAGACATTGATCTC+AGG - chr3_1:77455842-77455861 None:intergenic 40.0%
ATGAACAGAACAACCAACTC+TGG + chr3_1:77456099-77456118 Msa0377080:CDS 40.0%
GAACAACCAACTCTGGTTAT+TGG + chr3_1:77456106-77456125 Msa0377080:CDS 40.0%
AACCAACTCTGGTTATTGGA+AGG + chr3_1:77456110-77456129 Msa0377080:CDS 40.0%
GCGATTCCATTACTTAGTGA+TGG - chr3_1:77456168-77456187 None:intergenic 40.0%
! TCACTAAGTAATGGAATCGC+GGG + chr3_1:77456168-77456187 Msa0377080:CDS 40.0%
CAATGAGTTCGAGATCCATT+TGG - chr3_1:77456231-77456250 None:intergenic 40.0%
CAAATGGATCTCGAACTCAT+TGG + chr3_1:77456229-77456248 Msa0377080:CDS 40.0%
AGAAACTACTGCTTGCAATC+AGG + chr3_1:77456281-77456300 Msa0377080:CDS 40.0%
! CAATTCGGTCATTGTCACTT+TGG - chr3_1:77456349-77456368 None:intergenic 40.0%
CAAAGTGACAATGACCGAAT+TGG + chr3_1:77456347-77456366 Msa0377080:intron 40.0%
!! CCTTTGTGACTTGGTGGATT+TGG - chr3_1:77455459-77455478 None:intergenic 45.0%
CCAAATCCACCAAGTCACAA+AGG + chr3_1:77455456-77455475 Msa0377080:five_prime_UTR 45.0%
TGAGGTATGAGGCTGAAGAT+AGG - chr3_1:77455639-77455658 None:intergenic 45.0%
TTCAGCCTCATACCTCAAAC+TGG + chr3_1:77455642-77455661 Msa0377080:five_prime_UTR 45.0%
GGCTGAAAACAAAAACCAGG+AGG - chr3_1:77455746-77455765 None:intergenic 45.0%
ATGTCTGCAAGTATGATCCC+TGG + chr3_1:77455849-77455868 Msa0377080:CDS 45.0%
TGTCTGCAAGTATGATCCCT+GGG + chr3_1:77455850-77455869 Msa0377080:CDS 45.0%
TAAGTACCTGGCAAATCCCA+GGG - chr3_1:77455869-77455888 None:intergenic 45.0%
TGCCAGGTACTTAGCAAACT+AGG + chr3_1:77455876-77455895 Msa0377080:intron 45.0%
!! AGCCTAGTTTGCTAAGTACC+TGG - chr3_1:77455881-77455900 None:intergenic 45.0%
TGCCTTCCAATAACCAGAGT+TGG - chr3_1:77456115-77456134 None:intergenic 45.0%
TCTGGTTATTGGAAGGCAAC+AGG + chr3_1:77456117-77456136 Msa0377080:CDS 45.0%
TGCCACGATCTACTCCAATT+CGG - chr3_1:77456364-77456383 None:intergenic 45.0%
TGGGTGCAGATGCAAAACTA+TGG + chr3_1:77456427-77456446 Msa0377080:intron 45.0%
ATGGAAACGAGATAGGGAAC+TGG + chr3_1:77456446-77456465 Msa0377080:CDS 45.0%
TGGAAACGAGATAGGGAACT+GGG + chr3_1:77456447-77456466 Msa0377080:CDS 45.0%
GAAAAATGAGCAGTAGGGTC+CGG - chr3_1:77456610-77456629 None:intergenic 45.0%
! GTCTTGTTCAAGTTCGAGTG+AGG + chr3_1:77456639-77456658 Msa0377080:CDS 45.0%
!! CCTTTGTGACTTGGTGGATT+TGG - chr3_1:77455459-77455478 None:intergenic 45.0%
