Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382880 | XP_003603445.1 | 100.000 | 77 | 0 | 0 | 3 | 79 | 65 | 141 | 1.80e-47 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382880 | G7JBM9 | 100.000 | 77 | 0 | 0 | 3 | 79 | 65 | 141 | 8.59e-48 | 157 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0382880 | Msa0477010 | 0.882211 | 1.259858e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382880 | MtrunA17_Chr6g0477991 | 42.105 | 76 | 40 | 3 | 3 | 78 | 29 | 100 | 4.41e-14 | 61.6 |
| Msa0382880 | MtrunA17_Chr3g0137931 | 42.105 | 76 | 40 | 2 | 3 | 78 | 77 | 148 | 2.68e-13 | 60.8 |
| Msa0382880 | MtrunA17_Chr6g0476161 | 44.118 | 68 | 34 | 3 | 3 | 70 | 14 | 77 | 6.47e-12 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAATAAATTTCTACTTTC+AGG | 0.148845 | 3_1:-85652838 | None:intergenic |
| GAGCACAATCTTCTGTTTCT+AGG | 0.213213 | 3_1:+85654444 | Msa0382880:CDS |
| GTTCAGCTGGAGAAGGTATA+TGG | 0.236425 | 3_1:+85654315 | Msa0382880:intron |
| TTCAGGTGAAATTATTGATT+TGG | 0.251404 | 3_1:-85652821 | None:intergenic |
| AAGACAGCGACGGCGTGTTT+TGG | 0.285235 | 3_1:+85654254 | Msa0382880:intron |
| GTTCCTCGGACTTGCATTCC+TGG | 0.318288 | 3_1:+85654392 | Msa0382880:CDS |
| AGAGGAGAAGGATGATGATT+AGG | 0.369225 | 3_1:-85653952 | None:intergenic |
| GAAGGATGATGATTAGGTAT+TGG | 0.373122 | 3_1:-85653946 | None:intergenic |
| TAACAGTATTGATAGGCAAC+AGG | 0.402579 | 3_1:+85653773 | Msa0382880:intron |
| CTGCGTTGACTTTGGCTAAA+CGG | 0.414214 | 3_1:+85653824 | Msa0382880:five_prime_UTR |
| TTTCCGTCGAGCAACATGTT+TGG | 0.450035 | 3_1:+85654293 | Msa0382880:exon |
| TTGGAATTCGATGTTTATCA+AGG | 0.457331 | 3_1:-85654537 | None:intergenic |
| TTTGAAGTGACCACATCATC+AGG | 0.458585 | 3_1:+85653273 | Msa0382880:five_prime_UTR |
| AAATTATTGATTTGGATCGC+TGG | 0.466977 | 3_1:-85652813 | None:intergenic |
| TTCTGTTTCTAGGCCTTCAT+CGG | 0.477067 | 3_1:+85654454 | Msa0382880:CDS |
| CTCTATGTAACAGTATTGAT+AGG | 0.516275 | 3_1:+85653766 | Msa0382880:intron |
| GATGATGATTAGGTATTGGA+AGG | 0.531918 | 3_1:-85653942 | None:intergenic |
| ACAATGGTGCAGCGTGTGGG+AGG | 0.533075 | 3_1:+85654339 | Msa0382880:CDS |
| GTATAAGTGCAGCTGTTCCT+CGG | 0.534469 | 3_1:+85654378 | Msa0382880:CDS |
| TGAACAGTGTTGAGAGGAGA+AGG | 0.536418 | 3_1:-85653964 | None:intergenic |
| TTCAGCTGGAGAAGGTATAT+GGG | 0.539255 | 3_1:+85654316 | Msa0382880:intron |
| AACATTTGCAATGATCTGAA+AGG | 0.560268 | 3_1:-85654507 | None:intergenic |
| AGTGGATGAACAGTGTTGAG+AGG | 0.562506 | 3_1:-85653970 | None:intergenic |
| ATGGAAGTATCATCCGATGA+AGG | 0.570347 | 3_1:-85654467 | None:intergenic |
| TTCATCGGATGATACTTCCA+TGG | 0.589310 | 3_1:+85654469 | Msa0382880:CDS |
| TGGGACAATGGTGCAGCGTG+TGG | 0.603898 | 3_1:+85654335 | Msa0382880:CDS |
| TTAATCTGAATAGTTTGACC+AGG | 0.609627 | 3_1:-85654410 | None:intergenic |
| GGGACAATGGTGCAGCGTGT+GGG | 0.613332 | 3_1:+85654336 | Msa0382880:CDS |
| TGCAATGATCTGAAAGGCAG+TGG | 0.623356 | 3_1:-85654501 | None:intergenic |
| AACAGTATTGATAGGCAACA+GGG | 0.624522 | 3_1:+85653774 | Msa0382880:intron |
| GGCAGTGGTGGAAAGAACCA+TGG | 0.636283 | 3_1:-85654486 | None:intergenic |
