Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0408820 | KEH33878.1 | 97.492 | 319 | 7 | 1 | 1 | 318 | 52 | 370 | 0.0 | 655 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0408820 | sp|D2WL32|GLGB3_ARATH | 73.841 | 302 | 71 | 3 | 25 | 318 | 64 | 365 | 2.60e-160 | 473 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0408820 | A0A396INC7 | 97.492 | 319 | 7 | 1 | 1 | 318 | 52 | 370 | 0.0 | 655 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0408820 | Msa1051200 | 0.800785 | 1.224413e-48 | -8.615850e-47 |
Msa0408820 | Msa1445660 | 0.800118 | 1.674168e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0408820 | MtrunA17_Chr3g0099611 | 97.492 | 319 | 7 | 1 | 1 | 318 | 52 | 370 | 0.0 | 655 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0408820 | AT3G20440.3 | 73.927 | 303 | 71 | 3 | 25 | 319 | 64 | 366 | 2.69e-162 | 476 |
Msa0408820 | AT3G20440.1 | 73.841 | 302 | 71 | 3 | 25 | 318 | 64 | 365 | 9.16e-162 | 473 |
Msa0408820 | AT3G20440.2 | 73.841 | 302 | 71 | 3 | 25 | 318 | 64 | 365 | 2.64e-161 | 473 |
Find 89 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGAATTCTTTCTTGCCATTC+TGG | 0.127754 | 3_2:+48947326 | None:intergenic |
GCTTCAAAATTTCATCTTTC+AGG | 0.146136 | 3_2:+48948699 | None:intergenic |
CTTTCTTCTTCTGCTTCTTT+TGG | 0.175643 | 3_2:+48949760 | None:intergenic |
AACTTCAAGGAGATGGCTTC+TGG | 0.208081 | 3_2:-48948668 | Msa0408820:CDS |
TCCGTCCAGGTTTGAGTTAT+TGG | 0.260471 | 3_2:-48948358 | Msa0408820:intron |
TACTTCGGTCATGATGATTA+TGG | 0.278375 | 3_2:-48947722 | Msa0408820:CDS |
TTATACCTTGTTTCTGCATC+TGG | 0.283357 | 3_2:+48947434 | None:intergenic |
ACTTAGCTGGAACTTCAAAA+TGG | 0.308647 | 3_2:+48947516 | None:intergenic |
TTTCAAGAATACCTACTATA+AGG | 0.314661 | 3_2:+48947128 | None:intergenic |
AGAACATAGGGTGGATTATA+TGG | 0.321699 | 3_2:-48948319 | Msa0408820:CDS |
CATTGGAGCGGGTACCTGCT+TGG | 0.322938 | 3_2:-48947175 | Msa0408820:CDS |
CCGTCCAGGTTTGAGTTATT+GGG | 0.342008 | 3_2:-48948357 | Msa0408820:intron |
GTCATGATGATTATGGATAC+TGG | 0.348534 | 3_2:-48947715 | Msa0408820:CDS |
AGATGCAGAAACAAGGTATA+AGG | 0.359576 | 3_2:-48947432 | Msa0408820:CDS |
TATGTAGATGATTATGATAA+AGG | 0.371366 | 3_2:-48947623 | Msa0408820:CDS |
CCCAACTCCTCCATGGTTTG+AGG | 0.379991 | 3_2:+48947464 | None:intergenic |
ACCCGCTCCAATGGCCCATT+TGG | 0.386623 | 3_2:+48947185 | None:intergenic |
CCATCATCAATCACGGCATA+AGG | 0.387610 | 3_2:+48947383 | None:intergenic |
ATGTAGATGATTATGATAAA+GGG | 0.389290 | 3_2:-48947622 | Msa0408820:CDS |
TGAAACCTCCTATAGCATAT+TGG | 0.389407 | 3_2:-48947298 | Msa0408820:CDS |
GATTATATGGAATGGGCTCC+AGG | 0.406129 | 3_2:-48948306 | Msa0408820:intron |
ATTGGAGCGGGTACCTGCTT+GGG | 0.414952 | 3_2:-48947174 | Msa0408820:CDS |
TTCAGGTAACGGTCTTCTCC+TGG | 0.420179 | 3_2:+48947542 | None:intergenic |
CATCATCAATCACGGCATAA+GGG | 0.421721 | 3_2:+48947384 | None:intergenic |
AAAAGGGTTATGACCCTGTT+GGG | 0.431132 | 3_2:-48949698 | Msa0408820:CDS |
GTTTACTTTAACACTCCAAA+TGG | 0.435840 | 3_2:-48947200 | Msa0408820:CDS |
CGACATATTTAATGTTAAAG+TGG | 0.440019 | 3_2:-48947351 | Msa0408820:CDS |
TCCATGGTTTGAGGTCCATT+AGG | 0.446477 | 3_2:+48947473 | None:intergenic |
ACCTCAAACCATGGAGGAGT+TGG | 0.452769 | 3_2:-48947465 | Msa0408820:CDS |
GAACAGATGTTTGGTCCTAA+TGG | 0.459676 | 3_2:-48947488 | Msa0408820:CDS |
GCAATTACTGCTGACTTCAA+TGG | 0.462179 | 3_2:-48947779 | Msa0408820:CDS |
