Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408320 | XP_013459797.1 | 90.244 | 246 | 20 | 1 | 1 | 242 | 2321 | 2566 | 1.40e-142 | 452 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408320 | A0A072UXP5 | 90.244 | 246 | 20 | 1 | 1 | 242 | 2321 | 2566 | 6.69e-143 | 452 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0408320 | Msa1275980 | 0.801028 | 1.092055e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408320 | MtrunA17_Chr3g0098931 | 90.244 | 246 | 20 | 1 | 1 | 242 | 2321 | 2566 | 1.29e-146 | 452 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408320 | AT4G27010.2 | 34.568 | 243 | 149 | 9 | 3 | 240 | 2335 | 2572 | 3.63e-27 | 110 |
| Msa0408320 | AT4G27010.1 | 34.568 | 243 | 149 | 9 | 3 | 240 | 2135 | 2372 | 3.71e-27 | 110 |
| Msa0408320 | AT1G72270.1 | 32.510 | 243 | 145 | 8 | 3 | 237 | 2113 | 2344 | 5.45e-23 | 97.8 |
Find 62 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACAATGACCAACAGATTT+TGG | 0.126968 | 3_2:-47929172 | None:intergenic |
| AATATATATCATTAGATTTC+TGG | 0.139724 | 3_2:-47928132 | None:intergenic |
| GGAAACTAAGTGCTTATTAT+TGG | 0.249032 | 3_2:+47929290 | Msa0408320:exon |
| AGAATCCCTGCATTCTTTAC+TGG | 0.273697 | 3_2:+47928180 | Msa0408320:CDS |
| AATAGGTGAGTGTTATAAAT+AGG | 0.274922 | 3_2:+47929338 | Msa0408320:three_prime_UTR |
| TTAATTGTTAAAACAGAATC+AGG | 0.279817 | 3_2:+47928031 | Msa0408320:CDS |
| GCTCTCTGTCTCCTGACTTT+TGG | 0.285751 | 3_2:+47928334 | Msa0408320:CDS |
| TTTGGTGCCTCTAATTTATC+AGG | 0.288380 | 3_2:+47928352 | Msa0408320:CDS |
| GCATGTTTGTTGGTACATAA+AGG | 0.312815 | 3_2:+47929486 | Msa0408320:three_prime_UTR |
| TTCTATCTCCAACTGCTTCC+TGG | 0.315618 | 3_2:+47928277 | Msa0408320:CDS |
| TCATATCATCAAACTCTTCA+AGG | 0.383155 | 3_2:+47928542 | Msa0408320:CDS |
| TATAAATAGGAAGAGGGAAT+AGG | 0.415858 | 3_2:+47929351 | Msa0408320:three_prime_UTR |
| CAATGGGAAAAGAGTTTACT+AGG | 0.419841 | 3_2:+47929269 | Msa0408320:CDS |
| TCTCCAAGCCGGATTAGCTT+CGG | 0.422223 | 3_2:-47928578 | None:intergenic |
| GCTCACTGGTACACAAGATA+TGG | 0.428024 | 3_2:+47929133 | Msa0408320:CDS |
| ACTGCTTCCTGGTATAAATC+AGG | 0.441984 | 3_2:+47928288 | Msa0408320:CDS |
| TTAACAGCATCAGTAATCAT+TGG | 0.458957 | 3_2:+47928100 | Msa0408320:CDS |
| GATATCTACCTTAATCCAAT+GGG | 0.466148 | 3_2:+47929253 | Msa0408320:CDS |
| ATGCCCTCCCGAAGCTAATC+CGG | 0.470722 | 3_2:+47928570 | Msa0408320:CDS |
| CTCCAAGCCGGATTAGCTTC+GGG | 0.471594 | 3_2:-47928577 | None:intergenic |
| AATTAGAGGCACCAAAAGTC+AGG | 0.475323 | 3_2:-47928345 | None:intergenic |
| CTCCCGAAGCTAATCCGGCT+TGG | 0.480613 | 3_2:+47928575 | Msa0408320:CDS |
| TAGGGTACCTGATAAATTAG+AGG | 0.485580 | 3_2:-47928359 | None:intergenic |
| TCCACTGAATGATCCTTCCT+TGG | 0.486085 | 3_2:-47929110 | None:intergenic |
