Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411650 | XP_003600430.1 | 85.294 | 408 | 38 | 4 | 1 | 404 | 1 | 390 | 0.0 | 676 |
| Msa0411650 | XP_003600430.1 | 92.857 | 140 | 10 | 0 | 415 | 554 | 328 | 467 | 7.90e-81 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411650 | sp|F4I1X0|HIP41_ARATH | 63.452 | 197 | 72 | 0 | 44 | 240 | 20 | 216 | 1.87e-87 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411650 | G7IY67 | 85.294 | 408 | 38 | 4 | 1 | 404 | 1 | 390 | 0.0 | 676 |
| Msa0411650 | G7IY67 | 92.857 | 140 | 10 | 0 | 415 | 554 | 328 | 467 | 3.77e-81 | 271 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0364190 | Msa0411650 | 0.965904 | 3.261099e-125 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411650 | MtrunA17_Chr3g0103011 | 87.888 | 322 | 25 | 3 | 87 | 404 | 16 | 327 | 0.0 | 580 |
| Msa0411650 | MtrunA17_Chr3g0103011 | 92.857 | 140 | 10 | 0 | 415 | 554 | 265 | 404 | 4.68e-85 | 270 |
| Msa0411650 | MtrunA17_Chr5g0444781 | 49.515 | 206 | 103 | 1 | 43 | 248 | 8 | 212 | 1.79e-67 | 221 |
| Msa0411650 | MtrunA17_Chr5g0444781 | 58.824 | 51 | 21 | 0 | 43 | 93 | 257 | 307 | 1.07e-11 | 66.2 |
| Msa0411650 | MtrunA17_Chr6g0483551 | 51.759 | 199 | 95 | 1 | 43 | 240 | 4 | 202 | 2.27e-63 | 206 |
| Msa0411650 | MtrunA17_Chr6g0483571 | 51.759 | 199 | 95 | 1 | 43 | 240 | 4 | 202 | 3.01e-62 | 203 |
| Msa0411650 | MtrunA17_Chr6g0483591 | 48.990 | 198 | 101 | 0 | 43 | 240 | 4 | 201 | 6.60e-61 | 200 |
| Msa0411650 | MtrunA17_Chr2g0290801 | 45.729 | 199 | 107 | 1 | 43 | 240 | 41 | 239 | 4.80e-55 | 186 |
| Msa0411650 | MtrunA17_Chr5g0444791 | 42.667 | 150 | 79 | 2 | 93 | 240 | 16 | 160 | 2.21e-31 | 121 |
| Msa0411650 | MtrunA17_Chr3g0103001 | 97.778 | 45 | 1 | 0 | 42 | 86 | 34 | 78 | 4.46e-25 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411650 | AT1G55790.1 | 63.452 | 197 | 72 | 0 | 44 | 240 | 20 | 216 | 5.35e-90 | 283 |
| Msa0411650 | AT4G26485.1 | 50.249 | 201 | 97 | 2 | 43 | 240 | 6 | 206 | 1.43e-61 | 202 |
| Msa0411650 | AT1G55803.1 | 70.909 | 110 | 32 | 0 | 44 | 153 | 18 | 127 | 8.15e-52 | 173 |
| Msa0411650 | AT5G56075.1 | 44.828 | 203 | 92 | 3 | 42 | 240 | 64 | 250 | 4.03e-49 | 171 |
| Msa0411650 | AT5G25030.1 | 40.500 | 200 | 104 | 3 | 42 | 240 | 6 | 191 | 2.94e-43 | 153 |
| Msa0411650 | AT5G56060.1 | 43.421 | 152 | 82 | 3 | 83 | 232 | 2 | 151 | 2.81e-34 | 128 |
| Msa0411650 | AT1G55800.1 | 54.762 | 84 | 38 | 0 | 157 | 240 | 11 | 94 | 2.84e-25 | 105 |
| Msa0411650 | AT2G11045.1 | 34.810 | 158 | 62 | 5 | 87 | 240 | 14 | 134 | 1.28e-16 | 77.0 |
Find 110 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAACACTTCTATGTATTTC+TGG | 0.172810 | 3_2:-54041160 | None:intergenic |
| GCAACAATTCCATGTATTTC+TGG | 0.177305 | 3_2:-54041040 | None:intergenic |
| CTTTCTATTGCTAAAGCTTT+TGG | 0.202112 | 3_2:+54038789 | Msa0411650:CDS |
| CATTTCTGCAAGGTTCTTCT+TGG | 0.252563 | 3_2:-54041456 | None:intergenic |
| CAATAATGTGTGACCCATTT+TGG | 0.277098 | 3_2:-54038717 | None:intergenic |
| AAGTCAAATTCTGATCTAAT+TGG | 0.285572 | 3_2:-54040854 | None:intergenic |
| TAATTCTTCTAAATTTGATT+TGG | 0.304342 | 3_2:-54039912 | None:intergenic |
| CTCTGAATCTCTTCATGAAA+TGG | 0.318699 | 3_2:-54040713 | None:intergenic |
| AACAAAGTGAGGGACCAAAA+TGG | 0.365793 | 3_2:+54038703 | Msa0411650:CDS |
| TTTAGAAGAATTACAGAAGC+TGG | 0.370623 | 3_2:+54039922 | Msa0411650:CDS |
| TCAGAATTTGACTTGAGAAA+TGG | 0.370628 | 3_2:+54040863 | Msa0411650:CDS |