ACTTCAAGGAGATGGCTTCT+GGG | 0.463542 | 3_2:-48948667 | Msa0408820:intron |
TTGTAGATATAAAGCGTTGA+AGG | 0.464981 | 3_2:-48948723 | Msa0408820:intron |
GATTATGATAAAGGGGATAG+TGG | 0.469682 | 3_2:-48947614 | Msa0408820:CDS |
GAAGCGGCACATGAACTTCA+AGG | 0.470857 | 3_2:-48948681 | Msa0408820:CDS |
ATCTGTTCGTACAACTTAGC+TGG | 0.472764 | 3_2:+48947503 | None:intergenic |
AAGTTGTACGAACAGATGTT+TGG | 0.477804 | 3_2:-48947497 | Msa0408820:CDS |
TTGCTCAGTTTCTTCGTGAA+AGG | 0.479152 | 3_2:-48949641 | Msa0408820:intron |
AAGGAATGGGCAGCAAAGAA+TGG | 0.482395 | 3_2:-48947413 | Msa0408820:CDS |
CCTTATGCCGTGATTGATGA+TGG | 0.487276 | 3_2:-48947383 | Msa0408820:CDS |
TTCCTCATCTAAGCAAGTAC+AGG | 0.487448 | 3_2:-48947223 | Msa0408820:CDS |
CCTCAAACCATGGAGGAGTT+GGG | 0.490940 | 3_2:-48947464 | Msa0408820:CDS |
TAGGGTGGATTATATGGAAT+GGG | 0.492231 | 3_2:-48948313 | Msa0408820:CDS |
ATATAATCCACCCTATGTTC+TGG | 0.498449 | 3_2:+48948321 | None:intergenic |
AGAAAGCAAATGATGAGTAC+TGG | 0.499239 | 3_2:-48947568 | Msa0408820:CDS |
CAGAAACAAGGTATAAGGAA+TGG | 0.500308 | 3_2:-48947427 | Msa0408820:CDS |
TTTACTTTAACACTCCAAAT+GGG | 0.506981 | 3_2:-48947199 | Msa0408820:CDS |
GTTTCAAGCCAATATGCTAT+AGG | 0.508442 | 3_2:+48947290 | None:intergenic |
ATGTTAAAGTGGATCCAGAA+TGG | 0.520987 | 3_2:-48947340 | Msa0408820:CDS |
TCCAAATGGGCCATTGGAGC+GGG | 0.521210 | 3_2:-48947186 | Msa0408820:CDS |
AGAAACAAGGTATAAGGAAT+GGG | 0.521844 | 3_2:-48947426 | Msa0408820:CDS |
CAAGCAGGTACCCGCTCCAA+TGG | 0.521957 | 3_2:+48947176 | None:intergenic |
GGCTTGAAACGCGTAAAGGC+AGG | 0.521965 | 3_2:-48947277 | Msa0408820:CDS |
TTGCTTAGATGAGGAATGCC+GGG | 0.522179 | 3_2:+48947230 | None:intergenic |
CTTGCTTAGATGAGGAATGC+CGG | 0.527882 | 3_2:+48947229 | None:intergenic |
CGCGTAAAGGCAGGAAGGCA+TGG | 0.529949 | 3_2:-48947268 | Msa0408820:CDS |
TAACACTCCAAATGGGCCAT+TGG | 0.530186 | 3_2:-48947192 | Msa0408820:CDS |
TATGTCTCCCAACTCCTCCA+TGG | 0.536961 | 3_2:+48947457 | None:intergenic |
TCAAGCCAATATGCTATAGG+AGG | 0.541393 | 3_2:+48947293 | None:intergenic |
ATAGGGTGGATTATATGGAA+TGG | 0.556359 | 3_2:-48948314 | Msa0408820:CDS |
GCACATGAACTTCAAGGAGA+TGG | 0.558081 | 3_2:-48948675 | Msa0408820:CDS |
AATGATGAGTACTGGCAACC+AGG | 0.559068 | 3_2:-48947560 | Msa0408820:CDS |
TGCATCGCCATCCAGAACAT+AGG | 0.560971 | 3_2:-48948332 | Msa0408820:CDS |
GCATCGCCATCCAGAACATA+GGG | 0.564818 | 3_2:-48948331 | Msa0408820:CDS |
TGTAGATGATTATGATAAAG+GGG | 0.566390 | 3_2:-48947621 | Msa0408820:CDS |
TACCTACTATAAGGTTTACC+TGG | 0.573887 | 3_2:+48947137 | None:intergenic |
GAAAAGGGTTATGACCCTGT+TGG | 0.577655 | 3_2:-48949699 | Msa0408820:CDS |
TAAGCTGAGAGAGGGAGAAG+AGG | 0.578125 | 3_2:-48947675 | Msa0408820:CDS |
CTCCAAATGGGCCATTGGAG+CGG | 0.581597 | 3_2:-48947187 | Msa0408820:CDS |
TGCACATATGTAGCCCAAGC+AGG | 0.581926 | 3_2:+48947161 | None:intergenic |
CTTGAAGATAAGCTGAGAGA+GGG | 0.585433 | 3_2:-48947683 | Msa0408820:CDS |
TTACTGCTGACTTCAATGGC+TGG | 0.586623 | 3_2:-48947775 | Msa0408820:CDS |
TCCTAATGGACCTCAAACCA+TGG | 0.588542 | 3_2:-48947474 | Msa0408820:CDS |
TCTTGAAGATAAGCTGAGAG+AGG | 0.594149 | 3_2:-48947684 | Msa0408820:CDS |
TATTGGCTTGAAACGCGTAA+AGG | 0.599854 | 3_2:-48947281 | Msa0408820:CDS |
AGCCAGGTAAACCTTATAGT+AGG | 0.609734 | 3_2:-48947139 | Msa0408820:CDS |
TGGGCTACATATGTGCAGCC+AGG | 0.610798 | 3_2:-48947155 | Msa0408820:CDS |
