AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0386780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386780 MtrunA17_Chr3g0144641 91.791 402 24 4 1 397 1 398 0.0 756
Msa0386780 MtrunA17_Chr4g0035101 53.041 411 112 18 1 397 1 344 7.30e-120 351
Msa0386780 MtrunA17_Chr5g0421111 44.558 294 122 10 114 397 296 558 2.38e-58 199
Msa0386780 MtrunA17_Chr7g0234761 44.051 311 148 9 85 386 218 511 2.71e-53 184
Msa0386780 MtrunA17_Chr8g0339091 43.421 304 140 11 110 397 211 498 9.81e-52 180
Msa0386780 MtrunA17_Chr1g0152131 45.133 226 91 5 146 370 215 408 7.45e-51 176
Msa0386780 MtrunA17_Chr8g0365941 75.472 106 26 0 172 277 287 392 2.81e-49 173
Msa0386780 MtrunA17_Chr8g0363921 58.904 146 48 3 152 291 108 247 2.47e-42 149
Msa0386780 MtrunA17_Chr5g0415291 60.000 135 39 3 146 278 73 194 1.11e-41 147
Msa0386780 MtrunA17_Chr3g0131771 80.899 89 17 0 174 262 131 219 3.19e-41 148
Msa0386780 MtrunA17_Chr7g0258161 61.017 118 38 1 166 283 157 266 5.42e-41 147
Msa0386780 MtrunA17_Chr8g0385911 82.558 86 14 1 185 269 140 225 1.14e-40 146
Msa0386780 MtrunA17_Chr1g0174161 65.347 101 35 0 183 283 153 253 7.73e-40 144
Msa0386780 MtrunA17_Chr6g0484271 69.318 88 25 1 186 271 151 238 5.88e-33 124
Msa0386780 MtrunA17_Chr4g0074161 72.727 66 17 1 190 255 206 270 2.46e-22 97.8
Msa0386780 MtrunA17_Chr1g0190731 69.697 66 19 1 190 255 193 257 2.72e-21 94.4
Msa0386780 MtrunA17_Chr4g0032951 58.462 65 27 0 190 254 355 419 1.12e-15 78.2
Msa0386780 MtrunA17_Chr4g0014771 55.385 65 29 0 190 254 118 182 2.31e-15 74.3
Msa0386780 MtrunA17_Chr2g0329041 55.385 65 29 0 188 252 330 394 3.64e-15 76.6
Msa0386780 MtrunA17_Chr1g0182791 52.174 69 32 1 192 260 319 386 5.22e-15 76.6
Msa0386780 MtrunA17_Chr1g0174271 53.623 69 32 0 190 258 298 366 9.95e-15 75.1
Msa0386780 MtrunA17_Chr1g0193321 45.205 73 39 1 192 264 464 535 1.27e-14 75.9
Msa0386780 MtrunA17_Chr7g0258181 50.000 74 37 0 190 263 243 316 1.52e-14 73.9
Msa0386780 MtrunA17_Chr1g0184841 65.152 66 22 1 190 255 120 184 2.05e-14 73.2
Msa0386780 MtrunA17_Chr3g0087771 46.753 77 41 0 178 254 310 386 3.95e-13 70.5
Msa0386780 MtrunA17_Chr8g0351881 49.231 65 33 0 190 254 316 380 1.72e-12 68.6
Msa0386780 MtrunA17_Chr1g0153241 47.692 65 33 1 192 256 87 150 1.83e-12 67.0
Msa0386780 MtrunA17_Chr1g0152651 44.828 87 45 2 168 254 254 337 3.23e-12 67.4
Msa0386780 MtrunA17_Chr3g0095391 50.000 64 31 1 192 255 311 373 1.06e-11 66.2
Msa0386780 MtrunA17_Chr7g0262691 49.206 63 31 1 193 255 255 316 1.25e-11 65.9
Msa0386780 MtrunA17_Chr7g0270871 27.234 235 143 7 33 266 70 277 1.48e-11 65.5
Msa0386780 MtrunA17_Chr3g0134741 36.364 132 67 4 129 254 172 292 3.19e-11 63.9
Msa0386780 MtrunA17_Chr7g0271251 39.423 104 58 3 156 255 394 496 4.20e-11 64.7
Msa0386780 MtrunA17_Chr5g0402031 53.571 56 25 1 201 256 116 170 4.47e-11 63.9
Msa0386780 MtrunA17_Chr1g0213791 47.059 68 36 0 190 257 265 332 5.63e-11 63.5
Msa0386780 MtrunA17_Chr5g0393721 50.000 64 31 1 191 254 225 287 5.82e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386780 AT4G34530.1 39.891 366 148 13 22 365 15 330 6.01e-59 195
Msa0386780 AT1G68920.1 50.239 209 80 6 171 378 284 469 7.01e-53 183
Msa0386780 AT1G68920.4 50.239 209 80 6 171 378 284 469 7.01e-53 183
Msa0386780 AT1G68920.2 50.239 209 80 6 171 378 284 469 7.01e-53 183
Msa0386780 AT1G68920.3 50.239 209 80 6 171 378 283 468 7.32e-53 183
Msa0386780 AT2G18300.1 44.912 285 105 13 86 366 91 327 4.61e-52 177
Msa0386780 AT3G07340.1 42.000 300 130 8 82 373 173 436 4.76e-52 180
Msa0386780 AT3G07340.2 41.472 299 133 7 82 372 173 437 1.98e-51 178
Msa0386780 AT4G36540.2 43.657 268 102 9 22 279 2 230 3.99e-51 174
Msa0386780 AT2G18300.2 54.404 193 72 7 86 275 91 270 6.14e-51 174
Msa0386780 AT2G18300.3 54.404 193 72 7 86 275 91 270 1.71e-50 174
Msa0386780 AT4G36540.1 43.939 264 99 9 22 275 2 226 2.84e-50 171
Msa0386780 AT3G23690.1 61.268 142 44 3 144 277 140 278 1.94e-48 169
Msa0386780 AT1G10120.2 49.490 196 60 5 174 369 190 346 2.97e-48 168
Msa0386780 AT1G10120.1 49.490 196 60 5 174 369 190 346 2.97e-48 168
Msa0386780 AT5G48560.2 64.444 135 45 3 172 305 284 416 1.72e-46 166
Msa0386780 AT5G48560.1 64.444 135 45 3 172 305 284 416 3.56e-46 166
Msa0386780 AT1G26260.3 61.268 142 42 3 141 277 126 259 4.67e-46 161
Msa0386780 AT1G26260.5 61.268 142 42 3 141 277 155 288 9.92e-46 161
Msa0386780 AT1G26260.4 61.268 142 42 3 141 277 177 310 2.02e-45 161
Msa0386780 AT1G26260.1 61.268 142 42 3 141 277 177 310 2.02e-45 161
Msa0386780 AT1G26260.6 61.268 142 42 3 141 277 177 310 2.02e-45 161
Msa0386780 AT1G26260.2 61.268 142 42 3 141 277 177 310 2.02e-45 161
Msa0386780 AT1G59640.1 53.448 174 63 4 135 306 79 236 1.54e-43 152
