AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0408820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0408820 MtrunA17_Chr3g0099611 97.492 319 7 1 1 318 52 370 0.0 655
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0408820 AT3G20440.3 73.927 303 71 3 25 319 64 366 2.69e-162 476
Msa0408820 AT3G20440.1 73.841 302 71 3 25 318 64 365 9.16e-162 473
Msa0408820 AT3G20440.2 73.841 302 71 3 25 318 64 365 2.64e-161 473

Find 89 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAATTCTTTCTTGCCATTC+TGG 0.127754 3_2:+48947326 None:intergenic
GCTTCAAAATTTCATCTTTC+AGG 0.146136 3_2:+48948699 None:intergenic
CTTTCTTCTTCTGCTTCTTT+TGG 0.175643 3_2:+48949760 None:intergenic
AACTTCAAGGAGATGGCTTC+TGG 0.208081 3_2:-48948668 Msa0408820:CDS
TCCGTCCAGGTTTGAGTTAT+TGG 0.260471 3_2:-48948358 Msa0408820:intron
TACTTCGGTCATGATGATTA+TGG 0.278375 3_2:-48947722 Msa0408820:CDS
TTATACCTTGTTTCTGCATC+TGG 0.283357 3_2:+48947434 None:intergenic
ACTTAGCTGGAACTTCAAAA+TGG 0.308647 3_2:+48947516 None:intergenic
TTTCAAGAATACCTACTATA+AGG 0.314661 3_2:+48947128 None:intergenic
AGAACATAGGGTGGATTATA+TGG 0.321699 3_2:-48948319 Msa0408820:CDS
CATTGGAGCGGGTACCTGCT+TGG 0.322938 3_2:-48947175 Msa0408820:CDS
CCGTCCAGGTTTGAGTTATT+GGG 0.342008 3_2:-48948357 Msa0408820:intron
GTCATGATGATTATGGATAC+TGG 0.348534 3_2:-48947715 Msa0408820:CDS
AGATGCAGAAACAAGGTATA+AGG 0.359576 3_2:-48947432 Msa0408820:CDS
TATGTAGATGATTATGATAA+AGG 0.371366 3_2:-48947623 Msa0408820:CDS
CCCAACTCCTCCATGGTTTG+AGG 0.379991 3_2:+48947464 None:intergenic
ACCCGCTCCAATGGCCCATT+TGG 0.386623 3_2:+48947185 None:intergenic
CCATCATCAATCACGGCATA+AGG 0.387610 3_2:+48947383 None:intergenic
ATGTAGATGATTATGATAAA+GGG 0.389290 3_2:-48947622 Msa0408820:CDS
TGAAACCTCCTATAGCATAT+TGG 0.389407 3_2:-48947298 Msa0408820:CDS
GATTATATGGAATGGGCTCC+AGG 0.406129 3_2:-48948306 Msa0408820:intron
ATTGGAGCGGGTACCTGCTT+GGG 0.414952 3_2:-48947174 Msa0408820:CDS
TTCAGGTAACGGTCTTCTCC+TGG 0.420179 3_2:+48947542 None:intergenic
CATCATCAATCACGGCATAA+GGG 0.421721 3_2:+48947384 None:intergenic
AAAAGGGTTATGACCCTGTT+GGG 0.431132 3_2:-48949698 Msa0408820:CDS
GTTTACTTTAACACTCCAAA+TGG 0.435840 3_2:-48947200 Msa0408820:CDS
CGACATATTTAATGTTAAAG+TGG 0.440019 3_2:-48947351 Msa0408820:CDS
TCCATGGTTTGAGGTCCATT+AGG 0.446477 3_2:+48947473 None:intergenic
ACCTCAAACCATGGAGGAGT+TGG 0.452769 3_2:-48947465 Msa0408820:CDS
GAACAGATGTTTGGTCCTAA+TGG 0.459676 3_2:-48947488 Msa0408820:CDS
GCAATTACTGCTGACTTCAA+TGG 0.462179 3_2:-48947779 Msa0408820:CDS
ACTTCAAGGAGATGGCTTCT+GGG 0.463542 3_2:-48948667 Msa0408820:intron
TTGTAGATATAAAGCGTTGA+AGG 0.464981 3_2:-48948723 Msa0408820:intron
GATTATGATAAAGGGGATAG+TGG 0.469682 3_2:-48947614 Msa0408820:CDS
GAAGCGGCACATGAACTTCA+AGG 0.470857 3_2:-48948681 Msa0408820:CDS
ATCTGTTCGTACAACTTAGC+TGG 0.472764 3_2:+48947503 None:intergenic
AAGTTGTACGAACAGATGTT+TGG 0.477804 3_2:-48947497 Msa0408820:CDS
TTGCTCAGTTTCTTCGTGAA+AGG 0.479152 3_2:-48949641 Msa0408820:intron
AAGGAATGGGCAGCAAAGAA+TGG 0.482395 3_2:-48947413 Msa0408820:CDS