| GAACCAAACATGTTGCTCGA+CGG | 0.639586 | 3_1:-85654296 | None:intergenic |
| GGAGAAGGTATATGGGACAA+TGG | 0.640344 | 3_1:+85654323 | Msa0382880:intron |
| GTATTGATAGGCAACAGGGT+TGG | 0.658613 | 3_1:+85653778 | Msa0382880:intron |
| AGCGTGTGGGAGGCTGTATG+AGG | 0.663788 | 3_1:+85654349 | Msa0382880:CDS |
| AATGATCTGAAAGGCAGTGG+TGG | 0.664140 | 3_1:-85654498 | None:intergenic |
| GTGGGAGGCTGTATGAGGTG+AGG | 0.677893 | 3_1:+85654354 | Msa0382880:CDS |
| TGACCAGGAATGCAAGTCCG+AGG | 0.678065 | 3_1:-85654395 | None:intergenic |
| CATGGACGTACCTGATGATG+TGG | 0.686912 | 3_1:-85653283 | None:intergenic |
| GGAACGTGACAAGACAGCGA+CGG | 0.706963 | 3_1:+85654244 | Msa0382880:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTTATAATTTAAAAAA+TGG | + | chr3_1:85653533-85653552 | Msa0382880:intron | 0.0% |
| !! | AATATTTATAATTTAAAAAA+TGG | + | chr3_1:85653533-85653552 | Msa0382880:intron | 0.0% |
| !! | ATAATGAAAATATTCTAAAT+AGG | - | chr3_1:85652964-85652983 | None:intergenic | 10.0% |
| !! | GTATATTGATAAAAAAATTA+TGG | - | chr3_1:85653607-85653626 | None:intergenic | 10.0% |
| !! | ATAATGAAAATATTCTAAAT+AGG | - | chr3_1:85652964-85652983 | None:intergenic | 10.0% |
| !! | GTATATTGATAAAAAAATTA+TGG | - | chr3_1:85653607-85653626 | None:intergenic | 10.0% |
| !! | TCTAATAAATTTCTACTTTC+AGG | - | chr3_1:85652841-85652860 | None:intergenic | 20.0% |
| !!! | TTAAGTTTAAAATTGTGCAT+TGG | + | chr3_1:85653126-85653145 | Msa0382880:intron | 20.0% |
| !! | AAACAAAACTTAATTTACTC+TGG | - | chr3_1:85653355-85653374 | None:intergenic | 20.0% |
| !!! | TAGTATATTTTTTTATCGAG+AGG | + | chr3_1:85653630-85653649 | Msa0382880:intron | 20.0% |
| !!! | GATTCTCTTTTTAAATCTAA+CGG | - | chr3_1:85654119-85654138 | None:intergenic | 20.0% |
| !! | TCTAATAAATTTCTACTTTC+AGG | - | chr3_1:85652841-85652860 | None:intergenic | 20.0% |
| !!! | TTAAGTTTAAAATTGTGCAT+TGG | + | chr3_1:85653126-85653145 | Msa0382880:intron | 20.0% |
| !! | AAACAAAACTTAATTTACTC+TGG | - | chr3_1:85653355-85653374 | None:intergenic | 20.0% |
| !!! | TAGTATATTTTTTTATCGAG+AGG | + | chr3_1:85653630-85653649 | Msa0382880:intron | 20.0% |
| !!! | GATTCTCTTTTTAAATCTAA+CGG | - | chr3_1:85654119-85654138 | None:intergenic | 20.0% |
| !! | TTCAGGTGAAATTATTGATT+TGG | - | chr3_1:85652824-85652843 | None:intergenic | 25.0% |
| ! | CTAAATAGGTCAAGTAATAT+GGG | - | chr3_1:85652950-85652969 | None:intergenic | 25.0% |
| ! | TCTAAATAGGTCAAGTAATA+TGG | - | chr3_1:85652951-85652970 | None:intergenic | 25.0% |
| !!! | GAGTTTCTAGAGTATTTTAT+GGG | - | chr3_1:85653715-85653734 | None:intergenic | 25.0% |
| ! | AACTAATTGAAGAAACTATG+AGG | - | chr3_1:85653874-85653893 | None:intergenic | 25.0% |
| !!! | AACAAATTTGTTGTGTTTTG+TGG | + | chr3_1:85654223-85654242 | Msa0382880:intron | 25.0% |
| !! | TTCAGGTGAAATTATTGATT+TGG | - | chr3_1:85652824-85652843 | None:intergenic | 25.0% |
| ! | CTAAATAGGTCAAGTAATAT+GGG | - | chr3_1:85652950-85652969 | None:intergenic | 25.0% |
| ! | TCTAAATAGGTCAAGTAATA+TGG | - | chr3_1:85652951-85652970 | None:intergenic | 25.0% |
| !!! | GAGTTTCTAGAGTATTTTAT+GGG | - | chr3_1:85653715-85653734 | None:intergenic | 25.0% |