AATCCACCCTATGTTCTGGA+TGG | 0.617207 | 3_2:+48948325 | None:intergenic |
TCAATCACGGCATAAGGGGA+AGG | 0.619030 | 3_2:+48947389 | None:intergenic |
ACCCTGTACTTGCTTAGATG+AGG | 0.622084 | 3_2:+48947221 | None:intergenic |
TGTGCAAGAGAGCATTACTT+CGG | 0.622114 | 3_2:-48947737 | Msa0408820:CDS |
ATTCTTGCCATCATCAATCA+CGG | 0.627061 | 3_2:+48947376 | None:intergenic |
TCCTCATCTAAGCAAGTACA+GGG | 0.627414 | 3_2:-48947222 | Msa0408820:CDS |
ATCATCAATCACGGCATAAG+GGG | 0.638925 | 3_2:+48947385 | None:intergenic |
ACATACCAGATGCAGAAACA+AGG | 0.656585 | 3_2:-48947439 | Msa0408820:CDS |
TCGCCATCCAGAACATAGGG+TGG | 0.669672 | 3_2:-48948328 | Msa0408820:CDS |
GTTGGGTTTCTTGTAAAACG+TGG | 0.686113 | 3_2:-48949681 | Msa0408820:CDS |
TGAAACGCGTAAAGGCAGGA+AGG | 0.691274 | 3_2:-48947273 | Msa0408820:CDS |
TAATGGACCTCAAACCATGG+AGG | 0.755376 | 3_2:-48947471 | Msa0408820:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AACGTAAAATGATTTATATT+TGG | - | chr3_2:48947492-48947511 | Msa0408820:CDS | 15.0% |
!! | GATACATAATTCATATTTAA+AGG | - | chr3_2:48947839-48947858 | Msa0408820:intron | 15.0% |
!!! | ATAATTTTTGTTTTCCAATT+AGG | + | chr3_2:48948403-48948422 | None:intergenic | 15.0% |
!! | CGATAATTTCATAAATATAT+AGG | + | chr3_2:48948442-48948461 | None:intergenic | 15.0% |
!! | AGACTAATAATTCAATATTT+GGG | + | chr3_2:48948676-48948695 | None:intergenic | 15.0% |
!! | AAGACTAATAATTCAATATT+TGG | + | chr3_2:48948677-48948696 | None:intergenic | 15.0% |
!! | TGAATTCAAATGGAAAAATT+TGG | - | chr3_2:48947298-48947317 | Msa0408820:CDS | 20.0% |
!!! | AATTTGTGTTTTGATTTTCT+GGG | - | chr3_2:48947324-48947343 | Msa0408820:CDS | 20.0% |
!!! | TCATTTTAGAATCATTCTAT+AGG | - | chr3_2:48947596-48947615 | Msa0408820:CDS | 20.0% |
!! | TCAGTAACTTTCATATAATA+AGG | - | chr3_2:48947964-48947983 | Msa0408820:intron | 20.0% |
!! | CAGTAACTTTCATATAATAA+GGG | - | chr3_2:48947965-48947984 | Msa0408820:intron | 20.0% |
!! | AGTAACTTTCATATAATAAG+GGG | - | chr3_2:48947966-48947985 | Msa0408820:intron | 20.0% |
!! | ATAACTATCACTGAATAAAA+AGG | - | chr3_2:48948023-48948042 | Msa0408820:intron | 20.0% |
!! | AACAAAAATTGAAAACATAC+AGG | + | chr3_2:48948059-48948078 | None:intergenic | 20.0% |
!! | TTATCGACATTATGAAATTA+TGG | - | chr3_2:48948456-48948475 | Msa0408820:intron | 20.0% |
!! | TTTGCCAAAATTTAAAAACA+TGG | + | chr3_2:48948772-48948791 | None:intergenic | 20.0% |
!!! | AATTTTAGATAAAAGGAGAA+AGG | + | chr3_2:48948987-48949006 | None:intergenic | 20.0% |
!! | TATGTAGATGATTATGATAA+AGG | - | chr3_2:48949284-48949303 | Msa0408820:intron | 20.0% |
!! | ATGTAGATGATTATGATAAA+GGG | - | chr3_2:48949285-48949304 | Msa0408820:intron | 20.0% |
!!! | GAATTTGTGTTTTGATTTTC+TGG | - | chr3_2:48947323-48947342 | Msa0408820:CDS | 25.0% |
! | AATGTAAAAATCATGATGAG+AGG | - | chr3_2:48947552-48947571 | Msa0408820:CDS | 25.0% |
! | ATTGTGAAACATAAATTCCT+TGG | - | chr3_2:48947759-48947778 | Msa0408820:CDS | 25.0% |
! | TTGTGAAACATAAATTCCTT+GGG | - | chr3_2:48947760-48947779 | Msa0408820:CDS | 25.0% |
!! | CTTGAATATGTGTATGTTTT+AGG | + | chr3_2:48947866-48947885 | None:intergenic | 25.0% |
! | CTAAAACATACACATATTCA+AGG | - | chr3_2:48947864-48947883 | Msa0408820:intron | 25.0% |
! | AGTGATAGTTATATCAACTT+CGG | + | chr3_2:48948015-48948034 | None:intergenic | 25.0% |
