AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0396070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0396070 MtrunA17_Chr8g0358031 88.153 498 56 1 1 495 2 499 0.0 918
Msa0396070 MtrunA17_Chr8g0358071 79.116 498 98 4 1 495 2 496 0.0 808
Msa0396070 MtrunA17_Chr8g0358101 76.162 495 107 3 1 495 1 484 0.0 754
Msa0396070 MtrunA17_Chr8g0358081 74.141 495 114 4 1 495 1 481 0.0 736
Msa0396070 MtrunA17_Chr8g0357801 73.747 499 121 6 1 495 1 493 0.0 726
Msa0396070 MtrunA17_Chr8g0358121 74.044 497 112 7 1 495 1 482 0.0 714
Msa0396070 MtrunA17_Chr8g0357961 68.872 514 131 7 1 495 1 504 0.0 704
Msa0396070 MtrunA17_Chr8g0357991 70.428 514 124 7 1 495 1 505 0.0 698
Msa0396070 MtrunA17_Chr8g0357881 71.371 496 135 4 1 495 7 496 0.0 694
Msa0396070 MtrunA17_Chr8g0357931 70.221 497 135 8 1 495 1 486 0.0 677
Msa0396070 MtrunA17_Chr8g0358151 72.980 396 95 6 1 394 1 386 0.0 580
Msa0396070 MtrunA17_Chr8g0357981 72.508 331 85 3 165 495 1 325 5.72e-171 496
Msa0396070 MtrunA17_Chr1g0191111 73.462 260 58 3 1 258 16 266 4.35e-131 380
Msa0396070 MtrunA17_Chr8g0357691 45.686 510 248 17 1 495 3 498 2.81e-125 384
Msa0396070 MtrunA17_Chr8g0357631 44.752 505 235 12 9 495 10 488 5.44e-125 383
Msa0396070 MtrunA17_Chr8g0357761 46.050 519 237 18 1 495 1 500 9.95e-121 372
Msa0396070 MtrunA17_Chr8g0357711 44.291 508 246 17 7 495 8 497 5.64e-115 357
Msa0396070 MtrunA17_Chr8g0357651 42.485 499 261 13 7 495 8 490 1.28e-110 346
Msa0396070 MtrunA17_Chr8g0357681 46.366 399 184 13 1 383 3 387 5.03e-103 314
Msa0396070 MtrunA17_Chr8g0358051 69.945 183 48 2 1 183 1 176 2.59e-84 258
Msa0396070 MtrunA17_Chr6g0470621 77.241 145 32 1 165 309 2 145 4.80e-75 233
Msa0396070 MtrunA17_Chr8g0358131 93.069 101 7 0 82 182 1 101 1.25e-62 199
Msa0396070 MtrunA17_Chr8g0357971 80.556 108 21 0 1 108 1 108 3.78e-54 177
Msa0396070 MtrunA17_Chr8g0357821 49.758 207 90 6 1 196 1 204 4.57e-52 176
Msa0396070 MtrunA17_Chr8g0357831 44.595 222 102 8 285 495 1 212 2.24e-45 166
Msa0396070 MtrunA17_Chr2g0280681 26.277 548 316 21 7 495 3 521 3.35e-35 140
Msa0396070 MtrunA17_Chr4g0048641 26.931 479 287 16 46 495 63 507 1.61e-32 132
Msa0396070 MtrunA17_Chr4g0048741 24.864 551 328 17 8 492 19 549 3.27e-32 130
Msa0396070 MtrunA17_Chr8g0361251 27.437 554 306 23 6 495 5 526 5.26e-32 130
Msa0396070 MtrunA17_Chr8g0361301 26.173 554 322 20 1 495 1 526 1.66e-31 129
Msa0396070 MtrunA17_Chr8g0361261 25.271 554 327 20 1 495 32 557 1.41e-30 126
Msa0396070 MtrunA17_Chr4g0048761 24.729 554 333 18 8 495 19 554 2.58e-30 124
Msa0396070 MtrunA17_Chr8g0361141 24.909 550 328 18 10 495 8 536 6.60e-30 124
Msa0396070 MtrunA17_Chr8g0358061 80.000 70 14 0 426 495 33 102 2.95e-29 118
Msa0396070 MtrunA17_Chr4g0048801 25.607 535 309 21 32 495 22 538 1.26e-27 117
Msa0396070 MtrunA17_Chr8g0361281 25.156 481 276 18 80 495 72 533 1.18e-26 114
Msa0396070 MtrunA17_Chr5g0428101 24.053 528 311 18 27 495 25 521 1.41e-26 114
Msa0396070 MtrunA17_Chr4g0048721 25.000 484 288 14 7 425 10 483 2.63e-26 111
Msa0396070 MtrunA17_Chr5g0428111 24.340 530 308 21 27 495 26 523 3.30e-26 112
Msa0396070 MtrunA17_Chr2g0318811 23.985 542 322 21 11 492 6 517 5.16e-26 112
Msa0396070 MtrunA17_Chr5g0422921 25.143 525 316 19 27 495 15 518 8.89e-26 111
Msa0396070 MtrunA17_Chr8g0358141 80.000 65 10 1 434 495 22 86 6.58e-25 106
Msa0396070 MtrunA17_Chr2g0318831 26.040 553 314 21 1 492 1 519 3.32e-24 106
Msa0396070 MtrunA17_Chr3g0093161 26.078 510 292 19 44 495 35 517 3.56e-24 106
Msa0396070 MtrunA17_Chr8g0358161 80.000 65 11 1 431 495 4 66 4.21e-24 103
Msa0396070 MtrunA17_Chr4g0048631 26.568 542 309 23 29 495 25 552 6.54e-24 105
Msa0396070 MtrunA17_Chr4g0042401 25.725 552 314 23 10 495 3 524 7.98e-24 105
Msa0396070 MtrunA17_Chr3g0078551 27.205 533 302 24 32 495 28 543 9.37e-24 105
Msa0396070 MtrunA17_Chr3g0084491 23.464 537 327 19 8 492 19 523 3.42e-23 103
Msa0396070 MtrunA17_Chr4g0048791 24.859 531 322 18 26 495 38 552 4.57e-23 103
Msa0396070 MtrunA17_Chr7g0236511 23.208 530 309 20 27 495 29 521 6.74e-23 102
Msa0396070 MtrunA17_Chr3g0084621 24.449 544 323 21 8 492 6 520 1.09e-22 101
Msa0396070 MtrunA17_Chr3g0084431 23.872 532 333 19 7 492 6 511 1.78e-22 101
Msa0396070 MtrunA17_Chr3g0084411 23.782 513 314 19 33 492 28 516 6.06e-22 99.8
Msa0396070 MtrunA17_Chr3g0098791 24.947 469 266 17 80 492 81 519 7.25e-22 99.0
Msa0396070 MtrunA17_Chr2g0280701 23.243 555 319 20 11 495 3 520 9.62e-22 99.0
Msa0396070 MtrunA17_Chr2g0280691 23.640 533 329 17 30 495 25 546 1.03e-21 99.0
Msa0396070 MtrunA17_Chr4g0042421 25.417 539 304 23 24 495 17 524 1.47e-21 98.2
Msa0396070 MtrunA17_Chr2g0280711 24.085 519 323 18 42 495 38 550 3.49e-21 97.4
Msa0396070 MtrunA17_Chr8g0361431 25.553 497 307 17 32 495 38 504 5.42e-21 96.7
Msa0396070 MtrunA17_Chr7g0236551 22.287 516 324 16 27 495 23 508 1.02e-20 95.9
Msa0396070 MtrunA17_Chr8g0361441 24.190 525 311 24 32 495 28 526 1.03e-20 95.9
Msa0396070 MtrunA17_Chr4g0042341 25.000 544 297 25 32 492 25 540 1.14e-20 95.9
Msa0396070 MtrunA17_Chr4g0042391 23.551 535 287 21 10 491 4 469 3.02e-20 94.4