CCTTATGCCGTGATTGATGA+TGG 0.487276 3_2:-48947383 Msa0408820:CDS
TTCCTCATCTAAGCAAGTAC+AGG 0.487448 3_2:-48947223 Msa0408820:CDS
CCTCAAACCATGGAGGAGTT+GGG 0.490940 3_2:-48947464 Msa0408820:CDS
TAGGGTGGATTATATGGAAT+GGG 0.492231 3_2:-48948313 Msa0408820:CDS
ATATAATCCACCCTATGTTC+TGG 0.498449 3_2:+48948321 None:intergenic
AGAAAGCAAATGATGAGTAC+TGG 0.499239 3_2:-48947568 Msa0408820:CDS
CAGAAACAAGGTATAAGGAA+TGG 0.500308 3_2:-48947427 Msa0408820:CDS
TTTACTTTAACACTCCAAAT+GGG 0.506981 3_2:-48947199 Msa0408820:CDS
GTTTCAAGCCAATATGCTAT+AGG 0.508442 3_2:+48947290 None:intergenic
ATGTTAAAGTGGATCCAGAA+TGG 0.520987 3_2:-48947340 Msa0408820:CDS
TCCAAATGGGCCATTGGAGC+GGG 0.521210 3_2:-48947186 Msa0408820:CDS
AGAAACAAGGTATAAGGAAT+GGG 0.521844 3_2:-48947426 Msa0408820:CDS
CAAGCAGGTACCCGCTCCAA+TGG 0.521957 3_2:+48947176 None:intergenic
GGCTTGAAACGCGTAAAGGC+AGG 0.521965 3_2:-48947277 Msa0408820:CDS
TTGCTTAGATGAGGAATGCC+GGG 0.522179 3_2:+48947230 None:intergenic
CTTGCTTAGATGAGGAATGC+CGG 0.527882 3_2:+48947229 None:intergenic
CGCGTAAAGGCAGGAAGGCA+TGG 0.529949 3_2:-48947268 Msa0408820:CDS
TAACACTCCAAATGGGCCAT+TGG 0.530186 3_2:-48947192 Msa0408820:CDS
TATGTCTCCCAACTCCTCCA+TGG 0.536961 3_2:+48947457 None:intergenic
TCAAGCCAATATGCTATAGG+AGG 0.541393 3_2:+48947293 None:intergenic
ATAGGGTGGATTATATGGAA+TGG 0.556359 3_2:-48948314 Msa0408820:CDS
GCACATGAACTTCAAGGAGA+TGG 0.558081 3_2:-48948675 Msa0408820:CDS
AATGATGAGTACTGGCAACC+AGG 0.559068 3_2:-48947560 Msa0408820:CDS
TGCATCGCCATCCAGAACAT+AGG 0.560971 3_2:-48948332 Msa0408820:CDS
GCATCGCCATCCAGAACATA+GGG 0.564818 3_2:-48948331 Msa0408820:CDS
TGTAGATGATTATGATAAAG+GGG 0.566390 3_2:-48947621 Msa0408820:CDS
TACCTACTATAAGGTTTACC+TGG 0.573887 3_2:+48947137 None:intergenic
GAAAAGGGTTATGACCCTGT+TGG 0.577655 3_2:-48949699 Msa0408820:CDS
TAAGCTGAGAGAGGGAGAAG+AGG 0.578125 3_2:-48947675 Msa0408820:CDS
CTCCAAATGGGCCATTGGAG+CGG 0.581597 3_2:-48947187 Msa0408820:CDS
TGCACATATGTAGCCCAAGC+AGG 0.581926 3_2:+48947161 None:intergenic
CTTGAAGATAAGCTGAGAGA+GGG 0.585433 3_2:-48947683 Msa0408820:CDS
TTACTGCTGACTTCAATGGC+TGG 0.586623 3_2:-48947775 Msa0408820:CDS
TCCTAATGGACCTCAAACCA+TGG 0.588542 3_2:-48947474 Msa0408820:CDS
TCTTGAAGATAAGCTGAGAG+AGG 0.594149 3_2:-48947684 Msa0408820:CDS
TATTGGCTTGAAACGCGTAA+AGG 0.599854 3_2:-48947281 Msa0408820:CDS
AGCCAGGTAAACCTTATAGT+AGG 0.609734 3_2:-48947139 Msa0408820:CDS
TGGGCTACATATGTGCAGCC+AGG 0.610798 3_2:-48947155 Msa0408820:CDS
AATCCACCCTATGTTCTGGA+TGG 0.617207 3_2:+48948325 None:intergenic
TCAATCACGGCATAAGGGGA+AGG 0.619030 3_2:+48947389 None:intergenic
ACCCTGTACTTGCTTAGATG+AGG 0.622084 3_2:+48947221 None:intergenic
TGTGCAAGAGAGCATTACTT+CGG 0.622114 3_2:-48947737 Msa0408820:CDS
ATTCTTGCCATCATCAATCA+CGG 0.627061 3_2:+48947376 None:intergenic
TCCTCATCTAAGCAAGTACA+GGG 0.627414 3_2:-48947222 Msa0408820:CDS
ATCATCAATCACGGCATAAG+GGG 0.638925 3_2:+48947385 None:intergenic
ACATACCAGATGCAGAAACA+AGG 0.656585 3_2:-48947439 Msa0408820:CDS
TCGCCATCCAGAACATAGGG+TGG 0.669672 3_2:-48948328 Msa0408820:CDS
