AlfalfaGEDB | Msa0389850

M. sativa cultivar zhongmu-4 / Msa0389850

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF13947.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389850	XP_013444529.2	88.152	633	18	3	19	594	26	658	0.0	1121

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389850	sp\|Q8S8N4\|Y2685_ARATH	46.709	623	231	14	41	594	41	631	1.71e-176	517

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389850	A0A396GHI8	88.152	633	18	3	19	594	26	658	0.0	1121

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0389850	Msa1175610	0.946218	7.020673e-105	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389850	MtrunA17_Chr8g0345791	88.152	633	18	3	19	594	26	658	0.0	1121
Msa0389850	MtrunA17_Chr8g0374031	28.099	605	329	21	36	558	33	613	6.67e-50	184
Msa0389850	MtrunA17_Chr3g0141261	28.571	609	322	24	39	556	30	616	8.29e-50	184
Msa0389850	MtrunA17_Chr5g0403051	29.577	426	207	12	206	560	206	609	2.88e-42	162
Msa0389850	MtrunA17_Chr1g0209431	33.333	366	200	12	238	573	274	625	1.04e-41	160
Msa0389850	MtrunA17_Chr1g0209391	29.563	389	232	10	231	593	243	615	8.82e-40	154
Msa0389850	MtrunA17_Chr6g0467631	30.946	349	203	9	231	553	286	622	3.64e-39	152
Msa0389850	MtrunA17_Chr8g0376061	33.673	294	166	7	281	553	323	608	6.78e-39	151
Msa0389850	MtrunA17_Chr3g0125451	30.370	405	206	13	206	553	305	690	8.06e-39	152
Msa0389850	MtrunA17_Chr6g0467601	30.484	351	206	8	234	553	83	426	1.53e-38	148

Showing 1 to 10 of 502 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0389850	AT2G46850.1	46.709	623	231	14	41	594	41	631	1.74e-177	517
Msa0389850	AT2G23450.2	29.276	608	308	23	39	556	48	623	3.41e-48	179
Msa0389850	AT2G23450.1	29.276	608	308	23	39	556	48	623	3.41e-48	179
Msa0389850	AT5G66790.1	29.909	438	232	15	191	567	183	606	3.96e-40	155
Msa0389850	AT1G21210.1	33.333	303	161	10	280	556	396	683	9.40e-38	149
Msa0389850	AT1G21270.1	32.781	302	164	9	280	556	390	677	5.03e-36	144
Msa0389850	AT1G21240.1	32.013	303	175	8	280	561	401	693	5.72e-36	144
Msa0389850	AT1G25390.1	30.871	379	218	12	216	559	201	570	7.31e-36	143
Msa0389850	AT1G25390.2	30.871	379	218	12	216	559	201	570	7.31e-36	143
Msa0389850	AT1G17910.1	28.093	388	213	12	220	562	368	734	1.34e-35	143

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 82 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTAGTTGCATCTTCCT+AGG	0.491087	3_2:-374530	Msa0389850:CDS
AACTTGGTTTACATTGGTAT+AGG	0.418779	3_2:-374637	Msa0389850:CDS
AAGATAGAATAGTGTAACTA+AGG	0.387599	3_2:+375078	None:intergenic
AAGGAGGCAACAATAAGAAC+TGG	0.449941	3_2:+375097	None:intergenic
AAGGATATTCATAAACCACT+AGG	0.584214	3_2:+374714	None:intergenic
AATAACAGTACAATGTTCGC+GGG	0.608169	3_2:-374899	Msa0389850:CDS
AATGCTACAGCAGTTAAAGG+TGG	0.685014	3_2:-376137	Msa0389850:CDS
AATTCATGCAATGAAACATG+TGG	0.592430	3_2:-376725	Msa0389850:CDS
AATTGGAGTTTGGTATTCCT+AGG	0.451627	3_2:-376202	Msa0389850:CDS
ACAAAAGAGAGTGTTGATGG+AGG	0.606846	3_2:-374140	Msa0389850:CDS

