AlfalfaGEDB | Msa0395350

M. sativa cultivar zhongmu-4 / Msa0395350

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395350	RHN65530.1	88.643	361	27	3	1	347	21	381	0.0	652

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395350	sp\|Q9FFW5\|PERK8_ARATH	42.857	315	150	8	22	313	314	621	1.03e-67	231

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395350	A0A396IK04	88.643	361	27	3	1	347	21	381	0.0	652

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0395350	Msa0490250	0.816531	5.270388e-52	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395350	MtrunA17_Chr3g0080881	88.643	361	27	3	1	347	21	381	0.0	652
Msa0395350	MtrunA17_Chr3g0080901	61.329	331	116	3	24	344	99	427	9.85e-143	417
Msa0395350	MtrunA17_Chr8g0354651	62.406	266	87	4	2	257	63	325	2.11e-109	327
Msa0395350	MtrunA17_Chr3g0093601	46.926	309	150	5	7	302	59	366	1.35e-87	271
Msa0395350	MtrunA17_Chr3g0093611	45.370	324	151	6	3	302	12	333	4.81e-83	258
Msa0395350	MtrunA17_Chr8g0341881	46.689	302	143	5	24	307	375	676	3.56e-80	262
Msa0395350	MtrunA17_Chr2g0330471	46.026	302	145	5	24	307	377	678	2.07e-79	259
Msa0395350	MtrunA17_Chr8g0389251	46.026	302	145	5	24	307	374	675	2.12e-79	258
Msa0395350	MtrunA17_Chr3g0093591	45.603	307	154	4	15	309	95	400	2.83e-78	249
Msa0395350	MtrunA17_Chr7g0221191	42.282	298	151	6	35	311	376	673	4.55e-66	224

Showing 1 to 10 of 503 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395350	AT5G56790.1	47.682	302	140	6	24	307	360	661	4.40e-81	263
Msa0395350	AT1G55200.3	46.026	302	145	5	24	307	349	650	9.51e-78	254
Msa0395350	AT1G55200.4	46.026	302	145	5	24	307	349	650	9.51e-78	254
Msa0395350	AT1G55200.1	46.026	302	145	5	24	307	349	650	9.51e-78	254
Msa0395350	AT1G55200.2	46.026	302	145	5	24	307	349	650	9.51e-78	254
Msa0395350	AT3G13690.2	45.695	302	146	5	24	307	381	682	1.20e-76	253
Msa0395350	AT3G13690.1	45.695	302	146	5	24	307	381	682	1.20e-76	253
Msa0395350	AT3G13690.3	45.695	302	146	5	24	307	381	682	1.20e-76	253
Msa0395350	AT5G38560.1	42.857	315	150	8	22	313	314	621	1.04e-68	231
Msa0395350	AT1G23540.1	41.139	316	156	7	12	306	338	644	3.31e-66	224

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 79 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGATGTATATTCTTT+TGG	0.214358	3_2:-11824062	Msa0395350:CDS
AAACATATAGAGGAAGGTTG+CGG	0.573832	3_2:-11822445	Msa0395350:CDS
AAATCCAAAGGAAATTTCTT+TGG	0.283482	3_2:-11821621	Msa0395350:CDS
AACCTCTATGCTGGCAAGAT+CGG	0.433044	3_2:-11824688	Msa0395350:CDS
AACTCGTGTGTAACTTGCGC+GGG	0.521147	3_2:+11821649	None:intergenic
AATAGAATGTCCTGGAAATC+TGG	0.355814	3_2:-11824129	Msa0395350:CDS
ACAAGAGACCAAAACTTGAT+TGG	0.420340	3_2:-11825252	Msa0395350:CDS
ACCCGATCTTGCCAGCATAG+AGG	0.546872	3_2:+11824686	None:intergenic
ACCTCTATGCTGGCAAGATC+GGG	0.400676	3_2:-11824687	Msa0395350:CDS
ACGAGTTAAATCAAATCCAA+AGG	0.624531	3_2:-11821633	Msa0395350:CDS