| CTAATTGGTTCATTCAACTT+TGG | 0.381796 | 3_2:-54040839 | None:intergenic |
| GAGGCTCTGTTAGAGAATAT+TGG | 0.385290 | 3_2:-54041297 | None:intergenic |
| AGAATGCATGTAACATGCTT+AGG | 0.387863 | 3_2:+54040411 | Msa0411650:CDS |
| CTTGGAAATAGCTTGGCCTC+TGG | 0.389281 | 3_2:-54041438 | None:intergenic |
| CCTCGTTTGTTGTTGTAACC+TGG | 0.390809 | 3_2:-54040560 | None:intergenic |
| CTATATGATTTCCCCTCAAA+TGG | 0.396400 | 3_2:-54040667 | None:intergenic |
| TATTGGCAATTAGTTGGCTT+TGG | 0.397066 | 3_2:-54041280 | None:intergenic |
| TCCCGTTGTCTTCCTTCCTA+TGG | 0.399554 | 3_2:-54040051 | None:intergenic |
| TCTTAGAAGAACAATGGATA+TGG | 0.401561 | 3_2:+54041318 | Msa0411650:CDS |
| AGAGAATATTGGCAATTAGT+TGG | 0.405723 | 3_2:-54041286 | None:intergenic |
| GTGAATTTAAAGGATGCATA+TGG | 0.407557 | 3_2:+54040367 | Msa0411650:intron |
| CACGAAAATCAAAGAAGAAA+AGG | 0.408183 | 3_2:+54038598 | Msa0411650:CDS |
| GGAAGATAGTTGAGATCAAC+TGG | 0.409488 | 3_2:-54040755 | None:intergenic |
| ATATCCATTGTTCTTCTAAG+AGG | 0.427874 | 3_2:-54041316 | None:intergenic |
| TTTGGAAGATGAAATGGAAA+TGG | 0.428273 | 3_2:-54038570 | None:intergenic |
| TTGGAAATAGCTTGGCCTCT+GGG | 0.443590 | 3_2:-54041437 | None:intergenic |
| CTGCACTTACCGAGAGGAAA+GGG | 0.452267 | 3_2:-54040605 | None:intergenic |
| TTCCTTCAAAGGCTTTGTAT+TGG | 0.454978 | 3_2:-54041378 | None:intergenic |
| GGCATGTTTGGAAGATGAAA+TGG | 0.455091 | 3_2:-54038576 | None:intergenic |
| ACAAAGTGAGGGACCAAAAT+GGG | 0.459560 | 3_2:+54038704 | Msa0411650:CDS |
| TTCAACAAGGAAGATTATCC+AGG | 0.465047 | 3_2:+54040542 | Msa0411650:CDS |
| CATTGTCAGAAAGCTTTGCT+TGG | 0.465996 | 3_2:-54040504 | None:intergenic |
| TACCAATACAAAGCCTTTGA+AGG | 0.469821 | 3_2:+54041376 | Msa0411650:CDS |
| CTACACCTCCTTTCAATGAC+TGG | 0.471883 | 3_2:+54040465 | Msa0411650:CDS |
| GACACAAGACACTCGAAGAT+TGG | 0.476240 | 3_2:+54040979 | Msa0411650:CDS |
| GACACAAGACACTCGAAGAT+TGG | 0.476240 | 3_2:+54041219 | Msa0411650:CDS |
| ATAACTTGAGCTTCCTTCAA+AGG | 0.483534 | 3_2:-54041389 | None:intergenic |
| ATATTCAACTTTCCTCATGC+AGG | 0.489206 | 3_2:+54040025 | Msa0411650:CDS |
| GCTTCTTCACTTGACACCTA+TGG | 0.491777 | 3_2:+54038831 | Msa0411650:CDS |
| TGATCATCAAATACTGTTAG+TGG | 0.493099 | 3_2:+54038743 | Msa0411650:CDS |
| AACAGCAATGAAATTTCATC+CGG | 0.495766 | 3_2:+54039973 | Msa0411650:CDS |
| CAATCGTGGCCAGAAATACA+TGG | 0.497125 | 3_2:+54041031 | Msa0411650:CDS |
| CTCCTATGTCACTTGGTGCT+AGG | 0.500523 | 3_2:+54041344 | Msa0411650:CDS |
| GAATGCATGTAACATGCTTA+GGG | 0.503530 | 3_2:+54040412 | Msa0411650:CDS |
| GGTTCTTCTTGGAAATAGCT+TGG | 0.504286 | 3_2:-54041445 | None:intergenic |
| AACATCATCAACAACAAGAA+TGG | 0.509999 | 3_2:+54038655 | Msa0411650:CDS |
| CTGGGAGCATACGTGTTACA+TGG | 0.511436 | 3_2:+54039941 | Msa0411650:CDS |
| ACGAAAATCAAAGAAGAAAA+GGG | 0.511822 | 3_2:+54038599 | Msa0411650:CDS |
| TCCATAGGAAGGAAGACAAC+GGG | 0.514619 | 3_2:+54040050 | Msa0411650:CDS |
| AGGGTGTGTAAGAAGAAACT+AGG | 0.515022 | 3_2:+54038618 | Msa0411650:CDS |
| TAGTTGAGATCAACTGGAGC+TGG | 0.515891 | 3_2:-54040749 | None:intergenic |
| ATGTCACTTGGTGCTAGGAA+TGG | 0.519422 | 3_2:+54041349 | Msa0411650:CDS |
| TTTGGAAATAAACTTGTTCG+AGG | 0.521347 | 3_2:-54040776 | None:intergenic |
| TCTCTGTTGAAAACTCTCCT+AGG | 0.524699 | 3_2:-54041544 | None:intergenic |
| ATTGTTGCTTGTTCAGCTGA+TGG | 0.527509 | 3_2:+54041055 | Msa0411650:CDS |