Msa0396070 MtrunA17_Chr2g0318841 24.390 533 338 19 11 495 6 521 3.66e-20 94.4
Msa0396070 MtrunA17_Chr2g0280791 24.444 495 263 21 80 492 73 538 4.57e-20 94.0
Msa0396070 MtrunA17_Chr3g0078521 25.181 552 322 23 11 495 11 538 5.35e-20 93.6
Msa0396070 MtrunA17_Chr3g0078531 25.678 553 316 26 10 495 22 546 1.55e-19 92.4
Msa0396070 MtrunA17_Chr3g0084441 22.945 523 320 19 28 492 26 523 2.94e-19 91.3
Msa0396070 MtrunA17_Chr7g0236561 22.476 525 313 18 45 495 21 525 3.67e-19 90.9
Msa0396070 MtrunA17_Chr7g0236161 24.797 492 285 21 45 495 43 490 4.28e-19 90.9
Msa0396070 MtrunA17_Chr7g0236201 24.797 492 285 21 45 495 43 490 4.96e-19 90.5
Msa0396070 MtrunA17_Chr3g0084451 23.495 515 327 18 28 492 26 523 1.08e-18 89.7
Msa0396070 MtrunA17_Chr8g0361151 30.455 220 135 7 6 214 3 215 1.13e-18 88.2
Msa0396070 MtrunA17_Chr4g0042441 29.880 251 167 7 10 253 3 251 1.16e-18 89.4
Msa0396070 MtrunA17_Chr8g0361311 24.877 406 236 15 27 376 20 412 1.30e-18 88.2
Msa0396070 MtrunA17_Chr8g0360201 24.654 434 260 19 115 495 7 426 2.19e-18 88.6
Msa0396070 MtrunA17_Chr7g0236231 23.133 549 298 25 25 495 36 538 3.17e-18 88.2
Msa0396070 MtrunA17_Chr2g0280731 23.720 586 329 25 5 495 8 570 5.85e-18 87.4
Msa0396070 MtrunA17_Chr4g0020081 23.048 538 331 19 21 495 14 531 8.55e-18 86.7
Msa0396070 MtrunA17_Chr4g0042381 23.992 496 264 19 45 491 38 469 1.32e-16 82.8
Msa0396070 MtrunA17_Chr4g0042351 23.408 534 289 17 10 491 4 469 2.53e-16 82.0
Msa0396070 MtrunA17_Chr4g0055021 30.366 191 122 6 32 217 28 212 7.65e-16 79.7
Msa0396070 MtrunA17_Chr4g0023071 24.259 540 318 22 10 495 13 515 1.09e-15 80.1
Msa0396070 MtrunA17_Chr2g0280801 21.390 561 341 22 9 492 7 544 1.18e-15 80.1
Msa0396070 MtrunA17_Chr3g0084691 23.561 556 337 21 8 492 6 544 1.28e-15 80.1
Msa0396070 MtrunA17_Chr4g0048651 29.412 238 153 8 22 250 38 269 1.40e-15 79.3
Msa0396070 MtrunA17_Chr4g0048691 23.383 402 234 15 22 361 38 427 2.55e-15 78.6
Msa0396070 MtrunA17_Chr7g0236691 31.053 190 121 5 32 217 28 211 3.53e-15 78.6
Msa0396070 MtrunA17_Chr4g0048681 27.434 226 141 7 281 495 91 304 6.12e-14 74.3
Msa0396070 MtrunA17_Chr2g0280841 22.571 350 193 13 80 366 79 413 8.50e-14 73.6
Msa0396070 MtrunA17_Chr7g0236651 30.508 177 113 5 45 217 39 209 1.07e-13 73.9
Msa0396070 MtrunA17_Chr7g0236121 27.619 210 143 6 45 251 43 246 1.10e-13 73.9
Msa0396070 MtrunA17_Chr2g0280771 22.140 542 322 20 11 495 4 502 1.17e-13 73.6
Msa0396070 MtrunA17_Chr7g0236641 29.944 177 114 5 45 217 41 211 5.03e-13 71.6
Msa0396070 MtrunA17_Chr8g0340061 25.000 236 165 7 26 256 24 252 6.72e-13 70.9
Msa0396070 MtrunA17_Chr8g0340091 21.622 518 336 19 12 492 64 548 7.48e-13 71.2
Msa0396070 MtrunA17_Chr3g0084651 23.500 400 238 16 22 363 14 403 1.07e-12 70.1
Msa0396070 MtrunA17_Chr8g0348661 25.786 477 256 27 80 495 66 505 2.74e-12 69.3
Msa0396070 MtrunA17_Chr7g0236341 30.526 190 122 5 32 217 28 211 3.87e-12 68.9
Msa0396070 MtrunA17_Chr6g0453581 29.070 172 107 5 11 172 3 169 7.78e-12 63.9
Msa0396070 MtrunA17_Chr7g0236521 28.249 177 117 5 45 217 21 191 1.75e-11 65.9
Msa0396070 MtrunA17_Chr4g0042361 28.099 242 144 11 32 255 60 289 2.22e-11 66.6
Msa0396070 MtrunA17_Chr3g0078541 28.934 197 122 5 32 210 38 234 4.53e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0396070 AT5G18470.1 31.183 372 226 11 11 353 11 381 3.46e-39 147
Msa0396070 AT1G67520.1 27.755 490 254 15 32 495 25 440 9.94e-32 129
Msa0396070 AT1G11410.3 24.060 532 318 19 32 495 5 518 3.96e-31 128
Msa0396070 AT1G11410.1 24.105 531 317 19 33 495 30 542 4.37e-31 128
Msa0396070 AT1G11410.4 24.105 531 317 19 33 495 37 549 5.29e-31 127
Msa0396070 AT3G16030.3 26.061 495 275 16 80 495 85 567 6.93e-31 127
Msa0396070 AT3G16030.8 26.061 495 275 16 80 495 85 567 6.93e-31 127
Msa0396070 AT3G16030.5 26.061 495 275 16 80 495 85 567 6.93e-31 127
Msa0396070 AT3G16030.4 26.176 489 282 14 80 495 85 567 1.02e-30 126
Msa0396070 AT3G16030.7 26.789 489 279 15 80 495 85 567 1.21e-30 126
Msa0396070 AT3G16030.1 27.037 540 300 18 32 495 25 546 1.27e-30 126
Msa0396070 AT3G16030.6 26.789 489 279 15 80 495 85 567 1.37e-30 126
Msa0396070 AT1G67520.2 27.096 513 297 17 32 492 25 512 3.41e-30 125
Msa0396070 AT1G67520.3 26.706 513 299 15 32 492 25 512 5.26e-30 124
Msa0396070 AT1G67520.6 26.706 513 299 15 32 492 32 519 5.55e-30 124
Msa0396070 AT1G11340.2 24.386 529 321 21 32 495 88 602 8.82e-30 124
Msa0396070 AT1G11340.3 24.386 529 321 21 32 495 88 602 1.00e-29 124
Msa0396070 AT1G67520.4 26.587 504 268 16 32 492 25 469 1.08e-28 120
Msa0396070 AT1G11410.2 24.884 430 252 15 127 495 8 427 3.66e-28 119
Msa0396070 AT4G27290.2 25.000 544 320 19 17 495 10 530 4.59e-27 115
Msa0396070 AT4G21380.2 25.385 520 312 20 39 495 39 545 1.11e-26 114
Msa0396070 AT4G21380.1 26.977 430 240 18 127 495 129 545 1.89e-26 114
Msa0396070 AT1G61610.2 25.664 565 311 23 8 492 6 541 2.90e-26 113
Msa0396070 AT1G61610.1 25.664 565 311 23 8 492 6 541 3.42e-26 113
Msa0396070 AT4G21390.2 25.360 556 324 25 11 495 13 548 8.75e-25 108
Msa0396070 AT4G21390.1 25.360 556 324 25 11 495 13 548 9.06e-25 108