| CTGAATGATCCTTCCTTGGC+CGG | 0.486487 | 3_2:-47929106 | None:intergenic |
| GATTTATACCAGGAAGCAGT+TGG | 0.488000 | 3_2:-47928285 | None:intergenic |
| TAACAGCATCAGTAATCATT+GGG | 0.491650 | 3_2:+47928101 | Msa0408320:CDS |
| TGAGTGTTATAAATAGGAAG+AGG | 0.496493 | 3_2:+47929344 | Msa0408320:three_prime_UTR |
| TATTGGTGAGTGTTATAAAG+AGG | 0.499441 | 3_2:+47929307 | Msa0408320:three_prime_UTR |
| ATTGTCGCAAATGTGCTTGA+TGG | 0.505381 | 3_2:+47929188 | Msa0408320:CDS |
| ATAGTACCATGCATGTTTGT+TGG | 0.512541 | 3_2:+47929476 | Msa0408320:three_prime_UTR |
| TAGCGTCAAAATTATTGCGC+TGG | 0.512561 | 3_2:+47928077 | Msa0408320:CDS |
| AAGCTAATCCGGCTTGGAGA+TGG | 0.524802 | 3_2:+47928581 | Msa0408320:CDS |
| CATATCATCAAACTCTTCAA+GGG | 0.534859 | 3_2:+47928543 | Msa0408320:CDS |
| GATATTTACCATCTCCAAGC+CGG | 0.537262 | 3_2:-47928589 | None:intergenic |
| TTAATATCATGTCTTTGTCC+CGG | 0.541655 | 3_2:-47928220 | None:intergenic |
| AGATATCTACCTTAATCCAA+TGG | 0.544784 | 3_2:+47929252 | Msa0408320:CDS |
| CATGCACCAGTAAAGAATGC+AGG | 0.546159 | 3_2:-47928186 | None:intergenic |
| GAGTGTTATAAATAGGAAGA+GGG | 0.548588 | 3_2:+47929345 | Msa0408320:three_prime_UTR |
| AAGCACAACATTTGAATACA+AGG | 0.558197 | 3_2:-47929429 | None:intergenic |
| TAATTGTTAAAACAGAATCA+GGG | 0.561610 | 3_2:+47928032 | Msa0408320:CDS |
| GGTGCATGTAGAAAATATGC+CGG | 0.567201 | 3_2:+47928201 | Msa0408320:CDS |
| CAGAGTCTTCACAAAGGCTG+AGG | 0.572218 | 3_2:+47927993 | Msa0408320:CDS |
| TAGATATCTCTACATCTAGA+GGG | 0.573222 | 3_2:-47929238 | None:intergenic |
| GTGCATGTAGAAAATATGCC+GGG | 0.576142 | 3_2:+47928202 | Msa0408320:CDS |
| TCATGCTTGCCAAAATCTGT+TGG | 0.576280 | 3_2:+47929163 | Msa0408320:CDS |
| GATCATTCAGTGGAGCTCAC+TGG | 0.580351 | 3_2:+47929119 | Msa0408320:CDS |
| TGATATTAATATTGATTGTG+AGG | 0.582274 | 3_2:+47928234 | Msa0408320:CDS |
| TAAAGCAGTTGTAATTGCCC+AGG | 0.588502 | 3_2:-47927966 | None:intergenic |
| AGCAGTTCCTGATTTATACC+AGG | 0.594655 | 3_2:-47928295 | None:intergenic |
| GTAGATATCTCTACATCTAG+AGG | 0.599590 | 3_2:-47929239 | None:intergenic |
| CAGAGAGCAGATACAACTGA+TGG | 0.606918 | 3_2:-47928319 | None:intergenic |
| AATTGTTAAAACAGAATCAG+GGG | 0.620302 | 3_2:+47928033 | Msa0408320:CDS |
| ATGCACCAGTAAAGAATGCA+GGG | 0.620774 | 3_2:-47928185 | None:intergenic |
| CACTGGTACACAAGATATGG+AGG | 0.627973 | 3_2:+47929136 | Msa0408320:CDS |
| TATGTACCAACAAACATGCA+TGG | 0.634357 | 3_2:-47929482 | None:intergenic |
| CAAGCCGGATTAGCTTCGGG+AGG | 0.642787 | 3_2:-47928574 | None:intergenic |
| TTGGAGATAGAAAATTGTAG+AGG | 0.646288 | 3_2:-47928266 | None:intergenic |
| GCCAAGGAAGGATCATTCAG+TGG | 0.649921 | 3_2:+47929109 | Msa0408320:CDS |
| AAGCCGGATTAGCTTCGGGA+GGG | 0.658437 | 3_2:-47928573 | None:intergenic |