Msa0386780 AT5G50915.3 67.544 114 34 2 157 269 105 216 2.38e-43 152
Msa0386780 AT5G50915.4 67.544 114 34 2 157 269 105 216 2.38e-43 152
Msa0386780 AT5G50915.1 67.544 114 34 2 157 269 105 216 7.96e-43 151
Msa0386780 AT5G50915.2 67.544 114 34 2 157 269 105 216 7.96e-43 151
Msa0386780 AT1G59640.2 56.494 154 65 1 135 286 79 232 1.63e-42 152
Msa0386780 AT3G57800.2 55.634 142 55 2 183 317 197 337 1.07e-41 151
Msa0386780 AT2G42300.4 70.968 93 27 0 184 276 179 271 1.50e-41 148
Msa0386780 AT2G42300.1 63.810 105 38 0 184 288 179 283 4.02e-40 145
Msa0386780 AT5G62610.2 81.579 76 14 0 186 261 149 224 4.23e-37 136
Msa0386780 AT5G62610.1 81.579 76 14 0 186 261 149 224 4.23e-37 136
Msa0386780 AT1G18400.2 75.000 80 20 0 188 267 143 222 8.44e-35 129
Msa0386780 AT1G18400.1 75.000 80 20 0 188 267 143 222 1.73e-34 129
Msa0386780 AT1G73830.2 75.949 79 19 0 189 267 146 224 2.61e-34 128
Msa0386780 AT1G73830.1 75.949 79 19 0 189 267 146 224 3.19e-34 128
Msa0386780 AT1G25330.1 65.217 92 32 0 186 277 100 191 2.44e-33 124
Msa0386780 AT3G57800.1 41.799 189 55 3 183 317 197 384 8.46e-33 128
Msa0386780 AT5G58010.1 64.198 81 24 2 189 265 98 177 2.34e-23 99.4
Msa0386780 AT2G24260.2 71.212 66 18 1 190 255 35 99 7.54e-23 97.1
Msa0386780 AT4G30980.1 72.727 66 17 1 190 255 130 194 1.61e-22 97.4
Msa0386780 AT4G30980.2 72.727 66 17 1 190 255 178 242 2.67e-22 97.4
Msa0386780 AT2G24260.1 71.212 66 18 1 190 255 138 202 4.68e-22 96.7
Msa0386780 AT2G42300.5 76.087 46 11 0 184 229 179 224 5.70e-18 82.8
Msa0386780 AT2G42300.3 76.087 46 11 0 184 229 179 224 5.70e-18 82.8
Msa0386780 AT2G42300.2 76.087 46 11 0 184 229 179 224 6.55e-18 82.8
Msa0386780 AT2G42280.3 39.200 125 58 4 140 253 227 344 2.03e-16 80.5
Msa0386780 AT2G42280.1 38.211 123 60 3 140 253 227 342 2.54e-16 80.1
Msa0386780 AT2G20180.7 42.553 94 48 2 162 255 184 271 1.57e-15 78.2
Msa0386780 AT2G20180.1 42.553 94 48 2 162 255 184 271 1.57e-15 78.2
Msa0386780 AT2G20180.5 42.553 94 48 2 162 255 184 271 1.57e-15 78.2
Msa0386780 AT2G20180.4 42.553 94 48 2 162 255 255 342 2.02e-15 78.2
Msa0386780 AT2G20180.6 42.553 94 48 2 162 255 255 342 2.02e-15 78.2
Msa0386780 AT2G20180.2 42.553 94 48 2 162 255 255 342 2.02e-15 78.2
Msa0386780 AT2G20180.3 42.553 94 48 2 162 255 255 342 2.02e-15 78.2
Msa0386780 AT4G28790.1 28.226 248 118 10 82 325 194 385 5.07e-15 76.6
Msa0386780 AT1G51140.1 56.250 64 28 0 190 253 304 367 2.38e-14 74.3
Msa0386780 AT4G09180.1 50.746 67 33 0 188 254 182 248 4.45e-14 72.4
Msa0386780 AT1G03040.2 60.274 73 28 1 183 255 132 203 5.10e-14 72.4
Msa0386780 AT4G28800.1 33.803 142 69 3 193 334 252 368 6.10e-14 73.6
Msa0386780 AT1G03040.1 60.274 73 28 1 183 255 137 208 6.17e-14 72.4
Msa0386780 AT1G09530.3 50.000 64 31 1 192 255 339 401 6.64e-14 73.6
Msa0386780 AT1G09530.2 50.000 64 31 1 192 255 339 401 6.64e-14 73.6
Msa0386780 AT1G09530.5 50.000 64 31 1 192 255 339 401 6.64e-14 73.6
Msa0386780 AT1G09530.1 50.000 64 31 1 192 255 339 401 6.64e-14 73.6
Msa0386780 AT1G09530.4 50.000 64 31 1 192 255 339 401 6.64e-14 73.6
Msa0386780 AT1G09530.6 50.000 64 31 1 192 255 339 401 6.64e-14 73.6
Msa0386780 AT1G35460.1 52.308 65 31 0 190 254 181 245 7.48e-14 71.6
Msa0386780 AT2G20180.8 41.758 91 47 2 162 252 255 339 7.90e-14 72.4
Msa0386780 AT4G02590.3 63.636 66 23 1 190 255 83 147 9.46e-14 70.9
Msa0386780 AT4G28815.2 56.897 58 24 1 193 250 71 127 1.07e-13 70.5
Msa0386780 AT1G03040.3 60.274 73 28 1 183 255 137 208 1.11e-13 72.0
Msa0386780 AT4G02590.2 63.636 66 23 1 190 255 146 210 1.25e-13 71.6
Msa0386780 AT4G02590.1 63.636 66 23 1 190 255 146 210 1.25e-13 71.6
Msa0386780 AT4G28815.1 56.897 58 24 1 193 250 147 203 3.55e-13 70.1
Msa0386780 AT4G28790.2 30.114 176 91 5 82 257 194 337 1.89e-12 68.2
Msa0386780 AT4G28800.2 52.459 61 28 1 193 253 264 323 4.10e-12 67.8
Msa0386780 AT2G46970.2 40.000 100 53 3 168 262 166 263 4.24e-12 67.8
Msa0386780 AT2G46970.3 40.000 100 53 3 168 262 175 272 4.55e-12 67.4
Msa0386780 AT2G46970.1 40.000 100 53 3 168 262 197 294 4.66e-12 67.8
Msa0386780 AT4G33880.1 41.935 93 51 2 164 254 238 329 5.34e-12 67.0
Msa0386780 AT4G00050.2 50.769 65 31 1 190 254 105 168 1.65e-11 65.1
Msa0386780 AT1G27740.1 39.423 104 58 2 151 254 132 230 2.10e-11 64.3
Msa0386780 AT2G43140.1 50.000 64 32 0 190 253 134 197 2.36e-11 63.5
Msa0386780 AT4G00050.1 50.769 65 31 1 190 254 207 270 2.97e-11 65.1
Msa0386780 AT4G00050.3 50.769 65 31 1 190 254 207 270 3.36e-11 64.7
Msa0386780 AT2G43140.2 50.000 64 32 0 190 253 231 294 3.50e-11 64.3
Msa0386780 AT4G36930.1 50.820 61 29 1 196 256 197 256 3.89e-11 64.7

Find 89 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACAGCAATTTGTTCCTTA+TGG 0.249421 3_1:-90544907 Msa0386780:CDS