| ATGGATACAATCCGATCTCA+AGG | 0.528394 | 3_2:+54040882 | Msa0411650:CDS |
| AGAAGATGAAGAACAAAGTG+AGG | 0.531669 | 3_2:+54038692 | Msa0411650:CDS |
| GACACAAGACACTCGAAGAA+TGG | 0.531857 | 3_2:+54041099 | Msa0411650:CDS |
| TTGTTGATCTCCCTTGAGAT+CGG | 0.534047 | 3_2:-54040893 | None:intergenic |
| TCGAAGATTGGTACCACCAA+TGG | 0.536783 | 3_2:+54040991 | Msa0411650:CDS |
| TTAGAAGAATTACAGAAGCT+GGG | 0.537700 | 3_2:+54039923 | Msa0411650:CDS |
| TCGAAGATTGGTAGCACCAA+TGG | 0.540226 | 3_2:+54041231 | Msa0411650:CDS |
| CTTCTATGTATTTCTGGCCA+CGG | 0.548553 | 3_2:-54041154 | None:intergenic |
| ATGGCTCCTCCTATGTCACT+TGG | 0.548812 | 3_2:+54041337 | Msa0411650:CDS |
| AGTGTTGCTTGTTCTGCTGA+CGG | 0.551401 | 3_2:+54040935 | Msa0411650:CDS |
| CAAATACTGTTAGTGGGTGA+TGG | 0.554164 | 3_2:+54038750 | Msa0411650:CDS |
| TGTGATGACCCCTTTCCTCT+CGG | 0.554223 | 3_2:+54040596 | Msa0411650:CDS |
| TCGAAGAATGGTACCACCAA+TGG | 0.557116 | 3_2:+54041111 | Msa0411650:CDS |
| GATCATCAAATACTGTTAGT+GGG | 0.567279 | 3_2:+54038744 | Msa0411650:CDS |
| AGTGTTGCTTGTTCTGCTGA+CGG | 0.567896 | 3_2:+54041175 | Msa0411650:CDS |
| GGGTGTGTAAGAAGAAACTA+GGG | 0.570806 | 3_2:+54038619 | Msa0411650:CDS |
| GGTACAATGCTGAAGTGCCT+AGG | 0.572648 | 3_2:+54041527 | Msa0411650:CDS |
| TCATGCAGGTTTCCATAGGA+AGG | 0.577731 | 3_2:+54040039 | Msa0411650:CDS |
| TCAAAAGAGTGACTTGGCAT+CGG | 0.578839 | 3_2:-54041481 | None:intergenic |
| GATTGCAATGACTCCATTGG+TGG | 0.580976 | 3_2:-54041004 | None:intergenic |
| GATTGCAATGACTCCATTGG+TGG | 0.580976 | 3_2:-54041124 | None:intergenic |
| CATTGCAATCTCTGCAACCG+TGG | 0.581815 | 3_2:+54041137 | Msa0411650:CDS |
| GCTGCACTTACCGAGAGGAA+AGG | 0.583209 | 3_2:-54040606 | None:intergenic |
| TTCCTCATGCAGGTTTCCAT+AGG | 0.587250 | 3_2:+54040035 | Msa0411650:CDS |
| CATTGCAATCTCTGCAGTCG+TGG | 0.588803 | 3_2:+54041257 | Msa0411650:CDS |
| TGTAACATGCTTAGGGCCAA+TGG | 0.590266 | 3_2:+54040419 | Msa0411650:CDS |
| AGAGATTGCAATGACTCCAT+TGG | 0.590872 | 3_2:-54041007 | None:intergenic |
| AGAGATTGCAATGACTCCAT+TGG | 0.590872 | 3_2:-54041127 | None:intergenic |
| TTCCTAGCACCAAGTGACAT+AGG | 0.592858 | 3_2:-54041346 | None:intergenic |
| TTTGGAAAGTGATTTGTCTG+AGG | 0.595111 | 3_2:-54040821 | None:intergenic |
| AGAGATTGCAATGACTCCAT+TGG | 0.595790 | 3_2:-54041247 | None:intergenic |
| AGCATACGTGTTACATGGAG+TGG | 0.600625 | 3_2:+54039946 | Msa0411650:CDS |
| CATTGCAATCTCTGCAATCG+TGG | 0.603833 | 3_2:+54041017 | Msa0411650:CDS |
| GGCATCGGAGCATTTCTGCA+AGG | 0.605774 | 3_2:-54041466 | None:intergenic |
| ATCATCAACAACAAGAATGG+TGG | 0.606215 | 3_2:+54038658 | Msa0411650:CDS |
| GAAGATGAAGAACAAAGTGA+GGG | 0.608310 | 3_2:+54038693 | Msa0411650:CDS |
| AGAGCCTCTTAGAAGAACAA+TGG | 0.616981 | 3_2:+54041312 | Msa0411650:CDS |
| GCTATATCAAAAGAGTGACT+TGG | 0.620725 | 3_2:-54041487 | None:intergenic |
| ATTGACATGAATCTCACCAT+TGG | 0.626240 | 3_2:-54040435 | None:intergenic |
| AACAATGTGACAGAAATACA+TGG | 0.628085 | 3_2:+54040911 | Msa0411650:CDS |
| TAGCAAGGTATGACTTAGAG+AGG | 0.645712 | 3_2:+54041506 | Msa0411650:CDS |
| TGGATACAATCCGATCTCAA+GGG | 0.656266 | 3_2:+54040883 | Msa0411650:CDS |
| TGCACTTACCGAGAGGAAAG+GGG | 0.664703 | 3_2:-54040604 | None:intergenic |
| TTCCTATGGAAACCTGCATG+AGG | 0.665648 | 3_2:-54040037 | None:intergenic |
| CCAGGTTACAACAACAAACG+AGG | 0.674784 | 3_2:+54040560 | Msa0411650:CDS |
| TTCCATAGGAAGGAAGACAA+CGG | 0.683840 | 3_2:+54040049 | Msa0411650:CDS |