| AGATATCTCTACATCTAGAG+GGG | 0.680807 | 3_2:-47929237 | None:intergenic |
| TAGCGTCAGAGTCTTCACAA+AGG | 0.742736 | 3_2:+47927987 | Msa0408320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGATATTTTATTAGATTT+TGG | + | chr3_2:47927407-47927426 | Msa0408320:intron | 10.0% |
| !! | GTAAAAAAAACATAAATATA+TGG | - | chr3_2:47928474-47928493 | None:intergenic | 10.0% |
| !! | TTATTTCATAAAAAGTTAAT+TGG | + | chr3_2:47928886-47928905 | Msa0408320:intron | 10.0% |
| !! | TATTTATTATATGTAATGCA+AGG | - | chr3_2:47927570-47927589 | None:intergenic | 15.0% |
| !! | AATATATATCATTAGATTTC+TGG | - | chr3_2:47928135-47928154 | None:intergenic | 15.0% |
| !! | TTATATCTATACATTCAATA+CGG | + | chr3_2:47928384-47928403 | Msa0408320:intron | 15.0% |
| !! | TTCAATCATAATGTTAAATA+AGG | + | chr3_2:47928636-47928655 | Msa0408320:intron | 15.0% |
| !! | TATATAGCTGTAATTTAAAA+TGG | + | chr3_2:47929045-47929064 | Msa0408320:intron | 15.0% |
| !! | ATGTTGTTACAATTATTACA+AGG | - | chr3_2:47927063-47927082 | None:intergenic | 20.0% |
| !!! | TTTTGCTATAGTTTATTCAT+TGG | + | chr3_2:47927451-47927470 | Msa0408320:intron | 20.0% |
| !! | CATTTATTATATTCATCTTC+AGG | - | chr3_2:47927498-47927517 | None:intergenic | 20.0% |
| !! | TTAATTGTTAAAACAGAATC+AGG | + | chr3_2:47928031-47928050 | Msa0408320:CDS | 20.0% |
| !! | TAATTGTTAAAACAGAATCA+GGG | + | chr3_2:47928032-47928051 | Msa0408320:CDS | 20.0% |
| !!! | TGATATTAATATTGATTGTG+AGG | + | chr3_2:47928234-47928253 | Msa0408320:CDS | 20.0% |
| !! | GAATGTATAGATATAAAGTA+GGG | - | chr3_2:47928380-47928399 | None:intergenic | 20.0% |
| !! | TGAATGTATAGATATAAAGT+AGG | - | chr3_2:47928381-47928400 | None:intergenic | 20.0% |
| !!! | CAACTGAATAATTACTTTTT+CGG | - | chr3_2:47928667-47928686 | None:intergenic | 20.0% |
| !!! | AGTTGAGTTTTTATATTTCT+TGG | + | chr3_2:47928682-47928701 | Msa0408320:intron | 20.0% |
| !!! | GTTGAGTTTTTATATTTCTT+GGG | + | chr3_2:47928683-47928702 | Msa0408320:intron | 20.0% |
| !!! | TCTGATTTTTTCTAATACTA+TGG | + | chr3_2:47928711-47928730 | Msa0408320:intron | 20.0% |
| !!! | CTGATTTTTTCTAATACTAT+GGG | + | chr3_2:47928712-47928731 | Msa0408320:intron | 20.0% |
| !!! | TGATTTTTTCTAATACTATG+GGG | + | chr3_2:47928713-47928732 | Msa0408320:intron | 20.0% |
| !! | AGTTTGAAAATTCAAAAAAC+CGG | - | chr3_2:47928769-47928788 | None:intergenic | 20.0% |
| !! | CATAAAAATATACACTTTCT+AGG | - | chr3_2:47928991-47929010 | None:intergenic | 20.0% |
| !!! | CTAATCAGATTTTATTTTTG+TGG | - | chr3_2:47929017-47929036 | None:intergenic | 20.0% |
| !!! | ATAAAATCTGATTAGACTTT+TGG | + | chr3_2:47929022-47929041 | Msa0408320:intron | 20.0% |
| !!! | TTGACATTTATACTTTGTTT+AGG | + | chr3_2:47929075-47929094 | Msa0408320:intron | 20.0% |
| ! | ACAACATTTAGAAAATTCCT+AGG | + | chr3_2:47927076-47927095 | Msa0408320:intron | 25.0% |
