Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0394740 | XP_003598365.1 | 94.025 | 318 | 5 | 2 | 1 | 304 | 8 | 325 | 0.0 | 612 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0394740 | G7IVH8 | 94.025 | 318 | 5 | 2 | 1 | 304 | 8 | 325 | 0.0 | 612 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0394740 | Msa1020510 | 0.817922 | 2.565026e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0394740 | MtrunA17_Chr3g0080411 | 94.025 | 318 | 5 | 2 | 1 | 304 | 8 | 325 | 0.0 | 612 |
Msa0394740 | MtrunA17_Chr3g0108541 | 34.810 | 316 | 173 | 13 | 2 | 299 | 10 | 310 | 6.93e-36 | 131 |
Msa0394740 | MtrunA17_Chr5g0432911 | 32.468 | 308 | 176 | 11 | 1 | 299 | 17 | 301 | 1.17e-35 | 130 |
Msa0394740 | MtrunA17_Chr8g0358861 | 29.167 | 312 | 190 | 10 | 1 | 299 | 1 | 294 | 9.49e-26 | 103 |
Msa0394740 | MtrunA17_Chr7g0245311 | 28.135 | 327 | 179 | 10 | 1 | 298 | 14 | 313 | 5.83e-25 | 102 |
Msa0394740 | MtrunA17_Chr8g0347761 | 27.240 | 279 | 172 | 10 | 30 | 295 | 34 | 294 | 1.29e-18 | 84.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0394740 | AT4G22900.1 | 47.077 | 325 | 135 | 9 | 7 | 298 | 12 | 332 | 3.50e-92 | 277 |
Msa0394740 | AT4G11950.1 | 43.168 | 322 | 148 | 8 | 7 | 298 | 10 | 326 | 1.38e-80 | 247 |
Msa0394740 | AT1G62981.2 | 41.234 | 308 | 145 | 13 | 21 | 299 | 41 | 341 | 3.63e-57 | 187 |
Msa0394740 | AT1G62981.1 | 41.234 | 308 | 145 | 13 | 21 | 299 | 41 | 341 | 3.63e-57 | 187 |
Msa0394740 | AT3G08600.1 | 32.082 | 293 | 157 | 11 | 26 | 294 | 37 | 311 | 2.93e-21 | 92.4 |
Msa0394740 | AT4G23720.1 | 26.990 | 289 | 178 | 13 | 19 | 294 | 38 | 306 | 2.64e-17 | 81.3 |
Msa0394740 | AT4G01140.1 | 27.368 | 285 | 185 | 11 | 20 | 297 | 28 | 297 | 2.26e-16 | 78.6 |
Msa0394740 | AT1G62981.3 | 39.098 | 133 | 67 | 6 | 177 | 299 | 80 | 208 | 6.79e-11 | 61.2 |
Find 42 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCCATTGACTTAGTCTTAT+TGG | 0.092073 | 3_2:+9895632 | None:intergenic |
GCTAAAACTCATGGACATTT+TGG | 0.170821 | 3_2:-9895701 | Msa0394740:CDS |
AGTACTATTGGTGCTGCTTT+AGG | 0.264423 | 3_2:-9895596 | Msa0394740:CDS |
TTATTGTCATTGAAATTTCA+TGG | 0.299770 | 3_2:-9896401 | Msa0394740:CDS |
AAGCTACCTTCAAATTTATC+AGG | 0.315618 | 3_2:-9896269 | Msa0394740:CDS |
CAACTTGTTTCTCCAATTGT+TGG | 0.336972 | 3_2:-9896050 | Msa0394740:CDS |