!!! | ACTTTTTTGTTGTTCTTTCT+TGG | - | chr3_2:48948109-48948128 | Msa0408820:intron | 25.0% |
!!! | TGAAAGATGAAATTTTGAAG+CGG | - | chr3_2:48948210-48948229 | Msa0408820:intron | 25.0% |
! | TTAAAATCTTACGAGAGTTA+AGG | + | chr3_2:48948728-48948747 | None:intergenic | 25.0% |
!!! | TGCACCATGTTTTTAAATTT+TGG | - | chr3_2:48948765-48948784 | Msa0408820:intron | 25.0% |
!!! | TTATTCTACTCTTTGAAGTA+TGG | - | chr3_2:48948800-48948819 | Msa0408820:intron | 25.0% |
! | TAAACTAATCGCTATTTATC+AGG | + | chr3_2:48948902-48948921 | None:intergenic | 25.0% |
!! | GGTGTGAAATTTTAGATAAA+AGG | + | chr3_2:48948994-48949013 | None:intergenic | 25.0% |
! | TTCAAAAAACAGATTACTCT+GGG | + | chr3_2:48949044-48949063 | None:intergenic | 25.0% |
! | ATTCAAAAAACAGATTACTC+TGG | + | chr3_2:48949045-48949064 | None:intergenic | 25.0% |
! | TGTAGATGATTATGATAAAG+GGG | - | chr3_2:48949286-48949305 | Msa0408820:intron | 25.0% |
! | CGACATATTTAATGTTAAAG+TGG | - | chr3_2:48949556-48949575 | Msa0408820:intron | 25.0% |
! | TTTACTTTAACACTCCAAAT+GGG | - | chr3_2:48949708-48949727 | Msa0408820:CDS | 25.0% |
!! | ACTGATTTTGATGGAGAAAA+GGG | - | chr3_2:48947193-48947212 | Msa0408820:CDS | 30.0% |
! | GTTTGTGGATTGAATTCAAA+TGG | - | chr3_2:48947288-48947307 | Msa0408820:CDS | 30.0% |
AAGTTTGAGTCTTTAGTAGA+AGG | - | chr3_2:48947375-48947394 | Msa0408820:CDS | 30.0% | |
ATTATGTATCCTCCTATTGA+AGG | + | chr3_2:48947829-48947848 | None:intergenic | 30.0% | |
! | ATCACTGAATAAAAAGGTGT+AGG | - | chr3_2:48948029-48948048 | Msa0408820:intron | 30.0% |
!! | TTGTAGATATAAAGCGTTGA+AGG | - | chr3_2:48948184-48948203 | Msa0408820:intron | 30.0% |
GCTTCAAAATTTCATCTTTC+AGG | + | chr3_2:48948211-48948230 | None:intergenic | 30.0% | |
!!! | TTATCCCCAGGATATTTTTT+AGG | - | chr3_2:48948631-48948650 | Msa0408820:intron | 30.0% |
!!! | TATCCCCAGGATATTTTTTA+GGG | - | chr3_2:48948632-48948651 | Msa0408820:intron | 30.0% |
GCTTCTTAATACAACAAGAA+AGG | + | chr3_2:48949082-48949101 | None:intergenic | 30.0% | |
!!! | CAAAATGGTTTTTCAGGTAA+CGG | + | chr3_2:48949379-48949398 | None:intergenic | 30.0% |
! | GAACTTCAAAATGGTTTTTC+AGG | + | chr3_2:48949385-48949404 | None:intergenic | 30.0% |
AGAAACAAGGTATAAGGAAT+GGG | - | chr3_2:48949481-48949500 | Msa0408820:intron | 30.0% | |
GTTTACTTTAACACTCCAAA+TGG | - | chr3_2:48949707-48949726 | Msa0408820:CDS | 30.0% | |
! | CTTTCTTCTTCTGCTTCTTT+TGG | + | chr3_2:48947150-48947169 | None:intergenic | 35.0% |
!! | GCTAATGAGACTGATTTTGA+TGG | - | chr3_2:48947184-48947203 | Msa0408820:CDS | 35.0% |
!! | GACTGATTTTGATGGAGAAA+AGG | - | chr3_2:48947192-48947211 | Msa0408820:CDS | 35.0% |
! | GTTTTACAAGAAACCCAACA+GGG | + | chr3_2:48947225-48947244 | None:intergenic | 35.0% |
!!! | CTGGGTTTGTTTTGTTTTTG+TGG | - | chr3_2:48947342-48947361 | Msa0408820:CDS | 35.0% |
TTATACTCTGAGTGTGTGTT+TGG | - | chr3_2:48947403-48947422 | Msa0408820:CDS | 35.0% | |
TACTGAAATGTCTGTAACAG+CGG | - | chr3_2:48947623-48947642 | Msa0408820:CDS | 35.0% | |
GCGGTTATGTACAAATATTC+AGG | - | chr3_2:48947642-48947661 | Msa0408820:CDS | 35.0% | |
TTTCACTAGGACAACCTAAT+CGG | + | chr3_2:48947670-48947689 | None:intergenic | 35.0% | |
TGTCCTAGTGAAAACATGTT+AGG | - | chr3_2:48947677-48947696 | Msa0408820:CDS | 35.0% | |
! | ATGCCTAACATGTTTTCACT+AGG | + | chr3_2:48947683-48947702 | None:intergenic | 35.0% |
AAGTCAAGAGAATGTTTACG+AGG | - | chr3_2:48947705-48947724 | Msa0408820:CDS | 35.0% | |