Msa0396070 AT1G65790.3 24.528 530 299 23 39 495 37 538 2.30e-24 107
Msa0396070 AT1G65790.2 24.528 530 299 23 39 495 37 538 2.30e-24 107
Msa0396070 AT1G65790.1 25.000 524 304 22 39 495 37 538 5.71e-24 106
Msa0396070 AT3G12000.1 26.371 383 217 17 39 364 42 416 1.53e-23 103
Msa0396070 AT1G65800.2 23.872 532 334 19 24 495 22 542 1.68e-22 101
Msa0396070 AT1G65800.1 23.573 543 322 20 24 495 22 542 4.26e-22 100
Msa0396070 AT3G16030.2 25.178 421 238 12 147 495 8 423 2.95e-21 97.8
Msa0396070 AT4G27290.1 24.349 538 285 20 17 495 10 484 3.35e-21 97.8
Msa0396070 AT4G11900.1 26.761 426 228 22 128 495 157 556 8.89e-21 96.7
Msa0396070 AT4G11900.10 26.291 426 230 20 128 495 157 556 9.50e-21 96.3
Msa0396070 AT4G11900.5 26.291 426 230 20 128 495 157 556 9.50e-21 96.3
Msa0396070 AT4G11900.2 26.291 426 230 20 128 495 157 556 9.75e-21 96.3
Msa0396070 AT4G11900.3 26.291 426 230 20 128 495 157 556 9.75e-21 96.3
Msa0396070 AT4G11900.6 26.291 426 230 20 128 495 157 556 9.83e-21 96.3
Msa0396070 AT4G11900.4 26.291 426 230 20 128 495 157 556 9.83e-21 96.3
Msa0396070 AT4G11900.8 26.291 426 230 20 128 495 88 487 1.09e-20 95.9
Msa0396070 AT4G11900.7 26.761 426 228 22 128 495 157 556 1.11e-20 96.3
Msa0396070 AT4G11900.9 26.761 426 228 22 128 495 88 487 1.21e-20 95.9
Msa0396070 AT1G61380.1 24.307 469 269 18 78 492 68 504 1.40e-20 95.9
Msa0396070 AT1G61480.1 24.308 506 301 18 45 495 37 515 7.97e-20 93.6
Msa0396070 AT1G11280.3 23.792 538 322 23 11 495 10 512 1.24e-19 92.8
Msa0396070 AT1G61400.1 23.247 542 324 17 7 495 17 519 1.28e-19 92.8
Msa0396070 AT1G11280.4 23.792 538 322 23 11 495 20 522 1.36e-19 92.8
Msa0396070 AT1G61400.2 23.247 542 324 17 7 495 17 519 1.37e-19 92.8
Msa0396070 AT1G11280.5 23.234 538 337 22 11 495 10 524 1.39e-19 92.4
Msa0396070 AT1G11280.2 23.234 538 337 22 11 495 10 524 1.81e-19 92.4
Msa0396070 AT1G11280.1 23.234 538 337 22 11 495 20 534 1.82e-19 92.4
Msa0396070 AT1G61370.1 23.529 510 304 22 45 495 38 520 7.31e-19 90.5
Msa0396070 AT4G27300.1 25.430 523 306 22 27 495 27 519 7.51e-19 90.5
Msa0396070 AT2G19130.1 23.017 517 317 17 32 495 24 512 8.97e-18 87.0
Msa0396070 AT1G11340.1 28.311 219 136 8 290 495 324 534 5.85e-17 84.7
Msa0396070 AT1G11340.1 27.273 231 157 8 32 255 20 246 2.07e-15 79.7
Msa0396070 AT1G61460.1 25.738 474 291 22 45 495 38 473 8.86e-15 77.8
Msa0396070 AT1G11300.2 27.119 177 114 6 80 247 77 247 6.55e-12 68.6
Msa0396070 AT1G11300.1 27.119 177 114 6 80 247 77 247 6.72e-12 68.6
Msa0396070 AT1G11330.3 24.444 225 158 5 1 217 2 222 1.00e-11 67.8
Msa0396070 AT1G11330.2 24.444 225 158 5 1 217 2 222 1.26e-11 67.8
Msa0396070 AT1G11330.1 24.444 225 158 5 1 217 2 222 1.30e-11 67.8
Msa0396070 AT1G61370.2 23.720 371 205 18 181 495 21 369 4.02e-11 65.9
Msa0396070 AT1G11303.1 27.528 178 112 7 80 247 77 247 5.37e-11 65.9
Msa0396070 AT1G11350.1 30.070 143 92 4 80 217 72 211 5.45e-11 65.9

Find 97 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGAATTATAAGAAGATTTC+AGG 0.170910 3_2:-13788622 Msa0396070:CDS
AGTGGCCAAAGTGTTGTTTA+TGG 0.229750 3_2:+13789023 None:intergenic
TCCCATTACGATAAAATTCT+TGG 0.233105 3_2:+13788338 None:intergenic
ATAAGTGTTAATGCAGATTA+TGG 0.290805 3_2:-13789180 Msa0396070:CDS
TATTATGCCCACTCATTATA+TGG 0.294790 3_2:-13786542 Msa0396070:CDS
ATGTTCAGTTCACCTTGTTT+TGG 0.316207 3_2:+13788793 None:intergenic
ACTCCTTCGCGGACAACTTC+AGG 0.336372 3_2:-13788838 Msa0396070:CDS
ACCTACGTACCATGGGAATT+TGG 0.341141 3_2:+13788220 None:intergenic
AGTGATGAAGGGACTTATAT+TGG 0.345225 3_2:-13788568 Msa0396070:CDS
AGGCTATGGACCTGTTTATA+AGG 0.348699 3_2:-13786226 Msa0396070:CDS
ATAAATTACTATAACAATTA+CGG 0.352277 3_2:-13786105 Msa0396070:three_prime_UTR
TAATGCAGATTATGGCATTC+AGG 0.353322 3_2:-13789172 Msa0396070:CDS
ATTGAACAGGATGTGACTTA+TGG 0.368230 3_2:-13788412 Msa0396070:CDS
TTCGACACAAGATCTTGATT+TGG 0.384752 3_2:-13788290 Msa0396070:CDS
GTTGATGCATTGTCTATGTT+TGG 0.386981 3_2:+13788436 None:intergenic
AACACAGTCTTTGACCCGTT+GGG 0.389862 3_2:+13788961 None:intergenic
GGAAGGTAACAACAATGATT+TGG 0.400241 3_2:-13786373 Msa0396070:CDS
TGGATTATTCGAGAATATTC+CGG 0.400900 3_2:-13788722 Msa0396070:CDS
GGGAGGATAAACCAACTTGC+AGG 0.400993 3_2:-13788495 Msa0396070:CDS
TTCAAGATCTTTGATATCAT+AGG 0.402775 3_2:+13786344 None:intergenic
GTGGCCAAAGTGTTGTTTAT+GGG 0.406994 3_2:+13789024 None:intergenic
CTGGATGTATATTCTATTCA+TGG 0.409800 3_2:-13788315 Msa0396070:CDS
TTCAACAATTTCACCCCAAC+GGG 0.410491 3_2:-13788975 Msa0396070:CDS
TATAAAGTCACCTTATAAAC+AGG 0.413060 3_2:+13786216 None:intergenic
TTGGTAAACTCTACAAAATC+AGG 0.420455 3_2:-13788244 Msa0396070:CDS
TTTGGTTATGTAGATAAGAA+AGG 0.429165 3_2:-13786405 Msa0396070:intron
TTGATCCCAACGATGAAGTT+AGG 0.431052 3_2:-13788907 Msa0396070:CDS
AACTGCTGAATTTAAGTCAA+TGG 0.436192 3_2:+13789125 None:intergenic
AGAAAAGCGGCAAAGTGTAT+TGG 0.437684 3_2:-13788768 Msa0396070:CDS
ATCTTTAATTTCAAAAGTAA+AGG 0.438947 3_2:+13788645 None:intergenic
TAATGCCTAACTTCATCGTT+GGG 0.448367 3_2:+13788902 None:intergenic
AAGAAAGGTAAAAGAAAGGA+AGG 0.457337 3_2:-13786390 Msa0396070:CDS