| ! | TCTCAACAAGAAAAGAAAAT+AGG | + | chr3_2:47927185-47927204 | Msa0408320:intron | 25.0% |
| ! | TAGCAATTAAACAGATATCT+TGG | - | chr3_2:47927662-47927681 | None:intergenic | 25.0% |
| ! | TGGTAACAAACAAATATGTA+GGG | - | chr3_2:47927867-47927886 | None:intergenic | 25.0% |
| ! | AATTGTTAAAACAGAATCAG+GGG | + | chr3_2:47928033-47928052 | Msa0408320:CDS | 25.0% |
| !!! | AAATTTTAACCTGAGCAATT+TGG | - | chr3_2:47928744-47928763 | None:intergenic | 25.0% |
| ! | AGTAGAAATTCCACATTATA+GGG | - | chr3_2:47928809-47928828 | None:intergenic | 25.0% |
| ! | ATAAAGAGGAGAAAAAGAAT+AGG | + | chr3_2:47929321-47929340 | Msa0408320:three_prime_UTR | 25.0% |
| ! | AATAGGTGAGTGTTATAAAT+AGG | + | chr3_2:47929338-47929357 | Msa0408320:three_prime_UTR | 25.0% |
| ! | CAATTATTACAAGGCATCAA+AGG | - | chr3_2:47927054-47927073 | None:intergenic | 30.0% |
| GAAAATTCCTAGGCATATAT+TGG | + | chr3_2:47927086-47927105 | Msa0408320:intron | 30.0% | |
| ACTTGTGAAAGAATTCTTCT+GGG | - | chr3_2:47927132-47927151 | None:intergenic | 30.0% | |
| ! | GGTATAGAAGCAATCAATTT+TGG | + | chr3_2:47927378-47927397 | Msa0408320:intron | 30.0% |
| CTGAACATGTGTTTATAAGT+GGG | + | chr3_2:47927716-47927735 | Msa0408320:intron | 30.0% | |
| TGAACATGTGTTTATAAGTG+GGG | + | chr3_2:47927717-47927736 | Msa0408320:intron | 30.0% | |
| TTGTGTATTAGAATTGTGGT+TGG | - | chr3_2:47927787-47927806 | None:intergenic | 30.0% | |
| GTTGTTGTGTATTAGAATTG+TGG | - | chr3_2:47927791-47927810 | None:intergenic | 30.0% | |
| TAACAAACAAATATGTAGGG+GGG | - | chr3_2:47927864-47927883 | None:intergenic | 30.0% | |
| GTAACAAACAAATATGTAGG+GGG | - | chr3_2:47927865-47927884 | None:intergenic | 30.0% | |
| GGTAACAAACAAATATGTAG+GGG | - | chr3_2:47927866-47927885 | None:intergenic | 30.0% | |
| CTGGTAACAAACAAATATGT+AGG | - | chr3_2:47927868-47927887 | None:intergenic | 30.0% | |
| ! | ACATATTTGTTTGTTACCAG+TGG | + | chr3_2:47927868-47927887 | Msa0408320:intron | 30.0% |
| TTAACAGCATCAGTAATCAT+TGG | + | chr3_2:47928100-47928119 | Msa0408320:CDS | 30.0% | |
| TAACAGCATCAGTAATCATT+GGG | + | chr3_2:47928101-47928120 | Msa0408320:CDS | 30.0% | |
| TTAATATCATGTCTTTGTCC+CGG | - | chr3_2:47928223-47928242 | None:intergenic | 30.0% | |
| TTGGAGATAGAAAATTGTAG+AGG | - | chr3_2:47928269-47928288 | None:intergenic | 30.0% | |
| !!! | TTTTTTACGTCATTCTGTAG+TGG | + | chr3_2:47928486-47928505 | Msa0408320:intron | 30.0% |
| ! | TTTTTACGTCATTCTGTAGT+GGG | + | chr3_2:47928487-47928506 | Msa0408320:intron | 30.0% |
| TCATATCATCAAACTCTTCA+AGG | + | chr3_2:47928542-47928561 | Msa0408320:CDS | 30.0% | |
| CATATCATCAAACTCTTCAA+GGG | + | chr3_2:47928543-47928562 | Msa0408320:CDS | 30.0% | |
| TTAATAGCATCCCTATAATG+TGG | + | chr3_2:47928796-47928815 | Msa0408320:intron | 30.0% | |