AACATAAATTCCTTGGGAAG+TGG | - | chr3_2:48947766-48947785 | Msa0408820:CDS | 35.0% | |
TCCAATATTCAGAGACCAAA+TGG | - | chr3_2:48947902-48947921 | Msa0408820:intron | 35.0% | |
GATAGTTATATCAACTTCGG+TGG | + | chr3_2:48948012-48948031 | None:intergenic | 35.0% | |
!! | TCCAATTAGGTTGACTGAAT+GGG | + | chr3_2:48948390-48948409 | None:intergenic | 35.0% |
!! | TTCCAATTAGGTTGACTGAA+TGG | + | chr3_2:48948391-48948410 | None:intergenic | 35.0% |
ATATAATCCACCCTATGTTC+TGG | + | chr3_2:48948589-48948608 | None:intergenic | 35.0% | |
!! | AGAACATAGGGTGGATTATA+TGG | - | chr3_2:48948588-48948607 | Msa0408820:intron | 35.0% |
!! | ATAGGGTGGATTATATGGAA+TGG | - | chr3_2:48948593-48948612 | Msa0408820:intron | 35.0% |
!! | TAGGGTGGATTATATGGAAT+GGG | - | chr3_2:48948594-48948613 | Msa0408820:intron | 35.0% |
AGACCCTAAAAAATATCCTG+GGG | + | chr3_2:48948638-48948657 | None:intergenic | 35.0% | |
CAGACCCTAAAAAATATCCT+GGG | + | chr3_2:48948639-48948658 | None:intergenic | 35.0% | |
ACAGACCCTAAAAAATATCC+TGG | + | chr3_2:48948640-48948659 | None:intergenic | 35.0% | |
!!! | GATATTTTTTAGGGTCTGTC+TGG | - | chr3_2:48948641-48948660 | Msa0408820:intron | 35.0% |
GAGTTAAGGTATGATTCTTG+CGG | + | chr3_2:48948714-48948733 | None:intergenic | 35.0% | |
!! | TACTCTTTGAAGTATGGTCT+AGG | - | chr3_2:48948806-48948825 | Msa0408820:intron | 35.0% |
! | TTTGAAGTATGGTCTAGGAA+AGG | - | chr3_2:48948811-48948830 | Msa0408820:intron | 35.0% |
AAAAAACAGATTACTCTGGG+TGG | + | chr3_2:48949041-48949060 | None:intergenic | 35.0% | |
! | ATTAAGAAGCATGTAACTGC+AGG | - | chr3_2:48949092-48949111 | Msa0408820:intron | 35.0% |
! | TTAAGAAGCATGTAACTGCA+GGG | - | chr3_2:48949093-48949112 | Msa0408820:intron | 35.0% |
! | TCTCTTGCACAATTTTCAGT+AGG | + | chr3_2:48949161-48949180 | None:intergenic | 35.0% |
TACTTCGGTCATGATGATTA+TGG | - | chr3_2:48949185-48949204 | Msa0408820:intron | 35.0% | |
GTCATGATGATTATGGATAC+TGG | - | chr3_2:48949192-48949211 | Msa0408820:intron | 35.0% | |
GATTATGATAAAGGGGATAG+TGG | - | chr3_2:48949293-48949312 | Msa0408820:intron | 35.0% | |
AGAAAGCAAATGATGAGTAC+TGG | - | chr3_2:48949339-48949358 | Msa0408820:intron | 35.0% | |
ACTTAGCTGGAACTTCAAAA+TGG | + | chr3_2:48949394-48949413 | None:intergenic | 35.0% | |
AAGTTGTACGAACAGATGTT+TGG | - | chr3_2:48949410-48949429 | Msa0408820:intron | 35.0% | |
!! | TTATACCTTGTTTCTGCATC+TGG | + | chr3_2:48949476-48949495 | None:intergenic | 35.0% |
AGATGCAGAAACAAGGTATA+AGG | - | chr3_2:48949475-48949494 | Msa0408820:intron | 35.0% | |
CAGAAACAAGGTATAAGGAA+TGG | - | chr3_2:48949480-48949499 | Msa0408820:intron | 35.0% | |
ATTCTTGCCATCATCAATCA+CGG | + | chr3_2:48949534-48949553 | None:intergenic | 35.0% | |
ATGTTAAAGTGGATCCAGAA+TGG | - | chr3_2:48949567-48949586 | Msa0408820:intron | 35.0% | |
TGAAACCTCCTATAGCATAT+TGG | - | chr3_2:48949609-48949628 | Msa0408820:intron | 35.0% | |
GTTTCAAGCCAATATGCTAT+AGG | + | chr3_2:48949620-48949639 | None:intergenic | 35.0% | |
! | TGGTTGAAAAAGTATATGCC+CGG | - | chr3_2:48949659-48949678 | Msa0408820:CDS | 35.0% |
TACCTACTATAAGGTTTACC+TGG | + | chr3_2:48949773-48949792 | None:intergenic | 35.0% | |
!!! | TGCTTCTTTTGGTGTTGTTG+TGG | + | chr3_2:48947139-48947158 | None:intergenic | 40.0% |
AAAAGGGTTATGACCCTGTT+GGG | - | chr3_2:48947209-48947228 | Msa0408820:CDS | 40.0% | |