CAATGCATCAACCATTGAAC+AGG 0.460499 3_2:-13788425 Msa0396070:CDS
ATGTGGTAATATTGTTCCTA+TGG 0.462144 3_2:-13786050 Msa0396070:three_prime_UTR
AAGTTAGGACAGGGAGGCTA+TGG 0.474937 3_2:-13786240 Msa0396070:CDS
TATTGATATACCTATGGTTG+TGG 0.483408 3_2:-13789356 Msa0396070:CDS
TTTCAGGGTGGACACTAGAC+TGG 0.486362 3_2:-13788606 Msa0396070:CDS
GTTTCCTGTGTCTAATATAG+TGG 0.488840 3_2:+13789005 None:intergenic
GGGATGCTAACGAGTGATGA+AGG 0.496628 3_2:-13788580 Msa0396070:CDS
AGATCTTGAAGATGACTTCA+AGG 0.498652 3_2:-13786331 Msa0396070:CDS
ACCTGAAAACAAGTTAGGAC+AGG 0.498655 3_2:-13786250 Msa0396070:CDS
GGAAATGCAGACATGTGTTA+TGG 0.503986 3_2:-13788547 Msa0396070:CDS
AAACCAACTTGCAGGGAACC+TGG 0.512863 3_2:-13788487 Msa0396070:CDS
GTTGGGATCAAAACATCTGC+TGG 0.513199 3_2:+13788919 None:intergenic
TTAATGCCTAACTTCATCGT+TGG 0.514729 3_2:+13788901 None:intergenic
AGATAAGAAAGGTAAAAGAA+AGG 0.516586 3_2:-13786394 Msa0396070:CDS
AAGTTGTATTGATATACCTA+TGG 0.522610 3_2:-13789362 Msa0396070:CDS
AGTGGAAAACTTAAAAGCAA+TGG 0.524344 3_2:-13788742 Msa0396070:CDS
CAGGTGAATTTAGTCTTGAG+TGG 0.526510 3_2:-13788819 Msa0396070:CDS
GGTAATATTGTTCCTATGGT+TGG 0.530991 3_2:-13786046 Msa0396070:intron
AGGTGAATTTAGTCTTGAGT+GGG 0.537860 3_2:-13788818 Msa0396070:CDS
ATAAGTCACATCCTGTTCAA+TGG 0.543165 3_2:+13788414 None:intergenic
GGAATTATAAGAAGATTTCA+GGG 0.543828 3_2:-13788621 Msa0396070:CDS
TATGGATATAATAGTGATGG+AGG 0.546828 3_2:-13788529 Msa0396070:CDS
TCGCTAGCCATATAATGAGT+GGG 0.547122 3_2:+13786535 None:intergenic
GGGTGGACACTAGACTGGGC+GGG 0.547821 3_2:-13788601 Msa0396070:CDS
TGAGAGCGAAGATGCTCACT+TGG 0.550804 3_2:-13789205 Msa0396070:CDS
GGTGGACACTAGACTGGGCG+GGG 0.551672 3_2:-13788600 Msa0396070:CDS
AAAGTGTTGTTTATGGGTTG+AGG 0.553598 3_2:+13789030 None:intergenic
GTGATTGCAAGATGAGATGT+TGG 0.556493 3_2:-13788384 Msa0396070:CDS
TTCGCTAGCCATATAATGAG+TGG 0.557642 3_2:+13786534 None:intergenic
TCAACCCATAAACAACACTT+TGG 0.558589 3_2:-13789028 Msa0396070:CDS
GGCAAAGTGTATTGGAAAAG+TGG 0.564255 3_2:-13788760 Msa0396070:CDS
TGTCATGGTTGACTCCTTCG+CGG 0.576738 3_2:-13788849 Msa0396070:CDS
CAACACAGTCTTTGACCCGT+TGG 0.578467 3_2:+13788960 None:intergenic
TCACCAGGTTCCCTGCAAGT+TGG 0.578509 3_2:+13788484 None:intergenic
ACGAAAGATAGTTTGAAGCC+AGG 0.579732 3_2:-13789300 Msa0396070:CDS
CTTCAACAATTTCACCCCAA+CGG 0.583302 3_2:-13788976 Msa0396070:CDS
TAGTACTCCACCACAACCAT+AGG 0.583738 3_2:+13789346 None:intergenic
AGGTAACAACAATGATTTGG+CGG 0.584496 3_2:-13786370 Msa0396070:CDS
TGATATACCTATGGTTGTGG+TGG 0.588754 3_2:-13789353 Msa0396070:CDS
GATCTTGAAGATGACTTCAA+GGG 0.590398 3_2:-13786330 Msa0396070:CDS
ATAATTGGTCAGTGGTGTCA+TGG 0.592552 3_2:-13788864 Msa0396070:CDS
ACACAGTCTTTGACCCGTTG+GGG 0.597308 3_2:+13788962 None:intergenic
AACTTGCAGGGAACCTGGTG+AGG 0.601373 3_2:-13788482 Msa0396070:CDS
CTTGAGTGGGAACCAAAACA+AGG 0.602343 3_2:-13788805 Msa0396070:CDS
TGGAGAAATTGTAATTGCAG+TGG 0.607423 3_2:-13788364 Msa0396070:CDS
GTTCTATCACTAGACTACTC+TGG 0.611633 3_2:-13789105 Msa0396070:CDS
TGTTATGGATATAATAGTGA+TGG 0.613097 3_2:-13788532 Msa0396070:CDS
TTCAGGGTGGACACTAGACT+GGG 0.614928 3_2:-13788605 Msa0396070:CDS
TCACCTGAAGTTGTCCGCGA+AGG 0.615606 3_2:+13788835 None:intergenic
AAGCAATAATCACCAACCAT+AGG 0.619904 3_2:+13786034 None:intergenic
TTGGAATTAAATGTATCACC+TGG 0.625090 3_2:+13789282 None:intergenic
GGATGCTAACGAGTGATGAA+GGG 0.631022 3_2:-13788579 Msa0396070:CDS
CAGATTATGGCATTCAGGTG+TGG 0.632210 3_2:-13789167 Msa0396070:CDS
GGAGGATAAACCAACTTGCA+GGG 0.632461 3_2:-13788494 Msa0396070:CDS
CCTGAAAACAAGTTAGGACA+GGG 0.640924 3_2:-13786249 Msa0396070:CDS
TTGGCCACTATATTAGACAC+AGG 0.646110 3_2:-13789009 Msa0396070:CDS
AGGGTGGACACTAGACTGGG+CGG 0.646123 3_2:-13788602 Msa0396070:CDS
AACAGGACATAATTGGTCAG+TGG 0.646535 3_2:-13788872 Msa0396070:CDS
AAATCAGGACCAAATTCCCA+TGG 0.649771 3_2:-13788229 Msa0396070:intron
GAACTGAACATCAAGAAAAG+CGG 0.657705 3_2:-13788781 Msa0396070:CDS
ATGGATATAATAGTGATGGA+GGG 0.710491 3_2:-13788528 Msa0396070:CDS
ACGGGTCAAAGACTGTGTTG+TGG 0.714726 3_2:-13788957 Msa0396070:CDS
GTACATTATTGTCTCTAACG+AGG 0.733109 3_2:-13788677 Msa0396070:CDS
ATTATAAGAAGATTTCAGGG+TGG 0.737332 3_2:-13788618 Msa0396070:CDS
GAAAACAAGTTAGGACAGGG+AGG 0.741293 3_2:-13786246 Msa0396070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAAAAATGAATATTAAAA+AGG + chr3_2:13787678-13787697 None:intergenic 10.0%
!!! ATTTAAAATGAAAATGTATT+CGG + chr3_2:13788005-13788024 None:intergenic 10.0%
!!! TAAAAATCATATTTAAAATG+AGG - chr3_2:13788667-13788686 Msa0396070:CDS 10.0%
!! ATACAGTAAAAAAAAAAATT+TGG - chr3_2:13789205-13789224 Msa0396070:CDS 10.0%
!! TACAGTAAAAAAAAAAATTT+GGG - chr3_2:13789206-13789225 Msa0396070:CDS 10.0%
!! ATAAATTACTATAACAATTA+CGG - chr3_2:13789290-13789309 Msa0396070:CDS 10.0%
!!! ATCTTTAATTTCAAAAGTAA+AGG + chr3_2:13786753-13786772 None:intergenic 15.0%
!!! TTACTTTTGAAATTAAAGAT+CGG - chr3_2:13786753-13786772 Msa0396070:intron 15.0%
!! TAATATCATATTAACAAGAT+CGG - chr3_2:13787201-13787220 Msa0396070:intron 15.0%
!! ATGAATATTAAAAAGGTTAT+GGG + chr3_2:13787671-13787690 None:intergenic 15.0%
