Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408820 | KEH33878.1 | 97.492 | 319 | 7 | 1 | 1 | 318 | 52 | 370 | 0.0 | 655 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408820 | sp|D2WL32|GLGB3_ARATH | 73.841 | 302 | 71 | 3 | 25 | 318 | 64 | 365 | 2.60e-160 | 473 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408820 | A0A396INC7 | 97.492 | 319 | 7 | 1 | 1 | 318 | 52 | 370 | 0.0 | 655 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0408820 | Msa1051200 | 0.800785 | 1.224413e-48 | -8.615850e-47 |
| Msa0408820 | Msa1445660 | 0.800118 | 1.674168e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408820 | MtrunA17_Chr3g0099611 | 97.492 | 319 | 7 | 1 | 1 | 318 | 52 | 370 | 0.0 | 655 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0408820 | AT3G20440.3 | 73.927 | 303 | 71 | 3 | 25 | 319 | 64 | 366 | 2.69e-162 | 476 |
| Msa0408820 | AT3G20440.1 | 73.841 | 302 | 71 | 3 | 25 | 318 | 64 | 365 | 9.16e-162 | 473 |
| Msa0408820 | AT3G20440.2 | 73.841 | 302 | 71 | 3 | 25 | 318 | 64 | 365 | 2.64e-161 | 473 |
Find 89 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAATTCTTTCTTGCCATTC+TGG | 0.127754 | 3_2:+48947326 | None:intergenic |
| GCTTCAAAATTTCATCTTTC+AGG | 0.146136 | 3_2:+48948699 | None:intergenic |
| CTTTCTTCTTCTGCTTCTTT+TGG | 0.175643 | 3_2:+48949760 | None:intergenic |
| AACTTCAAGGAGATGGCTTC+TGG | 0.208081 | 3_2:-48948668 | Msa0408820:CDS |
| TCCGTCCAGGTTTGAGTTAT+TGG | 0.260471 | 3_2:-48948358 | Msa0408820:intron |
| TACTTCGGTCATGATGATTA+TGG | 0.278375 | 3_2:-48947722 | Msa0408820:CDS |
| TTATACCTTGTTTCTGCATC+TGG | 0.283357 | 3_2:+48947434 | None:intergenic |
| ACTTAGCTGGAACTTCAAAA+TGG | 0.308647 | 3_2:+48947516 | None:intergenic |
| TTTCAAGAATACCTACTATA+AGG | 0.314661 | 3_2:+48947128 | None:intergenic |
| AGAACATAGGGTGGATTATA+TGG | 0.321699 | 3_2:-48948319 | Msa0408820:CDS |
| CATTGGAGCGGGTACCTGCT+TGG | 0.322938 | 3_2:-48947175 | Msa0408820:CDS |
| CCGTCCAGGTTTGAGTTATT+GGG | 0.342008 | 3_2:-48948357 | Msa0408820:intron |
| GTCATGATGATTATGGATAC+TGG | 0.348534 | 3_2:-48947715 | Msa0408820:CDS |
| AGATGCAGAAACAAGGTATA+AGG | 0.359576 | 3_2:-48947432 | Msa0408820:CDS |
| TATGTAGATGATTATGATAA+AGG | 0.371366 | 3_2:-48947623 | Msa0408820:CDS |
| CCCAACTCCTCCATGGTTTG+AGG | 0.379991 | 3_2:+48947464 | None:intergenic |
| ACCCGCTCCAATGGCCCATT+TGG | 0.386623 | 3_2:+48947185 | None:intergenic |
| CCATCATCAATCACGGCATA+AGG | 0.387610 | 3_2:+48947383 | None:intergenic |
| ATGTAGATGATTATGATAAA+GGG | 0.389290 | 3_2:-48947622 | Msa0408820:CDS |
| TGAAACCTCCTATAGCATAT+TGG | 0.389407 | 3_2:-48947298 | Msa0408820:CDS |
| GATTATATGGAATGGGCTCC+AGG | 0.406129 | 3_2:-48948306 | Msa0408820:intron |
| ATTGGAGCGGGTACCTGCTT+GGG | 0.414952 | 3_2:-48947174 | Msa0408820:CDS |
| TTCAGGTAACGGTCTTCTCC+TGG | 0.420179 | 3_2:+48947542 | None:intergenic |
| CATCATCAATCACGGCATAA+GGG | 0.421721 | 3_2:+48947384 | None:intergenic |
| AAAAGGGTTATGACCCTGTT+GGG | 0.431132 | 3_2:-48949698 | Msa0408820:CDS |
| GTTTACTTTAACACTCCAAA+TGG | 0.435840 | 3_2:-48947200 | Msa0408820:CDS |
| CGACATATTTAATGTTAAAG+TGG | 0.440019 | 3_2:-48947351 | Msa0408820:CDS |
| TCCATGGTTTGAGGTCCATT+AGG | 0.446477 | 3_2:+48947473 | None:intergenic |
| ACCTCAAACCATGGAGGAGT+TGG | 0.452769 | 3_2:-48947465 | Msa0408820:CDS |
| GAACAGATGTTTGGTCCTAA+TGG | 0.459676 | 3_2:-48947488 | Msa0408820:CDS |
| GCAATTACTGCTGACTTCAA+TGG | 0.462179 | 3_2:-48947779 | Msa0408820:CDS |