TAAGCTAAAATTCCAACAAT+TGG | 0.344113 | 3_2:+9896038 | None:intergenic |
GTTGGTGTTGTTCTAGTTCC+AGG | 0.353242 | 3_2:+9895431 | None:intergenic |
TTATGAAGAAGAAGCACTTC+AGG | 0.366104 | 3_2:-9895489 | Msa0394740:CDS |
GCATAGAGTATAATAATAAT+TGG | 0.373049 | 3_2:-9896115 | Msa0394740:CDS |
AAGGTATGGTGCAAAATTAA+AGG | 0.383254 | 3_2:-9896204 | Msa0394740:CDS |
AAGGAGTTTCATCTTGGTAT+TGG | 0.399934 | 3_2:-9896185 | Msa0394740:CDS |
TTTCAAGAATCAAGAAGAAA+AGG | 0.407881 | 3_2:-9895916 | Msa0394740:CDS |
TTGATGCCTGATAAATTTGA+AGG | 0.417038 | 3_2:+9896263 | None:intergenic |
GCTTCAATTCCAAGTTGAAA+AGG | 0.422597 | 3_2:+9895981 | None:intergenic |
ACACAAACATTTGTTGCTAA+AGG | 0.423104 | 3_2:+9895725 | None:intergenic |
ATTGCTGTTGGGAGTACTAT+TGG | 0.428321 | 3_2:-9895608 | Msa0394740:CDS |
GCACTTCAGGTTTCAATGGT+TGG | 0.434477 | 3_2:-9895476 | Msa0394740:CDS |
AGAAGCACTTCAGGTTTCAA+TGG | 0.442190 | 3_2:-9895480 | Msa0394740:CDS |
GAAGGTAGCTTCACAGATTG+AGG | 0.451958 | 3_2:+9896281 | None:intergenic |
CTTCAATTCCAAGTTGAAAA+GGG | 0.452206 | 3_2:+9895982 | None:intergenic |
AAATTAAAGGAGTTTCATCT+TGG | 0.452708 | 3_2:-9896191 | Msa0394740:CDS |
AACATTACTCTTTCAATACA+TGG | 0.463603 | 3_2:+9896149 | None:intergenic |
GTCAATGGAAAATTGCTGTT+GGG | 0.471587 | 3_2:-9895619 | Msa0394740:CDS |
TTTCAACTTGGAATTGAAGC+TGG | 0.480245 | 3_2:-9895978 | Msa0394740:CDS |
TTAGACAAAGATTTCAAGAC+AGG | 0.484697 | 3_2:-9896308 | Msa0394740:CDS |
GTTCTAGTTCCAGGTGCAGT+AGG | 0.488529 | 3_2:+9895440 | None:intergenic |
TGAATGTGTAATCTCTTATG+AGG | 0.490113 | 3_2:+9896336 | None:intergenic |
GGTTAAGAAAAGGTCAAGAA+TGG | 0.493692 | 3_2:-9895531 | Msa0394740:CDS |
AGCCAATAAGACTAAGTCAA+TGG | 0.499042 | 3_2:-9895634 | Msa0394740:CDS |
GTTTGTGTTGCTAAAACTCA+TGG | 0.503467 | 3_2:-9895710 | Msa0394740:CDS |
TGTGGAAGTTTAACAAGGTA+TGG | 0.509899 | 3_2:-9896218 | Msa0394740:CDS |
AGTCAATGGAAAATTGCTGT+TGG | 0.510007 | 3_2:-9895620 | Msa0394740:CDS |
TTCAAGAATCAAGAAGAAAA+GGG | 0.519947 | 3_2:-9895915 | Msa0394740:intron |
AAGGTCAAGAATGGTTCAGA+TGG | 0.524303 | 3_2:-9895522 | Msa0394740:CDS |
TGGTTGTTAGGGTTAAGAAA+AGG | 0.555158 | 3_2:-9895541 | Msa0394740:CDS |
GTGAGAGCTCCTACTGCACC+TGG | 0.585262 | 3_2:-9895449 | Msa0394740:CDS |
TTAGATGTGGAAGTTTAACA+AGG | 0.623871 | 3_2:-9896223 | Msa0394740:CDS |
GATACTGTGAGATTTAGATG+TGG | 0.646729 | 3_2:-9896236 | Msa0394740:CDS |