Showing 1 to 10 of 79 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAAAATATTGTCATGTTGCT+TGG	-	chr3_2:11821915-11821934	Msa0395350:intron	30.0%
ATTCATAAACAAGAAGCCTA+TGG	+	chr3_2:11821959-11821978	None:intergenic	30.0%
GTTTATGAATATGTCTGCAA+TGG	-	chr3_2:11821969-11821988	Msa0395350:intron	30.0%
ATAGCATACGTGATAAATGT+TGG	+	chr3_2:11822004-11822023	None:intergenic	30.0%
CGCAATTTAAGAACATAATC+AGG	+	chr3_2:11822068-11822087	None:intergenic	30.0%
TTTAAAAGTCATACAAGCGA+AGG	-	chr3_2:11822645-11822664	Msa0395350:intron	30.0%
GACCAACCTTAAAAATAAAG+AGG	-	chr3_2:11822704-11822723	Msa0395350:intron	30.0%
CATTAAAATGCTAACAAACG+TGG	-	chr3_2:11823072-11823091	Msa0395350:intron	30.0%
GGAACACAAACTAATGATTA+CGG	+	chr3_2:11823448-11823467	None:intergenic	30.0%
ACAGATAAATAAACACACTC+AGG	+	chr3_2:11823469-11823488	None:intergenic	30.0%

Showing 1 to 10 of 194 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	11821597	11825362	11821597	ID=Msa0395350;Name=Msa0395350
chr3_2	mRNA	11821597	11825362	11821597	ID=Msa0395350-mRNA-1;Parent=Msa0395350;Name=Msa0395350-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0\|0\|0\|0.87\|0.57\|0.37\|8\|0\|429
chr3_2	exon	11825206	11825362	11825206	ID=Msa0395350-mRNA-1:exon:2797;Parent=Msa0395350-mRNA-1
chr3_2	exon	11824945	11825175	11824945	ID=Msa0395350-mRNA-1:exon:2796;Parent=Msa0395350-mRNA-1
chr3_2	exon	11824574	11824722	11824574	ID=Msa0395350-mRNA-1:exon:2795;Parent=Msa0395350-mRNA-1
chr3_2	exon	11823986	11824201	11823986	ID=Msa0395350-mRNA-1:exon:2794;Parent=Msa0395350-mRNA-1
chr3_2	exon	11823252	11823401	11823252	ID=Msa0395350-mRNA-1:exon:2793;Parent=Msa0395350-mRNA-1
chr3_2	exon	11822353	11822482	11822353	ID=Msa0395350-mRNA-1:exon:2792;Parent=Msa0395350-mRNA-1
chr3_2	exon	11821701	11821876	11821701	ID=Msa0395350-mRNA-1:exon:2791;Parent=Msa0395350-mRNA-1
chr3_2	exon	11821597	11821674	11821597	ID=Msa0395350-mRNA-1:exon:2790;Parent=Msa0395350-mRNA-1
chr3_2	CDS	11825206	11825362	11825206	ID=Msa0395350-mRNA-1:cds;Parent=Msa0395350-mRNA-1
chr3_2	CDS	11824945	11825175	11824945	ID=Msa0395350-mRNA-1:cds;Parent=Msa0395350-mRNA-1
chr3_2	CDS	11824574	11824722	11824574	ID=Msa0395350-mRNA-1:cds;Parent=Msa0395350-mRNA-1
chr3_2	CDS	11823986	11824201	11823986	ID=Msa0395350-mRNA-1:cds;Parent=Msa0395350-mRNA-1
chr3_2	CDS	11823252	11823401	11823252	ID=Msa0395350-mRNA-1:cds;Parent=Msa0395350-mRNA-1
chr3_2	CDS	11822353	11822482	11822353	ID=Msa0395350-mRNA-1:cds;Parent=Msa0395350-mRNA-1
chr3_2	CDS	11821701	11821876	11821701	ID=Msa0395350-mRNA-1:cds;Parent=Msa0395350-mRNA-1
chr3_2	CDS	11821597	11821674	11821597	ID=Msa0395350-mRNA-1:cds;Parent=Msa0395350-mRNA-1