| GAGTAGAAATTCCACATTAT+AGG | - | chr3_2:47928810-47928829 | None:intergenic | 30.0% | |
| TGATCAAAACTAAAATCCGA+TGG | - | chr3_2:47928843-47928862 | None:intergenic | 30.0% | |
| !! | CTTTGTTTAGGTCATTTTAC+CGG | + | chr3_2:47929087-47929106 | Msa0408320:intron | 30.0% |
| TAGATATCTCTACATCTAGA+GGG | - | chr3_2:47929241-47929260 | None:intergenic | 30.0% | |
| AGATATCTACCTTAATCCAA+TGG | + | chr3_2:47929252-47929271 | Msa0408320:CDS | 30.0% | |
| GATATCTACCTTAATCCAAT+GGG | + | chr3_2:47929253-47929272 | Msa0408320:CDS | 30.0% | |
| GGAAACTAAGTGCTTATTAT+TGG | + | chr3_2:47929290-47929309 | Msa0408320:exon | 30.0% | |
| TATTGGTGAGTGTTATAAAG+AGG | + | chr3_2:47929307-47929326 | Msa0408320:three_prime_UTR | 30.0% | |
| TGAGTGTTATAAATAGGAAG+AGG | + | chr3_2:47929344-47929363 | Msa0408320:three_prime_UTR | 30.0% | |
| GAGTGTTATAAATAGGAAGA+GGG | + | chr3_2:47929345-47929364 | Msa0408320:three_prime_UTR | 30.0% | |
| TATAAATAGGAAGAGGGAAT+AGG | + | chr3_2:47929351-47929370 | Msa0408320:three_prime_UTR | 30.0% | |
| !!! | ACTTTTGAGACTAGAAACTT+AGG | + | chr3_2:47929377-47929396 | Msa0408320:three_prime_UTR | 30.0% |
| AAGCACAACATTTGAATACA+AGG | - | chr3_2:47929432-47929451 | None:intergenic | 30.0% | |
| TGGTACTATTGCACAAAAAT+GGG | - | chr3_2:47929465-47929484 | None:intergenic | 30.0% | |
| ATGGTACTATTGCACAAAAA+TGG | - | chr3_2:47929466-47929485 | None:intergenic | 30.0% | |
| ! | TGGTACATAAAGGTTTTTCA+TGG | + | chr3_2:47929496-47929515 | Msa0408320:three_prime_UTR | 30.0% |
| ! | GGTACATAAAGGTTTTTCAT+GGG | + | chr3_2:47929497-47929516 | Msa0408320:three_prime_UTR | 30.0% |
| !!! | TCTGGGAAGAGTTTAGTTTT+TGG | - | chr3_2:47927115-47927134 | None:intergenic | 35.0% |
| CACTTGTGAAAGAATTCTTC+TGG | - | chr3_2:47927133-47927152 | None:intergenic | 35.0% | |
| CCACTTATAAACACATGTTC+AGG | - | chr3_2:47927718-47927737 | None:intergenic | 35.0% | |
| CCTGAACATGTGTTTATAAG+TGG | + | chr3_2:47927715-47927734 | Msa0408320:intron | 35.0% | |
| GAACATGTGTTTATAAGTGG+GGG | + | chr3_2:47927718-47927737 | Msa0408320:intron | 35.0% | |
| ! | AATAACATGCAAAAGTGCAC+AGG | - | chr3_2:47927826-47927845 | None:intergenic | 35.0% |
| AACCACTCTTGTATGTATAC+AGG | + | chr3_2:47927916-47927935 | Msa0408320:intron | 35.0% | |
| ATCCTGTATACATACAAGAG+TGG | - | chr3_2:47927921-47927940 | None:intergenic | 35.0% | |
| TCTTGTATGTATACAGGATG+AGG | + | chr3_2:47927922-47927941 | Msa0408320:intron | 35.0% | |
| ! | AGCTTCAGAATTTTATCACC+TGG | + | chr3_2:47927948-47927967 | Msa0408320:CDS | 35.0% |
| ! | GCTTCAGAATTTTATCACCT+GGG | + | chr3_2:47927949-47927968 | Msa0408320:CDS | 35.0% |
| !! | TTTGGTGCCTCTAATTTATC+AGG | + | chr3_2:47928352-47928371 | Msa0408320:CDS | 35.0% |
| ! | TAGGGTACCTGATAAATTAG+AGG | - | chr3_2:47928362-47928381 | None:intergenic | 35.0% |