| ACTTCAAGGAGATGGCTTCT+GGG | 0.463542 | 3_2:-48948667 | Msa0408820:intron |
| TTGTAGATATAAAGCGTTGA+AGG | 0.464981 | 3_2:-48948723 | Msa0408820:intron |
| GATTATGATAAAGGGGATAG+TGG | 0.469682 | 3_2:-48947614 | Msa0408820:CDS |
| GAAGCGGCACATGAACTTCA+AGG | 0.470857 | 3_2:-48948681 | Msa0408820:CDS |
| ATCTGTTCGTACAACTTAGC+TGG | 0.472764 | 3_2:+48947503 | None:intergenic |
| AAGTTGTACGAACAGATGTT+TGG | 0.477804 | 3_2:-48947497 | Msa0408820:CDS |
| TTGCTCAGTTTCTTCGTGAA+AGG | 0.479152 | 3_2:-48949641 | Msa0408820:intron |
| AAGGAATGGGCAGCAAAGAA+TGG | 0.482395 | 3_2:-48947413 | Msa0408820:CDS |
| CCTTATGCCGTGATTGATGA+TGG | 0.487276 | 3_2:-48947383 | Msa0408820:CDS |
| TTCCTCATCTAAGCAAGTAC+AGG | 0.487448 | 3_2:-48947223 | Msa0408820:CDS |
| CCTCAAACCATGGAGGAGTT+GGG | 0.490940 | 3_2:-48947464 | Msa0408820:CDS |
| TAGGGTGGATTATATGGAAT+GGG | 0.492231 | 3_2:-48948313 | Msa0408820:CDS |
| ATATAATCCACCCTATGTTC+TGG | 0.498449 | 3_2:+48948321 | None:intergenic |
| AGAAAGCAAATGATGAGTAC+TGG | 0.499239 | 3_2:-48947568 | Msa0408820:CDS |
| CAGAAACAAGGTATAAGGAA+TGG | 0.500308 | 3_2:-48947427 | Msa0408820:CDS |
| TTTACTTTAACACTCCAAAT+GGG | 0.506981 | 3_2:-48947199 | Msa0408820:CDS |
| GTTTCAAGCCAATATGCTAT+AGG | 0.508442 | 3_2:+48947290 | None:intergenic |
| ATGTTAAAGTGGATCCAGAA+TGG | 0.520987 | 3_2:-48947340 | Msa0408820:CDS |
| TCCAAATGGGCCATTGGAGC+GGG | 0.521210 | 3_2:-48947186 | Msa0408820:CDS |
| AGAAACAAGGTATAAGGAAT+GGG | 0.521844 | 3_2:-48947426 | Msa0408820:CDS |
| CAAGCAGGTACCCGCTCCAA+TGG | 0.521957 | 3_2:+48947176 | None:intergenic |
| GGCTTGAAACGCGTAAAGGC+AGG | 0.521965 | 3_2:-48947277 | Msa0408820:CDS |
| TTGCTTAGATGAGGAATGCC+GGG | 0.522179 | 3_2:+48947230 | None:intergenic |
| CTTGCTTAGATGAGGAATGC+CGG | 0.527882 | 3_2:+48947229 | None:intergenic |
| CGCGTAAAGGCAGGAAGGCA+TGG | 0.529949 | 3_2:-48947268 | Msa0408820:CDS |
| TAACACTCCAAATGGGCCAT+TGG | 0.530186 | 3_2:-48947192 | Msa0408820:CDS |
| TATGTCTCCCAACTCCTCCA+TGG | 0.536961 | 3_2:+48947457 | None:intergenic |
| TCAAGCCAATATGCTATAGG+AGG | 0.541393 | 3_2:+48947293 | None:intergenic |
| ATAGGGTGGATTATATGGAA+TGG | 0.556359 | 3_2:-48948314 | Msa0408820:CDS |
| GCACATGAACTTCAAGGAGA+TGG | 0.558081 | 3_2:-48948675 | Msa0408820:CDS |
| AATGATGAGTACTGGCAACC+AGG | 0.559068 | 3_2:-48947560 | Msa0408820:CDS |
| TGCATCGCCATCCAGAACAT+AGG | 0.560971 | 3_2:-48948332 | Msa0408820:CDS |
| GCATCGCCATCCAGAACATA+GGG | 0.564818 | 3_2:-48948331 | Msa0408820:CDS |
| TGTAGATGATTATGATAAAG+GGG | 0.566390 | 3_2:-48947621 | Msa0408820:CDS |
| TACCTACTATAAGGTTTACC+TGG | 0.573887 | 3_2:+48947137 | None:intergenic |
| GAAAAGGGTTATGACCCTGT+TGG | 0.577655 | 3_2:-48949699 | Msa0408820:CDS |
| TAAGCTGAGAGAGGGAGAAG+AGG | 0.578125 | 3_2:-48947675 | Msa0408820:CDS |
| CTCCAAATGGGCCATTGGAG+CGG | 0.581597 | 3_2:-48947187 | Msa0408820:CDS |
| TGCACATATGTAGCCCAAGC+AGG | 0.581926 | 3_2:+48947161 | None:intergenic |
| CTTGAAGATAAGCTGAGAGA+GGG | 0.585433 | 3_2:-48947683 | Msa0408820:CDS |
| TTACTGCTGACTTCAATGGC+TGG | 0.586623 | 3_2:-48947775 | Msa0408820:CDS |
| TCCTAATGGACCTCAAACCA+TGG | 0.588542 | 3_2:-48947474 | Msa0408820:CDS |
| TCTTGAAGATAAGCTGAGAG+AGG | 0.594149 | 3_2:-48947684 | Msa0408820:CDS |
| TATTGGCTTGAAACGCGTAA+AGG | 0.599854 | 3_2:-48947281 | Msa0408820:CDS |
| AGCCAGGTAAACCTTATAGT+AGG | 0.609734 | 3_2:-48947139 | Msa0408820:CDS |
| TGGGCTACATATGTGCAGCC+AGG | 0.610798 | 3_2:-48947155 | Msa0408820:CDS |