GTTGGGTTTCTTGTAAAACG+TGG 0.686113 3_2:-48949681 Msa0408820:CDS
TGAAACGCGTAAAGGCAGGA+AGG 0.691274 3_2:-48947273 Msa0408820:CDS
TAATGGACCTCAAACCATGG+AGG 0.755376 3_2:-48947471 Msa0408820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACGTAAAATGATTTATATT+TGG - chr3_2:48947492-48947511 Msa0408820:CDS 15.0%
!! GATACATAATTCATATTTAA+AGG - chr3_2:48947839-48947858 Msa0408820:intron 15.0%
!!! ATAATTTTTGTTTTCCAATT+AGG + chr3_2:48948403-48948422 None:intergenic 15.0%
!! CGATAATTTCATAAATATAT+AGG + chr3_2:48948442-48948461 None:intergenic 15.0%
!! AGACTAATAATTCAATATTT+GGG + chr3_2:48948676-48948695 None:intergenic 15.0%
!! AAGACTAATAATTCAATATT+TGG + chr3_2:48948677-48948696 None:intergenic 15.0%
!! TGAATTCAAATGGAAAAATT+TGG - chr3_2:48947298-48947317 Msa0408820:CDS 20.0%
!!! AATTTGTGTTTTGATTTTCT+GGG - chr3_2:48947324-48947343 Msa0408820:CDS 20.0%
!!! TCATTTTAGAATCATTCTAT+AGG - chr3_2:48947596-48947615 Msa0408820:CDS 20.0%
!! TCAGTAACTTTCATATAATA+AGG - chr3_2:48947964-48947983 Msa0408820:intron 20.0%
!! CAGTAACTTTCATATAATAA+GGG - chr3_2:48947965-48947984 Msa0408820:intron 20.0%
!! AGTAACTTTCATATAATAAG+GGG - chr3_2:48947966-48947985 Msa0408820:intron 20.0%
!! ATAACTATCACTGAATAAAA+AGG - chr3_2:48948023-48948042 Msa0408820:intron 20.0%
!! AACAAAAATTGAAAACATAC+AGG + chr3_2:48948059-48948078 None:intergenic 20.0%
!! TTATCGACATTATGAAATTA+TGG - chr3_2:48948456-48948475 Msa0408820:intron 20.0%
!! TTTGCCAAAATTTAAAAACA+TGG + chr3_2:48948772-48948791 None:intergenic 20.0%
!!! AATTTTAGATAAAAGGAGAA+AGG + chr3_2:48948987-48949006 None:intergenic 20.0%
!! TATGTAGATGATTATGATAA+AGG - chr3_2:48949284-48949303 Msa0408820:intron 20.0%
!! ATGTAGATGATTATGATAAA+GGG - chr3_2:48949285-48949304 Msa0408820:intron 20.0%
!!! GAATTTGTGTTTTGATTTTC+TGG - chr3_2:48947323-48947342 Msa0408820:CDS 25.0%
! AATGTAAAAATCATGATGAG+AGG - chr3_2:48947552-48947571 Msa0408820:CDS 25.0%
! ATTGTGAAACATAAATTCCT+TGG - chr3_2:48947759-48947778 Msa0408820:CDS 25.0%
! TTGTGAAACATAAATTCCTT+GGG - chr3_2:48947760-48947779 Msa0408820:CDS 25.0%
!! CTTGAATATGTGTATGTTTT+AGG + chr3_2:48947866-48947885 None:intergenic 25.0%
! CTAAAACATACACATATTCA+AGG - chr3_2:48947864-48947883 Msa0408820:intron 25.0%
! AGTGATAGTTATATCAACTT+CGG + chr3_2:48948015-48948034 None:intergenic 25.0%
!!! ACTTTTTTGTTGTTCTTTCT+TGG - chr3_2:48948109-48948128 Msa0408820:intron 25.0%
!!! TGAAAGATGAAATTTTGAAG+CGG - chr3_2:48948210-48948229 Msa0408820:intron 25.0%
! TTAAAATCTTACGAGAGTTA+AGG + chr3_2:48948728-48948747 None:intergenic 25.0%
!!! TGCACCATGTTTTTAAATTT+TGG - chr3_2:48948765-48948784 Msa0408820:intron 25.0%
!!! TTATTCTACTCTTTGAAGTA+TGG - chr3_2:48948800-48948819 Msa0408820:intron 25.0%
! TAAACTAATCGCTATTTATC+AGG + chr3_2:48948902-48948921 None:intergenic 25.0%
!! GGTGTGAAATTTTAGATAAA+AGG + chr3_2:48948994-48949013 None:intergenic 25.0%
! TTCAAAAAACAGATTACTCT+GGG + chr3_2:48949044-48949063 None:intergenic 25.0%
! ATTCAAAAAACAGATTACTC+TGG + chr3_2:48949045-48949064 None:intergenic 25.0%