| TGCTCAGGTTAAAATTTAGC+CGG | + | chr3_2:47928747-47928766 | Msa0408320:intron | 35.0% | |
| AAGTTCACCAAACACTAAGA+AGG | - | chr3_2:47928928-47928947 | None:intergenic | 35.0% | |
| AGATATCTCTACATCTAGAG+GGG | - | chr3_2:47929240-47929259 | None:intergenic | 35.0% | |
| GTAGATATCTCTACATCTAG+AGG | - | chr3_2:47929242-47929261 | None:intergenic | 35.0% | |
| ! | ACTCTTTTCCCATTGGATTA+AGG | - | chr3_2:47929264-47929283 | None:intergenic | 35.0% |
| ! | CTAGTAAACTCTTTTCCCAT+TGG | - | chr3_2:47929271-47929290 | None:intergenic | 35.0% |
| CAATGGGAAAAGAGTTTACT+AGG | + | chr3_2:47929269-47929288 | Msa0408320:CDS | 35.0% | |
| GTACTATTGCACAAAAATGG+GGG | - | chr3_2:47929463-47929482 | None:intergenic | 35.0% | |
| GGTACTATTGCACAAAAATG+GGG | - | chr3_2:47929464-47929483 | None:intergenic | 35.0% | |
| ATAGTACCATGCATGTTTGT+TGG | + | chr3_2:47929476-47929495 | Msa0408320:three_prime_UTR | 35.0% | |
| TATGTACCAACAAACATGCA+TGG | - | chr3_2:47929485-47929504 | None:intergenic | 35.0% | |
| ! | GCATGTTTGTTGGTACATAA+AGG | + | chr3_2:47929486-47929505 | Msa0408320:three_prime_UTR | 35.0% |
| TTGGAAGCCAATATATGCCT+AGG | - | chr3_2:47927096-47927115 | None:intergenic | 40.0% | |
| TGTGAAGTTGACTGAGTTTG+AGG | - | chr3_2:47927161-47927180 | None:intergenic | 40.0% | |
| CTATCACCACCTCACAAAAA+CGG | - | chr3_2:47927762-47927781 | None:intergenic | 40.0% | |
| TAAAGCAGTTGTAATTGCCC+AGG | - | chr3_2:47927969-47927988 | None:intergenic | 40.0% | |
| TAGCGTCAAAATTATTGCGC+TGG | + | chr3_2:47928077-47928096 | Msa0408320:CDS | 40.0% | |
| AGAATCCCTGCATTCTTTAC+TGG | + | chr3_2:47928180-47928199 | Msa0408320:CDS | 40.0% | |
| ATGCACCAGTAAAGAATGCA+GGG | - | chr3_2:47928188-47928207 | None:intergenic | 40.0% | |
| GGTGCATGTAGAAAATATGC+CGG | + | chr3_2:47928201-47928220 | Msa0408320:CDS | 40.0% | |
| GTGCATGTAGAAAATATGCC+GGG | + | chr3_2:47928202-47928221 | Msa0408320:CDS | 40.0% | |
| GATTTATACCAGGAAGCAGT+TGG | - | chr3_2:47928288-47928307 | None:intergenic | 40.0% | |
| ACTGCTTCCTGGTATAAATC+AGG | + | chr3_2:47928288-47928307 | Msa0408320:CDS | 40.0% | |
| AGCAGTTCCTGATTTATACC+AGG | - | chr3_2:47928298-47928317 | None:intergenic | 40.0% | |
| !! | AATTAGAGGCACCAAAAGTC+AGG | - | chr3_2:47928348-47928367 | None:intergenic | 40.0% |
| GATATTTACCATCTCCAAGC+CGG | - | chr3_2:47928592-47928611 | None:intergenic | 40.0% | |
| CTACTCATAACATCAGCCAT+CGG | + | chr3_2:47928824-47928843 | Msa0408320:intron | 40.0% | |
| AGCAGTACCTTCTTAGTGTT+TGG | + | chr3_2:47928918-47928937 | Msa0408320:intron | 40.0% | |
| TCATGCTTGCCAAAATCTGT+TGG | + | chr3_2:47929163-47929182 | Msa0408320:CDS | 40.0% | |
| ! | CGACAATGACCAACAGATTT+TGG | - | chr3_2:47929175-47929194 | None:intergenic | 40.0% |