| AATCCACCCTATGTTCTGGA+TGG | 0.617207 | 3_2:+48948325 | None:intergenic |
| TCAATCACGGCATAAGGGGA+AGG | 0.619030 | 3_2:+48947389 | None:intergenic |
| ACCCTGTACTTGCTTAGATG+AGG | 0.622084 | 3_2:+48947221 | None:intergenic |
| TGTGCAAGAGAGCATTACTT+CGG | 0.622114 | 3_2:-48947737 | Msa0408820:CDS |
| ATTCTTGCCATCATCAATCA+CGG | 0.627061 | 3_2:+48947376 | None:intergenic |
| TCCTCATCTAAGCAAGTACA+GGG | 0.627414 | 3_2:-48947222 | Msa0408820:CDS |
| ATCATCAATCACGGCATAAG+GGG | 0.638925 | 3_2:+48947385 | None:intergenic |
| ACATACCAGATGCAGAAACA+AGG | 0.656585 | 3_2:-48947439 | Msa0408820:CDS |
| TCGCCATCCAGAACATAGGG+TGG | 0.669672 | 3_2:-48948328 | Msa0408820:CDS |
| GTTGGGTTTCTTGTAAAACG+TGG | 0.686113 | 3_2:-48949681 | Msa0408820:CDS |
| TGAAACGCGTAAAGGCAGGA+AGG | 0.691274 | 3_2:-48947273 | Msa0408820:CDS |
| TAATGGACCTCAAACCATGG+AGG | 0.755376 | 3_2:-48947471 | Msa0408820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACGTAAAATGATTTATATT+TGG | - | chr3_2:48947492-48947511 | Msa0408820:CDS | 15.0% |
| !! | GATACATAATTCATATTTAA+AGG | - | chr3_2:48947839-48947858 | Msa0408820:intron | 15.0% |
| !!! | ATAATTTTTGTTTTCCAATT+AGG | + | chr3_2:48948403-48948422 | None:intergenic | 15.0% |
| !! | CGATAATTTCATAAATATAT+AGG | + | chr3_2:48948442-48948461 | None:intergenic | 15.0% |
| !! | AGACTAATAATTCAATATTT+GGG | + | chr3_2:48948676-48948695 | None:intergenic | 15.0% |
| !! | AAGACTAATAATTCAATATT+TGG | + | chr3_2:48948677-48948696 | None:intergenic | 15.0% |
| !! | TGAATTCAAATGGAAAAATT+TGG | - | chr3_2:48947298-48947317 | Msa0408820:CDS | 20.0% |
| !!! | AATTTGTGTTTTGATTTTCT+GGG | - | chr3_2:48947324-48947343 | Msa0408820:CDS | 20.0% |
| !!! | TCATTTTAGAATCATTCTAT+AGG | - | chr3_2:48947596-48947615 | Msa0408820:CDS | 20.0% |
| !! | TCAGTAACTTTCATATAATA+AGG | - | chr3_2:48947964-48947983 | Msa0408820:intron | 20.0% |
| !! | CAGTAACTTTCATATAATAA+GGG | - | chr3_2:48947965-48947984 | Msa0408820:intron | 20.0% |
| !! | AGTAACTTTCATATAATAAG+GGG | - | chr3_2:48947966-48947985 | Msa0408820:intron | 20.0% |
| !! | ATAACTATCACTGAATAAAA+AGG | - | chr3_2:48948023-48948042 | Msa0408820:intron | 20.0% |
| !! | AACAAAAATTGAAAACATAC+AGG | + | chr3_2:48948059-48948078 | None:intergenic | 20.0% |
| !! | TTATCGACATTATGAAATTA+TGG | - | chr3_2:48948456-48948475 | Msa0408820:intron | 20.0% |
| !! | TTTGCCAAAATTTAAAAACA+TGG | + | chr3_2:48948772-48948791 | None:intergenic | 20.0% |
| !!! | AATTTTAGATAAAAGGAGAA+AGG | + | chr3_2:48948987-48949006 | None:intergenic | 20.0% |
| !! | TATGTAGATGATTATGATAA+AGG | - | chr3_2:48949284-48949303 | Msa0408820:intron | 20.0% |
| !! | ATGTAGATGATTATGATAAA+GGG | - | chr3_2:48949285-48949304 | Msa0408820:intron | 20.0% |
| !!! | GAATTTGTGTTTTGATTTTC+TGG | - | chr3_2:48947323-48947342 | Msa0408820:CDS | 25.0% |
| ! | AATGTAAAAATCATGATGAG+AGG | - | chr3_2:48947552-48947571 | Msa0408820:CDS | 25.0% |
| ! | ATTGTGAAACATAAATTCCT+TGG | - | chr3_2:48947759-48947778 | Msa0408820:CDS | 25.0% |
| ! | TTGTGAAACATAAATTCCTT+GGG | - | chr3_2:48947760-48947779 | Msa0408820:CDS | 25.0% |
| !! | CTTGAATATGTGTATGTTTT+AGG | + | chr3_2:48947866-48947885 | None:intergenic | 25.0% |
| ! | CTAAAACATACACATATTCA+AGG | - | chr3_2:48947864-48947883 | Msa0408820:intron | 25.0% |
| ! | AGTGATAGTTATATCAACTT+CGG | + | chr3_2:48948015-48948034 | None:intergenic | 25.0% |