CCAAATCCACCAAGTCACAA+AGG + chr3_1:77455456-77455475 Msa0377080:five_prime_UTR 45.0%
TGAGGTATGAGGCTGAAGAT+AGG - chr3_1:77455639-77455658 None:intergenic 45.0%
TTCAGCCTCATACCTCAAAC+TGG + chr3_1:77455642-77455661 Msa0377080:five_prime_UTR 45.0%
GGCTGAAAACAAAAACCAGG+AGG - chr3_1:77455746-77455765 None:intergenic 45.0%
ATGTCTGCAAGTATGATCCC+TGG + chr3_1:77455849-77455868 Msa0377080:CDS 45.0%
TGTCTGCAAGTATGATCCCT+GGG + chr3_1:77455850-77455869 Msa0377080:CDS 45.0%
TAAGTACCTGGCAAATCCCA+GGG - chr3_1:77455869-77455888 None:intergenic 45.0%
TGCCAGGTACTTAGCAAACT+AGG + chr3_1:77455876-77455895 Msa0377080:intron 45.0%
!! AGCCTAGTTTGCTAAGTACC+TGG - chr3_1:77455881-77455900 None:intergenic 45.0%
TGCCTTCCAATAACCAGAGT+TGG - chr3_1:77456115-77456134 None:intergenic 45.0%
TCTGGTTATTGGAAGGCAAC+AGG + chr3_1:77456117-77456136 Msa0377080:CDS 45.0%
TGCCACGATCTACTCCAATT+CGG - chr3_1:77456364-77456383 None:intergenic 45.0%
TGGGTGCAGATGCAAAACTA+TGG + chr3_1:77456427-77456446 Msa0377080:intron 45.0%
ATGGAAACGAGATAGGGAAC+TGG + chr3_1:77456446-77456465 Msa0377080:CDS 45.0%
TGGAAACGAGATAGGGAACT+GGG + chr3_1:77456447-77456466 Msa0377080:CDS 45.0%
GAAAAATGAGCAGTAGGGTC+CGG - chr3_1:77456610-77456629 None:intergenic 45.0%
! GTCTTGTTCAAGTTCGAGTG+AGG + chr3_1:77456639-77456658 Msa0377080:CDS 45.0%
TATGATCCCTGGGATTTGCC+AGG + chr3_1:77455860-77455879 Msa0377080:CDS 50.0%
CTAAGTACCTGGCAAATCCC+AGG - chr3_1:77455870-77455889 None:intergenic 50.0%
!! GCGAGTGCTGTTTCGATACT+TGG - chr3_1:77456079-77456098 None:intergenic 50.0%
GACCGAATTGGAGTAGATCG+TGG + chr3_1:77456359-77456378 Msa0377080:intron 50.0%
TATGATCCCTGGGATTTGCC+AGG + chr3_1:77455860-77455879 Msa0377080:CDS 50.0%
CTAAGTACCTGGCAAATCCC+AGG - chr3_1:77455870-77455889 None:intergenic 50.0%
!! GCGAGTGCTGTTTCGATACT+TGG - chr3_1:77456079-77456098 None:intergenic 50.0%
GACCGAATTGGAGTAGATCG+TGG + chr3_1:77456359-77456378 Msa0377080:intron 50.0%
GGTGTAAGCAGATTGCCTCC+TGG + chr3_1:77455728-77455747 Msa0377080:CDS 55.0%
AAGACGAGCTCTTCGTCCGT+TGG - chr3_1:77455767-77455786 None:intergenic 55.0%
! GAGGGTACACAACTCAGCTC+CGG + chr3_1:77456588-77456607 Msa0377080:CDS 55.0%
GGTGTAAGCAGATTGCCTCC+TGG + chr3_1:77455728-77455747 Msa0377080:CDS 55.0%