| ATTGTCGCAAATGTGCTTGA+TGG | + | chr3_2:47929188-47929207 | Msa0408320:CDS | 40.0% | |
| GAAGTTGACTGAGTTTGAGG+AGG | - | chr3_2:47927158-47927177 | None:intergenic | 45.0% | |
| GCTGAACTGTTCAACTACGT+TGG | + | chr3_2:47927218-47927237 | Msa0408320:intron | 45.0% | |
| AGAGTTAAAGAGTCCCACAC+CGG | + | chr3_2:47927681-47927700 | Msa0408320:intron | 45.0% | |
| TGTTCAGGCCATCTCTTATC+CGG | - | chr3_2:47927703-47927722 | None:intergenic | 45.0% | |
| ! | CGTTTTTGTGAGGTGGTGAT+AGG | + | chr3_2:47927760-47927779 | Msa0408320:intron | 45.0% |
| ! | TGTTTGTTACCAGTGGTCTC+TGG | + | chr3_2:47927875-47927894 | Msa0408320:intron | 45.0% |
| TAGCGTCAGAGTCTTCACAA+AGG | + | chr3_2:47927987-47928006 | Msa0408320:CDS | 45.0% | |
| CATGCACCAGTAAAGAATGC+AGG | - | chr3_2:47928189-47928208 | None:intergenic | 45.0% | |
| TTCTATCTCCAACTGCTTCC+TGG | + | chr3_2:47928277-47928296 | Msa0408320:CDS | 45.0% | |
| CAGAGAGCAGATACAACTGA+TGG | - | chr3_2:47928322-47928341 | None:intergenic | 45.0% | |
| CTATCACCACAACTGCACTT+AGG | - | chr3_2:47928413-47928432 | None:intergenic | 45.0% | |
| CTAAGTGCAGTTGTGGTGAT+AGG | + | chr3_2:47928411-47928430 | Msa0408320:intron | 45.0% | |
| CTCAACCTTTCTTGTCTCTG+TGG | + | chr3_2:47928611-47928630 | Msa0408320:intron | 45.0% | |
| GAAGACCACAGAGACAAGAA+AGG | - | chr3_2:47928619-47928638 | None:intergenic | 45.0% | |
| !! | TTAGGTCATTTTACCGGCCA+AGG | + | chr3_2:47929093-47929112 | Msa0408320:intron | 45.0% |
| TCCACTGAATGATCCTTCCT+TGG | - | chr3_2:47929113-47929132 | None:intergenic | 45.0% | |
| GCTCACTGGTACACAAGATA+TGG | + | chr3_2:47929133-47929152 | Msa0408320:CDS | 45.0% | |
| CACTGGTACACAAGATATGG+AGG | + | chr3_2:47929136-47929155 | Msa0408320:CDS | 45.0% | |
| CAAAAACGGCTTGTGAGGTG+AGG | - | chr3_2:47927748-47927767 | None:intergenic | 50.0% | |
| CCTCACAAAAACGGCTTGTG+AGG | - | chr3_2:47927753-47927772 | None:intergenic | 50.0% | |
| !!! | CCTCACAAGCCGTTTTTGTG+AGG | + | chr3_2:47927750-47927769 | Msa0408320:intron | 50.0% |
| !!! | CACAAGCCGTTTTTGTGAGG+TGG | + | chr3_2:47927753-47927772 | Msa0408320:intron | 50.0% |
| ! | ACATGCAAAAGTGCACAGGC+AGG | - | chr3_2:47927822-47927841 | None:intergenic | 50.0% |
| TTGTTACCAGTGGTCTCTGG+TGG | + | chr3_2:47927878-47927897 | Msa0408320:intron | 50.0% | |
| CAGAGTCTTCACAAAGGCTG+AGG | + | chr3_2:47927993-47928012 | Msa0408320:CDS | 50.0% | |
| ! | GCTCTCTGTCTCCTGACTTT+TGG | + | chr3_2:47928334-47928353 | Msa0408320:CDS | 50.0% |
| CGGTTTCCTAAGTGCAGTTG+TGG | + | chr3_2:47928404-47928423 | Msa0408320:intron | 50.0% | |
| !! | TCTCCAAGCCGGATTAGCTT+CGG | - | chr3_2:47928581-47928600 | None:intergenic | 50.0% |
| !! | AAGCTAATCCGGCTTGGAGA+TGG | + | chr3_2:47928581-47928600 | Msa0408320:CDS | 50.0% |