TAGTCATGTTGCTCAAGTGT+TGG | 0.655160 | 3_2:+9895413 | None:intergenic |
ATGTGTAATCTCTTATGAGG+AGG | 0.665772 | 3_2:+9896339 | None:intergenic |
TGCAGTAAACCTTATCAACG+AGG | 0.756012 | 3_2:+9895377 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATTGTCATTGAAATTTCA+TGG | - | chr3_2:9895409-9895428 | Msa0394740:CDS | 20.0% |
!! | GCATAGAGTATAATAATAAT+TGG | - | chr3_2:9895695-9895714 | Msa0394740:CDS | 20.0% |
!!! | NNNNNAAGTTTTGAAGGAAA+TGG | - | chr3_2:9896037-9896056 | Msa0394740:CDS | 20.0% |
!! | TTATTGTCATTGAAATTTCA+TGG | - | chr3_2:9895409-9895428 | Msa0394740:CDS | 20.0% |
!! | GCATAGAGTATAATAATAAT+TGG | - | chr3_2:9895695-9895714 | Msa0394740:CDS | 20.0% |
!!! | NNNNNAAGTTTTGAAGGAAA+TGG | - | chr3_2:9896037-9896056 | Msa0394740:CDS | 20.0% |
! | AAATTAAAGGAGTTTCATCT+TGG | - | chr3_2:9895619-9895638 | Msa0394740:CDS | 25.0% |
! | AACATTACTCTTTCAATACA+TGG | + | chr3_2:9895664-9895683 | None:intergenic | 25.0% |
! | TAAGCTAAAATTCCAACAAT+TGG | + | chr3_2:9895775-9895794 | None:intergenic | 25.0% |
! | TTTCAAGAATCAAGAAGAAA+AGG | - | chr3_2:9895894-9895913 | Msa0394740:intron | 25.0% |
! | TTCAAGAATCAAGAAGAAAA+GGG | - | chr3_2:9895895-9895914 | Msa0394740:intron | 25.0% |
! | AAATTAAAGGAGTTTCATCT+TGG | - | chr3_2:9895619-9895638 | Msa0394740:CDS | 25.0% |
! | AACATTACTCTTTCAATACA+TGG | + | chr3_2:9895664-9895683 | None:intergenic | 25.0% |
! | TAAGCTAAAATTCCAACAAT+TGG | + | chr3_2:9895775-9895794 | None:intergenic | 25.0% |
! | TTTCAAGAATCAAGAAGAAA+AGG | - | chr3_2:9895894-9895913 | Msa0394740:intron | 25.0% |
! | TTCAAGAATCAAGAAGAAAA+GGG | - | chr3_2:9895895-9895914 | Msa0394740:intron | 25.0% |
TGAATGTGTAATCTCTTATG+AGG | + | chr3_2:9895477-9895496 | None:intergenic | 30.0% | |
TTAGACAAAGATTTCAAGAC+AGG | - | chr3_2:9895502-9895521 | Msa0394740:CDS | 30.0% | |
AAGCTACCTTCAAATTTATC+AGG | - | chr3_2:9895541-9895560 | Msa0394740:CDS | 30.0% | |
TTGATGCCTGATAAATTTGA+AGG | + | chr3_2:9895550-9895569 | None:intergenic | 30.0% | |
TTAGATGTGGAAGTTTAACA+AGG | - | chr3_2:9895587-9895606 | Msa0394740:CDS | 30.0% | |
AAGGTATGGTGCAAAATTAA+AGG | - | chr3_2:9895606-9895625 | Msa0394740:CDS | 30.0% | |
! | CTTCAATTCCAAGTTGAAAA+GGG | + | chr3_2:9895831-9895850 | None:intergenic | 30.0% |
! | ACACAAACATTTGTTGCTAA+AGG | + | chr3_2:9896088-9896107 | None:intergenic | 30.0% |