| !!! | ACTTTTTTGTTGTTCTTTCT+TGG | - | chr3_2:48948109-48948128 | Msa0408820:intron | 25.0% |
| !!! | TGAAAGATGAAATTTTGAAG+CGG | - | chr3_2:48948210-48948229 | Msa0408820:intron | 25.0% |
| ! | TTAAAATCTTACGAGAGTTA+AGG | + | chr3_2:48948728-48948747 | None:intergenic | 25.0% |
| !!! | TGCACCATGTTTTTAAATTT+TGG | - | chr3_2:48948765-48948784 | Msa0408820:intron | 25.0% |
| !!! | TTATTCTACTCTTTGAAGTA+TGG | - | chr3_2:48948800-48948819 | Msa0408820:intron | 25.0% |
| ! | TAAACTAATCGCTATTTATC+AGG | + | chr3_2:48948902-48948921 | None:intergenic | 25.0% |
| !! | GGTGTGAAATTTTAGATAAA+AGG | + | chr3_2:48948994-48949013 | None:intergenic | 25.0% |
| ! | TTCAAAAAACAGATTACTCT+GGG | + | chr3_2:48949044-48949063 | None:intergenic | 25.0% |
| ! | ATTCAAAAAACAGATTACTC+TGG | + | chr3_2:48949045-48949064 | None:intergenic | 25.0% |
| ! | TGTAGATGATTATGATAAAG+GGG | - | chr3_2:48949286-48949305 | Msa0408820:intron | 25.0% |
| ! | CGACATATTTAATGTTAAAG+TGG | - | chr3_2:48949556-48949575 | Msa0408820:intron | 25.0% |
| ! | TTTACTTTAACACTCCAAAT+GGG | - | chr3_2:48949708-48949727 | Msa0408820:CDS | 25.0% |
| !! | ACTGATTTTGATGGAGAAAA+GGG | - | chr3_2:48947193-48947212 | Msa0408820:CDS | 30.0% |
| ! | GTTTGTGGATTGAATTCAAA+TGG | - | chr3_2:48947288-48947307 | Msa0408820:CDS | 30.0% |
| AAGTTTGAGTCTTTAGTAGA+AGG | - | chr3_2:48947375-48947394 | Msa0408820:CDS | 30.0% | |
| ATTATGTATCCTCCTATTGA+AGG | + | chr3_2:48947829-48947848 | None:intergenic | 30.0% | |
| ! | ATCACTGAATAAAAAGGTGT+AGG | - | chr3_2:48948029-48948048 | Msa0408820:intron | 30.0% |
| !! | TTGTAGATATAAAGCGTTGA+AGG | - | chr3_2:48948184-48948203 | Msa0408820:intron | 30.0% |
| GCTTCAAAATTTCATCTTTC+AGG | + | chr3_2:48948211-48948230 | None:intergenic | 30.0% | |
| !!! | TTATCCCCAGGATATTTTTT+AGG | - | chr3_2:48948631-48948650 | Msa0408820:intron | 30.0% |
| !!! | TATCCCCAGGATATTTTTTA+GGG | - | chr3_2:48948632-48948651 | Msa0408820:intron | 30.0% |
| GCTTCTTAATACAACAAGAA+AGG | + | chr3_2:48949082-48949101 | None:intergenic | 30.0% | |
| !!! | CAAAATGGTTTTTCAGGTAA+CGG | + | chr3_2:48949379-48949398 | None:intergenic | 30.0% |
| ! | GAACTTCAAAATGGTTTTTC+AGG | + | chr3_2:48949385-48949404 | None:intergenic | 30.0% |
| AGAAACAAGGTATAAGGAAT+GGG | - | chr3_2:48949481-48949500 | Msa0408820:intron | 30.0% | |
| GTTTACTTTAACACTCCAAA+TGG | - | chr3_2:48949707-48949726 | Msa0408820:CDS | 30.0% | |
| ! | CTTTCTTCTTCTGCTTCTTT+TGG | + | chr3_2:48947150-48947169 | None:intergenic | 35.0% |
| !! | GCTAATGAGACTGATTTTGA+TGG | - | chr3_2:48947184-48947203 | Msa0408820:CDS | 35.0% |
| !! | GACTGATTTTGATGGAGAAA+AGG | - | chr3_2:48947192-48947211 | Msa0408820:CDS | 35.0% |
| ! | GTTTTACAAGAAACCCAACA+GGG | + | chr3_2:48947225-48947244 | None:intergenic | 35.0% |
| !!! | CTGGGTTTGTTTTGTTTTTG+TGG | - | chr3_2:48947342-48947361 | Msa0408820:CDS | 35.0% |
| TTATACTCTGAGTGTGTGTT+TGG | - | chr3_2:48947403-48947422 | Msa0408820:CDS | 35.0% | |
| TACTGAAATGTCTGTAACAG+CGG | - | chr3_2:48947623-48947642 | Msa0408820:CDS | 35.0% | |
| GCGGTTATGTACAAATATTC+AGG | - | chr3_2:48947642-48947661 | Msa0408820:CDS | 35.0% | |
| TTTCACTAGGACAACCTAAT+CGG | + | chr3_2:48947670-48947689 | None:intergenic | 35.0% | |
| TGTCCTAGTGAAAACATGTT+AGG | - | chr3_2:48947677-48947696 | Msa0408820:CDS | 35.0% | |
| ! | ATGCCTAACATGTTTTCACT+AGG | + | chr3_2:48947683-48947702 | None:intergenic | 35.0% |
| AAGTCAAGAGAATGTTTACG+AGG | - | chr3_2:48947705-48947724 | Msa0408820:CDS | 35.0% | |