| ! | AACTAATTGAAGAAACTATG+AGG | - | chr3_1:85653874-85653893 | None:intergenic | 25.0% |
| !!! | AACAAATTTGTTGTGTTTTG+TGG | + | chr3_1:85654223-85654242 | Msa0382880:intron | 25.0% |
| !! | AAATTATTGATTTGGATCGC+TGG | - | chr3_1:85652816-85652835 | None:intergenic | 30.0% |
| AGAAAAATAGAGTCAAAGCA+TGG | - | chr3_1:85652994-85653013 | None:intergenic | 30.0% | |
| TCAACTAGGTCAAGTAATAT+GGG | + | chr3_1:85653163-85653182 | Msa0382880:intron | 30.0% | |
| !!! | CGAGTTTCTAGAGTATTTTA+TGG | - | chr3_1:85653716-85653735 | None:intergenic | 30.0% |
| ! | AGAGACGGATCAAATTTTAT+GGG | - | chr3_1:85653750-85653769 | None:intergenic | 30.0% |
| ! | TAGAGACGGATCAAATTTTA+TGG | - | chr3_1:85653751-85653770 | None:intergenic | 30.0% |
| TCAATACTGTTACATAGAGA+CGG | - | chr3_1:85653765-85653784 | None:intergenic | 30.0% | |
| !! | CTCTATGTAACAGTATTGAT+AGG | + | chr3_1:85653766-85653785 | Msa0382880:intron | 30.0% |
| TTTCTCTCTAAACTCAACAT+CGG | + | chr3_1:85654142-85654161 | Msa0382880:intron | 30.0% | |
| TTAATCTGAATAGTTTGACC+AGG | - | chr3_1:85654413-85654432 | None:intergenic | 30.0% | |
| AACATTTGCAATGATCTGAA+AGG | - | chr3_1:85654510-85654529 | None:intergenic | 30.0% | |
| TTGGAATTCGATGTTTATCA+AGG | - | chr3_1:85654540-85654559 | None:intergenic | 30.0% | |
| !! | AAATTATTGATTTGGATCGC+TGG | - | chr3_1:85652816-85652835 | None:intergenic | 30.0% |
| AGAAAAATAGAGTCAAAGCA+TGG | - | chr3_1:85652994-85653013 | None:intergenic | 30.0% | |
| TCAACTAGGTCAAGTAATAT+GGG | + | chr3_1:85653163-85653182 | Msa0382880:intron | 30.0% | |
| !!! | CGAGTTTCTAGAGTATTTTA+TGG | - | chr3_1:85653716-85653735 | None:intergenic | 30.0% |
| ! | AGAGACGGATCAAATTTTAT+GGG | - | chr3_1:85653750-85653769 | None:intergenic | 30.0% |
| ! | TAGAGACGGATCAAATTTTA+TGG | - | chr3_1:85653751-85653770 | None:intergenic | 30.0% |
| TCAATACTGTTACATAGAGA+CGG | - | chr3_1:85653765-85653784 | None:intergenic | 30.0% | |
| !! | CTCTATGTAACAGTATTGAT+AGG | + | chr3_1:85653766-85653785 | Msa0382880:intron | 30.0% |
| TTTCTCTCTAAACTCAACAT+CGG | + | chr3_1:85654142-85654161 | Msa0382880:intron | 30.0% | |
| TTAATCTGAATAGTTTGACC+AGG | - | chr3_1:85654413-85654432 | None:intergenic | 30.0% | |
| AACATTTGCAATGATCTGAA+AGG | - | chr3_1:85654510-85654529 | None:intergenic | 30.0% | |
| TTGGAATTCGATGTTTATCA+AGG | - | chr3_1:85654540-85654559 | None:intergenic | 30.0% | |
| ATAGGTCAAGTAATATGGGA+CGG | - | chr3_1:85652946-85652965 | None:intergenic | 35.0% | |
| GTCAACTAGGTCAAGTAATA+TGG | + | chr3_1:85653162-85653181 | Msa0382880:intron | 35.0% | |
| !! | TACTCTGGAGTTTAATGAGA+TGG | - | chr3_1:85653340-85653359 | None:intergenic | 35.0% |
| !! | TAACAGTATTGATAGGCAAC+AGG | + | chr3_1:85653773-85653792 | Msa0382880:intron | 35.0% |
| !! | AACAGTATTGATAGGCAACA+GGG | + | chr3_1:85653774-85653793 | Msa0382880:intron | 35.0% |
| !!! | AGATTTTTCTGCGTTGACTT+TGG | + | chr3_1:85653816-85653835 | Msa0382880:five_prime_UTR | 35.0% |
| !! | GATGATGATTAGGTATTGGA+AGG | - | chr3_1:85653945-85653964 | None:intergenic | 35.0% |
| GAAGGATGATGATTAGGTAT+TGG | - | chr3_1:85653949-85653968 | None:intergenic | 35.0% | |
| ATAGGTCAAGTAATATGGGA+CGG | - | chr3_1:85652946-85652965 | None:intergenic | 35.0% | |