! | CGTTTTACAAGAAACCCAAC+AGG | + | chr3_2:48947226-48947245 | None:intergenic | 40.0% |
GTTGGGTTTCTTGTAAAACG+TGG | - | chr3_2:48947226-48947245 | Msa0408820:CDS | 40.0% | |
TTGCTCAGTTTCTTCGTGAA+AGG | - | chr3_2:48947266-48947285 | Msa0408820:CDS | 40.0% | |
GTTTCTTCGTGAAAGGTTTG+TGG | - | chr3_2:48947273-48947292 | Msa0408820:CDS | 40.0% | |
CAAATATTCAGGACCCGATT+AGG | - | chr3_2:48947653-48947672 | Msa0408820:CDS | 40.0% | |
TTCACTAGGACAACCTAATC+GGG | + | chr3_2:48947669-48947688 | None:intergenic | 40.0% | |
TTACGAGGATGCTTCTTAGT+AGG | - | chr3_2:48947720-48947739 | Msa0408820:CDS | 40.0% | |
!! | ATTGAAGGTGTTCTAAGTCG+AGG | + | chr3_2:48947814-48947833 | None:intergenic | 40.0% |
CGACTTAGAACACCTTCAAT+AGG | - | chr3_2:48947814-48947833 | Msa0408820:intron | 40.0% | |
CTTAGAACACCTTCAATAGG+AGG | - | chr3_2:48947817-48947836 | Msa0408820:intron | 40.0% | |
GCCATTTGGTCTCTGAATAT+TGG | + | chr3_2:48947906-48947925 | None:intergenic | 40.0% | |
ATGATACGATGTCAGCCATT+TGG | + | chr3_2:48947920-48947939 | None:intergenic | 40.0% | |
GGCTGACATCGTATCATTTA+AGG | - | chr3_2:48947923-48947942 | Msa0408820:intron | 40.0% | |
!! | GTGAGTTACATAGCTCTGAT+AGG | - | chr3_2:48948085-48948104 | Msa0408820:intron | 40.0% |
GTTGTTCTTTCTTGGAGTGT+TGG | - | chr3_2:48948117-48948136 | Msa0408820:intron | 40.0% | |
CAAGCTGCATTCTTTCTATC+TGG | - | chr3_2:48948341-48948360 | Msa0408820:CDS | 40.0% | |
ACCCATTCAGTCAACCTAAT+TGG | - | chr3_2:48948386-48948405 | Msa0408820:intron | 40.0% | |
CGAGTCAAATGCAACTCAAA+AGG | + | chr3_2:48948518-48948537 | None:intergenic | 40.0% | |
CATACCCAATAACTCAAACC+TGG | + | chr3_2:48948557-48948576 | None:intergenic | 40.0% | |
TATCTGTCACCTGGTATTCA+GGG | - | chr3_2:48948862-48948881 | Msa0408820:intron | 40.0% | |
CTTGGGAAAACAACTGTTGA+CGG | + | chr3_2:48949015-48949034 | None:intergenic | 40.0% | |
ATTACTCTGGGTGGAAACTT+GGG | + | chr3_2:48949032-48949051 | None:intergenic | 40.0% | |
! | TAAGAAGCATGTAACTGCAG+GGG | - | chr3_2:48949094-48949113 | Msa0408820:intron | 40.0% |
!! | GCAATTACTGCTGACTTCAA+TGG | - | chr3_2:48949128-48949147 | Msa0408820:intron | 40.0% |
!! | TGTGCAAGAGAGCATTACTT+CGG | - | chr3_2:48949170-48949189 | Msa0408820:intron | 40.0% |
TCTTGAAGATAAGCTGAGAG+AGG | - | chr3_2:48949223-48949242 | Msa0408820:intron | 40.0% | |
CTTGAAGATAAGCTGAGAGA+GGG | - | chr3_2:48949224-48949243 | Msa0408820:intron | 40.0% | |
ATCTGTTCGTACAACTTAGC+TGG | + | chr3_2:48949407-48949426 | None:intergenic | 40.0% | |
GAACAGATGTTTGGTCCTAA+TGG | - | chr3_2:48949419-48949438 | Msa0408820:intron | 40.0% | |
ACATACCAGATGCAGAAACA+AGG | - | chr3_2:48949468-48949487 | Msa0408820:intron | 40.0% | |
ATCATCAATCACGGCATAAG+GGG | + | chr3_2:48949525-48949544 | None:intergenic | 40.0% | |
CATCATCAATCACGGCATAA+GGG | + | chr3_2:48949526-48949545 | None:intergenic | 40.0% | |
CGAATTCTTTCTTGCCATTC+TGG | + | chr3_2:48949584-48949603 | None:intergenic | 40.0% | |
TCAAGCCAATATGCTATAGG+AGG | + | chr3_2:48949617-48949636 | None:intergenic | 40.0% | |
!! | TATTGGCTTGAAACGCGTAA+AGG | - | chr3_2:48949626-48949645 | Msa0408820:intron | 40.0% |
TTCCTCATCTAAGCAAGTAC+AGG | - | chr3_2:48949684-48949703 | Msa0408820:CDS | 40.0% | |
TCCTCATCTAAGCAAGTACA+GGG | - | chr3_2:48949685-48949704 | Msa0408820:CDS | 40.0% | |
AGCCAGGTAAACCTTATAGT+AGG | - | chr3_2:48949768-48949787 | Msa0408820:CDS | 40.0% | |