AATTGAAGTTGTATAGGTTT+TGG 0.253509 3_1:+90544642 None:intergenic
CATAAGACCTTTCATGTATT+AGG 0.259760 3_1:-90546467 Msa0386780:five_prime_UTR
TCTCAATCTCAGTTATTTAC+AGG 0.262036 3_1:-90544590 Msa0386780:intron
TGTGACAGTGTTAGTGTCTT+TGG 0.270501 3_1:+90546338 None:intergenic
CTCATTCACTCTTCAATTGC+TGG 0.307759 3_1:-90545967 Msa0386780:CDS
AATTGAAGAGTGAATGAGTT+TGG 0.318103 3_1:+90545972 None:intergenic
TGACCATTCATTGGATTAAT+CGG 0.332530 3_1:-90542797 Msa0386780:three_prime_UTR
AAAGTTTGAGGAATGGATAT+AGG 0.336253 3_1:+90544826 None:intergenic
TTTGTTGTTGTTGGGATTCC+CGG 0.337455 3_1:+90545691 None:intergenic
GCTTCTTGTTGAATTGAAAC+AGG 0.337554 3_1:+90546360 None:intergenic
GATCAAAATTGAAGTTGTAT+AGG 0.339897 3_1:+90544636 None:intergenic
AAGTTTGAGGAATGGATATA+GGG 0.345771 3_1:+90544827 None:intergenic
ATTGAAGAGTGAATGAGTTT+GGG 0.357408 3_1:+90545973 None:intergenic
TGGAATGAACCCTACAGATA+TGG 0.359058 3_1:-90544872 Msa0386780:CDS
TTGAATACTACGACTAGTTC+CGG 0.373329 3_1:-90546258 Msa0386780:CDS
GAAAATCTGTGACCATTCAT+TGG 0.376630 3_1:-90542806 Msa0386780:three_prime_UTR
GAATCTTGATAAGAGGCATT+TGG 0.383503 3_1:+90542764 None:intergenic
CCAGGATGCAACAAAATTAC+AGG 0.386637 3_1:-90545395 Msa0386780:CDS
AAAGACAAGAGGATCAAAAT+AGG 0.388939 3_1:-90545740 Msa0386780:CDS
GTTGGGATTCCCGGTGATCT+TGG 0.389882 3_1:+90545700 None:intergenic
TATGTATGATGCAGGTTAGA+AGG 0.402202 3_1:-90545460 Msa0386780:intron
TTGCTTGTTGTTTAGGCTGT+TGG 0.409201 3_1:-90545776 Msa0386780:intron
CTTCTAAGTCCCATATCTGT+AGG 0.410368 3_1:+90544862 None:intergenic
TCACCTTCCCATGTTGTAGA+AGG 0.416145 3_1:+90544668 None:intergenic
GTATGTTTCAGCTTAGTAGA+TGG 0.421044 3_1:+90546394 None:intergenic
AGTATACAGAATTAATATAT+AGG 0.424074 3_1:+90542719 None:intergenic
AGCTATGGCTGTCGGTGGCT+TGG 0.431984 3_1:+90545570 None:intergenic
ACTCTCAGTTGCTAGATTCC+CGG 0.447140 3_1:+90546239 None:intergenic
CACGCACACACCTTGAGCTT+AGG 0.457558 3_1:+90545889 None:intergenic
TGCTCGAACATGAATGTAAT+CGG 0.461397 3_1:+90545601 None:intergenic
GAAGAATCAATAAAAGTTTG+AGG 0.465715 3_1:+90544814 None:intergenic
TGAATACTACGACTAGTTCC+GGG 0.477955 3_1:-90546257 Msa0386780:CDS
ATCAATAAAAGTTTGAGGAA+TGG 0.483827 3_1:+90544819 None:intergenic
AACAAAATTACAGGAAAAGC+TGG 0.485342 3_1:-90545386 Msa0386780:CDS
AATACATGAAAGGTCTTATG+AGG 0.486723 3_1:+90546470 None:intergenic
GAGTGAATGAGTTTGGGGTC+TGG 0.491043 3_1:+90545979 None:intergenic
GGAATGAACCCTACAGATAT+GGG 0.494720 3_1:-90544871 Msa0386780:CDS
ATGTATGATGCAGGTTAGAA+GGG 0.501649 3_1:-90545459 Msa0386780:intron
CTACAGATATGGGACTTAGA+AGG 0.505239 3_1:-90544861 Msa0386780:CDS
TTTGCATTTGCATCACAAGT+AGG 0.509857 3_1:+90544994 None:intergenic
AAGCCGATTAATCCAATGAA+TGG 0.510551 3_1:+90542794 None:intergenic
TTCTAAGTCCCATATCTGTA+GGG 0.511108 3_1:+90544863 None:intergenic
TCATTCACTCTTCAATTGCT+GGG 0.512372 3_1:-90545966 Msa0386780:CDS
TCAATATTGAAATCAAGCCT+TGG 0.519925 3_1:+90545166 None:intergenic
CCAGCATCTAATCCACCATA+AGG 0.520595 3_1:+90544892 None:intergenic
GAAGTAGTAACATCAAGAGT+TGG 0.521259 3_1:+90546039 None:intergenic
AACAGTGTTTGAAAGACAAA+GGG 0.521570 3_1:-90546202 Msa0386780:CDS
CAGCAATTTGTTCCTTATGG+TGG 0.522613 3_1:-90544904 Msa0386780:CDS
AGAAGATACTTCAAATTCAA+AGG 0.529575 3_1:-90545654 Msa0386780:CDS
TTACTCTTTCAGCTAAGCTA+TGG 0.530789 3_1:+90545555 None:intergenic
TTGGGGTCTGGAAGAAGAGA+TGG 0.536552 3_1:+90545991 None:intergenic
GGAAAGGAAAGCAAAGCAGT+AGG 0.537257 3_1:+90546435 None:intergenic
GGAAGAATACTTGAGAGGAA+AGG 0.544208 3_1:+90546419 None:intergenic
GGAGGAATAGAGTGAAACGT+AGG 0.547231 3_1:+90546491 None:intergenic
CTTCTTGTTGAATTGAAACA+GGG 0.549462 3_1:+90546361 None:intergenic
TTCAGCTAAGCTATGGCTGT+CGG 0.556309 3_1:+90545562 None:intergenic
TAACAGTGTTTGAAAGACAA+AGG 0.558772 3_1:-90546203 Msa0386780:CDS
CCTTATGGTGGATTAGATGC+TGG 0.561668 3_1:-90544892 Msa0386780:CDS
TATCTGCAAGATTTAGTACC+AGG 0.562856 3_1:-90545413 Msa0386780:CDS
TCAAGAGTTGGCATTTGAAG+AGG 0.565157 3_1:+90546051 None:intergenic
AATTATACCTTCTACAACAT+GGG 0.569534 3_1:-90544675 Msa0386780:CDS
GACGGCGAATCCAAGATCAC+CGG 0.574848 3_1:-90545710 Msa0386780:CDS
GTTTCAGCTTAGTAGATGGA+AGG 0.577443 3_1:+90546398 None:intergenic
TCATCATAATCCTAAGCTCA+AGG 0.584084 3_1:-90545899 Msa0386780:intron
GTAAATAACTGAGATTGAGA+AGG 0.584711 3_1:+90544593 None:intergenic
TAAATCAGCAGCAAGTGAAG+AGG 0.586756 3_1:+90546077 None:intergenic
TTCAAACACTGTTATGTCAG+AGG 0.587410 3_1:+90546212 None:intergenic
GGTGAATTGAACTGAAGATA+AGG 0.590017 3_1:+90544928 None:intergenic
TGGAAGGAAGAATACTTGAG+AGG 0.590986 3_1:+90546414 None:intergenic
AAATTATACCTTCTACAACA+TGG 0.591829 3_1:-90544676 Msa0386780:CDS
GAAAGGAAAGCAAAGCAGTA+GGG 0.594538 3_1:+90546436 None:intergenic
CAATGCACCTAATACATGAA+AGG 0.602189 3_1:+90546460 None:intergenic