| CTAGCACCAAGTGACATAGG+AGG | 0.695137 | 3_2:-54041343 | None:intergenic |
| TGACTGCATTGATTTCAACA+AGG | 0.696255 | 3_2:+54040529 | Msa0411650:CDS |
| ATGCATATGGATCTCGTGTG+TGG | 0.696986 | 3_2:+54040380 | Msa0411650:CDS |
| AAAGTGCTGCACTTACCGAG+AGG | 0.719258 | 3_2:-54040611 | None:intergenic |
| AACTTTACAGAAATGCCCAG+AGG | 0.755780 | 3_2:+54041422 | Msa0411650:CDS |
| GTGTCATATCACGAGCACAG+CGG | 0.780514 | 3_2:-54040961 | None:intergenic |
| GTGTCATATCACGAGCACAG+CGG | 0.780514 | 3_2:-54041081 | None:intergenic |
| GTGTCATATCACGAGCACAG+CGG | 0.780514 | 3_2:-54041201 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATGTTATAGTATAAT+GGG | + | chr3_2:54038991-54039010 | Msa0411650:intron | 10.0% |
| !!! | TAATTAACATATTTCTAAAT+AGG | - | chr3_2:54040275-54040294 | None:intergenic | 10.0% |
| !! | GAAATAATGTTATAGTATAA+TGG | + | chr3_2:54038990-54039009 | Msa0411650:intron | 15.0% |
| !! | CAAATTTCTTAAATTGTTTA+TGG | - | chr3_2:54039163-54039182 | None:intergenic | 15.0% |
| !! | GAAACAATATAAAATACTAA+AGG | - | chr3_2:54039461-54039480 | None:intergenic | 15.0% |
| !! | TAATTCTTCTAAATTTGATT+TGG | - | chr3_2:54039915-54039934 | None:intergenic | 15.0% |
| !! | AGAAATATGTTAATTATCTT+TGG | + | chr3_2:54040279-54040298 | Msa0411650:intron | 15.0% |
| !!! | CTATTTAAGCATTGTAAATA+GGG | - | chr3_2:54038880-54038899 | None:intergenic | 20.0% |
| !!! | ACTATTTAAGCATTGTAAAT+AGG | - | chr3_2:54038881-54038900 | None:intergenic | 20.0% |
| !! | TTTAACACTAAACAAAAAAG+GGG | - | chr3_2:54038931-54038950 | None:intergenic | 20.0% |
| !! | CTTTAACACTAAACAAAAAA+GGG | - | chr3_2:54038932-54038951 | None:intergenic | 20.0% |
| !! | ACTTTAACACTAAACAAAAA+AGG | - | chr3_2:54038933-54038952 | None:intergenic | 20.0% |
| !!! | TAAAGTTTTGATCTTTGAAT+TGG | + | chr3_2:54038947-54038966 | Msa0411650:intron | 20.0% |
| !!! | CTACATAGTTATTTCTTAAT+TGG | + | chr3_2:54039288-54039307 | Msa0411650:intron | 20.0% |
| !! | TATATTGTTTCAAAACCATT+AGG | + | chr3_2:54039470-54039489 | Msa0411650:intron | 20.0% |
| !!! | AGTTTTTTTCTTATCTAATG+TGG | + | chr3_2:54039671-54039690 | Msa0411650:intron | 20.0% |
| !! | ACTTGTGCATAATAATAAAA+GGG | - | chr3_2:54040231-54040250 | None:intergenic | 20.0% |
| !!! | CAATTGAATTGATTCATTTT+TGG | - | chr3_2:54040797-54040816 | None:intergenic | 20.0% |
| ! | ACGAAAATCAAAGAAGAAAA+GGG | + | chr3_2:54038599-54038618 | Msa0411650:CDS | 25.0% |
| !!! | GGTTTGATTTTTTGATATTG+TGG | + | chr3_2:54039012-54039031 | Msa0411650:intron | 25.0% |
| !!! | TTGATTTTTTGATATTGTGG+TGG | + | chr3_2:54039015-54039034 | Msa0411650:intron | 25.0% |
| ! | ATCAAAAGCTTGAAATAACA+AGG | - | chr3_2:54039522-54039541 | None:intergenic | 25.0% |
| !! | TTCCAATTGTTCACAATTTT+TGG | + | chr3_2:54039546-54039565 | Msa0411650:intron | 25.0% |
| !! | TCCAATTGTTCACAATTTTT+GGG | + | chr3_2:54039547-54039566 | Msa0411650:intron | 25.0% |
| !! | TTGAGTACTTTTAAACACTT+TGG | + | chr3_2:54040130-54040149 | Msa0411650:intron | 25.0% |
| ! | CTTGTGCATAATAATAAAAG+GGG | - | chr3_2:54040230-54040249 | None:intergenic | 25.0% |
| ! | GACTTGTGCATAATAATAAA+AGG | - | chr3_2:54040232-54040251 | None:intergenic | 25.0% |
| ! | ATCTTTGGTTATCATAGTTA+AGG | + | chr3_2:54040294-54040313 | Msa0411650:intron | 25.0% |
| !! | AAATGGTTTTTCATACTTCT+AGG | - | chr3_2:54040653-54040672 | None:intergenic | 25.0% |
| ! | AAGTATGAAAAACCATTTGA+GGG | + | chr3_2:54040655-54040674 | Msa0411650:CDS | 25.0% |