!! AATGAATATTAAAAAGGTTA+TGG + chr3_2:13787672-13787691 None:intergenic 15.0%
!! ATAATAAAAGTTTGTGAAAA+TGG + chr3_2:13788543-13788562 None:intergenic 15.0%
!!! ATAATTTTCTCTATATTTGT+AGG + chr3_2:13788581-13788600 None:intergenic 15.0%
!! AAAGATAGATAGAAAATAAA+AGG + chr3_2:13788960-13788979 None:intergenic 15.0%
!!! TTTTAGCTATAAATCAATTT+TGG - chr3_2:13789103-13789122 Msa0396070:CDS 15.0%
!!! AACATATATGCATTTTTTTT+AGG - chr3_2:13789391-13789410 Msa0396070:exon 15.0%
!! ACAAAACAAAAAAACGTTAA+GGG + chr3_2:13787909-13787928 None:intergenic 20.0%
!! AACAAAACAAAAAAACGTTA+AGG + chr3_2:13787910-13787929 None:intergenic 20.0%
!!! AACGTTTTTTTGTTTTGTTT+TGG - chr3_2:13787911-13787930 Msa0396070:intron 20.0%
!!! TATAAACTTAGTTTTTTCAG+GGG + chr3_2:13788058-13788077 None:intergenic 20.0%
!!! CTATAAACTTAGTTTTTTCA+GGG + chr3_2:13788059-13788078 None:intergenic 20.0%
!!! TCTATAAACTTAGTTTTTTC+AGG + chr3_2:13788060-13788079 None:intergenic 20.0%
!! CATAATTATCTTGATATACT+GGG + chr3_2:13788343-13788362 None:intergenic 20.0%
!! ACATAATTATCTTGATATAC+TGG + chr3_2:13788344-13788363 None:intergenic 20.0%
!!! GGATTTTGAATTAGAAATAT+AGG - chr3_2:13788688-13788707 Msa0396070:CDS 20.0%
!!! AAATTGATTTTGTATAATGC+AGG - chr3_2:13788780-13788799 Msa0396070:CDS 20.0%
!! TAGATAGAAAATAAAAGGAT+TGG + chr3_2:13788955-13788974 None:intergenic 20.0%
!!! CTATCTTTATCTTCTTTTTT+TGG - chr3_2:13788972-13788991 Msa0396070:CDS 20.0%
!!! ATTTTTTTGCAAAATGAAGA+TGG + chr3_2:13789318-13789337 None:intergenic 20.0%
!! AAGTTGTATTGATATACCTA+TGG - chr3_2:13786033-13786052 Msa0396070:intron 25.0%
! ATAAGTGTTAATGCAGATTA+TGG - chr3_2:13786215-13786234 Msa0396070:CDS 25.0%
!! CTGATACATATTTTGTACAT+TGG + chr3_2:13786699-13786718 None:intergenic 25.0%
! GGAATTATAAGAAGATTTCA+GGG - chr3_2:13786774-13786793 Msa0396070:intron 25.0%
! TGTTATGGATATAATAGTGA+TGG - chr3_2:13786863-13786882 Msa0396070:intron 25.0%
!! TTCCAAGAATTTTATCGTAA+TGG - chr3_2:13787055-13787074 Msa0396070:intron 25.0%
!! TCCAAGAATTTTATCGTAAT+GGG - chr3_2:13787056-13787075 Msa0396070:intron 25.0%
! CAGAGTGATTATTTACAAAT+TGG - chr3_2:13787226-13787245 Msa0396070:intron 25.0%
! TAATTCATGCATTAGGATAT+TGG - chr3_2:13787266-13787285 Msa0396070:intron 25.0%
! TTAAACAAGCAGTAAATAAC+CGG + chr3_2:13787446-13787465 None:intergenic 25.0%
! AACATAATCACTTATACAAG+TGG - chr3_2:13787477-13787496 Msa0396070:intron 25.0%
! ACATAATCACTTATACAAGT+GGG - chr3_2:13787478-13787497 Msa0396070:intron 25.0%
! ATAGCTTACTATACTTGATA+AGG + chr3_2:13787586-13787605 None:intergenic 25.0%
!! ACATTAAGCATTTTCCTTAT+AGG + chr3_2:13787753-13787772 None:intergenic 25.0%
! TTCATGAATCAACTGATAAT+TGG - chr3_2:13787840-13787859 Msa0396070:intron 25.0%
! TAAAGAGAAAGGAAAATACA+CGG + chr3_2:13788180-13788199 None:intergenic 25.0%
! AAGATAATTATGTGACTATC+TGG - chr3_2:13788351-13788370 Msa0396070:CDS 25.0%
! AGATAATTATGTGACTATCT+GGG - chr3_2:13788352-13788371 Msa0396070:CDS 25.0%
!! ATTTATTCTTCCTTTTCCTA+AGG + chr3_2:13788466-13788485 None:intergenic 25.0%
! AGAAAATTATGAGTTGTTGA+CGG - chr3_2:13788591-13788610 Msa0396070:CDS 25.0%
! TGAATTAGAAATATAGGACT+AGG - chr3_2:13788694-13788713 Msa0396070:CDS 25.0%
! GAATTAGAAATATAGGACTA+GGG - chr3_2:13788695-13788714 Msa0396070:CDS 25.0%
!!! CATCTCAAACTTTTAGTTTT+TGG + chr3_2:13788739-13788758 None:intergenic 25.0%
! TTGAAAATAGTATAGTACGT+AGG - chr3_2:13788922-13788941 Msa0396070:CDS 25.0%
! TTTGGTTATGTAGATAAGAA+AGG - chr3_2:13788990-13789009 Msa0396070:CDS 25.0%
! AGATAAGAAAGGTAAAAGAA+AGG - chr3_2:13789001-13789020 Msa0396070:CDS 25.0%
! TTCAAGATCTTTGATATCAT+AGG + chr3_2:13789054-13789073 None:intergenic 25.0%
! TATAAAGTCACCTTATAAAC+AGG + chr3_2:13789182-13789201 None:intergenic 25.0%
!! GCAAAAAAATGTTTCTAATG+TGG - chr3_2:13789328-13789347 Msa0396070:CDS 25.0%
TATTGATATACCTATGGTTG+TGG - chr3_2:13786039-13786058 Msa0396070:intron 30.0%
TTGGAATTAAATGTATCACC+TGG + chr3_2:13786116-13786135 None:intergenic 30.0%
!! TTTTGAAAATAGCGTGGAAT+TGG + chr3_2:13786135-13786154 None:intergenic 30.0%
AACTGCTGAATTTAAGTCAA+TGG + chr3_2:13786273-13786292 None:intergenic 30.0%
! GGTGAAGAGTAAATGATTTT+TGG + chr3_2:13786347-13786366 None:intergenic 30.0%
TTAGGCATTAATCGAAAAAC+AGG - chr3_2:13786506-13786525 Msa0396070:intron 30.0%
ATCGAAAAACAGGACATAAT+TGG - chr3_2:13786516-13786535 Msa0396070:CDS 30.0%
AGTGGAAAACTTAAAAGCAA+TGG - chr3_2:13786653-13786672 Msa0396070:intron 30.0%
TGGATTATTCGAGAATATTC+CGG - chr3_2:13786673-13786692 Msa0396070:intron 30.0%
! TACATATTTTGTACATTGGC+CGG + chr3_2:13786695-13786714 None:intergenic 30.0%
CGGAATTATAAGAAGATTTC+AGG - chr3_2:13786773-13786792 Msa0396070:intron 30.0%
ATTATAAGAAGATTTCAGGG+TGG - chr3_2:13786777-13786796 Msa0396070:intron 30.0%
TATGGATATAATAGTGATGG+AGG - chr3_2:13786866-13786885 Msa0396070:intron 30.0%
! ATGGATATAATAGTGATGGA+GGG - chr3_2:13786867-13786886 Msa0396070:intron 30.0%
TCCCATTACGATAAAATTCT+TGG + chr3_2:13787060-13787079 None:intergenic 30.0%
CTGGATGTATATTCTATTCA+TGG - chr3_2:13787080-13787099 Msa0396070:intron 30.0%
! TGATTTTGTAGAGTTTACCA+AGG + chr3_2:13787152-13787171 None:intergenic 30.0%