AGCTAAGCTATGGCTGTCGG+TGG 0.605688 3_1:+90545565 None:intergenic
AATTAGCTACTGTTAATCCA+AGG 0.613412 3_1:-90545183 Msa0386780:CDS
ATACCTTCTACAACATGGGA+AGG 0.615789 3_1:-90544671 Msa0386780:CDS
ACATGAAAGGTCTTATGAGG+AGG 0.623217 3_1:+90546473 None:intergenic
ACGGCGAATCCAAGATCACC+GGG 0.628691 3_1:-90545709 Msa0386780:CDS
ATCAAAATAGGTGCTGAGGA+CGG 0.629527 3_1:-90545728 Msa0386780:CDS
TTGAAGAGTGAATGAGTTTG+GGG 0.630480 3_1:+90545974 None:intergenic
GACAAAGGGAAAGAATGAAG+TGG 0.633675 3_1:-90546188 Msa0386780:CDS
GAGGATCAAAATAGGTGCTG+AGG 0.635802 3_1:-90545732 Msa0386780:CDS
AGTTTGAGGAATGGATATAG+GGG 0.638076 3_1:+90544828 None:intergenic
AAGTTGAGAACAAAGACAAG+AGG 0.638388 3_1:-90545751 Msa0386780:CDS
ATTCATGTTCGAGCACGTCG+TGG 0.642577 3_1:-90545593 Msa0386780:CDS
TTGAGCTTAGGATTATGATG+AGG 0.647091 3_1:+90545901 None:intergenic
CCATAAGGAACAAATTGCTG+TGG 0.664587 3_1:+90544907 None:intergenic
TTCTTGTTGAATTGAAACAG+GGG 0.686215 3_1:+90546362 None:intergenic
AAGTGGCAACAACAACAACA+AGG 0.686848 3_1:-90546171 Msa0386780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTATTATTTTAATAAAA+AGG + chr3_1:90544994-90545013 None:intergenic 0.0%
!! AATAAATTAAGTGAATTAAT+TGG - chr3_1:90543326-90543345 Msa0386780:intron 10.0%
!! AGAAAAAAATATAAATAAAG+GGG + chr3_1:90545298-90545317 None:intergenic 10.0%
!! TAATAATTTGAGAAAATAAA+AGG - chr3_1:90545704-90545723 Msa0386780:CDS 10.0%
!! AATAATTTGAGAAAATAAAA+GGG - chr3_1:90545705-90545724 Msa0386780:CDS 10.0%
!! TTCACAAAATATAATTAATT+TGG + chr3_1:90545850-90545869 None:intergenic 10.0%
!!! TTATATTTTGTGAAATAAAT+TGG - chr3_1:90545856-90545875 Msa0386780:intron 10.0%
!! TAAGTAGTAATAATATACTT+TGG - chr3_1:90543623-90543642 Msa0386780:intron 15.0%
!!! TAACATAAACAAATTTGTTA+TGG + chr3_1:90543929-90543948 None:intergenic 15.0%
!! TTTCATTATTGAAAAACAAA+AGG + chr3_1:90544742-90544761 None:intergenic 15.0%
!! AGTTGTATTGAAAATTAAAA+TGG + chr3_1:90545196-90545215 None:intergenic 15.0%
!! AAAGTGAAATATATTGAATT+AGG + chr3_1:90545275-90545294 None:intergenic 15.0%
!! AAGTAAAAAACAATTTATGA+TGG - chr3_1:90545565-90545584 Msa0386780:CDS 15.0%
!! AGTATACAGAATTAATATAT+AGG + chr3_1:90546442-90546461 None:intergenic 15.0%
!! TAATTATATATGTATGATGC+AGG - chr3_1:90543690-90543709 Msa0386780:intron 20.0%
!!! ATAAACAAATTTGTTATGGA+TGG + chr3_1:90543925-90543944 None:intergenic 20.0%
!! ATTAAGCTAAAATACAGATT+AGG + chr3_1:90544076-90544095 None:intergenic 20.0%
!! AAAATTAAAACACTAGTAAC+GGG + chr3_1:90544411-90544430 None:intergenic 20.0%
!! CAAAATTAAAACACTAGTAA+CGG + chr3_1:90544412-90544431 None:intergenic 20.0%
!!! GTGTTTTAATTTTGTTGTAT+TGG - chr3_1:90544418-90544437 Msa0386780:intron 20.0%
!! ATTGTGGAAAAAAAAATTGA+GGG - chr3_1:90544913-90544932 Msa0386780:CDS 20.0%
!!! GACACTTTTTTTTAGTAAAT+GGG + chr3_1:90545159-90545178 None:intergenic 20.0%
!!! TAAAATGGCTCAATTATTTT+GGG + chr3_1:90545181-90545200 None:intergenic 20.0%
!!! TTAAAATGGCTCAATTATTT+TGG + chr3_1:90545182-90545201 None:intergenic 20.0%
!! TAGAGTTAGTATATTGTATT+GGG + chr3_1:90545228-90545247 None:intergenic 20.0%
!! TTAGAGTTAGTATATTGTAT+TGG + chr3_1:90545229-90545248 None:intergenic 20.0%
!! ATATACACTCAAAAACAATT+TGG - chr3_1:90545539-90545558 Msa0386780:intron 20.0%
!! TAAAAAACAATTTATGATGG+TGG - chr3_1:90545568-90545587 Msa0386780:CDS 20.0%
!! AAAAAACAATTTATGATGGT+GGG - chr3_1:90545569-90545588 Msa0386780:CDS 20.0%
!! CATTTGATAAAATAAATGGA+AGG + chr3_1:90545655-90545674 None:intergenic 20.0%
!!! CTTCCATTTATTTTATCAAA+TGG - chr3_1:90545653-90545672 Msa0386780:CDS 20.0%
!! TCTCCATTTGATAAAATAAA+TGG + chr3_1:90545659-90545678 None:intergenic 20.0%
!!! ATTTATTTTATCAAATGGAG+AGG - chr3_1:90545658-90545677 Msa0386780:CDS 20.0%
!!! AATGTAATTTTATTGCAACT+TGG - chr3_1:90545914-90545933 Msa0386780:CDS 20.0%
!! GAATGTTCTAATACTAAATA+TGG - chr3_1:90546223-90546242 Msa0386780:CDS 20.0%
!!! TAATTTGTTGCTTGTTGTTT+AGG - chr3_1:90543375-90543394 Msa0386780:intron 25.0%
! AGAAGATACTTCAAATTCAA+AGG - chr3_1:90543504-90543523 Msa0386780:intron 25.0%
! TGATGATCTATTTGAAAAAG+AGG - chr3_1:90544012-90544031 Msa0386780:intron 25.0%
!!! AAATGCAAATTTTCAAGCTA+TGG - chr3_1:90544178-90544197 Msa0386780:intron 25.0%
!!! AATGCAAATTTTCAAGCTAT+GGG - chr3_1:90544179-90544198 Msa0386780:intron 25.0%
! ATCAATAAAAGTTTGAGGAA+TGG + chr3_1:90544342-90544361 None:intergenic 25.0%
! GAAGAATCAATAAAAGTTTG+AGG + chr3_1:90544347-90544366 None:intergenic 25.0%
! AAAAATATTAACAGAGAGAG+TGG + chr3_1:90544386-90544405 None:intergenic 25.0%
! AAATTATACCTTCTACAACA+TGG - chr3_1:90544482-90544501 Msa0386780:intron 25.0%
! AATTATACCTTCTACAACAT+GGG - chr3_1:90544483-90544502 Msa0386780:intron 25.0%
!! AATTGAAGTTGTATAGGTTT+TGG + chr3_1:90544519-90544538 None:intergenic 25.0%