| ! | AAGTCAAATTCTGATCTAAT+TGG | - | chr3_2:54040857-54040876 | None:intergenic | 25.0% |
| TTTGGAAGATGAAATGGAAA+TGG | - | chr3_2:54038573-54038592 | None:intergenic | 30.0% | |
| !! | CTTTTCTTCTTTGATTTTCG+TGG | - | chr3_2:54038600-54038619 | None:intergenic | 30.0% |
| CACGAAAATCAAAGAAGAAA+AGG | + | chr3_2:54038598-54038617 | Msa0411650:CDS | 30.0% | |
| AACATCATCAACAACAAGAA+TGG | + | chr3_2:54038655-54038674 | Msa0411650:CDS | 30.0% | |
| TGATCATCAAATACTGTTAG+TGG | + | chr3_2:54038743-54038762 | Msa0411650:CDS | 30.0% | |
| GATCATCAAATACTGTTAGT+GGG | + | chr3_2:54038744-54038763 | Msa0411650:CDS | 30.0% | |
| ! | CTTTCTATTGCTAAAGCTTT+TGG | + | chr3_2:54038789-54038808 | Msa0411650:CDS | 30.0% |
| !!! | TGGATGCATGTTTTTTTAGT+TGG | + | chr3_2:54038967-54038986 | Msa0411650:intron | 30.0% |
| !!! | GGATGCATGTTTTTTTAGTT+GGG | + | chr3_2:54038968-54038987 | Msa0411650:intron | 30.0% |
| !! | GCATTGTTTCTTTGAAATGA+AGG | + | chr3_2:54039095-54039114 | Msa0411650:intron | 30.0% |
| TGTAAATGTCGTATTAGCAT+TGG | + | chr3_2:54039199-54039218 | Msa0411650:intron | 30.0% | |
| AACCTCTACATTGTAATTTG+TGG | + | chr3_2:54039361-54039380 | Msa0411650:intron | 30.0% | |
| AACCACAAATTACAATGTAG+AGG | - | chr3_2:54039366-54039385 | None:intergenic | 30.0% | |
| CAAGGAAAATGACAAATTTG+AGG | - | chr3_2:54039504-54039523 | None:intergenic | 30.0% | |
| TCCCAAAAATTGTGAACAAT+TGG | - | chr3_2:54039551-54039570 | None:intergenic | 30.0% | |
| !!! | CTAATGTGGTATAGTTTTGA+AGG | + | chr3_2:54039685-54039704 | Msa0411650:intron | 30.0% |
| ! | TGGTTGCTTTGAATGAAAAT+AGG | + | chr3_2:54039712-54039731 | Msa0411650:intron | 30.0% |
| TTTAGAAGAATTACAGAAGC+TGG | + | chr3_2:54039922-54039941 | Msa0411650:CDS | 30.0% | |
| TTAGAAGAATTACAGAAGCT+GGG | + | chr3_2:54039923-54039942 | Msa0411650:CDS | 30.0% | |
| AACAGCAATGAAATTTCATC+CGG | + | chr3_2:54039973-54039992 | Msa0411650:CDS | 30.0% | |
| TTCATCCGGATTTAAAAATG+CGG | + | chr3_2:54039987-54040006 | Msa0411650:CDS | 30.0% | |
| !! | TACTTTTAAACACTTTGGAG+TGG | + | chr3_2:54040135-54040154 | Msa0411650:intron | 30.0% |
| TTATTATGCACAAGTCTGTA+CGG | + | chr3_2:54040236-54040255 | Msa0411650:intron | 30.0% | |
| GTGTTTCCTTGTGAATTTAA+AGG | + | chr3_2:54040357-54040376 | Msa0411650:intron | 30.0% | |
| ATGCATCCTTTAAATTCACA+AGG | - | chr3_2:54040366-54040385 | None:intergenic | 30.0% | |
| GTGAATTTAAAGGATGCATA+TGG | + | chr3_2:54040367-54040386 | Msa0411650:intron | 30.0% | |
| ! | TCAATTTTCCAGTCATTGAA+AGG | - | chr3_2:54040476-54040495 | None:intergenic | 30.0% |
| GAAGTATGAAAAACCATTTG+AGG | + | chr3_2:54040654-54040673 | Msa0411650:CDS | 30.0% | |
| AGTATGAAAAACCATTTGAG+GGG | + | chr3_2:54040656-54040675 | Msa0411650:CDS | 30.0% | |
| ! | TTTGGAAATAAACTTGTTCG+AGG | - | chr3_2:54040779-54040798 | None:intergenic | 30.0% |
| ! | CTAATTGGTTCATTCAACTT+TGG | - | chr3_2:54040842-54040861 | None:intergenic | 30.0% |
| !! | TCAGAATTTGACTTGAGAAA+TGG | + | chr3_2:54040863-54040882 | Msa0411650:CDS | 30.0% |
| AACAATGTGACAGAAATACA+TGG | + | chr3_2:54040911-54040930 | Msa0411650:CDS | 30.0% | |
| AGAGAATATTGGCAATTAGT+TGG | - | chr3_2:54041289-54041308 | None:intergenic | 30.0% | |
| ATATCCATTGTTCTTCTAAG+AGG | - | chr3_2:54041319-54041338 | None:intergenic | 30.0% | |
| TCTTAGAAGAACAATGGATA+TGG | + | chr3_2:54041318-54041337 | Msa0411650:CDS | 30.0% | |