| GTCAACTAGGTCAAGTAATA+TGG | + | chr3_1:85653162-85653181 | Msa0382880:intron | 35.0% | |
| !! | TACTCTGGAGTTTAATGAGA+TGG | - | chr3_1:85653340-85653359 | None:intergenic | 35.0% |
| !! | TAACAGTATTGATAGGCAAC+AGG | + | chr3_1:85653773-85653792 | Msa0382880:intron | 35.0% |
| !! | AACAGTATTGATAGGCAACA+GGG | + | chr3_1:85653774-85653793 | Msa0382880:intron | 35.0% |
| !!! | AGATTTTTCTGCGTTGACTT+TGG | + | chr3_1:85653816-85653835 | Msa0382880:five_prime_UTR | 35.0% |
| !! | GATGATGATTAGGTATTGGA+AGG | - | chr3_1:85653945-85653964 | None:intergenic | 35.0% |
| GAAGGATGATGATTAGGTAT+TGG | - | chr3_1:85653949-85653968 | None:intergenic | 35.0% | |
| CTAGGTCAAGTAATATGGGA+CGG | + | chr3_1:85653167-85653186 | Msa0382880:intron | 40.0% | |
| ! | TTTGAAGTGACCACATCATC+AGG | + | chr3_1:85653273-85653292 | Msa0382880:five_prime_UTR | 40.0% |
| AAGAAGAATCATGAAGCGCA+TGG | - | chr3_1:85653304-85653323 | None:intergenic | 40.0% | |
| AACCAGTAACTACCAACCAA+GGG | + | chr3_1:85653561-85653580 | Msa0382880:intron | 40.0% | |
| AAATTATGGGTCTCTGATGC+CGG | - | chr3_1:85653593-85653612 | None:intergenic | 40.0% | |
| AGTCAACGCAGAAAAATCTG+TGG | - | chr3_1:85653815-85653834 | None:intergenic | 40.0% | |
| AGAGGAGAAGGATGATGATT+AGG | - | chr3_1:85653955-85653974 | None:intergenic | 40.0% | |
| TAAAAAGGGAGGGCTGTAAT+GGG | - | chr3_1:85654023-85654042 | None:intergenic | 40.0% | |
| ! | ACAACTGATAATGCGCCAAA+CGG | - | chr3_1:85654091-85654110 | None:intergenic | 40.0% |
| ! | TTCAGCTGGAGAAGGTATAT+GGG | + | chr3_1:85654316-85654335 | Msa0382880:intron | 40.0% |
| ! | GAGCACAATCTTCTGTTTCT+AGG | + | chr3_1:85654444-85654463 | Msa0382880:CDS | 40.0% |
| !! | TTCTGTTTCTAGGCCTTCAT+CGG | + | chr3_1:85654454-85654473 | Msa0382880:CDS | 40.0% |
| !! | ATGGAAGTATCATCCGATGA+AGG | - | chr3_1:85654470-85654489 | None:intergenic | 40.0% |
| TTCATCGGATGATACTTCCA+TGG | + | chr3_1:85654469-85654488 | Msa0382880:CDS | 40.0% | |
| CTAGGTCAAGTAATATGGGA+CGG | + | chr3_1:85653167-85653186 | Msa0382880:intron | 40.0% | |
| ! | TTTGAAGTGACCACATCATC+AGG | + | chr3_1:85653273-85653292 | Msa0382880:five_prime_UTR | 40.0% |
| AAGAAGAATCATGAAGCGCA+TGG | - | chr3_1:85653304-85653323 | None:intergenic | 40.0% | |
| AACCAGTAACTACCAACCAA+GGG | + | chr3_1:85653561-85653580 | Msa0382880:intron | 40.0% | |
| AAATTATGGGTCTCTGATGC+CGG | - | chr3_1:85653593-85653612 | None:intergenic | 40.0% | |
| AGTCAACGCAGAAAAATCTG+TGG | - | chr3_1:85653815-85653834 | None:intergenic | 40.0% | |
| AGAGGAGAAGGATGATGATT+AGG | - | chr3_1:85653955-85653974 | None:intergenic | 40.0% | |
| TAAAAAGGGAGGGCTGTAAT+GGG | - | chr3_1:85654023-85654042 | None:intergenic | 40.0% | |
| ! | ACAACTGATAATGCGCCAAA+CGG | - | chr3_1:85654091-85654110 | None:intergenic | 40.0% |
| ! | TTCAGCTGGAGAAGGTATAT+GGG | + | chr3_1:85654316-85654335 | Msa0382880:intron | 40.0% |
| ! | GAGCACAATCTTCTGTTTCT+AGG | + | chr3_1:85654444-85654463 | Msa0382880:CDS | 40.0% |
| !! | TTCTGTTTCTAGGCCTTCAT+CGG | + | chr3_1:85654454-85654473 | Msa0382880:CDS | 40.0% |
| !! | ATGGAAGTATCATCCGATGA+AGG | - | chr3_1:85654470-85654489 | None:intergenic | 40.0% |