!! | TTCCATTGACTTAGTCTTAT+TGG | + | chr3_2:9896181-9896200 | None:intergenic | 30.0% |
!!! | AGGTTTACTTTTTGTAGCAA+TGG | - | chr3_2:9896249-9896268 | Msa0394740:CDS | 30.0% |
! | TTTTTGTAGCAATGGTTGTT+AGG | - | chr3_2:9896257-9896276 | Msa0394740:CDS | 30.0% |
! | TTTTGTAGCAATGGTTGTTA+GGG | - | chr3_2:9896258-9896277 | Msa0394740:CDS | 30.0% |
TGAATGTGTAATCTCTTATG+AGG | + | chr3_2:9895477-9895496 | None:intergenic | 30.0% | |
TTAGACAAAGATTTCAAGAC+AGG | - | chr3_2:9895502-9895521 | Msa0394740:CDS | 30.0% | |
AAGCTACCTTCAAATTTATC+AGG | - | chr3_2:9895541-9895560 | Msa0394740:CDS | 30.0% | |
TTGATGCCTGATAAATTTGA+AGG | + | chr3_2:9895550-9895569 | None:intergenic | 30.0% | |
TTAGATGTGGAAGTTTAACA+AGG | - | chr3_2:9895587-9895606 | Msa0394740:CDS | 30.0% | |
AAGGTATGGTGCAAAATTAA+AGG | - | chr3_2:9895606-9895625 | Msa0394740:CDS | 30.0% | |
! | CTTCAATTCCAAGTTGAAAA+GGG | + | chr3_2:9895831-9895850 | None:intergenic | 30.0% |
! | ACACAAACATTTGTTGCTAA+AGG | + | chr3_2:9896088-9896107 | None:intergenic | 30.0% |
!! | TTCCATTGACTTAGTCTTAT+TGG | + | chr3_2:9896181-9896200 | None:intergenic | 30.0% |
!!! | AGGTTTACTTTTTGTAGCAA+TGG | - | chr3_2:9896249-9896268 | Msa0394740:CDS | 30.0% |
! | TTTTTGTAGCAATGGTTGTT+AGG | - | chr3_2:9896257-9896276 | Msa0394740:CDS | 30.0% |
! | TTTTGTAGCAATGGTTGTTA+GGG | - | chr3_2:9896258-9896277 | Msa0394740:CDS | 30.0% |
ATGTGTAATCTCTTATGAGG+AGG | + | chr3_2:9895474-9895493 | None:intergenic | 35.0% | |
GATACTGTGAGATTTAGATG+TGG | - | chr3_2:9895574-9895593 | Msa0394740:CDS | 35.0% | |
TGTGGAAGTTTAACAAGGTA+TGG | - | chr3_2:9895592-9895611 | Msa0394740:CDS | 35.0% | |
AAGGAGTTTCATCTTGGTAT+TGG | - | chr3_2:9895625-9895644 | Msa0394740:CDS | 35.0% | |
! | CAACTTGTTTCTCCAATTGT+TGG | - | chr3_2:9895760-9895779 | Msa0394740:CDS | 35.0% |
! | AGTAGTAACCCTTTTCAACT+TGG | - | chr3_2:9895820-9895839 | Msa0394740:intron | 35.0% |
! | GCTTCAATTCCAAGTTGAAA+AGG | + | chr3_2:9895832-9895851 | None:intergenic | 35.0% |
TTTCAACTTGGAATTGAAGC+TGG | - | chr3_2:9895832-9895851 | Msa0394740:intron | 35.0% | |
! | GTTTGTGTTGCTAAAACTCA+TGG | - | chr3_2:9896100-9896119 | Msa0394740:CDS | 35.0% |
! | GCTAAAACTCATGGACATTT+TGG | - | chr3_2:9896109-9896128 | Msa0394740:CDS | 35.0% |