Showing 1 to 10 of 82 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATTCATGCAATGAAACATG+TGG	-	chr3_2:374154-374173	Msa0389850:CDS	30.0%
TTGTTGATGTAGAAAGGAAA+TGG	+	chr3_2:374193-374212	None:intergenic	30.0%
TTTGATGGAAGAAACTACTT+TGG	-	chr3_2:374400-374419	Msa0389850:CDS	30.0%
CATATACTATGATCAGAAAG+TGG	+	chr3_2:374556-374575	None:intergenic	30.0%
CACTTTCTGATCATAGTATA+TGG	-	chr3_2:374554-374573	Msa0389850:CDS	30.0%
GATCATAGTATATGGCATAT+TGG	-	chr3_2:374562-374581	Msa0389850:CDS	30.0%
GTTCTTATTCAGGTAAAAGA+GGG	-	chr3_2:374650-374669	Msa0389850:CDS	30.0%
TTCTTATTCAGGTAAAAGAG+GGG	-	chr3_2:374651-374670	Msa0389850:CDS	30.0%
TCATATAAGTGCTTATGCAT+AGG	-	chr3_2:374934-374953	Msa0389850:CDS	30.0%
TATACATGTCAATGACTGTT+TGG	+	chr3_2:375100-375119	None:intergenic	30.0%

Showing 1 to 10 of 163 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	374046	376855	374046	ID=Msa0389850;Name=Msa0389850
chr3_2	mRNA	374046	376855	374046	ID=Msa0389850-mRNA-1;Parent=Msa0389850;Name=Msa0389850-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0\|0\|1\|0\|0.25\|4\|0\|594
chr3_2	exon	376615	376855	376615	ID=Msa0389850-mRNA-1:exon:34;Parent=Msa0389850-mRNA-1
chr3_2	exon	376333	376578	376333	ID=Msa0389850-mRNA-1:exon:33;Parent=Msa0389850-mRNA-1
chr3_2	exon	376099	376311	376099	ID=Msa0389850-mRNA-1:exon:32;Parent=Msa0389850-mRNA-1
chr3_2	exon	374046	375130	374046	ID=Msa0389850-mRNA-1:exon:31;Parent=Msa0389850-mRNA-1
chr3_2	CDS	376615	376855	376615	ID=Msa0389850-mRNA-1:cds;Parent=Msa0389850-mRNA-1
chr3_2	CDS	376333	376578	376333	ID=Msa0389850-mRNA-1:cds;Parent=Msa0389850-mRNA-1
chr3_2	CDS	376099	376311	376099	ID=Msa0389850-mRNA-1:cds;Parent=Msa0389850-mRNA-1
chr3_2	CDS	374046	375130	374046	ID=Msa0389850-mRNA-1:cds;Parent=Msa0389850-mRNA-1