! GATCAAAATTGAAGTTGTAT+AGG + chr3_1:90544525-90544544 None:intergenic 25.0%
! GGTAGTTAAAATATTTGTCT+AGG - chr3_1:90544589-90544608 Msa0386780:intron 25.0%
!!! ATCTTTAAAGTAGAAAGTAG+AGG - chr3_1:90544640-90544659 Msa0386780:CDS 25.0%
!!! TCTTTAAAGTAGAAAGTAGA+GGG - chr3_1:90544641-90544660 Msa0386780:CDS 25.0%
! TATGCTTGATCAAAATGAAT+GGG + chr3_1:90544706-90544725 None:intergenic 25.0%
! TTATGCTTGATCAAAATGAA+TGG + chr3_1:90544707-90544726 None:intergenic 25.0%
! TGATCAAGCATAAAAATATC+TGG - chr3_1:90544714-90544733 Msa0386780:intron 25.0%
!! AGTCTTAAACATTTAAGATC+TGG - chr3_1:90544872-90544891 Msa0386780:CDS 25.0%
!! TTTAAGATCTGGTATCTAAT+AGG - chr3_1:90544883-90544902 Msa0386780:CDS 25.0%
!!! CTCAATTTTTTTTTCCACAA+TGG + chr3_1:90544914-90544933 None:intergenic 25.0%
! CATTGTGGAAAAAAAAATTG+AGG - chr3_1:90544912-90544931 Msa0386780:CDS 25.0%
! ATTAAGACCTCATTCTTAAA+TGG - chr3_1:90544958-90544977 Msa0386780:CDS 25.0%
! TTAAGACCTCATTCTTAAAT+GGG - chr3_1:90544959-90544978 Msa0386780:CDS 25.0%
!!! GGACACTTTTTTTTAGTAAA+TGG + chr3_1:90545160-90545179 None:intergenic 25.0%
! AGACACATAAAATAGATAGT+GGG + chr3_1:90545613-90545632 None:intergenic 25.0%
! TAGACACATAAAATAGATAG+TGG + chr3_1:90545614-90545633 None:intergenic 25.0%
! TTGAGAAAATAAAAGGGATT+TGG - chr3_1:90545711-90545730 Msa0386780:CDS 25.0%
! TGAGAAAATAAAAGGGATTT+GGG - chr3_1:90545712-90545731 Msa0386780:CDS 25.0%
!!! TTTTAGATTAAAGGCTTGTT+CGG + chr3_1:90545771-90545790 None:intergenic 25.0%
!! GCAATGACATTTTAGATTAA+AGG + chr3_1:90545780-90545799 None:intergenic 25.0%
! TGTGAAATAAATTGGATAAG+AGG - chr3_1:90545864-90545883 Msa0386780:intron 25.0%
! TTATTGCAACTTGGATTAAA+AGG - chr3_1:90545923-90545942 Msa0386780:CDS 25.0%
!!! ATATAGTGGATTACAACTTA+GGG - chr3_1:90545984-90546003 Msa0386780:CDS 25.0%
!!! TTTTAAGTGGTCTCTAAAAT+GGG + chr3_1:90546037-90546056 None:intergenic 25.0%
!!! ATTTTAAGTGGTCTCTAAAA+TGG + chr3_1:90546038-90546057 None:intergenic 25.0%
!! TCATTTTCTCTGATTTTAAG+TGG + chr3_1:90546050-90546069 None:intergenic 25.0%
! ATAGAAAAGAAAGAGAGAAA+GGG - chr3_1:90546116-90546135 Msa0386780:CDS 25.0%
! AGTGATATGATTTGAAAGAT+AGG - chr3_1:90546156-90546175 Msa0386780:CDS 25.0%
! GAAAAAAGAATCTTGATAAG+AGG + chr3_1:90546404-90546423 None:intergenic 25.0%
! AATACATGAAAGGTCTTATG+AGG + chr3_1:90542691-90542710 None:intergenic 30.0%
CATAAGACCTTTCATGTATT+AGG - chr3_1:90542691-90542710 Msa0386780:three_prime_UTR 30.0%
TTCTTGTTGAATTGAAACAG+GGG + chr3_1:90542799-90542818 None:intergenic 30.0%
CTTCTTGTTGAATTGAAACA+GGG + chr3_1:90542800-90542819 None:intergenic 30.0%
TAACAGTGTTTGAAAGACAA+AGG - chr3_1:90542955-90542974 Msa0386780:intron 30.0%
AACAGTGTTTGAAAGACAAA+GGG - chr3_1:90542956-90542975 Msa0386780:intron 30.0%
ATTGAAGAGTGAATGAGTTT+GGG + chr3_1:90543188-90543207 None:intergenic 30.0%
AATTGAAGAGTGAATGAGTT+TGG + chr3_1:90543189-90543208 None:intergenic 30.0%
AAAGACAAGAGGATCAAAAT+AGG - chr3_1:90543418-90543437 Msa0386780:intron 30.0%
!!! CAGTTTTCTTTGTTGTTGTT+GGG + chr3_1:90543478-90543497 None:intergenic 30.0%
!!! ACAGTTTTCTTTGTTGTTGT+TGG + chr3_1:90543479-90543498 None:intergenic 30.0%
AACAAAATTACAGGAAAAGC+TGG - chr3_1:90543772-90543791 Msa0386780:intron 30.0%
CATAGATAGATCAATGTGAT+AGG + chr3_1:90543900-90543919 None:intergenic 30.0%
CTAATTTCATTGACAAGAAC+TGG + chr3_1:90543961-90543980 None:intergenic 30.0%
AATTAGCTACTGTTAATCCA+AGG - chr3_1:90543975-90543994 Msa0386780:intron 30.0%
TCAATATTGAAATCAAGCCT+TGG + chr3_1:90543995-90544014 None:intergenic 30.0%
!! TTTGTGTTGATTCCTTACAT+AGG - chr3_1:90544136-90544155 Msa0386780:intron 30.0%
AAGTTTGAGGAATGGATATA+GGG + chr3_1:90544334-90544353 None:intergenic 30.0%
AAAGTTTGAGGAATGGATAT+AGG + chr3_1:90544335-90544354 None:intergenic 30.0%
!! ACTTCAATTTTGATCAAGCA+AGG - chr3_1:90544530-90544549 Msa0386780:intron 30.0%
!! CTTCAATTTTGATCAAGCAA+GGG - chr3_1:90544531-90544550 Msa0386780:intron 30.0%
GTAAATAACTGAGATTGAGA+AGG + chr3_1:90544568-90544587 None:intergenic 30.0%
TCTCAATCTCAGTTATTTAC+AGG - chr3_1:90544568-90544587 Msa0386780:intron 30.0%
ATTCAATTCAATTATGCAGC+TGG - chr3_1:90544799-90544818 Msa0386780:intron 30.0%
CTCTAACAAAAGGTCTAATT+GGG + chr3_1:90545077-90545096 None:intergenic 30.0%
! CAATTAGACCTTTTGTTAGA+GGG - chr3_1:90545076-90545095 Msa0386780:intron 30.0%
AGTAAATGGGTCAGATATTT+CGG + chr3_1:90545146-90545165 None:intergenic 30.0%
TAAAAAGTGATGTGTCAATG+TGG - chr3_1:90545388-90545407 Msa0386780:CDS 30.0%
AAAAAGTGATGTGTCAATGT+GGG - chr3_1:90545389-90545408 Msa0386780:CDS 30.0%
!! TCATCTTTGAGGTCTTAAAT+GGG + chr3_1:90545416-90545435 None:intergenic 30.0%
GAAATGGAAAGGATACAAAA+TGG + chr3_1:90545506-90545525 None:intergenic 30.0%