TTGGTAAACTCTACAAAATC+AGG - chr3_2:13787151-13787170 Msa0396070:intron 30.0%
!! CATGAATTAAGTTGACTGTT+CGG + chr3_2:13787255-13787274 None:intergenic 30.0%
GTCAACTTAATTCATGCATT+AGG - chr3_2:13787259-13787278 Msa0396070:intron 30.0%
ACAGTTTGATCATGATCAAA+CGG + chr3_2:13787378-13787397 None:intergenic 30.0%
TTGAATGCGTGAAAAACTAA+CGG - chr3_2:13787406-13787425 Msa0396070:intron 30.0%
GAGTTATCAAAATGACTTTG+AGG - chr3_2:13787543-13787562 Msa0396070:intron 30.0%
TTAAAAAGGTTATGGGATGT+GGG + chr3_2:13787664-13787683 None:intergenic 30.0%
ATTAAAAAGGTTATGGGATG+TGG + chr3_2:13787665-13787684 None:intergenic 30.0%
! TCTTCCTCCAATTTTCAAAT+AGG - chr3_2:13787723-13787742 Msa0396070:intron 30.0%
AAAGCCTATTTGAAAATTGG+AGG + chr3_2:13787730-13787749 None:intergenic 30.0%
AGGAAAGCCTATTTGAAAAT+TGG + chr3_2:13787733-13787752 None:intergenic 30.0%
TTCAAATAGGCTTTCCTATA+AGG - chr3_2:13787736-13787755 Msa0396070:intron 30.0%
! GCTTAATGTCACGAATTTTT+CGG - chr3_2:13787764-13787783 Msa0396070:intron 30.0%
GTACATGAAGACAAATTTGT+GGG - chr3_2:13787955-13787974 Msa0396070:intron 30.0%
TACATGAAGACAAATTTGTG+GGG - chr3_2:13787956-13787975 Msa0396070:intron 30.0%
AAAATGAAAATGTATTCGGC+AGG + chr3_2:13788001-13788020 None:intergenic 30.0%
TTTGCATTCACGATATATAG+CGG - chr3_2:13788126-13788145 Msa0396070:intron 30.0%
CATTTACTCAAAGTAACCTT+AGG - chr3_2:13788447-13788466 Msa0396070:CDS 30.0%
AGGAAGAATAAATCAATCTG+AGG - chr3_2:13788473-13788492 Msa0396070:CDS 30.0%
GGAAGAATAAATCAATCTGA+GGG - chr3_2:13788474-13788493 Msa0396070:CDS 30.0%
GTTAGACATGAAAATGTCAT+TGG - chr3_2:13788496-13788515 Msa0396070:CDS 30.0%
!! AAAATGGATTGCGAATTGTA+TGG + chr3_2:13788527-13788546 None:intergenic 30.0%
ATAATGCAGGTAAAAAACAG+TGG - chr3_2:13788793-13788812 Msa0396070:CDS 30.0%
TATTATGCCCACTCATTATA+TGG - chr3_2:13788853-13788872 Msa0396070:CDS 30.0%
AAACAAAAATATGCGCTACA+AGG - chr3_2:13788888-13788907 Msa0396070:CDS 30.0%
AAGAAAGGTAAAAGAAAGGA+AGG - chr3_2:13789005-13789024 Msa0396070:CDS 30.0%
!! ATCAATTTTGGAAGCAACTA+TGG - chr3_2:13789115-13789134 Msa0396070:CDS 30.0%
! TTTTCACCTGAAAACAAGTT+AGG - chr3_2:13789140-13789159 Msa0396070:CDS 30.0%
ATGTGGTAATATTGTTCCTA+TGG - chr3_2:13789345-13789364 Msa0396070:CDS 30.0%
!! TCCACGCTATTTTCAAAACA+AGG - chr3_2:13786137-13786156 Msa0396070:three_prime_UTR 35.0%
TAATGCAGATTATGGCATTC+AGG - chr3_2:13786223-13786242 Msa0396070:CDS 35.0%
!! AAAGTGTTGTTTATGGGTTG+AGG + chr3_2:13786368-13786387 None:intergenic 35.0%
TCAACCCATAAACAACACTT+TGG - chr3_2:13786367-13786386 Msa0396070:CDS 35.0%
GTTTCCTGTGTCTAATATAG+TGG + chr3_2:13786393-13786412 None:intergenic 35.0%
TAATGCCTAACTTCATCGTT+GGG + chr3_2:13786496-13786515 None:intergenic 35.0%
TTAATGCCTAACTTCATCGT+TGG + chr3_2:13786497-13786516 None:intergenic 35.0%
!! AGGTGAATTTAGTCTTGAGT+GGG - chr3_2:13786577-13786596 Msa0396070:CDS 35.0%
!! ATGTTCAGTTCACCTTGTTT+TGG + chr3_2:13786605-13786624 None:intergenic 35.0%
GAACTGAACATCAAGAAAAG+CGG - chr3_2:13786614-13786633 Msa0396070:intron 35.0%
GTACATTATTGTCTCTAACG+AGG - chr3_2:13786718-13786737 Msa0396070:intron 35.0%
AGTGATGAAGGGACTTATAT+TGG - chr3_2:13786827-13786846 Msa0396070:intron 35.0%
! TTGGTTTATCCTCCCATTTT+TGG + chr3_2:13786895-13786914 None:intergenic 35.0%
!!! TTTTTTTGAAACACCTCACC+AGG + chr3_2:13786929-13786948 None:intergenic 35.0%
! GAGGTGTTTCAAAAAAAGAC+TGG - chr3_2:13786932-13786951 Msa0396070:intron 35.0%
GTTGATGCATTGTCTATGTT+TGG + chr3_2:13786962-13786981 None:intergenic 35.0%
ATAAGTCACATCCTGTTCAA+TGG + chr3_2:13786984-13787003 None:intergenic 35.0%
ATTGAACAGGATGTGACTTA+TGG - chr3_2:13786983-13787002 Msa0396070:intron 35.0%
TGGAGAAATTGTAATTGCAG+TGG - chr3_2:13787031-13787050 Msa0396070:intron 35.0%
!! GAATTTTATCGTAATGGGAC+TGG - chr3_2:13787061-13787080 Msa0396070:intron 35.0%
TTCGACACAAGATCTTGATT+TGG - chr3_2:13787105-13787124 Msa0396070:intron 35.0%
! TCAGAATAACTTTTACGCCT+TGG - chr3_2:13787132-13787151 Msa0396070:intron 35.0%
ATTATAGACCTACGTACCAT+GGG + chr3_2:13787185-13787204 None:intergenic 35.0%
TATTATAGACCTACGTACCA+TGG + chr3_2:13787186-13787205 None:intergenic 35.0%
GATAATTGGTCAAGATCTTC+AGG - chr3_2:13787854-13787873 Msa0396070:intron 35.0%
! TCAAGATCTTCAGGTTTATC+TGG - chr3_2:13787863-13787882 Msa0396070:intron 35.0%
! GCAAATCTATCTAAGCGTTT+TGG - chr3_2:13787933-13787952 Msa0396070:intron 35.0%
GGTACATGAAGACAAATTTG+TGG - chr3_2:13787954-13787973 Msa0396070:intron 35.0%
ACATGAAGACAAATTTGTGG+GGG - chr3_2:13787957-13787976 Msa0396070:intron 35.0%
! GGTGAAGCAAACAAATTTTC+AGG + chr3_2:13788159-13788178 None:intergenic 35.0%
GAGTGGATGATTAAAGAGAA+AGG + chr3_2:13788191-13788210 None:intergenic 35.0%
GTCGATAAAAGATAAGGAAG+AGG + chr3_2:13788216-13788235 None:intergenic 35.0%
GTGAAGGTCGATAAAAGATA+AGG + chr3_2:13788222-13788241 None:intergenic 35.0%
!!! TGTCGGTTTTCACAAATTAG+AGG - chr3_2:13788253-13788272 Msa0396070:CDS 35.0%
!! GTCGGTTTTCACAAATTAGA+GGG - chr3_2:13788254-13788273 Msa0396070:CDS 35.0%
! TCGGTTTTCACAAATTAGAG+GGG - chr3_2:13788255-13788274 Msa0396070:CDS 35.0%