! TGTAGATGATTATGATAAAG+GGG - chr3_2:48949286-48949305 Msa0408820:intron 25.0%
! CGACATATTTAATGTTAAAG+TGG - chr3_2:48949556-48949575 Msa0408820:intron 25.0%
! TTTACTTTAACACTCCAAAT+GGG - chr3_2:48949708-48949727 Msa0408820:CDS 25.0%
!! ACTGATTTTGATGGAGAAAA+GGG - chr3_2:48947193-48947212 Msa0408820:CDS 30.0%
! GTTTGTGGATTGAATTCAAA+TGG - chr3_2:48947288-48947307 Msa0408820:CDS 30.0%
AAGTTTGAGTCTTTAGTAGA+AGG - chr3_2:48947375-48947394 Msa0408820:CDS 30.0%
ATTATGTATCCTCCTATTGA+AGG + chr3_2:48947829-48947848 None:intergenic 30.0%
! ATCACTGAATAAAAAGGTGT+AGG - chr3_2:48948029-48948048 Msa0408820:intron 30.0%
!! TTGTAGATATAAAGCGTTGA+AGG - chr3_2:48948184-48948203 Msa0408820:intron 30.0%
GCTTCAAAATTTCATCTTTC+AGG + chr3_2:48948211-48948230 None:intergenic 30.0%
!!! TTATCCCCAGGATATTTTTT+AGG - chr3_2:48948631-48948650 Msa0408820:intron 30.0%
!!! TATCCCCAGGATATTTTTTA+GGG - chr3_2:48948632-48948651 Msa0408820:intron 30.0%
GCTTCTTAATACAACAAGAA+AGG + chr3_2:48949082-48949101 None:intergenic 30.0%
!!! CAAAATGGTTTTTCAGGTAA+CGG + chr3_2:48949379-48949398 None:intergenic 30.0%
! GAACTTCAAAATGGTTTTTC+AGG + chr3_2:48949385-48949404 None:intergenic 30.0%
AGAAACAAGGTATAAGGAAT+GGG - chr3_2:48949481-48949500 Msa0408820:intron 30.0%
GTTTACTTTAACACTCCAAA+TGG - chr3_2:48949707-48949726 Msa0408820:CDS 30.0%
! CTTTCTTCTTCTGCTTCTTT+TGG + chr3_2:48947150-48947169 None:intergenic 35.0%
!! GCTAATGAGACTGATTTTGA+TGG - chr3_2:48947184-48947203 Msa0408820:CDS 35.0%
!! GACTGATTTTGATGGAGAAA+AGG - chr3_2:48947192-48947211 Msa0408820:CDS 35.0%
! GTTTTACAAGAAACCCAACA+GGG + chr3_2:48947225-48947244 None:intergenic 35.0%
!!! CTGGGTTTGTTTTGTTTTTG+TGG - chr3_2:48947342-48947361 Msa0408820:CDS 35.0%
TTATACTCTGAGTGTGTGTT+TGG - chr3_2:48947403-48947422 Msa0408820:CDS 35.0%
TACTGAAATGTCTGTAACAG+CGG - chr3_2:48947623-48947642 Msa0408820:CDS 35.0%
GCGGTTATGTACAAATATTC+AGG - chr3_2:48947642-48947661 Msa0408820:CDS 35.0%
TTTCACTAGGACAACCTAAT+CGG + chr3_2:48947670-48947689 None:intergenic 35.0%
TGTCCTAGTGAAAACATGTT+AGG - chr3_2:48947677-48947696 Msa0408820:CDS 35.0%
! ATGCCTAACATGTTTTCACT+AGG + chr3_2:48947683-48947702 None:intergenic 35.0%
AAGTCAAGAGAATGTTTACG+AGG - chr3_2:48947705-48947724 Msa0408820:CDS 35.0%
AACATAAATTCCTTGGGAAG+TGG - chr3_2:48947766-48947785 Msa0408820:CDS 35.0%
TCCAATATTCAGAGACCAAA+TGG - chr3_2:48947902-48947921 Msa0408820:intron 35.0%
GATAGTTATATCAACTTCGG+TGG + chr3_2:48948012-48948031 None:intergenic 35.0%
!! TCCAATTAGGTTGACTGAAT+GGG + chr3_2:48948390-48948409 None:intergenic 35.0%
!! TTCCAATTAGGTTGACTGAA+TGG + chr3_2:48948391-48948410 None:intergenic 35.0%
ATATAATCCACCCTATGTTC+TGG + chr3_2:48948589-48948608 None:intergenic 35.0%
!! AGAACATAGGGTGGATTATA+TGG - chr3_2:48948588-48948607 Msa0408820:intron 35.0%
!! ATAGGGTGGATTATATGGAA+TGG - chr3_2:48948593-48948612 Msa0408820:intron 35.0%
!! TAGGGTGGATTATATGGAAT+GGG - chr3_2:48948594-48948613 Msa0408820:intron 35.0%
AGACCCTAAAAAATATCCTG+GGG + chr3_2:48948638-48948657 None:intergenic 35.0%