| !! | TTTGATTTTCGTGGCATGTT+TGG | - | chr3_2:54038591-54038610 | None:intergenic | 35.0% |
| ATCATCAACAACAAGAATGG+TGG | + | chr3_2:54038658-54038677 | Msa0411650:CDS | 35.0% | |
| AGAAGATGAAGAACAAAGTG+AGG | + | chr3_2:54038692-54038711 | Msa0411650:CDS | 35.0% | |
| GAAGATGAAGAACAAAGTGA+GGG | + | chr3_2:54038693-54038712 | Msa0411650:CDS | 35.0% | |
| ! | CAATAATGTGTGACCCATTT+TGG | - | chr3_2:54038720-54038739 | None:intergenic | 35.0% |
| !! | TTCTTTGAAATGAAGGTGCA+TGG | + | chr3_2:54039102-54039121 | Msa0411650:intron | 35.0% |
| !! | TGTCGTATTAGCATTGGTTT+AGG | + | chr3_2:54039205-54039224 | Msa0411650:intron | 35.0% |
| !! | GTCGTATTAGCATTGGTTTA+GGG | + | chr3_2:54039206-54039225 | Msa0411650:intron | 35.0% |
| ! | GGTTTAAAGTTTACCGTTGA+AGG | + | chr3_2:54039227-54039246 | Msa0411650:intron | 35.0% |
| ! | TTGTGTTCAATCTGAAGTGT+CGG | + | chr3_2:54039263-54039282 | Msa0411650:intron | 35.0% |
| TACAATGTAGAGGTTAACCA+TGG | - | chr3_2:54039356-54039375 | None:intergenic | 35.0% | |
| CTAGACTCGTAAGTCATAAA+TGG | - | chr3_2:54039410-54039429 | None:intergenic | 35.0% | |
| TTTGAGGAGTTCATTCCTAA+TGG | - | chr3_2:54039488-54039507 | None:intergenic | 35.0% | |
| !!! | GCATGGTGATGTATTTTGAT+TGG | + | chr3_2:54039585-54039604 | Msa0411650:intron | 35.0% |
| AGCAATGTGGCAAAATTTGA+CGG | - | chr3_2:54039806-54039825 | None:intergenic | 35.0% | |
| !! | TTTGATTTTGCAGAGCAATG+TGG | - | chr3_2:54039819-54039838 | None:intergenic | 35.0% |
| TCTGCAAAATCAAAATGCTC+TGG | + | chr3_2:54039825-54039844 | Msa0411650:intron | 35.0% | |
| ! | AACCTCCGCATTTTTAAATC+CGG | - | chr3_2:54039995-54040014 | None:intergenic | 35.0% |
| ATATTCAACTTTCCTCATGC+AGG | + | chr3_2:54040025-54040044 | Msa0411650:CDS | 35.0% | |
| AGAATGCATGTAACATGCTT+AGG | + | chr3_2:54040411-54040430 | Msa0411650:CDS | 35.0% | |
| GAATGCATGTAACATGCTTA+GGG | + | chr3_2:54040412-54040431 | Msa0411650:CDS | 35.0% | |
| ATTGACATGAATCTCACCAT+TGG | - | chr3_2:54040438-54040457 | None:intergenic | 35.0% | |
| ! | ATTTTCCAGTCATTGAAAGG+AGG | - | chr3_2:54040473-54040492 | None:intergenic | 35.0% |
| !! | TGACTGCATTGATTTCAACA+AGG | + | chr3_2:54040529-54040548 | Msa0411650:CDS | 35.0% |
| TTCAACAAGGAAGATTATCC+AGG | + | chr3_2:54040542-54040561 | Msa0411650:CDS | 35.0% | |
| CTATATGATTTCCCCTCAAA+TGG | - | chr3_2:54040670-54040689 | None:intergenic | 35.0% | |
| CTCTGAATCTCTTCATGAAA+TGG | - | chr3_2:54040716-54040735 | None:intergenic | 35.0% | |
| ! | TTTGGAAAGTGATTTGTCTG+AGG | - | chr3_2:54040824-54040843 | None:intergenic | 35.0% |
| GCAACAATTCCATGTATTTC+TGG | - | chr3_2:54041043-54041062 | None:intergenic | 35.0% | |
| GCAACACTTCTATGTATTTC+TGG | - | chr3_2:54041163-54041182 | None:intergenic | 35.0% | |
| ! | TATTGGCAATTAGTTGGCTT+TGG | - | chr3_2:54041283-54041302 | None:intergenic | 35.0% |
| TACCAATACAAAGCCTTTGA+AGG | + | chr3_2:54041376-54041395 | Msa0411650:CDS | 35.0% | |
| ! | TTCCTTCAAAGGCTTTGTAT+TGG | - | chr3_2:54041381-54041400 | None:intergenic | 35.0% |
| ATAACTTGAGCTTCCTTCAA+AGG | - | chr3_2:54041392-54041411 | None:intergenic | 35.0% | |
| GCTATATCAAAAGAGTGACT+TGG | - | chr3_2:54041490-54041509 | None:intergenic | 35.0% | |
| ! | GTCACTCTTTTGATATAGCA+AGG | + | chr3_2:54041491-54041510 | Msa0411650:CDS | 35.0% |
| GGCATGTTTGGAAGATGAAA+TGG | - | chr3_2:54038579-54038598 | None:intergenic | 40.0% | |
| AGGGTGTGTAAGAAGAAACT+AGG | + | chr3_2:54038618-54038637 | Msa0411650:CDS | 40.0% | |