| AACATAAATTCCTTGGGAAG+TGG | - | chr3_2:48947766-48947785 | Msa0408820:CDS | 35.0% | |
| TCCAATATTCAGAGACCAAA+TGG | - | chr3_2:48947902-48947921 | Msa0408820:intron | 35.0% | |
| GATAGTTATATCAACTTCGG+TGG | + | chr3_2:48948012-48948031 | None:intergenic | 35.0% | |
| !! | TCCAATTAGGTTGACTGAAT+GGG | + | chr3_2:48948390-48948409 | None:intergenic | 35.0% |
| !! | TTCCAATTAGGTTGACTGAA+TGG | + | chr3_2:48948391-48948410 | None:intergenic | 35.0% |
| ATATAATCCACCCTATGTTC+TGG | + | chr3_2:48948589-48948608 | None:intergenic | 35.0% | |
| !! | AGAACATAGGGTGGATTATA+TGG | - | chr3_2:48948588-48948607 | Msa0408820:intron | 35.0% |
| !! | ATAGGGTGGATTATATGGAA+TGG | - | chr3_2:48948593-48948612 | Msa0408820:intron | 35.0% |
| !! | TAGGGTGGATTATATGGAAT+GGG | - | chr3_2:48948594-48948613 | Msa0408820:intron | 35.0% |
| AGACCCTAAAAAATATCCTG+GGG | + | chr3_2:48948638-48948657 | None:intergenic | 35.0% | |
| CAGACCCTAAAAAATATCCT+GGG | + | chr3_2:48948639-48948658 | None:intergenic | 35.0% | |
| ACAGACCCTAAAAAATATCC+TGG | + | chr3_2:48948640-48948659 | None:intergenic | 35.0% | |
| !!! | GATATTTTTTAGGGTCTGTC+TGG | - | chr3_2:48948641-48948660 | Msa0408820:intron | 35.0% |
| GAGTTAAGGTATGATTCTTG+CGG | + | chr3_2:48948714-48948733 | None:intergenic | 35.0% | |
| !! | TACTCTTTGAAGTATGGTCT+AGG | - | chr3_2:48948806-48948825 | Msa0408820:intron | 35.0% |
| ! | TTTGAAGTATGGTCTAGGAA+AGG | - | chr3_2:48948811-48948830 | Msa0408820:intron | 35.0% |
| AAAAAACAGATTACTCTGGG+TGG | + | chr3_2:48949041-48949060 | None:intergenic | 35.0% | |
| ! | ATTAAGAAGCATGTAACTGC+AGG | - | chr3_2:48949092-48949111 | Msa0408820:intron | 35.0% |
| ! | TTAAGAAGCATGTAACTGCA+GGG | - | chr3_2:48949093-48949112 | Msa0408820:intron | 35.0% |
| ! | TCTCTTGCACAATTTTCAGT+AGG | + | chr3_2:48949161-48949180 | None:intergenic | 35.0% |
| TACTTCGGTCATGATGATTA+TGG | - | chr3_2:48949185-48949204 | Msa0408820:intron | 35.0% | |
| GTCATGATGATTATGGATAC+TGG | - | chr3_2:48949192-48949211 | Msa0408820:intron | 35.0% | |
| GATTATGATAAAGGGGATAG+TGG | - | chr3_2:48949293-48949312 | Msa0408820:intron | 35.0% | |
| AGAAAGCAAATGATGAGTAC+TGG | - | chr3_2:48949339-48949358 | Msa0408820:intron | 35.0% | |
| ACTTAGCTGGAACTTCAAAA+TGG | + | chr3_2:48949394-48949413 | None:intergenic | 35.0% | |
| AAGTTGTACGAACAGATGTT+TGG | - | chr3_2:48949410-48949429 | Msa0408820:intron | 35.0% | |
| !! | TTATACCTTGTTTCTGCATC+TGG | + | chr3_2:48949476-48949495 | None:intergenic | 35.0% |
| AGATGCAGAAACAAGGTATA+AGG | - | chr3_2:48949475-48949494 | Msa0408820:intron | 35.0% | |
| CAGAAACAAGGTATAAGGAA+TGG | - | chr3_2:48949480-48949499 | Msa0408820:intron | 35.0% | |
| ATTCTTGCCATCATCAATCA+CGG | + | chr3_2:48949534-48949553 | None:intergenic | 35.0% | |
| ATGTTAAAGTGGATCCAGAA+TGG | - | chr3_2:48949567-48949586 | Msa0408820:intron | 35.0% | |
| TGAAACCTCCTATAGCATAT+TGG | - | chr3_2:48949609-48949628 | Msa0408820:intron | 35.0% | |
| GTTTCAAGCCAATATGCTAT+AGG | + | chr3_2:48949620-48949639 | None:intergenic | 35.0% | |
| ! | TGGTTGAAAAAGTATATGCC+CGG | - | chr3_2:48949659-48949678 | Msa0408820:CDS | 35.0% |
| TACCTACTATAAGGTTTACC+TGG | + | chr3_2:48949773-48949792 | None:intergenic | 35.0% | |
| !!! | TGCTTCTTTTGGTGTTGTTG+TGG | + | chr3_2:48947139-48947158 | None:intergenic | 40.0% |
| AAAAGGGTTATGACCCTGTT+GGG | - | chr3_2:48947209-48947228 | Msa0408820:CDS | 40.0% | |