TTCATAGTACTTGTGCGAAT+TGG + chr3_2:13788293-13788312 None:intergenic 35.0%
AAAACCATTCCTATCGCAAA+AGG - chr3_2:13788376-13788395 Msa0396070:CDS 35.0%
! AATTCCTTTTGCGATAGGAA+TGG + chr3_2:13788383-13788402 None:intergenic 35.0%
! CACAAAATTCCTTTTGCGAT+AGG + chr3_2:13788388-13788407 None:intergenic 35.0%
CTCAAAGTAACCTTAGGAAA+AGG - chr3_2:13788453-13788472 Msa0396070:CDS 35.0%
TCTGATGACTAAACTTGTGA+TGG - chr3_2:13788625-13788644 Msa0396070:CDS 35.0%
AATATGCGCTACAAGGTATA+CGG - chr3_2:13788895-13788914 Msa0396070:CDS 35.0%
GGAAGGTAACAACAATGATT+TGG - chr3_2:13789022-13789041 Msa0396070:CDS 35.0%
! AGGTAACAACAATGATTTGG+CGG - chr3_2:13789025-13789044 Msa0396070:CDS 35.0%
AGATCTTGAAGATGACTTCA+AGG - chr3_2:13789064-13789083 Msa0396070:CDS 35.0%
GATCTTGAAGATGACTTCAA+GGG - chr3_2:13789065-13789084 Msa0396070:CDS 35.0%
GGTAATATTGTTCCTATGGT+TGG - chr3_2:13789349-13789368 Msa0396070:CDS 35.0%
AAGCAATAATCACCAACCAT+AGG + chr3_2:13789364-13789383 None:intergenic 35.0%
!! TATGGTTGGTGATTATTGCT+TGG - chr3_2:13789363-13789382 Msa0396070:CDS 35.0%
!! ATGGTTGGTGATTATTGCTT+GGG - chr3_2:13789364-13789383 Msa0396070:CDS 35.0%
TGATATACCTATGGTTGTGG+TGG - chr3_2:13786042-13786061 Msa0396070:intron 40.0%
! ACGAAAGATAGTTTGAAGCC+AGG - chr3_2:13786095-13786114 Msa0396070:three_prime_UTR 40.0%
!!! GCCTTGTTTTGAAAATAGCG+TGG + chr3_2:13786141-13786160 None:intergenic 40.0%
GTTCTATCACTAGACTACTC+TGG - chr3_2:13786290-13786309 Msa0396070:CDS 40.0%
!! GTGGCCAAAGTGTTGTTTAT+GGG + chr3_2:13786374-13786393 None:intergenic 40.0%
!! AGTGGCCAAAGTGTTGTTTA+TGG + chr3_2:13786375-13786394 None:intergenic 40.0%
TTGGCCACTATATTAGACAC+AGG - chr3_2:13786386-13786405 Msa0396070:CDS 40.0%
CTTCAACAATTTCACCCCAA+CGG - chr3_2:13786419-13786438 Msa0396070:intron 40.0%
TTCAACAATTTCACCCCAAC+GGG - chr3_2:13786420-13786439 Msa0396070:intron 40.0%
TTGATCCCAACGATGAAGTT+AGG - chr3_2:13786488-13786507 Msa0396070:intron 40.0%
AACAGGACATAATTGGTCAG+TGG - chr3_2:13786523-13786542 Msa0396070:CDS 40.0%
! ATAATTGGTCAGTGGTGTCA+TGG - chr3_2:13786531-13786550 Msa0396070:CDS 40.0%
!! CAGGTGAATTTAGTCTTGAG+TGG - chr3_2:13786576-13786595 Msa0396070:CDS 40.0%
AGAAAAGCGGCAAAGTGTAT+TGG - chr3_2:13786627-13786646 Msa0396070:intron 40.0%
GGCAAAGTGTATTGGAAAAG+TGG - chr3_2:13786635-13786654 Msa0396070:intron 40.0%
GGAAATGCAGACATGTGTTA+TGG - chr3_2:13786848-13786867 Msa0396070:intron 40.0%
CAATGCATCAACCATTGAAC+AGG - chr3_2:13786970-13786989 Msa0396070:intron 40.0%
GTGATTGCAAGATGAGATGT+TGG - chr3_2:13787011-13787030 Msa0396070:intron 40.0%
AAATCAGGACCAAATTCCCA+TGG - chr3_2:13787166-13787185 Msa0396070:intron 40.0%
AACGGCAATGGAACATAATC+CGG - chr3_2:13787424-13787443 Msa0396070:intron 40.0%
! CTTCAGGTTTATCTGGTTGT+TGG - chr3_2:13787870-13787889 Msa0396070:intron 40.0%
! GGTTTATCTGGTTGTTGGTT+TGG - chr3_2:13787875-13787894 Msa0396070:intron 40.0%
AAGATAAGGAAGAGGTTGAG+TGG + chr3_2:13788208-13788227 None:intergenic 40.0%
GCAAATTGATACTTGCGCAT+CGG + chr3_2:13788316-13788335 None:intergenic 40.0%
CAGGTAAAAAACAGTGGATG+TGG - chr3_2:13788799-13788818 Msa0396070:CDS 40.0%
TCGCTAGCCATATAATGAGT+GGG + chr3_2:13788863-13788882 None:intergenic 40.0%
TTCGCTAGCCATATAATGAG+TGG + chr3_2:13788864-13788883 None:intergenic 40.0%
ACCTGAAAACAAGTTAGGAC+AGG - chr3_2:13789145-13789164 Msa0396070:CDS 40.0%
CCTGAAAACAAGTTAGGACA+GGG - chr3_2:13789146-13789165 Msa0396070:CDS 40.0%
AGGCTATGGACCTGTTTATA+AGG - chr3_2:13789169-13789188 Msa0396070:CDS 40.0%
TAGTACTCCACCACAACCAT+AGG + chr3_2:13786052-13786071 None:intergenic 45.0%
CAGATTATGGCATTCAGGTG+TGG - chr3_2:13786228-13786247 Msa0396070:CDS 45.0%
AACACAGTCTTTGACCCGTT+GGG + chr3_2:13786437-13786456 None:intergenic 45.0%
GTTGGGATCAAAACATCTGC+TGG + chr3_2:13786479-13786498 None:intergenic 45.0%
CTTGAGTGGGAACCAAAACA+AGG - chr3_2:13786590-13786609 Msa0396070:CDS 45.0%
GGATGCTAACGAGTGATGAA+GGG - chr3_2:13786816-13786835 Msa0396070:intron 45.0%
!! TGATGGAGGGTGCCAAAAAT+GGG - chr3_2:13786880-13786899 Msa0396070:intron 45.0%
GGAGGATAAACCAACTTGCA+GGG - chr3_2:13786901-13786920 Msa0396070:intron 45.0%
ACCAAATTCCCATGGTACGT+AGG - chr3_2:13787174-13787193 Msa0396070:intron 45.0%
ACCTACGTACCATGGGAATT+TGG + chr3_2:13787178-13787197 None:intergenic 45.0%
GCGTGAAAAACTAACGGCAA+TGG - chr3_2:13787412-13787431 Msa0396070:intron 45.0%
GAAGAATTCTCTTTGCCCGT+CGG + chr3_2:13787512-13787531 None:intergenic 45.0%
CGGTCACGAGAGATTCATAT+AGG - chr3_2:13787784-13787803 Msa0396070:intron 45.0%
TGAAGACAAATTTGTGGGGG+TGG - chr3_2:13787960-13787979 Msa0396070:intron 45.0%
GAAGACAAATTTGTGGGGGT+GGG - chr3_2:13787961-13787980 Msa0396070:intron 45.0%
TTATCGACCTTCACTCGTTG+TGG - chr3_2:13788228-13788247 Msa0396070:intron 45.0%
! CTTCACTCGTTGTGGTTTGT+CGG - chr3_2:13788236-13788255 Msa0396070:CDS 45.0%
!!! CCCTGTCCTAACTTGTTTTC+AGG + chr3_2:13789149-13789168 None:intergenic 45.0%
GAAAACAAGTTAGGACAGGG+AGG - chr3_2:13789149-13789168 Msa0396070:CDS 45.0%
TGAGAGCGAAGATGCTCACT+TGG - chr3_2:13786190-13786209 Msa0396070:three_prime_UTR 50.0%
ACACAGTCTTTGACCCGTTG+GGG + chr3_2:13786436-13786455 None:intergenic 50.0%