| GGGTGTGTAAGAAGAAACTA+GGG | + | chr3_2:54038619-54038638 | Msa0411650:CDS | 40.0% | |
| AACAAAGTGAGGGACCAAAA+TGG | + | chr3_2:54038703-54038722 | Msa0411650:CDS | 40.0% | |
| ACAAAGTGAGGGACCAAAAT+GGG | + | chr3_2:54038704-54038723 | Msa0411650:CDS | 40.0% | |
| ! | CAAATACTGTTAGTGGGTGA+TGG | + | chr3_2:54038750-54038769 | Msa0411650:CDS | 40.0% |
| !! | GTGGTGGTGTTATTTCATTG+TGG | + | chr3_2:54039031-54039050 | Msa0411650:intron | 40.0% |
| ATTCAGTGACATGCCTTCAA+CGG | - | chr3_2:54039243-54039262 | None:intergenic | 40.0% | |
| AATGTAGAGGTTAACCATGG+TGG | - | chr3_2:54039353-54039372 | None:intergenic | 40.0% | |
| GTAGTGTGTCTCAATGAACT+TGG | + | chr3_2:54039616-54039635 | Msa0411650:intron | 40.0% | |
| !!! | GGTATAGTTTTGAAGGTGCT+TGG | + | chr3_2:54039692-54039711 | Msa0411650:intron | 40.0% |
| ATCACCTCATCTACATGAAC+AGG | - | chr3_2:54039875-54039894 | None:intergenic | 40.0% | |
| ATCCGGATTTAAAAATGCGG+AGG | + | chr3_2:54039990-54040009 | Msa0411650:CDS | 40.0% | |
| TTCCATAGGAAGGAAGACAA+CGG | + | chr3_2:54040049-54040068 | Msa0411650:CDS | 40.0% | |
| CATTGTCAGAAAGCTTTGCT+TGG | - | chr3_2:54040507-54040526 | None:intergenic | 40.0% | |
| GGAAGATAGTTGAGATCAAC+TGG | - | chr3_2:54040758-54040777 | None:intergenic | 40.0% | |
| ATGGATACAATCCGATCTCA+AGG | + | chr3_2:54040882-54040901 | Msa0411650:CDS | 40.0% | |
| TGGATACAATCCGATCTCAA+GGG | + | chr3_2:54040883-54040902 | Msa0411650:CDS | 40.0% | |
| TTGTTGATCTCCCTTGAGAT+CGG | - | chr3_2:54040896-54040915 | None:intergenic | 40.0% | |
| AGAGATTGCAATGACTCCAT+TGG | - | chr3_2:54041010-54041029 | None:intergenic | 40.0% | |
| ! | ATTGTTGCTTGTTCAGCTGA+TGG | + | chr3_2:54041055-54041074 | Msa0411650:CDS | 40.0% |
| AGAGATTGCAATGACTCCAT+TGG | - | chr3_2:54041010-54041029 | None:intergenic | 40.0% | |
| !! | CTTCTATGTATTTCTGGCCA+CGG | - | chr3_2:54041157-54041176 | None:intergenic | 40.0% |
| AGAGATTGCAATGACTCCAT+TGG | - | chr3_2:54041010-54041029 | None:intergenic | 40.0% | |
| GAGGCTCTGTTAGAGAATAT+TGG | - | chr3_2:54041300-54041319 | None:intergenic | 40.0% | |
| AGAGCCTCTTAGAAGAACAA+TGG | + | chr3_2:54041312-54041331 | Msa0411650:CDS | 40.0% | |
| AACTTTACAGAAATGCCCAG+AGG | + | chr3_2:54041422-54041441 | Msa0411650:CDS | 40.0% | |
| GGTTCTTCTTGGAAATAGCT+TGG | - | chr3_2:54041448-54041467 | None:intergenic | 40.0% | |
| CATTTCTGCAAGGTTCTTCT+TGG | - | chr3_2:54041459-54041478 | None:intergenic | 40.0% | |
| ! | TCAAAAGAGTGACTTGGCAT+CGG | - | chr3_2:54041484-54041503 | None:intergenic | 40.0% |
| TAGCAAGGTATGACTTAGAG+AGG | + | chr3_2:54041506-54041525 | Msa0411650:CDS | 40.0% | |
| TCTCTGTTGAAAACTCTCCT+AGG | - | chr3_2:54041547-54041566 | None:intergenic | 40.0% | |
| GCTTCTTCACTTGACACCTA+TGG | + | chr3_2:54038831-54038850 | Msa0411650:CDS | 45.0% | |
| TGGCAGCAACTTTCTTCGAT+TGG | - | chr3_2:54039333-54039352 | None:intergenic | 45.0% | |
| CCTCATCTACATGAACAGGA+GGG | - | chr3_2:54039871-54039890 | None:intergenic | 45.0% | |
| ACCTCATCTACATGAACAGG+AGG | - | chr3_2:54039872-54039891 | None:intergenic | 45.0% | |
| AGCATACGTGTTACATGGAG+TGG | + | chr3_2:54039946-54039965 | Msa0411650:CDS | 45.0% | |
| TTCCTCATGCAGGTTTCCAT+AGG | + | chr3_2:54040035-54040054 | Msa0411650:CDS | 45.0% | |
| TTCCTATGGAAACCTGCATG+AGG | - | chr3_2:54040040-54040059 | None:intergenic | 45.0% | |
| TCATGCAGGTTTCCATAGGA+AGG | + | chr3_2:54040039-54040058 | Msa0411650:CDS | 45.0% | |