AAGACGAGCTCTTCGTCCGT+TGG - chr3_1:77455767-77455786 None:intergenic 55.0%
! GAGGGTACACAACTCAGCTC+CGG + chr3_1:77456588-77456607 Msa0377080:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 77455434 77456791 77455434 ID=Msa0377080;Name=Msa0377080
chr3_1 mRNA 77455434 77456791 77455434 ID=Msa0377080-mRNA-1;Parent=Msa0377080;Name=Msa0377080-mRNA-1;_AED=0.04;_eAED=0.04;_QI=267|1|1|1|1|1|3|83|241
chr3_1 exon 77455434 77455881 77455434 ID=Msa0377080-mRNA-1:exon:18515;Parent=Msa0377080-mRNA-1
chr3_1 exon 77456031 77456302 77456031 ID=Msa0377080-mRNA-1:exon:18516;Parent=Msa0377080-mRNA-1
chr3_1 exon 77456436 77456791 77456436 ID=Msa0377080-mRNA-1:exon:18517;Parent=Msa0377080-mRNA-1
chr3_1 five_prime_UTR 77455434 77455700 77455434 ID=Msa0377080-mRNA-1:five_prime_utr;Parent=Msa0377080-mRNA-1
chr3_1 CDS 77455701 77455881 77455701 ID=Msa0377080-mRNA-1:cds;Parent=Msa0377080-mRNA-1
chr3_1 CDS 77456031 77456302 77456031 ID=Msa0377080-mRNA-1:cds;Parent=Msa0377080-mRNA-1
chr3_1 CDS 77456436 77456708 77456436 ID=Msa0377080-mRNA-1:cds;Parent=Msa0377080-mRNA-1
chr3_1 three_prime_UTR 77456709 77456791 77456709 ID=Msa0377080-mRNA-1:three_prime_utr;Parent=Msa0377080-mRNA-1
Gene Sequence

>Msa0377080

ATGGAAAAGCTGAATTTTGTGAAAAATGGTGTAAGCAGATTGCCTCCTGGTTTTTGTTTTCAGCCAACGGACGAAGAGCTCGTCTTTCATTACTTGAAATGCAAGATCTTCTCCTATCAATTGCCTGTTTCAATTATTCCTGAGATCAATGTCTGCAAGTATGATCCCTGGGATTTGCCAGGAAATTGTGGTGAGCAAGATAAGTATTTCTTCAGCAGCAAGGAAGCCAAGTATCGAAACAGCACTCGCATGAACAGAACAACCAACTCTGGTTATTGGAAGGCAACAGGATCAGACAAGAAAGTTAGTGTTTCTCCATCACTAAGTAATGGAATCGCGGGAATAAGAAAAAGTCTTGTATTTTATCAAGGAAAATCTCCAAATGGATCTCGAACTCATTGGATCATGCATGAATATCGCCTAGTTAGCTTAGAAACTACTGCTTGCAATCAGATGCAAAACTATGGAAACGAGATAGGGAACTGGGTTTTGTGTCGTATATTCACGAAGAAAAGAAGTAATATAGAAAACGGTTACATGATGAAGACCAATACGGTGATGAATACTAATGTTGAGGTAGCTCAGCCAAGATTCTTTGATTTTATGAGGGTACACAACTCAGCTCCGGACCCTACTGCTCATTTTTCTAGATCATCGTCTTGTTCAAGTTCGAGTGAGGTCTCTTCATCAGAAGAAAGATGCGGCGATATATATACTGATTTTTAA
Protein sequence

>Msa0377080

MEKLNFVKNGVSRLPPGFCFQPTDEELVFHYLKCKIFSYQLPVSIIPEINVCKYDPWDLPGNCGEQDKYFFSSKEAKYRNSTRMNRTTNSGYWKATGSDKKVSVSPSLSNGIAGIRKSLVFYQGKSPNGSRTHWIMHEYRLVSLETTACNQMQNYGNEIGNWVLCRIFTKKRSNIENGYMMKTNTVMNTNVEVAQPRFFDFMRVHNSAPDPTAHFSRSSSCSSSSEVSSSEERCGDIYTDF*