!!! | AACTCATGGACATTTTGGTT+TGG | - | chr3_2:9896114-9896133 | Msa0394740:CDS | 35.0% |
AGCCAATAAGACTAAGTCAA+TGG | - | chr3_2:9896176-9896195 | Msa0394740:CDS | 35.0% | |
AGTCAATGGAAAATTGCTGT+TGG | - | chr3_2:9896190-9896209 | Msa0394740:CDS | 35.0% | |
! | GTCAATGGAAAATTGCTGTT+GGG | - | chr3_2:9896191-9896210 | Msa0394740:CDS | 35.0% |
!! | GCTTTAGGTGCTTTTCTTTT+AGG | - | chr3_2:9896229-9896248 | Msa0394740:CDS | 35.0% |
TGGTTGTTAGGGTTAAGAAA+AGG | - | chr3_2:9896269-9896288 | Msa0394740:CDS | 35.0% | |
GGTTAAGAAAAGGTCAAGAA+TGG | - | chr3_2:9896279-9896298 | Msa0394740:CDS | 35.0% | |
!! | TTATGAAGAAGAAGCACTTC+AGG | - | chr3_2:9896321-9896340 | Msa0394740:CDS | 35.0% |
ATGTGTAATCTCTTATGAGG+AGG | + | chr3_2:9895474-9895493 | None:intergenic | 35.0% | |
GATACTGTGAGATTTAGATG+TGG | - | chr3_2:9895574-9895593 | Msa0394740:CDS | 35.0% | |
TGTGGAAGTTTAACAAGGTA+TGG | - | chr3_2:9895592-9895611 | Msa0394740:CDS | 35.0% | |
AAGGAGTTTCATCTTGGTAT+TGG | - | chr3_2:9895625-9895644 | Msa0394740:CDS | 35.0% | |
! | CAACTTGTTTCTCCAATTGT+TGG | - | chr3_2:9895760-9895779 | Msa0394740:CDS | 35.0% |
! | AGTAGTAACCCTTTTCAACT+TGG | - | chr3_2:9895820-9895839 | Msa0394740:intron | 35.0% |
! | GCTTCAATTCCAAGTTGAAA+AGG | + | chr3_2:9895832-9895851 | None:intergenic | 35.0% |
TTTCAACTTGGAATTGAAGC+TGG | - | chr3_2:9895832-9895851 | Msa0394740:intron | 35.0% | |
! | GTTTGTGTTGCTAAAACTCA+TGG | - | chr3_2:9896100-9896119 | Msa0394740:CDS | 35.0% |
! | GCTAAAACTCATGGACATTT+TGG | - | chr3_2:9896109-9896128 | Msa0394740:CDS | 35.0% |
!!! | AACTCATGGACATTTTGGTT+TGG | - | chr3_2:9896114-9896133 | Msa0394740:CDS | 35.0% |
AGCCAATAAGACTAAGTCAA+TGG | - | chr3_2:9896176-9896195 | Msa0394740:CDS | 35.0% | |
AGTCAATGGAAAATTGCTGT+TGG | - | chr3_2:9896190-9896209 | Msa0394740:CDS | 35.0% | |
! | GTCAATGGAAAATTGCTGTT+GGG | - | chr3_2:9896191-9896210 | Msa0394740:CDS | 35.0% |
!! | GCTTTAGGTGCTTTTCTTTT+AGG | - | chr3_2:9896229-9896248 | Msa0394740:CDS | 35.0% |
TGGTTGTTAGGGTTAAGAAA+AGG | - | chr3_2:9896269-9896288 | Msa0394740:CDS | 35.0% | |
GGTTAAGAAAAGGTCAAGAA+TGG | - | chr3_2:9896279-9896298 | Msa0394740:CDS | 35.0% | |
!! | TTATGAAGAAGAAGCACTTC+AGG | - | chr3_2:9896321-9896340 | Msa0394740:CDS | 35.0% |
!! | ATTGCTGTTGGGAGTACTAT+TGG | - | chr3_2:9896202-9896221 | Msa0394740:CDS | 40.0% |