CAACACAGTCTTTGACCCGT+TGG + chr3_2:13786438-13786457 None:intergenic 50.0%
ACGGGTCAAAGACTGTGTTG+TGG - chr3_2:13786438-13786457 Msa0396070:intron 50.0%
! TGTCATGGTTGACTCCTTCG+CGG - chr3_2:13786546-13786565 Msa0396070:CDS 50.0%
TTTCAGGGTGGACACTAGAC+TGG - chr3_2:13786789-13786808 Msa0396070:intron 50.0%
TTCAGGGTGGACACTAGACT+GGG - chr3_2:13786790-13786809 Msa0396070:intron 50.0%
GGGATGCTAACGAGTGATGA+AGG - chr3_2:13786815-13786834 Msa0396070:intron 50.0%
!! GTGATGGAGGGTGCCAAAAA+TGG - chr3_2:13786879-13786898 Msa0396070:intron 50.0%
GGGAGGATAAACCAACTTGC+AGG - chr3_2:13786900-13786919 Msa0396070:intron 50.0%
AAACCAACTTGCAGGGAACC+TGG - chr3_2:13786908-13786927 Msa0396070:intron 50.0%
TGTGGGGGTGGGTATGAAAA+CGG - chr3_2:13787972-13787991 Msa0396070:intron 50.0%
CGACAAACCACAACGAGTGA+AGG + chr3_2:13788238-13788257 None:intergenic 50.0%
AAGTTAGGACAGGGAGGCTA+TGG - chr3_2:13789155-13789174 Msa0396070:CDS 50.0%
ACTCCTTCGCGGACAACTTC+AGG - chr3_2:13786557-13786576 Msa0396070:CDS 55.0%
TCACCTGAAGTTGTCCGCGA+AGG + chr3_2:13786563-13786582 None:intergenic 55.0%
!! TGGAGGGTGCCAAAAATGGG+AGG - chr3_2:13786883-13786902 Msa0396070:intron 55.0%
TCACCAGGTTCCCTGCAAGT+TGG + chr3_2:13786914-13786933 None:intergenic 55.0%
AACTTGCAGGGAACCTGGTG+AGG - chr3_2:13786913-13786932 Msa0396070:intron 55.0%
CAAGTGGGCATTCTCTCCGA+CGG - chr3_2:13787493-13787512 Msa0396070:intron 55.0%
AAGTGGGCATTCTCTCCGAC+GGG - chr3_2:13787494-13787513 Msa0396070:intron 55.0%
AGGGTGGACACTAGACTGGG+CGG - chr3_2:13786793-13786812 Msa0396070:intron 60.0%
GGGTGGACACTAGACTGGGC+GGG - chr3_2:13786794-13786813 Msa0396070:intron 65.0%
GGTGGACACTAGACTGGGCG+GGG - chr3_2:13786795-13786814 Msa0396070:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 13785964 13789453 13785964 ID=Msa0396070;Name=Msa0396070
chr3_2 mRNA 13785964 13789453 13785964 ID=Msa0396070-mRNA-1;Parent=Msa0396070;Name=Msa0396070-mRNA-1;_AED=0.08;_eAED=0.08;_QI=44|1|1|1|0.66|0.5|4|209|495
chr3_2 exon 13785964 13786004 13785964 ID=Msa0396070-mRNA-1:exon:3174;Parent=Msa0396070-mRNA-1
chr3_2 exon 13786047 13786414 13786047 ID=Msa0396070-mRNA-1:exon:3173;Parent=Msa0396070-mRNA-1
chr3_2 exon 13786508 13786615 13786508 ID=Msa0396070-mRNA-1:exon:3172;Parent=Msa0396070-mRNA-1
chr3_2 exon 13788230 13789453 13788230 ID=Msa0396070-mRNA-1:exon:3171;Parent=Msa0396070-mRNA-1
chr3_2 five_prime_UTR 13789410 13789453 13789410 ID=Msa0396070-mRNA-1:five_prime_utr;Parent=Msa0396070-mRNA-1
chr3_2 CDS 13788230 13789409 13788230 ID=Msa0396070-mRNA-1:cds;Parent=Msa0396070-mRNA-1
chr3_2 CDS 13786508 13786615 13786508 ID=Msa0396070-mRNA-1:cds;Parent=Msa0396070-mRNA-1
chr3_2 CDS 13786215 13786414 13786215 ID=Msa0396070-mRNA-1:cds;Parent=Msa0396070-mRNA-1
chr3_2 three_prime_UTR 13786047 13786214 13786047 ID=Msa0396070-mRNA-1:three_prime_utr;Parent=Msa0396070-mRNA-1
chr3_2 three_prime_UTR 13785964 13786004 13785964 ID=Msa0396070-mRNA-1:three_prime_utr;Parent=Msa0396070-mRNA-1
Gene Sequence

>Msa0396070

ATGATAAGCTGTGAAATAAAGAAACAAGTTGTATTGATATACCTATGGTTGTGGTGGAGTACTACTACTAGCATTTGTGTTAAAGCAACGAAAGATAGTTTGAAGCCAGGTGATACATTTAATTCCAATTCCACGCTATTTTCAAAACAAGGCAAGTATGCTCTATTTTTCGATCAAACATTTGAGAGCGAAGATGCTCACTTGGTTATAAGTGTTAATGCAGATTATGGCATTCAGGTGTGGATGTATGATAGAAATCATTCCATTGACTTAAATTCAGCAGTTCTATCACTAGACTACTCTGGTGTGCTCAAAATAGAATCTCAAAATAGTAAACCAAAAATCATTTACTCTTCACCTCAACCCATAAACAACACTTTGGCCACTATATTAGACACAGGAAACTTTGTGCTTCAACAATTTCACCCCAACGGGTCAAAGACTGTGTTGTGGCAGAGTTTTGATTATCCAGCAGATGTTTTGATCCCAACGATGAAGTTAGGCATTAATCGAAAAACAGGACATAATTGGTCAGTGGTGTCATGGTTGACTCCTTCGCGGACAACTTCAGGTGAATTTAGTCTTGAGTGGGAACCAAAACAAGGTGAACTGAACATCAAGAAAAGCGGCAAAGTGTATTGGAAAAGTGGAAAACTTAAAAGCAATGGATTATTCGAGAATATTCCGGCCAATGTACAAAATATGTATCAGTACATTATTGTCTCTAACGAGGATGAAGATTCCTTTACTTTTGAAATTAAAGATCGGAATTATAAGAAGATTTCAGGGTGGACACTAGACTGGGCGGGGATGCTAACGAGTGATGAAGGGACTTATATTGGAAATGCAGACATGTGTTATGGATATAATAGTGATGGAGGGTGCCAAAAATGGGAGGATAAACCAACTTGCAGGGAACCTGGTGAGGTGTTTCAAAAAAAGACTGGAAAACCAAACATAGACAATGCATCAACCATTGAACAGGATGTGACTTATGGTTACAGTGATTGCAAGATGAGATGTTGGAGAAATTGTAATTGCAGTGGATTCCAAGAATTTTATCGTAATGGGACTGGATGTATATTCTATTCATGGAATTCGACACAAGATCTTGATTTGGTGAGTCAGAATAACTTTTACGCCTTGGTAAACTCTACAAAATCAGGACCAAATTCCCATGGTAAAAAACAGTGGATGTGGATATGTTCTGCAATCGCAATTGCTTTACTCATATTATGCCCACTCATTATATGGCTAGCGAAAAAGAAACAAAAATATGCGCTACAAGATAAGAAAGGTAAAAGAAAGGAAGGTAACAACAATGATTTGGCGGAATCCTATGATATCAAAGATCTTGAAGATGACTTCAAGGGACATGATATAAAAGTTTTTAGCTATAAATCAATTTTGGAAGCAACTATGGACTTTTCACCTGAAAACAAGTTAGGACAGGGAGGCTATGGACCTGTTTATAAGGTGACTTTATAG
Protein sequence

>Msa0396070

MISCEIKKQVVLIYLWLWWSTTTSICVKATKDSLKPGDTFNSNSTLFSKQGKYALFFDQTFESEDAHLVISVNADYGIQVWMYDRNHSIDLNSAVLSLDYSGVLKIESQNSKPKIIYSSPQPINNTLATILDTGNFVLQQFHPNGSKTVLWQSFDYPADVLIPTMKLGINRKTGHNWSVVSWLTPSRTTSGEFSLEWEPKQGELNIKKSGKVYWKSGKLKSNGLFENIPANVQNMYQYIIVSNEDEDSFTFEIKDRNYKKISGWTLDWAGMLTSDEGTYIGNADMCYGYNSDGGCQKWEDKPTCREPGEVFQKKTGKPNIDNASTIEQDVTYGYSDCKMRCWRNCNCSGFQEFYRNGTGCIFYSWNSTQDLDLVSQNNFYALVNSTKSGPNSHGKKQWMWICSAIAIALLILCPLIIWLAKKKQKYALQDKKGKRKEGNNNDLAESYDIKDLEDDFKGHDIKVFSYKSILEATMDFSPENKLGQGGYGPVYKVTL*