CAGACCCTAAAAAATATCCT+GGG + chr3_2:48948639-48948658 None:intergenic 35.0%
ACAGACCCTAAAAAATATCC+TGG + chr3_2:48948640-48948659 None:intergenic 35.0%
!!! GATATTTTTTAGGGTCTGTC+TGG - chr3_2:48948641-48948660 Msa0408820:intron 35.0%
GAGTTAAGGTATGATTCTTG+CGG + chr3_2:48948714-48948733 None:intergenic 35.0%
!! TACTCTTTGAAGTATGGTCT+AGG - chr3_2:48948806-48948825 Msa0408820:intron 35.0%
! TTTGAAGTATGGTCTAGGAA+AGG - chr3_2:48948811-48948830 Msa0408820:intron 35.0%
AAAAAACAGATTACTCTGGG+TGG + chr3_2:48949041-48949060 None:intergenic 35.0%
! ATTAAGAAGCATGTAACTGC+AGG - chr3_2:48949092-48949111 Msa0408820:intron 35.0%
! TTAAGAAGCATGTAACTGCA+GGG - chr3_2:48949093-48949112 Msa0408820:intron 35.0%
! TCTCTTGCACAATTTTCAGT+AGG + chr3_2:48949161-48949180 None:intergenic 35.0%
TACTTCGGTCATGATGATTA+TGG - chr3_2:48949185-48949204 Msa0408820:intron 35.0%
GTCATGATGATTATGGATAC+TGG - chr3_2:48949192-48949211 Msa0408820:intron 35.0%
GATTATGATAAAGGGGATAG+TGG - chr3_2:48949293-48949312 Msa0408820:intron 35.0%
AGAAAGCAAATGATGAGTAC+TGG - chr3_2:48949339-48949358 Msa0408820:intron 35.0%
ACTTAGCTGGAACTTCAAAA+TGG + chr3_2:48949394-48949413 None:intergenic 35.0%
AAGTTGTACGAACAGATGTT+TGG - chr3_2:48949410-48949429 Msa0408820:intron 35.0%
!! TTATACCTTGTTTCTGCATC+TGG + chr3_2:48949476-48949495 None:intergenic 35.0%
AGATGCAGAAACAAGGTATA+AGG - chr3_2:48949475-48949494 Msa0408820:intron 35.0%
CAGAAACAAGGTATAAGGAA+TGG - chr3_2:48949480-48949499 Msa0408820:intron 35.0%
ATTCTTGCCATCATCAATCA+CGG + chr3_2:48949534-48949553 None:intergenic 35.0%
ATGTTAAAGTGGATCCAGAA+TGG - chr3_2:48949567-48949586 Msa0408820:intron 35.0%
TGAAACCTCCTATAGCATAT+TGG - chr3_2:48949609-48949628 Msa0408820:intron 35.0%
GTTTCAAGCCAATATGCTAT+AGG + chr3_2:48949620-48949639 None:intergenic 35.0%
! TGGTTGAAAAAGTATATGCC+CGG - chr3_2:48949659-48949678 Msa0408820:CDS 35.0%
TACCTACTATAAGGTTTACC+TGG + chr3_2:48949773-48949792 None:intergenic 35.0%
!!! TGCTTCTTTTGGTGTTGTTG+TGG + chr3_2:48947139-48947158 None:intergenic 40.0%
AAAAGGGTTATGACCCTGTT+GGG - chr3_2:48947209-48947228 Msa0408820:CDS 40.0%
! CGTTTTACAAGAAACCCAAC+AGG + chr3_2:48947226-48947245 None:intergenic 40.0%
GTTGGGTTTCTTGTAAAACG+TGG - chr3_2:48947226-48947245 Msa0408820:CDS 40.0%
TTGCTCAGTTTCTTCGTGAA+AGG - chr3_2:48947266-48947285 Msa0408820:CDS 40.0%
GTTTCTTCGTGAAAGGTTTG+TGG - chr3_2:48947273-48947292 Msa0408820:CDS 40.0%
CAAATATTCAGGACCCGATT+AGG - chr3_2:48947653-48947672 Msa0408820:CDS 40.0%
TTCACTAGGACAACCTAATC+GGG + chr3_2:48947669-48947688 None:intergenic 40.0%
TTACGAGGATGCTTCTTAGT+AGG - chr3_2:48947720-48947739 Msa0408820:CDS 40.0%
!! ATTGAAGGTGTTCTAAGTCG+AGG + chr3_2:48947814-48947833 None:intergenic 40.0%
CGACTTAGAACACCTTCAAT+AGG - chr3_2:48947814-48947833 Msa0408820:intron 40.0%
CTTAGAACACCTTCAATAGG+AGG - chr3_2:48947817-48947836 Msa0408820:intron 40.0%
GCCATTTGGTCTCTGAATAT+TGG + chr3_2:48947906-48947925 None:intergenic 40.0%
ATGATACGATGTCAGCCATT+TGG + chr3_2:48947920-48947939 None:intergenic 40.0%
GGCTGACATCGTATCATTTA+AGG - chr3_2:48947923-48947942 Msa0408820:intron 40.0%