| TTCATCGGATGATACTTCCA+TGG | + | chr3_1:85654469-85654488 | Msa0382880:CDS | 40.0% | |
| GTCAAGTAATATGGGACGGA+GGG | - | chr3_1:85653171-85653190 | None:intergenic | 45.0% | |
| CATACGTGACAGAGTCAACT+AGG | + | chr3_1:85653149-85653168 | Msa0382880:intron | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | + | chr3_1:85653171-85653190 | Msa0382880:intron | 45.0% | |
| !! | CTTGGTTGGTAGTTACTGGT+TGG | - | chr3_1:85653562-85653581 | None:intergenic | 45.0% |
| CAACCAGTAACTACCAACCA+AGG | + | chr3_1:85653560-85653579 | Msa0382880:intron | 45.0% | |
| ! | GTATTGATAGGCAACAGGGT+TGG | + | chr3_1:85653778-85653797 | Msa0382880:intron | 45.0% |
| !! | CTGCGTTGACTTTGGCTAAA+CGG | + | chr3_1:85653824-85653843 | Msa0382880:five_prime_UTR | 45.0% |
| ! | TGAACAGTGTTGAGAGGAGA+AGG | - | chr3_1:85653967-85653986 | None:intergenic | 45.0% |
| ! | AGTGGATGAACAGTGTTGAG+AGG | - | chr3_1:85653973-85653992 | None:intergenic | 45.0% |
| GTAAAAAGGGAGGGCTGTAA+TGG | - | chr3_1:85654024-85654043 | None:intergenic | 45.0% | |
| GGCACTTACGTAAAAAGGGA+GGG | - | chr3_1:85654033-85654052 | None:intergenic | 45.0% | |
| AGAGGATGTGGCTATTGTTG+AGG | - | chr3_1:85654067-85654086 | None:intergenic | 45.0% | |
| TTTCCGTCGAGCAACATGTT+TGG | + | chr3_1:85654293-85654312 | Msa0382880:exon | 45.0% | |
| GAACCAAACATGTTGCTCGA+CGG | - | chr3_1:85654299-85654318 | None:intergenic | 45.0% | |
| ! | AGCAACATGTTTGGTTCAGC+TGG | + | chr3_1:85654302-85654321 | Msa0382880:intron | 45.0% |
| ! | ATGTTTGGTTCAGCTGGAGA+AGG | + | chr3_1:85654308-85654327 | Msa0382880:intron | 45.0% |
| ! | GTTCAGCTGGAGAAGGTATA+TGG | + | chr3_1:85654315-85654334 | Msa0382880:intron | 45.0% |
| ! | GGAGAAGGTATATGGGACAA+TGG | + | chr3_1:85654323-85654342 | Msa0382880:intron | 45.0% |
| GTATAAGTGCAGCTGTTCCT+CGG | + | chr3_1:85654378-85654397 | Msa0382880:CDS | 45.0% | |
| AATGATCTGAAAGGCAGTGG+TGG | - | chr3_1:85654501-85654520 | None:intergenic | 45.0% | |
| TGCAATGATCTGAAAGGCAG+TGG | - | chr3_1:85654504-85654523 | None:intergenic | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | - | chr3_1:85653171-85653190 | None:intergenic | 45.0% | |
| CATACGTGACAGAGTCAACT+AGG | + | chr3_1:85653149-85653168 | Msa0382880:intron | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | + | chr3_1:85653171-85653190 | Msa0382880:intron | 45.0% | |
| !! | CTTGGTTGGTAGTTACTGGT+TGG | - | chr3_1:85653562-85653581 | None:intergenic | 45.0% |
| CAACCAGTAACTACCAACCA+AGG | + | chr3_1:85653560-85653579 | Msa0382880:intron | 45.0% | |
| ! | GTATTGATAGGCAACAGGGT+TGG | + | chr3_1:85653778-85653797 | Msa0382880:intron | 45.0% |
| !! | CTGCGTTGACTTTGGCTAAA+CGG | + | chr3_1:85653824-85653843 | Msa0382880:five_prime_UTR | 45.0% |
| ! | TGAACAGTGTTGAGAGGAGA+AGG | - | chr3_1:85653967-85653986 | None:intergenic | 45.0% |
| ! | AGTGGATGAACAGTGTTGAG+AGG | - | chr3_1:85653973-85653992 | None:intergenic | 45.0% |
| GTAAAAAGGGAGGGCTGTAA+TGG | - | chr3_1:85654024-85654043 | None:intergenic | 45.0% | |
| GGCACTTACGTAAAAAGGGA+GGG | - | chr3_1:85654033-85654052 | None:intergenic | 45.0% | |
| AGAGGATGTGGCTATTGTTG+AGG | - | chr3_1:85654067-85654086 | None:intergenic | 45.0% | |