| ! | CGTTTTACAAGAAACCCAAC+AGG | + | chr3_2:48947226-48947245 | None:intergenic | 40.0% |
| GTTGGGTTTCTTGTAAAACG+TGG | - | chr3_2:48947226-48947245 | Msa0408820:CDS | 40.0% | |
| TTGCTCAGTTTCTTCGTGAA+AGG | - | chr3_2:48947266-48947285 | Msa0408820:CDS | 40.0% | |
| GTTTCTTCGTGAAAGGTTTG+TGG | - | chr3_2:48947273-48947292 | Msa0408820:CDS | 40.0% | |
| CAAATATTCAGGACCCGATT+AGG | - | chr3_2:48947653-48947672 | Msa0408820:CDS | 40.0% | |
| TTCACTAGGACAACCTAATC+GGG | + | chr3_2:48947669-48947688 | None:intergenic | 40.0% | |
| TTACGAGGATGCTTCTTAGT+AGG | - | chr3_2:48947720-48947739 | Msa0408820:CDS | 40.0% | |
| !! | ATTGAAGGTGTTCTAAGTCG+AGG | + | chr3_2:48947814-48947833 | None:intergenic | 40.0% |
| CGACTTAGAACACCTTCAAT+AGG | - | chr3_2:48947814-48947833 | Msa0408820:intron | 40.0% | |
| CTTAGAACACCTTCAATAGG+AGG | - | chr3_2:48947817-48947836 | Msa0408820:intron | 40.0% | |
| GCCATTTGGTCTCTGAATAT+TGG | + | chr3_2:48947906-48947925 | None:intergenic | 40.0% | |
| ATGATACGATGTCAGCCATT+TGG | + | chr3_2:48947920-48947939 | None:intergenic | 40.0% | |
| GGCTGACATCGTATCATTTA+AGG | - | chr3_2:48947923-48947942 | Msa0408820:intron | 40.0% | |
| !! | GTGAGTTACATAGCTCTGAT+AGG | - | chr3_2:48948085-48948104 | Msa0408820:intron | 40.0% |
| GTTGTTCTTTCTTGGAGTGT+TGG | - | chr3_2:48948117-48948136 | Msa0408820:intron | 40.0% | |
| CAAGCTGCATTCTTTCTATC+TGG | - | chr3_2:48948341-48948360 | Msa0408820:CDS | 40.0% | |
| ACCCATTCAGTCAACCTAAT+TGG | - | chr3_2:48948386-48948405 | Msa0408820:intron | 40.0% | |
| CGAGTCAAATGCAACTCAAA+AGG | + | chr3_2:48948518-48948537 | None:intergenic | 40.0% | |
| CATACCCAATAACTCAAACC+TGG | + | chr3_2:48948557-48948576 | None:intergenic | 40.0% | |
| TATCTGTCACCTGGTATTCA+GGG | - | chr3_2:48948862-48948881 | Msa0408820:intron | 40.0% | |
| CTTGGGAAAACAACTGTTGA+CGG | + | chr3_2:48949015-48949034 | None:intergenic | 40.0% | |
| ATTACTCTGGGTGGAAACTT+GGG | + | chr3_2:48949032-48949051 | None:intergenic | 40.0% | |
| ! | TAAGAAGCATGTAACTGCAG+GGG | - | chr3_2:48949094-48949113 | Msa0408820:intron | 40.0% |
| !! | GCAATTACTGCTGACTTCAA+TGG | - | chr3_2:48949128-48949147 | Msa0408820:intron | 40.0% |
| !! | TGTGCAAGAGAGCATTACTT+CGG | - | chr3_2:48949170-48949189 | Msa0408820:intron | 40.0% |
| TCTTGAAGATAAGCTGAGAG+AGG | - | chr3_2:48949223-48949242 | Msa0408820:intron | 40.0% | |
| CTTGAAGATAAGCTGAGAGA+GGG | - | chr3_2:48949224-48949243 | Msa0408820:intron | 40.0% | |
| ATCTGTTCGTACAACTTAGC+TGG | + | chr3_2:48949407-48949426 | None:intergenic | 40.0% | |
| GAACAGATGTTTGGTCCTAA+TGG | - | chr3_2:48949419-48949438 | Msa0408820:intron | 40.0% | |
| ACATACCAGATGCAGAAACA+AGG | - | chr3_2:48949468-48949487 | Msa0408820:intron | 40.0% | |
| ATCATCAATCACGGCATAAG+GGG | + | chr3_2:48949525-48949544 | None:intergenic | 40.0% | |
| CATCATCAATCACGGCATAA+GGG | + | chr3_2:48949526-48949545 | None:intergenic | 40.0% | |
| CGAATTCTTTCTTGCCATTC+TGG | + | chr3_2:48949584-48949603 | None:intergenic | 40.0% | |
| TCAAGCCAATATGCTATAGG+AGG | + | chr3_2:48949617-48949636 | None:intergenic | 40.0% | |
| !! | TATTGGCTTGAAACGCGTAA+AGG | - | chr3_2:48949626-48949645 | Msa0408820:intron | 40.0% |
| TTCCTCATCTAAGCAAGTAC+AGG | - | chr3_2:48949684-48949703 | Msa0408820:CDS | 40.0% | |
| TCCTCATCTAAGCAAGTACA+GGG | - | chr3_2:48949685-48949704 | Msa0408820:CDS | 40.0% | |
| AGCCAGGTAAACCTTATAGT+AGG | - | chr3_2:48949768-48949787 | Msa0408820:CDS | 40.0% | |