GAAAAGGGTTATGACCCTGT+TGG | - | chr3_2:48947208-48947227 | Msa0408820:CDS | 45.0% | |
GGGGTTCAATGTAATGAGCA+CGG | - | chr3_2:48947985-48948004 | Msa0408820:intron | 45.0% | |
GCACATGAACTTCAAGGAGA+TGG | - | chr3_2:48948232-48948251 | Msa0408820:intron | 45.0% | |
AACTTCAAGGAGATGGCTTC+TGG | - | chr3_2:48948239-48948258 | Msa0408820:intron | 45.0% | |
ACTTCAAGGAGATGGCTTCT+GGG | - | chr3_2:48948240-48948259 | Msa0408820:intron | 45.0% | |
! | CAGTGCATTGCTGTGTCTTT+TGG | - | chr3_2:48948308-48948327 | Msa0408820:CDS | 45.0% |
GCTGTGCTTGTAAAGTTACG+AGG | - | chr3_2:48948490-48948509 | Msa0408820:intron | 45.0% | |
CGTCTTTATTATGTCCGTCC+AGG | - | chr3_2:48948536-48948555 | Msa0408820:intron | 45.0% | |
! | TCCGTCCAGGTTTGAGTTAT+TGG | - | chr3_2:48948549-48948568 | Msa0408820:intron | 45.0% |
CCCAATAACTCAAACCTGGA+CGG | + | chr3_2:48948553-48948572 | None:intergenic | 45.0% | |
! | CCGTCCAGGTTTGAGTTATT+GGG | - | chr3_2:48948550-48948569 | Msa0408820:intron | 45.0% |
! | AATCCACCCTATGTTCTGGA+TGG | + | chr3_2:48948585-48948604 | None:intergenic | 45.0% |
! | GATTATATGGAATGGGCTCC+AGG | - | chr3_2:48948601-48948620 | Msa0408820:intron | 45.0% |
AGTATGGTCTAGGAAAGGTC+TGG | - | chr3_2:48948816-48948835 | Msa0408820:intron | 45.0% | |
ACCTACTTCTATCTGTCACC+TGG | - | chr3_2:48948853-48948872 | Msa0408820:intron | 45.0% | |
ACCAGGTGACAGATAGAAGT+AGG | + | chr3_2:48948857-48948876 | None:intergenic | 45.0% | |
CTATCTGTCACCTGGTATTC+AGG | - | chr3_2:48948861-48948880 | Msa0408820:intron | 45.0% | |
TAGATTCGACCCTGAATACC+AGG | + | chr3_2:48948874-48948893 | None:intergenic | 45.0% | |
GATTACTCTGGGTGGAAACT+TGG | + | chr3_2:48949033-48949052 | None:intergenic | 45.0% | |
!! | TTACTGCTGACTTCAATGGC+TGG | - | chr3_2:48949132-48949151 | Msa0408820:intron | 45.0% |
!! | AATGATGAGTACTGGCAACC+AGG | - | chr3_2:48949347-48949366 | Msa0408820:intron | 45.0% |
! | TCCTAATGGACCTCAAACCA+TGG | - | chr3_2:48949433-48949452 | Msa0408820:intron | 45.0% |
! | TCCATGGTTTGAGGTCCATT+AGG | + | chr3_2:48949437-48949456 | None:intergenic | 45.0% |
! | TAATGGACCTCAAACCATGG+AGG | - | chr3_2:48949436-48949455 | Msa0408820:intron | 45.0% |
AAGGAATGGGCAGCAAAGAA+TGG | - | chr3_2:48949494-48949513 | Msa0408820:intron | 45.0% | |
CCATCATCAATCACGGCATA+AGG | + | chr3_2:48949527-48949546 | None:intergenic | 45.0% | |
CCTTATGCCGTGATTGATGA+TGG | - | chr3_2:48949524-48949543 | Msa0408820:intron | 45.0% | |
TTGCTTAGATGAGGAATGCC+GGG | + | chr3_2:48949680-48949699 | None:intergenic | 45.0% | |
CTTGCTTAGATGAGGAATGC+CGG | + | chr3_2:48949681-48949700 | None:intergenic | 45.0% | |
ACCCTGTACTTGCTTAGATG+AGG | + | chr3_2:48949689-48949708 | None:intergenic | 45.0% | |
TAACACTCCAAATGGGCCAT+TGG | - | chr3_2:48949715-48949734 | Msa0408820:CDS | 45.0% | |
CGAGGATGCTTCTTAGTAGG+AGG | - | chr3_2:48947723-48947742 | Msa0408820:CDS | 50.0% | |
GAAGCGGCACATGAACTTCA+AGG | - | chr3_2:48948226-48948245 | Msa0408820:intron | 50.0% | |
TGCATCGCCATCCAGAACAT+AGG | - | chr3_2:48948575-48948594 | Msa0408820:intron | 50.0% | |
GCATCGCCATCCAGAACATA+GGG | - | chr3_2:48948576-48948595 | Msa0408820:intron | 50.0% | |
CCTGGGGATAATGTCAAACC+TGG | + | chr3_2:48948622-48948641 | None:intergenic | 50.0% | |
CCAGGTTTGACATTATCCCC+AGG | - | chr3_2:48948619-48948638 | Msa0408820:intron | 50.0% | |