| TTTCCGTCGAGCAACATGTT+TGG | + | chr3_1:85654293-85654312 | Msa0382880:exon | 45.0% | |
| GAACCAAACATGTTGCTCGA+CGG | - | chr3_1:85654299-85654318 | None:intergenic | 45.0% | |
| ! | AGCAACATGTTTGGTTCAGC+TGG | + | chr3_1:85654302-85654321 | Msa0382880:intron | 45.0% |
| ! | ATGTTTGGTTCAGCTGGAGA+AGG | + | chr3_1:85654308-85654327 | Msa0382880:intron | 45.0% |
| ! | GTTCAGCTGGAGAAGGTATA+TGG | + | chr3_1:85654315-85654334 | Msa0382880:intron | 45.0% |
| ! | GGAGAAGGTATATGGGACAA+TGG | + | chr3_1:85654323-85654342 | Msa0382880:intron | 45.0% |
| GTATAAGTGCAGCTGTTCCT+CGG | + | chr3_1:85654378-85654397 | Msa0382880:CDS | 45.0% | |
| AATGATCTGAAAGGCAGTGG+TGG | - | chr3_1:85654501-85654520 | None:intergenic | 45.0% | |
| TGCAATGATCTGAAAGGCAG+TGG | - | chr3_1:85654504-85654523 | None:intergenic | 45.0% | |
| !! | TATATTGATAAAAAAATTAT+GGG | - | chr3_1:85653606-85653625 | None:intergenic | 5.0% |
| !! | TATATTGATAAAAAAATTAT+GGG | - | chr3_1:85653606-85653625 | None:intergenic | 5.0% |
| GGTCAAGTAATATGGGACGG+AGG | - | chr3_1:85653170-85653189 | None:intergenic | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | + | chr3_1:85653170-85653189 | Msa0382880:intron | 50.0% | |
| ! | CATGGACGTACCTGATGATG+TGG | - | chr3_1:85653286-85653305 | None:intergenic | 50.0% |
| CAGTAACTACCAACCAAGGG+CGG | + | chr3_1:85653564-85653583 | Msa0382880:intron | 50.0% | |
| CAACGTCAGCTTGAGAGAAG+TGG | - | chr3_1:85653991-85654010 | None:intergenic | 50.0% | |
| CACTTCTCTCAAGCTGACGT+TGG | + | chr3_1:85653989-85654008 | Msa0382880:intron | 50.0% | |
| GGGCACTTACGTAAAAAGGG+AGG | - | chr3_1:85654034-85654053 | None:intergenic | 50.0% | |
| !! | GGGGGGCACTTACGTAAAAA+GGG | - | chr3_1:85654037-85654056 | None:intergenic | 50.0% |
| !! | AGGGGGGCACTTACGTAAAA+AGG | - | chr3_1:85654038-85654057 | None:intergenic | 50.0% |
| TATTGTTGAGGCAGAGGAGG+GGG | - | chr3_1:85654055-85654074 | None:intergenic | 50.0% | |
| CTATTGTTGAGGCAGAGGAG+GGG | - | chr3_1:85654056-85654075 | None:intergenic | 50.0% | |
| GCTATTGTTGAGGCAGAGGA+GGG | - | chr3_1:85654057-85654076 | None:intergenic | 50.0% | |
| TGTGGCTATTGTTGAGGCAG+AGG | - | chr3_1:85654061-85654080 | None:intergenic | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | - | chr3_1:85653170-85653189 | None:intergenic | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | + | chr3_1:85653170-85653189 | Msa0382880:intron | 50.0% | |
| ! | CATGGACGTACCTGATGATG+TGG | - | chr3_1:85653286-85653305 | None:intergenic | 50.0% |
| CAGTAACTACCAACCAAGGG+CGG | + | chr3_1:85653564-85653583 | Msa0382880:intron | 50.0% | |
| CAACGTCAGCTTGAGAGAAG+TGG | - | chr3_1:85653991-85654010 | None:intergenic | 50.0% | |
| CACTTCTCTCAAGCTGACGT+TGG | + | chr3_1:85653989-85654008 | Msa0382880:intron | 50.0% | |
| GGGCACTTACGTAAAAAGGG+AGG | - | chr3_1:85654034-85654053 | None:intergenic | 50.0% | |
| !! | GGGGGGCACTTACGTAAAAA+GGG | - | chr3_1:85654037-85654056 | None:intergenic | 50.0% |
| !! | AGGGGGGCACTTACGTAAAA+AGG | - | chr3_1:85654038-85654057 | None:intergenic | 50.0% |
| TATTGTTGAGGCAGAGGAGG+GGG | - | chr3_1:85654055-85654074 | None:intergenic | 50.0% | |