| GAAAAGGGTTATGACCCTGT+TGG | - | chr3_2:48947208-48947227 | Msa0408820:CDS | 45.0% | |
| GGGGTTCAATGTAATGAGCA+CGG | - | chr3_2:48947985-48948004 | Msa0408820:intron | 45.0% | |
| GCACATGAACTTCAAGGAGA+TGG | - | chr3_2:48948232-48948251 | Msa0408820:intron | 45.0% | |
| AACTTCAAGGAGATGGCTTC+TGG | - | chr3_2:48948239-48948258 | Msa0408820:intron | 45.0% | |
| ACTTCAAGGAGATGGCTTCT+GGG | - | chr3_2:48948240-48948259 | Msa0408820:intron | 45.0% | |
| ! | CAGTGCATTGCTGTGTCTTT+TGG | - | chr3_2:48948308-48948327 | Msa0408820:CDS | 45.0% |
| GCTGTGCTTGTAAAGTTACG+AGG | - | chr3_2:48948490-48948509 | Msa0408820:intron | 45.0% | |
| CGTCTTTATTATGTCCGTCC+AGG | - | chr3_2:48948536-48948555 | Msa0408820:intron | 45.0% | |
| ! | TCCGTCCAGGTTTGAGTTAT+TGG | - | chr3_2:48948549-48948568 | Msa0408820:intron | 45.0% |
| CCCAATAACTCAAACCTGGA+CGG | + | chr3_2:48948553-48948572 | None:intergenic | 45.0% | |
| ! | CCGTCCAGGTTTGAGTTATT+GGG | - | chr3_2:48948550-48948569 | Msa0408820:intron | 45.0% |
| ! | AATCCACCCTATGTTCTGGA+TGG | + | chr3_2:48948585-48948604 | None:intergenic | 45.0% |
| ! | GATTATATGGAATGGGCTCC+AGG | - | chr3_2:48948601-48948620 | Msa0408820:intron | 45.0% |
| AGTATGGTCTAGGAAAGGTC+TGG | - | chr3_2:48948816-48948835 | Msa0408820:intron | 45.0% | |
| ACCTACTTCTATCTGTCACC+TGG | - | chr3_2:48948853-48948872 | Msa0408820:intron | 45.0% | |
| ACCAGGTGACAGATAGAAGT+AGG | + | chr3_2:48948857-48948876 | None:intergenic | 45.0% | |
| CTATCTGTCACCTGGTATTC+AGG | - | chr3_2:48948861-48948880 | Msa0408820:intron | 45.0% | |
| TAGATTCGACCCTGAATACC+AGG | + | chr3_2:48948874-48948893 | None:intergenic | 45.0% | |
| GATTACTCTGGGTGGAAACT+TGG | + | chr3_2:48949033-48949052 | None:intergenic | 45.0% | |
| !! | TTACTGCTGACTTCAATGGC+TGG | - | chr3_2:48949132-48949151 | Msa0408820:intron | 45.0% |
| !! | AATGATGAGTACTGGCAACC+AGG | - | chr3_2:48949347-48949366 | Msa0408820:intron | 45.0% |
| ! | TCCTAATGGACCTCAAACCA+TGG | - | chr3_2:48949433-48949452 | Msa0408820:intron | 45.0% |
| ! | TCCATGGTTTGAGGTCCATT+AGG | + | chr3_2:48949437-48949456 | None:intergenic | 45.0% |
| ! | TAATGGACCTCAAACCATGG+AGG | - | chr3_2:48949436-48949455 | Msa0408820:intron | 45.0% |
| AAGGAATGGGCAGCAAAGAA+TGG | - | chr3_2:48949494-48949513 | Msa0408820:intron | 45.0% | |
| CCATCATCAATCACGGCATA+AGG | + | chr3_2:48949527-48949546 | None:intergenic | 45.0% | |
| CCTTATGCCGTGATTGATGA+TGG | - | chr3_2:48949524-48949543 | Msa0408820:intron | 45.0% | |
| TTGCTTAGATGAGGAATGCC+GGG | + | chr3_2:48949680-48949699 | None:intergenic | 45.0% | |
| CTTGCTTAGATGAGGAATGC+CGG | + | chr3_2:48949681-48949700 | None:intergenic | 45.0% | |
| ACCCTGTACTTGCTTAGATG+AGG | + | chr3_2:48949689-48949708 | None:intergenic | 45.0% | |
| TAACACTCCAAATGGGCCAT+TGG | - | chr3_2:48949715-48949734 | Msa0408820:CDS | 45.0% | |
| CGAGGATGCTTCTTAGTAGG+AGG | - | chr3_2:48947723-48947742 | Msa0408820:CDS | 50.0% | |
| GAAGCGGCACATGAACTTCA+AGG | - | chr3_2:48948226-48948245 | Msa0408820:intron | 50.0% | |
| TGCATCGCCATCCAGAACAT+AGG | - | chr3_2:48948575-48948594 | Msa0408820:intron | 50.0% | |
| GCATCGCCATCCAGAACATA+GGG | - | chr3_2:48948576-48948595 | Msa0408820:intron | 50.0% | |
| CCTGGGGATAATGTCAAACC+TGG | + | chr3_2:48948622-48948641 | None:intergenic | 50.0% | |
| CCAGGTTTGACATTATCCCC+AGG | - | chr3_2:48948619-48948638 | Msa0408820:intron | 50.0% | |