Gene Sequence

>Msa0395350

ATGTCTCTCACTCATCATAACAACCATGAAGAACATCATCAAATAGTTGAACAAACATCAGAGAATTCTGTTTGTTCAATGTGCTACAACAAGAGACCAAAACTTGATTGGACAAGAAGAGACTTCACATATGCTGAATTGCATGCAGCAACACAAGGTGGATTTGGTTCTGTCTATAAAGGGGAGATTCATGGACAGAAGATTGCTGTTAAACAATGTTTACATGCAAGTCACAAACGAGAGAAGGAGTTTAAGTCTGAAGTTGATGCATTAAGCAAAGCAAGACATGAAAATATTGTCATGTTGCTTGGATTATGTTCTGAAGGAAACCATAGGCTTCTTGTTTATGAATATGTCTGCAATGGTTCACTAGACCAACATTTATCACAATACTCTCGTAAACCTCTATGCTGGCAAGATCGGGTGAAAGTAGCTAATGGTGCTGCCAAAGGATTGCTTTACCTTCATCAGAACAACATCATACATAGAGATATAAAACCAAACAACATTCTTCTGACACATGATTATGAAGCTATGCTGGGAGATTTCGGTTTGGCTAAAATTGCAAGTGAAGAATTCTCATGCTCAATAGAATGTCCTGGAAATCTGGCATATTGGGCACCAGAATATGCTGCATATGGTAAAGTATCAAATAAAACAGATGTATATTCTTTTGGAGTGGTTCTTGTTGAGCTAATAACTGGAATGAGGACTACAGACAAAAGACTTGGAGGAAAGAGTCTAGTAGGATGGGCTAGACCACTACTAAGAGAAGGGAATTGTCAAAAACTTGTTGATGGAAGGATAATGGATTCACATCATTGTCATCAAATCTTTTGGATGAGCCGTCTAGCTGGAAATTGTCTTAACAAAGATCCTCATAAACGATTGGATATGAATACAGTGGTCAAAGCCTTAAAACATATAGAGGAAGGTTGCGGTAGCTGCATTGTTGAAAAAGACAGTAGTACCCTTGCCATGTCAGACTGTTCTAAATCAAAAGATGATATGCAGGACCCTTCAGAATCAGATGGTGTTAATATTGATGGTGCATTTCTAGAGGCTGCCTCATCTTTTCTAGCATATCAGATTGTACCTATTCCATTCAAGTTTTTTGGCATCCCAGTTGGAGCCAATCCGAGGCATTGTTCGACATGGAATCCAATAGTCACTCTAATTGATTCAGTATACAGTATTAAGCAGTCTGCCGCTCCCGCGCAAGTTACACACGAGTTAAATCAAATCCAAAGGAAATTTCTTTGGTGTGGCATGGCAGAGGGCCGAAAG

Protein sequence

>Msa0395350

MSLTHHNNHEEHHQIVEQTSENSVCSMCYNKRPKLDWTRRDFTYAELHAATQGGFGSVYKGEIHGQKIAVKQCLHASHKREKEFKSEVDALSKARHENIVMLLGLCSEGNHRLLVYEYVCNGSLDQHLSQYSRKPLCWQDRVKVANGAAKGLLYLHQNNIIHRDIKPNNILLTHDYEAMLGDFGLAKIASEEFSCSIECPGNLAYWAPEYAAYGKVSNKTDVYSFGVVLVELITGMRTTDKRLGGKSLVGWARPLLREGNCQKLVDGRIMDSHHCHQIFWMSRLAGNCLNKDPHKRLDMNTVVKALKHIEEGCGSCIVEKDSSTLAMSDCSKSKDDMQDPSESDGVNIDGAFLEAASSFLAYQIVPIPFKFFGIPVGANPRHCSTWNPIVTLIDSVYSIKQSAAPAQVTHELNQIQRKFLWCGMAEGRK