!! GTGAGTTACATAGCTCTGAT+AGG - chr3_2:48948085-48948104 Msa0408820:intron 40.0%
GTTGTTCTTTCTTGGAGTGT+TGG - chr3_2:48948117-48948136 Msa0408820:intron 40.0%
CAAGCTGCATTCTTTCTATC+TGG - chr3_2:48948341-48948360 Msa0408820:CDS 40.0%
ACCCATTCAGTCAACCTAAT+TGG - chr3_2:48948386-48948405 Msa0408820:intron 40.0%
CGAGTCAAATGCAACTCAAA+AGG + chr3_2:48948518-48948537 None:intergenic 40.0%
CATACCCAATAACTCAAACC+TGG + chr3_2:48948557-48948576 None:intergenic 40.0%
TATCTGTCACCTGGTATTCA+GGG - chr3_2:48948862-48948881 Msa0408820:intron 40.0%
CTTGGGAAAACAACTGTTGA+CGG + chr3_2:48949015-48949034 None:intergenic 40.0%
ATTACTCTGGGTGGAAACTT+GGG + chr3_2:48949032-48949051 None:intergenic 40.0%
! TAAGAAGCATGTAACTGCAG+GGG - chr3_2:48949094-48949113 Msa0408820:intron 40.0%
!! GCAATTACTGCTGACTTCAA+TGG - chr3_2:48949128-48949147 Msa0408820:intron 40.0%
!! TGTGCAAGAGAGCATTACTT+CGG - chr3_2:48949170-48949189 Msa0408820:intron 40.0%
TCTTGAAGATAAGCTGAGAG+AGG - chr3_2:48949223-48949242 Msa0408820:intron 40.0%
CTTGAAGATAAGCTGAGAGA+GGG - chr3_2:48949224-48949243 Msa0408820:intron 40.0%
ATCTGTTCGTACAACTTAGC+TGG + chr3_2:48949407-48949426 None:intergenic 40.0%
GAACAGATGTTTGGTCCTAA+TGG - chr3_2:48949419-48949438 Msa0408820:intron 40.0%
ACATACCAGATGCAGAAACA+AGG - chr3_2:48949468-48949487 Msa0408820:intron 40.0%
ATCATCAATCACGGCATAAG+GGG + chr3_2:48949525-48949544 None:intergenic 40.0%
CATCATCAATCACGGCATAA+GGG + chr3_2:48949526-48949545 None:intergenic 40.0%
CGAATTCTTTCTTGCCATTC+TGG + chr3_2:48949584-48949603 None:intergenic 40.0%
TCAAGCCAATATGCTATAGG+AGG + chr3_2:48949617-48949636 None:intergenic 40.0%
!! TATTGGCTTGAAACGCGTAA+AGG - chr3_2:48949626-48949645 Msa0408820:intron 40.0%
TTCCTCATCTAAGCAAGTAC+AGG - chr3_2:48949684-48949703 Msa0408820:CDS 40.0%
TCCTCATCTAAGCAAGTACA+GGG - chr3_2:48949685-48949704 Msa0408820:CDS 40.0%
AGCCAGGTAAACCTTATAGT+AGG - chr3_2:48949768-48949787 Msa0408820:CDS 40.0%
GAAAAGGGTTATGACCCTGT+TGG - chr3_2:48947208-48947227 Msa0408820:CDS 45.0%
GGGGTTCAATGTAATGAGCA+CGG - chr3_2:48947985-48948004 Msa0408820:intron 45.0%
GCACATGAACTTCAAGGAGA+TGG - chr3_2:48948232-48948251 Msa0408820:intron 45.0%
AACTTCAAGGAGATGGCTTC+TGG - chr3_2:48948239-48948258 Msa0408820:intron 45.0%
ACTTCAAGGAGATGGCTTCT+GGG - chr3_2:48948240-48948259 Msa0408820:intron 45.0%
! CAGTGCATTGCTGTGTCTTT+TGG - chr3_2:48948308-48948327 Msa0408820:CDS 45.0%
GCTGTGCTTGTAAAGTTACG+AGG - chr3_2:48948490-48948509 Msa0408820:intron 45.0%
CGTCTTTATTATGTCCGTCC+AGG - chr3_2:48948536-48948555 Msa0408820:intron 45.0%
! TCCGTCCAGGTTTGAGTTAT+TGG - chr3_2:48948549-48948568 Msa0408820:intron 45.0%
CCCAATAACTCAAACCTGGA+CGG + chr3_2:48948553-48948572 None:intergenic 45.0%
! CCGTCCAGGTTTGAGTTATT+GGG - chr3_2:48948550-48948569 Msa0408820:intron 45.0%
! AATCCACCCTATGTTCTGGA+TGG + chr3_2:48948585-48948604 None:intergenic 45.0%
! GATTATATGGAATGGGCTCC+AGG - chr3_2:48948601-48948620 Msa0408820:intron 45.0%
AGTATGGTCTAGGAAAGGTC+TGG - chr3_2:48948816-48948835 Msa0408820:intron 45.0%