!! | AGTACTATTGGTGCTGCTTT+AGG | - | chr3_2:9896214-9896233 | Msa0394740:CDS | 40.0% |
AAGGTCAAGAATGGTTCAGA+TGG | - | chr3_2:9896288-9896307 | Msa0394740:CDS | 40.0% | |
!! | AGAAGCACTTCAGGTTTCAA+TGG | - | chr3_2:9896330-9896349 | Msa0394740:CDS | 40.0% |
TAGTCATGTTGCTCAAGTGT+TGG | + | chr3_2:9896400-9896419 | None:intergenic | 40.0% | |
!! | ATTGCTGTTGGGAGTACTAT+TGG | - | chr3_2:9896202-9896221 | Msa0394740:CDS | 40.0% |
!! | AGTACTATTGGTGCTGCTTT+AGG | - | chr3_2:9896214-9896233 | Msa0394740:CDS | 40.0% |
AAGGTCAAGAATGGTTCAGA+TGG | - | chr3_2:9896288-9896307 | Msa0394740:CDS | 40.0% | |
!! | AGAAGCACTTCAGGTTTCAA+TGG | - | chr3_2:9896330-9896349 | Msa0394740:CDS | 40.0% |
TAGTCATGTTGCTCAAGTGT+TGG | + | chr3_2:9896400-9896419 | None:intergenic | 40.0% | |
GAAGGTAGCTTCACAGATTG+AGG | + | chr3_2:9895532-9895551 | None:intergenic | 45.0% | |
! | GCACTTCAGGTTTCAATGGT+TGG | - | chr3_2:9896334-9896353 | Msa0394740:CDS | 45.0% |
!! | GTTGGTGTTGTTCTAGTTCC+AGG | + | chr3_2:9896382-9896401 | None:intergenic | 45.0% |
GAAGGTAGCTTCACAGATTG+AGG | + | chr3_2:9895532-9895551 | None:intergenic | 45.0% | |
! | GCACTTCAGGTTTCAATGGT+TGG | - | chr3_2:9896334-9896353 | Msa0394740:CDS | 45.0% |
!! | GTTGGTGTTGTTCTAGTTCC+AGG | + | chr3_2:9896382-9896401 | None:intergenic | 45.0% |
!! | GTTCTAGTTCCAGGTGCAGT+AGG | + | chr3_2:9896373-9896392 | None:intergenic | 50.0% |
!! | GTTCTAGTTCCAGGTGCAGT+AGG | + | chr3_2:9896373-9896392 | None:intergenic | 50.0% |
GTGAGAGCTCCTACTGCACC+TGG | - | chr3_2:9896361-9896380 | Msa0394740:CDS | 60.0% | |
GTGAGAGCTCCTACTGCACC+TGG | - | chr3_2:9896361-9896380 | Msa0394740:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 9895391 | 9896441 | 9895391 | ID=Msa0394740;Name=Msa0394740 |
chr3_2 | mRNA | 9895391 | 9896441 | 9895391 | ID=Msa0394740-mRNA-1;Parent=Msa0394740;Name=Msa0394740-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|304 |
chr3_2 | exon | 9895916 | 9896441 | 9895916 | ID=Msa0394740-mRNA-1:exon:2607;Parent=Msa0394740-mRNA-1 |
chr3_2 | exon | 9895391 | 9895779 | 9895391 | ID=Msa0394740-mRNA-1:exon:2606;Parent=Msa0394740-mRNA-1 |
chr3_2 | CDS | 9895916 | 9896441 | 9895916 | ID=Msa0394740-mRNA-1:cds;Parent=Msa0394740-mRNA-1 |
chr3_2 | CDS | 9895391 | 9895779 | 9895391 | ID=Msa0394740-mRNA-1:cds;Parent=Msa0394740-mRNA-1 |
Gene Sequence |
Protein sequence |