| CTATTGTTGAGGCAGAGGAG+GGG | - | chr3_1:85654056-85654075 | None:intergenic | 50.0% | |
| GCTATTGTTGAGGCAGAGGA+GGG | - | chr3_1:85654057-85654076 | None:intergenic | 50.0% | |
| TGTGGCTATTGTTGAGGCAG+AGG | - | chr3_1:85654061-85654080 | None:intergenic | 50.0% | |
| !! | CGCCCTTGGTTGGTAGTTAC+TGG | - | chr3_1:85653566-85653585 | None:intergenic | 55.0% |
| TAACTACCAACCAAGGGCGG+TGG | + | chr3_1:85653567-85653586 | Msa0382880:intron | 55.0% | |
| ATTGTTGAGGCAGAGGAGGG+GGG | - | chr3_1:85654054-85654073 | None:intergenic | 55.0% | |
| GGCTATTGTTGAGGCAGAGG+AGG | - | chr3_1:85654058-85654077 | None:intergenic | 55.0% | |
| TAGCCACATCCTCTGCCGTT+TGG | + | chr3_1:85654073-85654092 | Msa0382880:intron | 55.0% | |
| GATAATGCGCCAAACGGCAG+AGG | - | chr3_1:85654085-85654104 | None:intergenic | 55.0% | |
| GGAACGTGACAAGACAGCGA+CGG | + | chr3_1:85654244-85654263 | Msa0382880:intron | 55.0% | |
| ! | AAGACAGCGACGGCGTGTTT+TGG | + | chr3_1:85654254-85654273 | Msa0382880:intron | 55.0% |
| ! | AGACAGCGACGGCGTGTTTT+GGG | + | chr3_1:85654255-85654274 | Msa0382880:intron | 55.0% |
| GTTCCTCGGACTTGCATTCC+TGG | + | chr3_1:85654392-85654411 | Msa0382880:CDS | 55.0% | |
| TGACCAGGAATGCAAGTCCG+AGG | - | chr3_1:85654398-85654417 | None:intergenic | 55.0% | |
| ! | GGCAGTGGTGGAAAGAACCA+TGG | - | chr3_1:85654489-85654508 | None:intergenic | 55.0% |
| !! | CGCCCTTGGTTGGTAGTTAC+TGG | - | chr3_1:85653566-85653585 | None:intergenic | 55.0% |
| TAACTACCAACCAAGGGCGG+TGG | + | chr3_1:85653567-85653586 | Msa0382880:intron | 55.0% | |
| ATTGTTGAGGCAGAGGAGGG+GGG | - | chr3_1:85654054-85654073 | None:intergenic | 55.0% | |
| GGCTATTGTTGAGGCAGAGG+AGG | - | chr3_1:85654058-85654077 | None:intergenic | 55.0% | |
| TAGCCACATCCTCTGCCGTT+TGG | + | chr3_1:85654073-85654092 | Msa0382880:intron | 55.0% | |
| GATAATGCGCCAAACGGCAG+AGG | - | chr3_1:85654085-85654104 | None:intergenic | 55.0% | |
| GGAACGTGACAAGACAGCGA+CGG | + | chr3_1:85654244-85654263 | Msa0382880:intron | 55.0% | |
| ! | AAGACAGCGACGGCGTGTTT+TGG | + | chr3_1:85654254-85654273 | Msa0382880:intron | 55.0% |
| ! | AGACAGCGACGGCGTGTTTT+GGG | + | chr3_1:85654255-85654274 | Msa0382880:intron | 55.0% |
| GTTCCTCGGACTTGCATTCC+TGG | + | chr3_1:85654392-85654411 | Msa0382880:CDS | 55.0% | |
| TGACCAGGAATGCAAGTCCG+AGG | - | chr3_1:85654398-85654417 | None:intergenic | 55.0% | |
| ! | GGCAGTGGTGGAAAGAACCA+TGG | - | chr3_1:85654489-85654508 | None:intergenic | 55.0% |
| ! | GACAGCGACGGCGTGTTTTG+GGG | + | chr3_1:85654256-85654275 | Msa0382880:intron | 60.0% |
| !! | ACAGCGACGGCGTGTTTTGG+GGG | + | chr3_1:85654257-85654276 | Msa0382880:five_prime_UTR | 60.0% |
| TGGGACAATGGTGCAGCGTG+TGG | + | chr3_1:85654335-85654354 | Msa0382880:CDS | 60.0% | |
| GGGACAATGGTGCAGCGTGT+GGG | + | chr3_1:85654336-85654355 | Msa0382880:CDS | 60.0% | |
| ACAATGGTGCAGCGTGTGGG+AGG | + | chr3_1:85654339-85654358 | Msa0382880:CDS | 60.0% | |
| AGCGTGTGGGAGGCTGTATG+AGG | + | chr3_1:85654349-85654368 | Msa0382880:CDS | 60.0% | |
| GTGGGAGGCTGTATGAGGTG+AGG | + | chr3_1:85654354-85654373 | Msa0382880:CDS | 60.0% | |