ACCTACTTCTATCTGTCACC+TGG - chr3_2:48948853-48948872 Msa0408820:intron 45.0%
ACCAGGTGACAGATAGAAGT+AGG + chr3_2:48948857-48948876 None:intergenic 45.0%
CTATCTGTCACCTGGTATTC+AGG - chr3_2:48948861-48948880 Msa0408820:intron 45.0%
TAGATTCGACCCTGAATACC+AGG + chr3_2:48948874-48948893 None:intergenic 45.0%
GATTACTCTGGGTGGAAACT+TGG + chr3_2:48949033-48949052 None:intergenic 45.0%
!! TTACTGCTGACTTCAATGGC+TGG - chr3_2:48949132-48949151 Msa0408820:intron 45.0%
!! AATGATGAGTACTGGCAACC+AGG - chr3_2:48949347-48949366 Msa0408820:intron 45.0%
! TCCTAATGGACCTCAAACCA+TGG - chr3_2:48949433-48949452 Msa0408820:intron 45.0%
! TCCATGGTTTGAGGTCCATT+AGG + chr3_2:48949437-48949456 None:intergenic 45.0%
! TAATGGACCTCAAACCATGG+AGG - chr3_2:48949436-48949455 Msa0408820:intron 45.0%
AAGGAATGGGCAGCAAAGAA+TGG - chr3_2:48949494-48949513 Msa0408820:intron 45.0%
CCATCATCAATCACGGCATA+AGG + chr3_2:48949527-48949546 None:intergenic 45.0%
CCTTATGCCGTGATTGATGA+TGG - chr3_2:48949524-48949543 Msa0408820:intron 45.0%
TTGCTTAGATGAGGAATGCC+GGG + chr3_2:48949680-48949699 None:intergenic 45.0%
CTTGCTTAGATGAGGAATGC+CGG + chr3_2:48949681-48949700 None:intergenic 45.0%
ACCCTGTACTTGCTTAGATG+AGG + chr3_2:48949689-48949708 None:intergenic 45.0%
TAACACTCCAAATGGGCCAT+TGG - chr3_2:48949715-48949734 Msa0408820:CDS 45.0%
CGAGGATGCTTCTTAGTAGG+AGG - chr3_2:48947723-48947742 Msa0408820:CDS 50.0%
GAAGCGGCACATGAACTTCA+AGG - chr3_2:48948226-48948245 Msa0408820:intron 50.0%
TGCATCGCCATCCAGAACAT+AGG - chr3_2:48948575-48948594 Msa0408820:intron 50.0%
GCATCGCCATCCAGAACATA+GGG - chr3_2:48948576-48948595 Msa0408820:intron 50.0%
CCTGGGGATAATGTCAAACC+TGG + chr3_2:48948622-48948641 None:intergenic 50.0%
CCAGGTTTGACATTATCCCC+AGG - chr3_2:48948619-48948638 Msa0408820:intron 50.0%
TAAGCTGAGAGAGGGAGAAG+AGG - chr3_2:48949232-48949251 Msa0408820:intron 50.0%
! TTCAGGTAACGGTCTTCTCC+TGG + chr3_2:48949368-48949387 None:intergenic 50.0%
ACCTCAAACCATGGAGGAGT+TGG - chr3_2:48949442-48949461 Msa0408820:intron 50.0%
CCTCAAACCATGGAGGAGTT+GGG - chr3_2:48949443-48949462 Msa0408820:intron 50.0%
TATGTCTCCCAACTCCTCCA+TGG + chr3_2:48949453-48949472 None:intergenic 50.0%
TCAATCACGGCATAAGGGGA+AGG + chr3_2:48949521-48949540 None:intergenic 50.0%
TGAAACGCGTAAAGGCAGGA+AGG - chr3_2:48949634-48949653 Msa0408820:intron 50.0%
TGCACATATGTAGCCCAAGC+AGG + chr3_2:48949749-48949768 None:intergenic 50.0%
! GTTCTAAGTCGAGGCCAGCA+GGG + chr3_2:48947805-48947824 None:intergenic 55.0%
! TGTTCTAAGTCGAGGCCAGC+AGG + chr3_2:48947806-48947825 None:intergenic 55.0%
TCGCCATCCAGAACATAGGG+TGG - chr3_2:48948579-48948598 Msa0408820:intron 55.0%
CCCAACTCCTCCATGGTTTG+AGG + chr3_2:48949446-48949465 None:intergenic 55.0%
GGCTTGAAACGCGTAAAGGC+AGG - chr3_2:48949630-48949649 Msa0408820:intron 55.0%
CTCCAAATGGGCCATTGGAG+CGG - chr3_2:48949720-48949739 Msa0408820:CDS 55.0%
TCCAAATGGGCCATTGGAGC+GGG - chr3_2:48949721-48949740 Msa0408820:CDS 55.0%
ATTGGAGCGGGTACCTGCTT+GGG - chr3_2:48949733-48949752 Msa0408820:CDS 55.0%
TGGGCTACATATGTGCAGCC+AGG - chr3_2:48949752-48949771 Msa0408820:CDS 55.0%