TAAGCTGAGAGAGGGAGAAG+AGG | - | chr3_2:48949232-48949251 | Msa0408820:intron | 50.0% | |
! | TTCAGGTAACGGTCTTCTCC+TGG | + | chr3_2:48949368-48949387 | None:intergenic | 50.0% |
ACCTCAAACCATGGAGGAGT+TGG | - | chr3_2:48949442-48949461 | Msa0408820:intron | 50.0% | |
CCTCAAACCATGGAGGAGTT+GGG | - | chr3_2:48949443-48949462 | Msa0408820:intron | 50.0% | |
TATGTCTCCCAACTCCTCCA+TGG | + | chr3_2:48949453-48949472 | None:intergenic | 50.0% | |
TCAATCACGGCATAAGGGGA+AGG | + | chr3_2:48949521-48949540 | None:intergenic | 50.0% | |
TGAAACGCGTAAAGGCAGGA+AGG | - | chr3_2:48949634-48949653 | Msa0408820:intron | 50.0% | |
TGCACATATGTAGCCCAAGC+AGG | + | chr3_2:48949749-48949768 | None:intergenic | 50.0% | |
! | GTTCTAAGTCGAGGCCAGCA+GGG | + | chr3_2:48947805-48947824 | None:intergenic | 55.0% |
! | TGTTCTAAGTCGAGGCCAGC+AGG | + | chr3_2:48947806-48947825 | None:intergenic | 55.0% |
TCGCCATCCAGAACATAGGG+TGG | - | chr3_2:48948579-48948598 | Msa0408820:intron | 55.0% | |
CCCAACTCCTCCATGGTTTG+AGG | + | chr3_2:48949446-48949465 | None:intergenic | 55.0% | |
GGCTTGAAACGCGTAAAGGC+AGG | - | chr3_2:48949630-48949649 | Msa0408820:intron | 55.0% | |
CTCCAAATGGGCCATTGGAG+CGG | - | chr3_2:48949720-48949739 | Msa0408820:CDS | 55.0% | |
TCCAAATGGGCCATTGGAGC+GGG | - | chr3_2:48949721-48949740 | Msa0408820:CDS | 55.0% | |
ATTGGAGCGGGTACCTGCTT+GGG | - | chr3_2:48949733-48949752 | Msa0408820:CDS | 55.0% | |
TGGGCTACATATGTGCAGCC+AGG | - | chr3_2:48949752-48949771 | Msa0408820:CDS | 55.0% | |
CGAGGTAGGACCACTTCCCA+AGG | + | chr3_2:48947779-48947798 | None:intergenic | 60.0% | |
CGCGTAAAGGCAGGAAGGCA+TGG | - | chr3_2:48949639-48949658 | Msa0408820:intron | 60.0% | |
ACCCGCTCCAATGGCCCATT+TGG | + | chr3_2:48949725-48949744 | None:intergenic | 60.0% | |
CAAGCAGGTACCCGCTCCAA+TGG | + | chr3_2:48949734-48949753 | None:intergenic | 60.0% | |
CATTGGAGCGGGTACCTGCT+TGG | - | chr3_2:48949732-48949751 | Msa0408820:CDS | 60.0% | |
GTCCTACCTCGTTGCCCTGC+TGG | - | chr3_2:48947788-48947807 | Msa0408820:CDS | 65.0% | |
GGCCAGCAGGGCAACGAGGT+AGG | + | chr3_2:48947793-48947812 | None:intergenic | 70.0% | |
TCGAGGCCAGCAGGGCAACG+AGG | + | chr3_2:48947797-48947816 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 48947130 | 48949799 | 48947130 | ID=Msa0408820;Name=Msa0408820 |
chr3_2 | mRNA | 48947130 | 48949799 | 48947130 | ID=Msa0408820-mRNA-1;Parent=Msa0408820;Name=Msa0408820-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|1|0.5|1|1|0.75|4|0|326 |
chr3_2 | exon | 48949642 | 48949799 | 48949642 | ID=Msa0408820-mRNA-1:exon:9572;Parent=Msa0408820-mRNA-1 |
chr3_2 | exon | 48948668 | 48948739 | 48948668 | ID=Msa0408820-mRNA-1:exon:9571;Parent=Msa0408820-mRNA-1 |
chr3_2 | exon | 48948307 | 48948371 | 48948307 | ID=Msa0408820-mRNA-1:exon:9570;Parent=Msa0408820-mRNA-1 |
chr3_2 | exon | 48947130 | 48947815 | 48947130 | ID=Msa0408820-mRNA-1:exon:9569;Parent=Msa0408820-mRNA-1 |
chr3_2 | CDS | 48949642 | 48949799 | 48949642 | ID=Msa0408820-mRNA-1:cds;Parent=Msa0408820-mRNA-1 |
chr3_2 | CDS | 48948668 | 48948739 | 48948668 | ID=Msa0408820-mRNA-1:cds;Parent=Msa0408820-mRNA-1 |
chr3_2 | CDS | 48948307 | 48948371 | 48948307 | ID=Msa0408820-mRNA-1:cds;Parent=Msa0408820-mRNA-1 |
chr3_2 | CDS | 48947130 | 48947815 | 48947130 | ID=Msa0408820-mRNA-1:cds;Parent=Msa0408820-mRNA-1 |
Gene Sequence |
Protein sequence |