| !! | GTCATTTTACCGGCCAAGGA+AGG | + | chr3_2:47929097-47929116 | Msa0408320:CDS | 50.0% |
| CTGAATGATCCTTCCTTGGC+CGG | - | chr3_2:47929109-47929128 | None:intergenic | 50.0% | |
| GCCAAGGAAGGATCATTCAG+TGG | + | chr3_2:47929109-47929128 | Msa0408320:CDS | 50.0% | |
| GATCATTCAGTGGAGCTCAC+TGG | + | chr3_2:47929119-47929138 | Msa0408320:CDS | 50.0% | |
| GTCCCACACCGGATAAGAGA+TGG | + | chr3_2:47927692-47927711 | Msa0408320:intron | 55.0% | |
| GGCCATCTCTTATCCGGTGT+GGG | - | chr3_2:47927697-47927716 | None:intergenic | 55.0% | |
| AGGCCATCTCTTATCCGGTG+TGG | - | chr3_2:47927698-47927717 | None:intergenic | 55.0% | |
| CAAGAACCACCAGAGACCAC+TGG | - | chr3_2:47927887-47927906 | None:intergenic | 55.0% | |
| ATGCCCTCCCGAAGCTAATC+CGG | + | chr3_2:47928570-47928589 | Msa0408320:CDS | 55.0% | |
| !! | AAGCCGGATTAGCTTCGGGA+GGG | - | chr3_2:47928576-47928595 | None:intergenic | 55.0% |
| !! | CTCCAAGCCGGATTAGCTTC+GGG | - | chr3_2:47928580-47928599 | None:intergenic | 55.0% |
| !! | CAAGCCGGATTAGCTTCGGG+AGG | - | chr3_2:47928577-47928596 | None:intergenic | 60.0% |
| CTCCCGAAGCTAATCCGGCT+TGG | + | chr3_2:47928575-47928594 | Msa0408320:CDS | 60.0% | |
| GGGGCGACACCAAATTGCTC+AGG | + | chr3_2:47928732-47928751 | Msa0408320:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 47927041 | 47929533 | 47927041 | ID=Msa0408320;Name=Msa0408320 |
| chr3_2 | mRNA | 47927041 | 47929533 | 47927041 | ID=Msa0408320-mRNA-1;Parent=Msa0408320;Name=Msa0408320-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.5|0.4|0.8|0.5|0.4|5|235|242 |
| chr3_2 | exon | 47927041 | 47927046 | 47927041 | ID=Msa0408320-mRNA-1:exon:9262;Parent=Msa0408320-mRNA-1 |
| chr3_2 | exon | 47927938 | 47928156 | 47927938 | ID=Msa0408320-mRNA-1:exon:9263;Parent=Msa0408320-mRNA-1 |
| chr3_2 | exon | 47928169 | 47928373 | 47928169 | ID=Msa0408320-mRNA-1:exon:9264;Parent=Msa0408320-mRNA-1 |
| chr3_2 | exon | 47928506 | 47928602 | 47928506 | ID=Msa0408320-mRNA-1:exon:9265;Parent=Msa0408320-mRNA-1 |
| chr3_2 | exon | 47929097 | 47929533 | 47929097 | ID=Msa0408320-mRNA-1:exon:9266;Parent=Msa0408320-mRNA-1 |
| chr3_2 | CDS | 47927041 | 47927046 | 47927041 | ID=Msa0408320-mRNA-1:cds;Parent=Msa0408320-mRNA-1 |
| chr3_2 | CDS | 47927938 | 47928156 | 47927938 | ID=Msa0408320-mRNA-1:cds;Parent=Msa0408320-mRNA-1 |
| chr3_2 | CDS | 47928169 | 47928373 | 47928169 | ID=Msa0408320-mRNA-1:cds;Parent=Msa0408320-mRNA-1 |
| chr3_2 | CDS | 47928506 | 47928602 | 47928506 | ID=Msa0408320-mRNA-1:cds;Parent=Msa0408320-mRNA-1 |
| chr3_2 | CDS | 47929097 | 47929298 | 47929097 | ID=Msa0408320-mRNA-1:cds;Parent=Msa0408320-mRNA-1 |
| chr3_2 | three_prime_UTR | 47929299 | 47929533 | 47929299 | ID=Msa0408320-mRNA-1:three_prime_utr;Parent=Msa0408320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