Gene Sequence

>Msa0389850

ATGAAATCTTTTGTTACTAACATTTTTCTACTTCTTTTGTTCTTTCCTTTAACTTCTTCCCTCCAACAAGTGCAAACAAAACTAGTTGAACCACCTTTGCTTCCAAAAAATTCATGCAATGAAACATGTGGAAAACTCCATGTTCCATTTCCTTTCTACATCAACAACACTTCATGTGCTTCATTGTCAAGTTCTTTCCACCTCTCTTGCTCAAATTCATCCACCCTTTTGATCAAAATAGATGGTTTGTTAGTAGACTTTCCAGGAACCTCATCGTGTCGACAGTACAACGATTTGAATTCATTTGGTGAGAAGAGTTTTGATGGAAGAAACTACTTTGGTGTATCAGTTGATAATGTTGTTGGTCTCTATGATTGTGAAGATTCTTCACTTTGTAAAGCAGATTGTGAAACAGTTAACCTTCCTGGTTGTGATGGAAGTGTAGGTGGTGGTTCTCTTGGATGTTGTTATCCACTTTCTGATCATAGGTTTTCTGTTTTTTCACAATTTGGATGTAGAGGATTTTCTAGTTGGGCTGTTTTGAGAGGTTCTTATTCAGGTAAAAGAGGGGTAAAATTGGAGTTTGGTATTCCTAGGAACTTTTCTAAGGAGATTTGTGCTAAGAATGCAGATATGGTGAATGCTACAGCAGTTAAAGGTGGCATAAGGTGTGTTTGTCAAGATGGATATGTTGGTGATGGAATTCTTTGTCCAGTTCTTATTGTTGCCTCCTTAGTTACACTATTCTATCTTCTAAAAAGAAAACAAAAGCCAGGAATGTTCGATTCCGAGCAAGCTTACTACCACAACATTTCATTCCGAAAAACGTGTAGAACTCGACTATTCAGCCATCATGAGCTAGAGGAAGCCACCAATGGTTTTGAAGAAAACAGAAAACTCATGCAATGCAATAACAGTACAATGTTCGCGGGTGTTCTTGGTGATGGATCACATGTAGCTATACACAAGTTATTAAAACGCGAGAATGAAAAAGACATGATGCAAGTCATGTCACAAATTGAAGTCCTATCTGCAATTGTACATAGAAATGTTGCATCAATTCTTGGTTGTTGCATTGATTCTAGCTACACTCCCCTAGTGGTTTATGAATATCCTTCAAATGGTACCTTAGAGGATCATTTACACCAAAAGTTCCAAAACATAGGACAAAAACTTGGTTTACATTGGTATAGGAGATTGAATATTGCAACAGAAATAGCCAGTACTATTGCATTGTTACATTATGATAAATCTCCTCCAATATTCCATCATAACCTAAAATCTAGTTGCATCTTCCTAGGTGATGATTTTTCTGTCAAGATTGCAGGATTTGGAATACTTAATGCTGATGTTAATAATTATGATTACAAGAATTGTGAGAATCGTGAACGCTTTCGCTCGTGCAAAAATGATGTCTATGACATAGGTGTATTGCTACTCGAGATTATCTACGGAACAAATCAATTGGACACACCTACATTAGCCTTGAAGAAAATTAGGGATGGAAAGATCGAAGAAATTGTCGATCCACTTCTTAATTATCACGAACAACTGCGTCATTGTCAAGAACAGATTCAGATCATTGCTGACCTTGCCACAAGATGTTTGCTGTTTAGTGGAGATGGAAAGATGGGAATGATTGATGTTGCTAGAGAATTGGTTCATTTAACAAAAGAGAGTGTTGATGGAGGAAATGTGAAAGGAATTGCTCTTGAAGAAACATTCTCAAATTCTAGTCTTCTTCAAATGATATCTTTGTCTCCTGATTCTATGAATGTTCCTTGA

Protein sequence

>Msa0389850

MKSFVTNIFLLLLFFPLTSSLQQVQTKLVEPPLLPKNSCNETCGKLHVPFPFYINNTSCASLSSSFHLSCSNSSTLLIKIDGLLVDFPGTSSCRQYNDLNSFGEKSFDGRNYFGVSVDNVVGLYDCEDSSLCKADCETVNLPGCDGSVGGGSLGCCYPLSDHRFSVFSQFGCRGFSSWAVLRGSYSGKRGVKLEFGIPRNFSKEICAKNADMVNATAVKGGIRCVCQDGYVGDGILCPVLIVASLVTLFYLLKRKQKPGMFDSEQAYYHNISFRKTCRTRLFSHHELEEATNGFEENRKLMQCNNSTMFAGVLGDGSHVAIHKLLKRENEKDMMQVMSQIEVLSAIVHRNVASILGCCIDSSYTPLVVYEYPSNGTLEDHLHQKFQNIGQKLGLHWYRRLNIATEIASTIALLHYDKSPPIFHHNLKSSCIFLGDDFSVKIAGFGILNADVNNYDYKNCENRERFRSCKNDVYDIGVLLLEIIYGTNQLDTPTLALKKIRDGKIEEIVDPLLNYHEQLRHCQEQIQIIADLATRCLLFSGDGKMGMIDVARELVHLTKESVDGGNVKGIALEETFSNSSLLQMISLSPDSMNVP*