| TAAGCTGAGAGAGGGAGAAG+AGG | - | chr3_2:48949232-48949251 | Msa0408820:intron | 50.0% | |
| ! | TTCAGGTAACGGTCTTCTCC+TGG | + | chr3_2:48949368-48949387 | None:intergenic | 50.0% |
| ACCTCAAACCATGGAGGAGT+TGG | - | chr3_2:48949442-48949461 | Msa0408820:intron | 50.0% | |
| CCTCAAACCATGGAGGAGTT+GGG | - | chr3_2:48949443-48949462 | Msa0408820:intron | 50.0% | |
| TATGTCTCCCAACTCCTCCA+TGG | + | chr3_2:48949453-48949472 | None:intergenic | 50.0% | |
| TCAATCACGGCATAAGGGGA+AGG | + | chr3_2:48949521-48949540 | None:intergenic | 50.0% | |
| TGAAACGCGTAAAGGCAGGA+AGG | - | chr3_2:48949634-48949653 | Msa0408820:intron | 50.0% | |
| TGCACATATGTAGCCCAAGC+AGG | + | chr3_2:48949749-48949768 | None:intergenic | 50.0% | |
| ! | GTTCTAAGTCGAGGCCAGCA+GGG | + | chr3_2:48947805-48947824 | None:intergenic | 55.0% |
| ! | TGTTCTAAGTCGAGGCCAGC+AGG | + | chr3_2:48947806-48947825 | None:intergenic | 55.0% |
| TCGCCATCCAGAACATAGGG+TGG | - | chr3_2:48948579-48948598 | Msa0408820:intron | 55.0% | |
| CCCAACTCCTCCATGGTTTG+AGG | + | chr3_2:48949446-48949465 | None:intergenic | 55.0% | |
| GGCTTGAAACGCGTAAAGGC+AGG | - | chr3_2:48949630-48949649 | Msa0408820:intron | 55.0% | |
| CTCCAAATGGGCCATTGGAG+CGG | - | chr3_2:48949720-48949739 | Msa0408820:CDS | 55.0% | |
| TCCAAATGGGCCATTGGAGC+GGG | - | chr3_2:48949721-48949740 | Msa0408820:CDS | 55.0% | |
| ATTGGAGCGGGTACCTGCTT+GGG | - | chr3_2:48949733-48949752 | Msa0408820:CDS | 55.0% | |
| TGGGCTACATATGTGCAGCC+AGG | - | chr3_2:48949752-48949771 | Msa0408820:CDS | 55.0% | |
| CGAGGTAGGACCACTTCCCA+AGG | + | chr3_2:48947779-48947798 | None:intergenic | 60.0% | |
| CGCGTAAAGGCAGGAAGGCA+TGG | - | chr3_2:48949639-48949658 | Msa0408820:intron | 60.0% | |
| ACCCGCTCCAATGGCCCATT+TGG | + | chr3_2:48949725-48949744 | None:intergenic | 60.0% | |
| CAAGCAGGTACCCGCTCCAA+TGG | + | chr3_2:48949734-48949753 | None:intergenic | 60.0% | |
| CATTGGAGCGGGTACCTGCT+TGG | - | chr3_2:48949732-48949751 | Msa0408820:CDS | 60.0% | |
| GTCCTACCTCGTTGCCCTGC+TGG | - | chr3_2:48947788-48947807 | Msa0408820:CDS | 65.0% | |
| GGCCAGCAGGGCAACGAGGT+AGG | + | chr3_2:48947793-48947812 | None:intergenic | 70.0% | |
| TCGAGGCCAGCAGGGCAACG+AGG | + | chr3_2:48947797-48947816 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 48947130 | 48949799 | 48947130 | ID=Msa0408820;Name=Msa0408820 |
| chr3_2 | mRNA | 48947130 | 48949799 | 48947130 | ID=Msa0408820-mRNA-1;Parent=Msa0408820;Name=Msa0408820-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|1|0.5|1|1|0.75|4|0|326 |
| chr3_2 | exon | 48949642 | 48949799 | 48949642 | ID=Msa0408820-mRNA-1:exon:9572;Parent=Msa0408820-mRNA-1 |
| chr3_2 | exon | 48948668 | 48948739 | 48948668 | ID=Msa0408820-mRNA-1:exon:9571;Parent=Msa0408820-mRNA-1 |
| chr3_2 | exon | 48948307 | 48948371 | 48948307 | ID=Msa0408820-mRNA-1:exon:9570;Parent=Msa0408820-mRNA-1 |
| chr3_2 | exon | 48947130 | 48947815 | 48947130 | ID=Msa0408820-mRNA-1:exon:9569;Parent=Msa0408820-mRNA-1 |
| chr3_2 | CDS | 48949642 | 48949799 | 48949642 | ID=Msa0408820-mRNA-1:cds;Parent=Msa0408820-mRNA-1 |
| chr3_2 | CDS | 48948668 | 48948739 | 48948668 | ID=Msa0408820-mRNA-1:cds;Parent=Msa0408820-mRNA-1 |
| chr3_2 | CDS | 48948307 | 48948371 | 48948307 | ID=Msa0408820-mRNA-1:cds;Parent=Msa0408820-mRNA-1 |
| chr3_2 | CDS | 48947130 | 48947815 | 48947130 | ID=Msa0408820-mRNA-1:cds;Parent=Msa0408820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