ATAAATGGAAGGACACAATT+TGG + chr3_1:90545644-90545663 None:intergenic 30.0%
TTCTCAAATTATTACCGTGT+TGG + chr3_1:90545698-90545717 None:intergenic 30.0%
!! GATTAAAAGGTTTAGCTTTG+AGG - chr3_1:90545936-90545955 Msa0386780:CDS 30.0%
! CGTCAATCATTTTCATATAG+TGG - chr3_1:90545970-90545989 Msa0386780:CDS 30.0%
!! CATATAGTGGATTACAACTT+AGG - chr3_1:90545983-90546002 Msa0386780:CDS 30.0%
TAAAATGGGAGATTGTGAAA+TGG + chr3_1:90546023-90546042 None:intergenic 30.0%
GAGAAAATGATAGTTTCACA+AGG - chr3_1:90546060-90546079 Msa0386780:CDS 30.0%
GATAGAAAAGAAAGAGAGAA+AGG - chr3_1:90546115-90546134 Msa0386780:CDS 30.0%
!! TCTAAAAGTGTTGTTTGACA+TGG - chr3_1:90546281-90546300 Msa0386780:exon 30.0%
TGACCATTCATTGGATTAAT+CGG - chr3_1:90546361-90546380 Msa0386780:five_prime_UTR 30.0%
CAATGCACCTAATACATGAA+AGG + chr3_1:90542701-90542720 None:intergenic 35.0%
GTATGTTTCAGCTTAGTAGA+TGG + chr3_1:90542767-90542786 None:intergenic 35.0%
GCTTCTTGTTGAATTGAAAC+AGG + chr3_1:90542801-90542820 None:intergenic 35.0%
! TTGAATACTACGACTAGTTC+CGG - chr3_1:90542900-90542919 Msa0386780:intron 35.0%
TTCAAACACTGTTATGTCAG+AGG + chr3_1:90542949-90542968 None:intergenic 35.0%
GAAGTAGTAACATCAAGAGT+TGG + chr3_1:90543122-90543141 None:intergenic 35.0%
TTGAAGAGTGAATGAGTTTG+GGG + chr3_1:90543187-90543206 None:intergenic 35.0%
TCATTCACTCTTCAATTGCT+GGG - chr3_1:90543192-90543211 Msa0386780:intron 35.0%
! GGATTATGATGAGGTTTTTC+AGG + chr3_1:90543251-90543270 None:intergenic 35.0%
TTGAGCTTAGGATTATGATG+AGG + chr3_1:90543260-90543279 None:intergenic 35.0%
TCATCATAATCCTAAGCTCA+AGG - chr3_1:90543259-90543278 Msa0386780:intron 35.0%
AAGTTGAGAACAAAGACAAG+AGG - chr3_1:90543407-90543426 Msa0386780:intron 35.0%
TGCTCGAACATGAATGTAAT+CGG + chr3_1:90543560-90543579 None:intergenic 35.0%
TTACTCTTTCAGCTAAGCTA+TGG + chr3_1:90543606-90543625 None:intergenic 35.0%
TATGTATGATGCAGGTTAGA+AGG - chr3_1:90543698-90543717 Msa0386780:intron 35.0%
ATGTATGATGCAGGTTAGAA+GGG - chr3_1:90543699-90543718 Msa0386780:intron 35.0%
TATCTGCAAGATTTAGTACC+AGG - chr3_1:90543745-90543764 Msa0386780:intron 35.0%
GTCTCTTCAAAAACAAGTTG+AGG - chr3_1:90543825-90543844 Msa0386780:intron 35.0%
AAGTAGGAAACACCTATGTA+AGG + chr3_1:90544151-90544170 None:intergenic 35.0%
TTTGCATTTGCATCACAAGT+AGG + chr3_1:90544167-90544186 None:intergenic 35.0%
GGTGAATTGAACTGAAGATA+AGG + chr3_1:90544233-90544252 None:intergenic 35.0%
TTCTAAGTCCCATATCTGTA+GGG + chr3_1:90544298-90544317 None:intergenic 35.0%
AGTTTGAGGAATGGATATAG+GGG + chr3_1:90544333-90544352 None:intergenic 35.0%
! GATTCTTCTTGTTTCTCTGT+AGG - chr3_1:90544359-90544378 Msa0386780:intron 35.0%
! TGAGTGGGTTTAATAGATGA+TGG - chr3_1:90544669-90544688 Msa0386780:CDS 35.0%
TCTAATAGGTACTTCCATTG+TGG - chr3_1:90544897-90544916 Msa0386780:CDS 35.0%
TGTAGACCCATTTAAGAATG+AGG + chr3_1:90544968-90544987 None:intergenic 35.0%
CCTCTAACAAAAGGTCTAAT+TGG + chr3_1:90545078-90545097 None:intergenic 35.0%
! CCAATTAGACCTTTTGTTAG+AGG - chr3_1:90545075-90545094 Msa0386780:intron 35.0%
GTAAATGGGTCAGATATTTC+GGG + chr3_1:90545145-90545164 None:intergenic 35.0%
ATCTGTGTGAAAAACCAAAC+TGG - chr3_1:90545320-90545339 Msa0386780:intron 35.0%
!! CAAACTGGCTCAGATATTTT+GGG - chr3_1:90545335-90545354 Msa0386780:CDS 35.0%
!! CTCATCTTTGAGGTCTTAAA+TGG + chr3_1:90545417-90545436 None:intergenic 35.0%
ATGATGTCACATATCCACAA+TGG + chr3_1:90545445-90545464 None:intergenic 35.0%
ATCCTTTCCATTTCTCCATT+TGG - chr3_1:90545512-90545531 Msa0386780:intron 35.0%
TATCTCTCCAAATGGAGAAA+TGG + chr3_1:90545522-90545541 None:intergenic 35.0%
TGAGTGTATATCTCTCCAAA+TGG + chr3_1:90545530-90545549 None:intergenic 35.0%
! AATTATTACCGTGTTGGTGT+CGG + chr3_1:90545692-90545711 None:intergenic 35.0%
AAAATGATTGACGCTATTGC+TGG + chr3_1:90545963-90545982 None:intergenic 35.0%
! TTACAACTTAGGGTTGTTTC+TGG - chr3_1:90545994-90546013 Msa0386780:CDS 35.0%
! ATGAATGGTCACAGATTTTC+TGG + chr3_1:90546352-90546371 None:intergenic 35.0%
GAAAATCTGTGACCATTCAT+TGG - chr3_1:90546352-90546371 Msa0386780:five_prime_UTR 35.0%
AAGCCGATTAATCCAATGAA+TGG + chr3_1:90546367-90546386 None:intergenic 35.0%
!! GAATCTTGATAAGAGGCATT+TGG + chr3_1:90546397-90546416 None:intergenic 35.0%
! ACATGAAAGGTCTTATGAGG+AGG + chr3_1:90542688-90542707 None:intergenic 40.0%
GAAAGGAAAGCAAAGCAGTA+GGG + chr3_1:90542725-90542744 None:intergenic 40.0%
GGAAGAATACTTGAGAGGAA+AGG + chr3_1:90542742-90542761 None:intergenic 40.0%
TGGAAGGAAGAATACTTGAG+AGG + chr3_1:90542747-90542766 None:intergenic 40.0%
GTTTCAGCTTAGTAGATGGA+AGG + chr3_1:90542763-90542782 None:intergenic 40.0%
TGTGACAGTGTTAGTGTCTT+TGG + chr3_1:90542823-90542842 None:intergenic 40.0%
! TGAATACTACGACTAGTTCC+GGG - chr3_1:90542901-90542920 Msa0386780:intron 40.0%