| ! | GACAGCGACGGCGTGTTTTG+GGG | + | chr3_1:85654256-85654275 | Msa0382880:intron | 60.0% |
| !! | ACAGCGACGGCGTGTTTTGG+GGG | + | chr3_1:85654257-85654276 | Msa0382880:five_prime_UTR | 60.0% |
| TGGGACAATGGTGCAGCGTG+TGG | + | chr3_1:85654335-85654354 | Msa0382880:CDS | 60.0% | |
| GGGACAATGGTGCAGCGTGT+GGG | + | chr3_1:85654336-85654355 | Msa0382880:CDS | 60.0% | |
| ACAATGGTGCAGCGTGTGGG+AGG | + | chr3_1:85654339-85654358 | Msa0382880:CDS | 60.0% | |
| AGCGTGTGGGAGGCTGTATG+AGG | + | chr3_1:85654349-85654368 | Msa0382880:CDS | 60.0% | |
| GTGGGAGGCTGTATGAGGTG+AGG | + | chr3_1:85654354-85654373 | Msa0382880:CDS | 60.0% | |
| TACCAACCAAGGGCGGTGGC+CGG | + | chr3_1:85653571-85653590 | Msa0382880:intron | 65.0% | |
| GCGCCAAACGGCAGAGGATG+TGG | - | chr3_1:85654079-85654098 | None:intergenic | 65.0% | |
| TACCAACCAAGGGCGGTGGC+CGG | + | chr3_1:85653571-85653590 | Msa0382880:intron | 65.0% | |
| GCGCCAAACGGCAGAGGATG+TGG | - | chr3_1:85654079-85654098 | None:intergenic | 65.0% | |
| TGCCGGCCACCGCCCTTGGT+TGG | - | chr3_1:85653576-85653595 | None:intergenic | 75.0% | |
| CTGATGCCGGCCACCGCCCT+TGG | - | chr3_1:85653580-85653599 | None:intergenic | 75.0% | |
| TGCCGGCCACCGCCCTTGGT+TGG | - | chr3_1:85653576-85653595 | None:intergenic | 75.0% | |
| CTGATGCCGGCCACCGCCCT+TGG | - | chr3_1:85653580-85653599 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 85652812 | 85654559 | 85652812 | ID=Msa0382880;Name=Msa0382880 |
| chr3_1 | mRNA | 85652812 | 85654559 | 85652812 | ID=Msa0382880-mRNA-1;Parent=Msa0382880;Name=Msa0382880-mRNA-1;_AED=0.31;_eAED=0.36;_QI=413|0.6|0.5|1|0|0|6|0|79 |
| chr3_1 | exon | 85652812 | 85652933 | 85652812 | ID=Msa0382880-mRNA-1:exon:22466;Parent=Msa0382880-mRNA-1 |
| chr3_1 | exon | 85653192 | 85653294 | 85653192 | ID=Msa0382880-mRNA-1:exon:22467;Parent=Msa0382880-mRNA-1 |
| chr3_1 | exon | 85653779 | 85653845 | 85653779 | ID=Msa0382880-mRNA-1:exon:22468;Parent=Msa0382880-mRNA-1 |
| chr3_1 | exon | 85653912 | 85653981 | 85653912 | ID=Msa0382880-mRNA-1:exon:22469;Parent=Msa0382880-mRNA-1 |
| chr3_1 | exon | 85654257 | 85654314 | 85654257 | ID=Msa0382880-mRNA-1:exon:22470;Parent=Msa0382880-mRNA-1 |
| chr3_1 | exon | 85654330 | 85654559 | 85654330 | ID=Msa0382880-mRNA-1:exon:22471;Parent=Msa0382880-mRNA-1 |
| chr3_1 | five_prime_UTR | 85652812 | 85652933 | 85652812 | ID=Msa0382880-mRNA-1:five_prime_utr;Parent=Msa0382880-mRNA-1 |
| chr3_1 | five_prime_UTR | 85653192 | 85653294 | 85653192 | ID=Msa0382880-mRNA-1:five_prime_utr;Parent=Msa0382880-mRNA-1 |
| chr3_1 | five_prime_UTR | 85653779 | 85653845 | 85653779 | ID=Msa0382880-mRNA-1:five_prime_utr;Parent=Msa0382880-mRNA-1 |
| chr3_1 | five_prime_UTR | 85653912 | 85653981 | 85653912 | ID=Msa0382880-mRNA-1:five_prime_utr;Parent=Msa0382880-mRNA-1 |
| chr3_1 | five_prime_UTR | 85654257 | 85654307 | 85654257 | ID=Msa0382880-mRNA-1:five_prime_utr;Parent=Msa0382880-mRNA-1 |
| chr3_1 | CDS | 85654308 | 85654314 | 85654308 | ID=Msa0382880-mRNA-1:cds;Parent=Msa0382880-mRNA-1 |
| chr3_1 | CDS | 85654330 | 85654559 | 85654330 | ID=Msa0382880-mRNA-1:cds;Parent=Msa0382880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