CGAGGTAGGACCACTTCCCA+AGG + chr3_2:48947779-48947798 None:intergenic 60.0%
CGCGTAAAGGCAGGAAGGCA+TGG - chr3_2:48949639-48949658 Msa0408820:intron 60.0%
ACCCGCTCCAATGGCCCATT+TGG + chr3_2:48949725-48949744 None:intergenic 60.0%
CAAGCAGGTACCCGCTCCAA+TGG + chr3_2:48949734-48949753 None:intergenic 60.0%
CATTGGAGCGGGTACCTGCT+TGG - chr3_2:48949732-48949751 Msa0408820:CDS 60.0%
GTCCTACCTCGTTGCCCTGC+TGG - chr3_2:48947788-48947807 Msa0408820:CDS 65.0%
GGCCAGCAGGGCAACGAGGT+AGG + chr3_2:48947793-48947812 None:intergenic 70.0%
TCGAGGCCAGCAGGGCAACG+AGG + chr3_2:48947797-48947816 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 48947130 48949799 48947130 ID=Msa0408820;Name=Msa0408820
chr3_2 mRNA 48947130 48949799 48947130 ID=Msa0408820-mRNA-1;Parent=Msa0408820;Name=Msa0408820-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|1|0.5|1|1|0.75|4|0|326
chr3_2 exon 48949642 48949799 48949642 ID=Msa0408820-mRNA-1:exon:9572;Parent=Msa0408820-mRNA-1
chr3_2 exon 48948668 48948739 48948668 ID=Msa0408820-mRNA-1:exon:9571;Parent=Msa0408820-mRNA-1
chr3_2 exon 48948307 48948371 48948307 ID=Msa0408820-mRNA-1:exon:9570;Parent=Msa0408820-mRNA-1
chr3_2 exon 48947130 48947815 48947130 ID=Msa0408820-mRNA-1:exon:9569;Parent=Msa0408820-mRNA-1
chr3_2 CDS 48949642 48949799 48949642 ID=Msa0408820-mRNA-1:cds;Parent=Msa0408820-mRNA-1
chr3_2 CDS 48948668 48948739 48948668 ID=Msa0408820-mRNA-1:cds;Parent=Msa0408820-mRNA-1
chr3_2 CDS 48948307 48948371 48948307 ID=Msa0408820-mRNA-1:cds;Parent=Msa0408820-mRNA-1
chr3_2 CDS 48947130 48947815 48947130 ID=Msa0408820-mRNA-1:cds;Parent=Msa0408820-mRNA-1
Gene Sequence

>Msa0408820

CAAAATCCACAACAACACCAAAAGAAGCAGAAGAAGAAAGAGTTGAATAACAATGCTAATGAGACTGATTTTGATGGAGAAAAGGGTTATGACCCTGTTGGGTTTCTTGTAAAACGTGGTGTTTCTCATAAACTGTTTGCTCAGTTTCTTCGTGAAAGATATAAAGCGTTGAAGGACCTGAAAGATGAAATTTTGAAGCGGCACATGAACTTCAAGGAGATGGCTTCTGGGTTTGAGTTATTGGGTATGCATCGCCATCCAGAACATAGGGTGGATTATATGGAATGGGCTCCAGGGGCTCGCTATTGTGCAATTACTGCTGACTTCAATGGCTGGTCACCTACTGAAAATTGTGCAAGAGAGCATTACTTCGGTCATGATGATTATGGATACTGGTTTATTGTTCTTGAAGATAAGCTGAGAGAGGGAGAAGAGGCAGATGAACTTTATTTTCAGCAGTATAACTATGTAGATGATTATGATAAAGGGGATAGTGGAGTCACTGTTGAAGAGCTCTTTAAGAAAGCAAATGATGAGTACTGGCAACCAGGAGAAGACCGTTACCTGAAAAACCATTTTGAAGTTCCAGCTAAGTTGTACGAACAGATGTTTGGTCCTAATGGACCTCAAACCATGGAGGAGTTGGGAGACATACCAGATGCAGAAACAAGGTATAAGGAATGGGCAGCAAAGAATGGACCTTCCCCTTATGCCGTGATTGATGATGGCAAGAATTACGACATATTTAATGTTAAAGTGGATCCAGAATGGCAAGAAAGAATTCGTGCGTTGAAACCTCCTATAGCATATTGGCTTGAAACGCGTAAAGGCAGGAAGGCATGGTTGAAAAAGTATATGCCCGGCATTCCTCATCTAAGCAAGTACAGGGTTTACTTTAACACTCCAAATGGGCCATTGGAGCGGGTACCTGCTTGGGCTACATATGTGCAGCCAGGTAAACCTTATAGTAGGTATTCTTGA

Protein sequence

>Msa0408820

QNPQQHQKKQKKKELNNNANETDFDGEKGYDPVGFLVKRGVSHKLFAQFLRERYKALKDLKDEILKRHMNFKEMASGFELLGMHRHPEHRVDYMEWAPGARYCAITADFNGWSPTENCAREHYFGHDDYGYWFIVLEDKLREGEEADELYFQQYNYVDDYDKGDSGVTVEELFKKANDEYWQPGEDRYLKNHFEVPAKLYEQMFGPNGPQTMEELGDIPDAETRYKEWAAKNGPSPYAVIDDGKNYDIFNVKVDPEWQERIRALKPPIAYWLETRKGRKAWLKKYMPGIPHLSKYRVYFNTPNGPLERVPAWATYVQPGKPYSRYS*