GACAAAGGGAAAGAATGAAG+TGG - chr3_1:90542970-90542989 Msa0386780:intron 40.0%
AAGTGGCAACAACAACAACA+AGG - chr3_1:90542987-90543006 Msa0386780:intron 40.0%
TAAATCAGCAGCAAGTGAAG+AGG + chr3_1:90543084-90543103 None:intergenic 40.0%
TCAAGAGTTGGCATTTGAAG+AGG + chr3_1:90543110-90543129 None:intergenic 40.0%
CTCATTCACTCTTCAATTGC+TGG - chr3_1:90543191-90543210 Msa0386780:intron 40.0%
!! TTGCTTGTTGTTTAGGCTGT+TGG - chr3_1:90543382-90543401 Msa0386780:intron 40.0%
!! ATCAAAATAGGTGCTGAGGA+CGG - chr3_1:90543430-90543449 Msa0386780:intron 40.0%
!! TTTGTTGTTGTTGGGATTCC+CGG + chr3_1:90543470-90543489 None:intergenic 40.0%
! CCTGTAATTTTGTTGCATCC+TGG + chr3_1:90543766-90543785 None:intergenic 40.0%
CCAGGATGCAACAAAATTAC+AGG - chr3_1:90543763-90543782 Msa0386780:intron 40.0%
CCATAAGGAACAAATTGCTG+TGG + chr3_1:90544254-90544273 None:intergenic 40.0%
! CCACAGCAATTTGTTCCTTA+TGG - chr3_1:90544251-90544270 Msa0386780:intron 40.0%
! CAGCAATTTGTTCCTTATGG+TGG - chr3_1:90544254-90544273 Msa0386780:intron 40.0%
TGGAATGAACCCTACAGATA+TGG - chr3_1:90544286-90544305 Msa0386780:intron 40.0%
GGAATGAACCCTACAGATAT+GGG - chr3_1:90544287-90544306 Msa0386780:intron 40.0%
CTTCTAAGTCCCATATCTGT+AGG + chr3_1:90544299-90544318 None:intergenic 40.0%
CTACAGATATGGGACTTAGA+AGG - chr3_1:90544297-90544316 Msa0386780:intron 40.0%
ATACCTTCTACAACATGGGA+AGG - chr3_1:90544487-90544506 Msa0386780:intron 40.0%
AAAGTAGAGGGAAAAGTGAG+TGG - chr3_1:90544653-90544672 Msa0386780:CDS 40.0%
AAGTAGAGGGAAAAGTGAGT+GGG - chr3_1:90544654-90544673 Msa0386780:CDS 40.0%
! TGTTTAAGACTCTCCCATTG+TGG + chr3_1:90544863-90544882 None:intergenic 40.0%
TGAGGGTCTTAAAAGATGCA+AGG - chr3_1:90544930-90544949 Msa0386780:CDS 40.0%
AATGGAGACCCTCTAACAAA+AGG + chr3_1:90545087-90545106 None:intergenic 40.0%
! TTTTGTTAGAGGGTCTCCAT+TGG - chr3_1:90545086-90545105 Msa0386780:intron 40.0%
CCAAAATATCTGAGCCAGTT+TGG + chr3_1:90545337-90545356 None:intergenic 40.0%
!! CCAAACTGGCTCAGATATTT+TGG - chr3_1:90545334-90545353 Msa0386780:CDS 40.0%
AATGGAGACTCTCATCTTTG+AGG + chr3_1:90545427-90545446 None:intergenic 40.0%
AAAGATGAGAGTCTCCATTG+TGG - chr3_1:90545428-90545447 Msa0386780:CDS 40.0%
!! AGAAGATATTGACTCGTCGT+CGG + chr3_1:90545483-90545502 None:intergenic 40.0%
CTCCAAATGGAGAAATGGAA+AGG + chr3_1:90545517-90545536 None:intergenic 40.0%
AGTGGGTCATATCACTAAGT+GGG + chr3_1:90545596-90545615 None:intergenic 40.0%
! TAGTGGGTCATATCACTAAG+TGG + chr3_1:90545597-90545616 None:intergenic 40.0%
! ATTATTACCGTGTTGGTGTC+GGG + chr3_1:90545691-90545710 None:intergenic 40.0%
TTTCACAAGGCTTACGCTTA+TGG - chr3_1:90546073-90546092 Msa0386780:CDS 40.0%
TTCACAAGGCTTACGCTTAT+GGG - chr3_1:90546074-90546093 Msa0386780:CDS 40.0%
AAAGGGACATGTACTATGCT+AGG - chr3_1:90546133-90546152 Msa0386780:CDS 40.0%
GGAAAGGAAAGCAAAGCAGT+AGG + chr3_1:90542726-90542745 None:intergenic 45.0%
ACTCTCAGTTGCTAGATTCC+CGG + chr3_1:90542922-90542941 None:intergenic 45.0%
! GAGGATCAAAATAGGTGCTG+AGG - chr3_1:90543426-90543445 Msa0386780:intron 45.0%
TTCAGCTAAGCTATGGCTGT+CGG + chr3_1:90543599-90543618 None:intergenic 45.0%
CCAGCATCTAATCCACCATA+AGG + chr3_1:90544269-90544288 None:intergenic 45.0%
!! CCTTATGGTGGATTAGATGC+TGG - chr3_1:90544266-90544285 Msa0386780:intron 45.0%
TCACCTTCCCATGTTGTAGA+AGG + chr3_1:90544493-90544512 None:intergenic 45.0%
! TGGATGCTATAGTGGGAAAG+TGG + chr3_1:90544843-90544862 None:intergenic 45.0%
TCCCACTATAGCATCCACAA+TGG - chr3_1:90544846-90544865 Msa0386780:CDS 45.0%
CCCATTGTGGATGCTATAGT+GGG + chr3_1:90544850-90544869 None:intergenic 45.0%
CCCACTATAGCATCCACAAT+GGG - chr3_1:90544847-90544866 Msa0386780:CDS 45.0%
TCCCATTGTGGATGCTATAG+TGG + chr3_1:90544851-90544870 None:intergenic 45.0%
TAGGTACTCAACCACTCCAA+TGG + chr3_1:90545105-90545124 None:intergenic 45.0%
GGAGTGGTTGAGTACCTATT+AGG - chr3_1:90545107-90545126 Msa0386780:intron 45.0%
ATGGGTCAGATATTTCGGGA+CGG + chr3_1:90545141-90545160 None:intergenic 45.0%
!! CTGGCTCAGATATTTTGGGA+CGG - chr3_1:90545339-90545358 Msa0386780:CDS 45.0%
!!! CTCAGATATTTTGGGACGGA+GGG - chr3_1:90545343-90545362 Msa0386780:CDS 45.0%
TTGGGTCAGTGTGTTTGTGT+CGG - chr3_1:90545730-90545749 Msa0386780:CDS 45.0%
GCTTGTTCGGCGACATATAT+CGG + chr3_1:90545758-90545777 None:intergenic 45.0%
!! GTGTTGTTTGACATGGATGC+AGG - chr3_1:90546288-90546307 Msa0386780:exon 45.0%
!!! AAGTTTTTTTTTTTTTTAAA+TGG - chr3_1:90544765-90544784 Msa0386780:intron 5.0%
!! TATTAAATAAATAATATTAG+TGG - chr3_1:90545049-90545068 Msa0386780:intron 5.0%
!! AAGAAAAAAATATAAATAAA+GGG + chr3_1:90545299-90545318 None:intergenic 5.0%
!! TAAGAAAAAAATATAAATAA+AGG + chr3_1:90545300-90545319 None:intergenic 5.0%
!!! ATATGATTTTATTTATATTA+AGG + chr3_1:90546468-90546487 None:intergenic 5.0%
TTGGGGTCTGGAAGAAGAGA+TGG + chr3_1:90543170-90543189 None:intergenic 50.0%
! GAGTGAATGAGTTTGGGGTC+TGG + chr3_1:90543182-90543201 None:intergenic 50.0%
ATTCATGTTCGAGCACGTCG+TGG - chr3_1:90543565-90543584 Msa0386780:intron 50.0%
TTAGAGGGTCTCCATTGGAG+TGG - chr3_1:90545091-90545110 Msa0386780:intron 50.0%
GTCAGATATTTCGGGACGGA+GGG + chr3_1:90545137-90545156 None:intergenic 50.0%
!!! GCTCAGATATTTTGGGACGG+AGG - chr3_1:90545342-90545361 Msa0386780:CDS 50.0%
ATCCTAACCCGACACCAACA+CGG - chr3_1:90545681-90545700 Msa0386780:CDS 50.0%
CACGCACACACCTTGAGCTT+AGG + chr3_1:90543272-90543291 None:intergenic 55.0%
GACGGCGAATCCAAGATCAC+CGG - chr3_1:90543448-90543467 Msa0386780:intron 55.0%
ACGGCGAATCCAAGATCACC+GGG - chr3_1:90543449-90543468 Msa0386780:intron 55.0%
GTTGGGATTCCCGGTGATCT+TGG + chr3_1:90543461-90543480 None:intergenic 55.0%
AGCTAAGCTATGGCTGTCGG+TGG + chr3_1:90543596-90543615 None:intergenic 55.0%
!! GGACGGAGGGAGTACCTAAT+AGG + chr3_1:90545124-90545143 None:intergenic 55.0%
GGTCAGATATTTCGGGACGG+AGG + chr3_1:90545138-90545157 None:intergenic 55.0%
!! TACCGTGTTGGTGTCGGGTT+AGG + chr3_1:90545686-90545705 None:intergenic 55.0%
AGCTATGGCTGTCGGTGGCT+TGG + chr3_1:90543591-90543610 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 90542668 90546512 90542668 ID=Msa0386780;Name=Msa0386780
chr3_1 mRNA 90542668 90546512 90542668 ID=Msa0386780-mRNA-1;Parent=Msa0386780;Name=Msa0386780-mRNA-1;_AED=0.09;_eAED=0.09;_QI=220|1|1|1|1|1|7|165|397
chr3_1 exon 90542668 90542870 90542668 ID=Msa0386780-mRNA-1:exon:25059;Parent=Msa0386780-mRNA-1
chr3_1 exon 90544591 90544702 90544591 ID=Msa0386780-mRNA-1:exon:25058;Parent=Msa0386780-mRNA-1
chr3_1 exon 90544804 90545022 90544804 ID=Msa0386780-mRNA-1:exon:25057;Parent=Msa0386780-mRNA-1
chr3_1 exon 90545147 90545218 90545147 ID=Msa0386780-mRNA-1:exon:25056;Parent=Msa0386780-mRNA-1
chr3_1 exon 90545334 90545468 90545334 ID=Msa0386780-mRNA-1:exon:25055;Parent=Msa0386780-mRNA-1
chr3_1 exon 90545559 90545783 90545559 ID=Msa0386780-mRNA-1:exon:25054;Parent=Msa0386780-mRNA-1
chr3_1 exon 90545900 90546512 90545900 ID=Msa0386780-mRNA-1:exon:25053;Parent=Msa0386780-mRNA-1
chr3_1 five_prime_UTR 90546293 90546512 90546293 ID=Msa0386780-mRNA-1:five_prime_utr;Parent=Msa0386780-mRNA-1
chr3_1 CDS 90545900 90546292 90545900 ID=Msa0386780-mRNA-1:cds;Parent=Msa0386780-mRNA-1
chr3_1 CDS 90545559 90545783 90545559 ID=Msa0386780-mRNA-1:cds;Parent=Msa0386780-mRNA-1
chr3_1 CDS 90545334 90545468 90545334 ID=Msa0386780-mRNA-1:cds;Parent=Msa0386780-mRNA-1
chr3_1 CDS 90545147 90545218 90545147 ID=Msa0386780-mRNA-1:cds;Parent=Msa0386780-mRNA-1
chr3_1 CDS 90544804 90545022 90544804 ID=Msa0386780-mRNA-1:cds;Parent=Msa0386780-mRNA-1
chr3_1 CDS 90544591 90544702 90544591 ID=Msa0386780-mRNA-1:cds;Parent=Msa0386780-mRNA-1
chr3_1 CDS 90542833 90542870 90542833 ID=Msa0386780-mRNA-1:cds;Parent=Msa0386780-mRNA-1
chr3_1 three_prime_UTR 90542668 90542832 90542668 ID=Msa0386780-mRNA-1:three_prime_utr;Parent=Msa0386780-mRNA-1
Gene Sequence

>Msa0386780

ATGTTGCACTGTTTGAATACTACGACTAGTTCCGGGAATCTAGCAACTGAGAGTTGCTCCTCTGACATAACAGTGTTTGAAAGACAAAGGGAAAGAATGAAGTGGCAACAACAACAACAAGGTTACTTCAACGCTGCTGCTATGTTCTGTTCTTCTCTGCAACAACAACAACAACAAGTTGACAATTCTGAAGCCTCTTCACTTGCTGCTGATTTACTGCCTCTTCAAATGCCAACTCTTGATGTTACTACTTCTGCTATTTCAAGAACTTTCAGCTGTCCATCTCTTCTTCCAGACCCCAAACTCATTCACTCTTCAATTGCTGGGAAAGACAAACACAATTCTTCTAAGAAAAGAAAACCTGAAAAACCTCATCATAATCCTAAGCTCAAGGCTGTTGGTGAAGTTGAGAACAAAGACAAGAGGATCAAAATAGGTGCTGAGGACGGCGAATCCAAGATCACCGGGAATCCCAACAACAACAAAGAAAACTGTGTAGCAGAAGATACTTCAAATTCAAAGGAAAATTCAAAAGTTTCTGATGTTCAAAAGACCGATTACATTCATGTTCGAGCACGTCGTGGCCAAGCCACCGACAGCCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAGATTAGTGAGAGAATGAAGTATCTGCAAGATTTAGTACCAGGATGCAACAAAATTACAGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAGTCTCTTCAAAAACAAGTTGAGTTCTTGTCAATGAAATTAGCTACTGTTAATCCAAGGCTTGATTTCAATATTGATGATCTATTTGAAAAAGAGGTGTTTCCTACTTGTGATGCAAATGCAAATTTTCAAGCTATGGGAATGTCAACAGAATTGAATAGTAACAATCCTTATCTTCAGTTCAATTCACCACAGCAATTTGTTCCTTATGGTGGATTAGATGCTGGAATGAACCCTACAGATATGGGACTTAGAAGGAGCATAAGTGCCCCTATATCCATTCCTCAAACTTTTATTGATTCTTCTTGTTTCTCTCAGCAAATTATACCTTCTACAACATGGGAAGGTGATTTCCAAAACCTATACAACTTCAATTTTGATCAAGCAAGGGCAACATCTTTTCCTTCTCAATCTCAGTTATTTACAGGTCTTGTTGAAGCAAACAATCTAAAGATCGAGATGTAG
Protein sequence

>Msa0386780

MLHCLNTTTSSGNLATESCSSDITVFERQRERMKWQQQQQGYFNAAAMFCSSLQQQQQQVDNSEASSLAADLLPLQMPTLDVTTSAISRTFSCPSLLPDPKLIHSSIAGKDKHNSSKKRKPEKPHHNPKLKAVGEVENKDKRIKIGAEDGESKITGNPNNNKENCVAEDTSNSKENSKVSDVQKTDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQKQVEFLSMKLATVNPRLDFNIDDLFEKEVFPTCDANANFQAMGMSTELNSNNPYLQFNSPQQFVPYGGLDAGMNPTDMGLRRSISAPISIPQTFIDSSCFSQQIIPSTTWEGDFQNLYNFNFDQARATSFPSQSQLFTGLVEANNLKIEM*