| TCCATAGGAAGGAAGACAAC+GGG | + | chr3_2:54040050-54040069 | Msa0411650:CDS | 45.0% | |
| ATGCATATGGATCTCGTGTG+TGG | + | chr3_2:54040380-54040399 | Msa0411650:CDS | 45.0% | |
| TGTAACATGCTTAGGGCCAA+TGG | + | chr3_2:54040419-54040438 | Msa0411650:CDS | 45.0% | |
| CTACACCTCCTTTCAATGAC+TGG | + | chr3_2:54040465-54040484 | Msa0411650:CDS | 45.0% | |
| !! | CCTCGTTTGTTGTTGTAACC+TGG | - | chr3_2:54040563-54040582 | None:intergenic | 45.0% |
| CCAGGTTACAACAACAAACG+AGG | + | chr3_2:54040560-54040579 | Msa0411650:CDS | 45.0% | |
| TAGTTGAGATCAACTGGAGC+TGG | - | chr3_2:54040752-54040771 | None:intergenic | 45.0% | |
| !! | AGTGTTGCTTGTTCTGCTGA+CGG | + | chr3_2:54040935-54040954 | Msa0411650:CDS | 45.0% |
| GACACAAGACACTCGAAGAT+TGG | + | chr3_2:54040979-54040998 | Msa0411650:CDS | 45.0% | |
| TCGAAGATTGGTACCACCAA+TGG | + | chr3_2:54040991-54041010 | Msa0411650:CDS | 45.0% | |
| GATTGCAATGACTCCATTGG+TGG | - | chr3_2:54041007-54041026 | None:intergenic | 45.0% | |
| CATTGCAATCTCTGCAATCG+TGG | + | chr3_2:54041017-54041036 | Msa0411650:CDS | 45.0% | |
| CAATCGTGGCCAGAAATACA+TGG | + | chr3_2:54041031-54041050 | Msa0411650:CDS | 45.0% | |
| GACACAAGACACTCGAAGAA+TGG | + | chr3_2:54041099-54041118 | Msa0411650:CDS | 45.0% | |
| TCGAAGAATGGTACCACCAA+TGG | + | chr3_2:54041111-54041130 | Msa0411650:CDS | 45.0% | |
| GATTGCAATGACTCCATTGG+TGG | - | chr3_2:54041007-54041026 | None:intergenic | 45.0% | |
| !! | AGTGTTGCTTGTTCTGCTGA+CGG | + | chr3_2:54040935-54040954 | Msa0411650:CDS | 45.0% |
| GACACAAGACACTCGAAGAT+TGG | + | chr3_2:54040979-54040998 | Msa0411650:CDS | 45.0% | |
| ! | TCGAAGATTGGTAGCACCAA+TGG | + | chr3_2:54041231-54041250 | Msa0411650:CDS | 45.0% |
| TTCCTAGCACCAAGTGACAT+AGG | - | chr3_2:54041349-54041368 | None:intergenic | 45.0% | |
| !! | ATGTCACTTGGTGCTAGGAA+TGG | + | chr3_2:54041349-54041368 | Msa0411650:CDS | 45.0% |
| TTGGAAATAGCTTGGCCTCT+GGG | - | chr3_2:54041440-54041459 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTATTTATTCATAA+AGG | + | chr3_2:54039056-54039075 | Msa0411650:intron | 5.0% |
| GAGAGAGAGAGAGAGACCAT+AGG | - | chr3_2:54038850-54038869 | None:intergenic | 50.0% | |
| GAAGAAAGTTGCTGCCACCA+TGG | + | chr3_2:54039336-54039355 | Msa0411650:intron | 50.0% | |
| !! | GGAGTGCTTGTTGTGATGCA+TGG | + | chr3_2:54039568-54039587 | Msa0411650:intron | 50.0% |
| CCCTCCTGTTCATGTAGATG+AGG | + | chr3_2:54039868-54039887 | Msa0411650:intron | 50.0% | |
| ! | CTGGGAGCATACGTGTTACA+TGG | + | chr3_2:54039941-54039960 | Msa0411650:CDS | 50.0% |
| TCCCGTTGTCTTCCTTCCTA+TGG | - | chr3_2:54040054-54040073 | None:intergenic | 50.0% | |
| TGTGATGACCCCTTTCCTCT+CGG | + | chr3_2:54040596-54040615 | Msa0411650:CDS | 50.0% | |
| TGCACTTACCGAGAGGAAAG+GGG | - | chr3_2:54040607-54040626 | None:intergenic | 50.0% | |
| CTGCACTTACCGAGAGGAAA+GGG | - | chr3_2:54040608-54040627 | None:intergenic | 50.0% | |
| !! | AAAGTGCTGCACTTACCGAG+AGG | - | chr3_2:54040614-54040633 | None:intergenic | 50.0% |
| GTGTCATATCACGAGCACAG+CGG | - | chr3_2:54040964-54040983 | None:intergenic | 50.0% | |
| GTGTCATATCACGAGCACAG+CGG | - | chr3_2:54040964-54040983 | None:intergenic | 50.0% | |
| CATTGCAATCTCTGCAACCG+TGG | + | chr3_2:54041137-54041156 | Msa0411650:CDS | 50.0% | |
| GTGTCATATCACGAGCACAG+CGG | - | chr3_2:54040964-54040983 | None:intergenic | 50.0% | |
| CATTGCAATCTCTGCAGTCG+TGG | + | chr3_2:54041257-54041276 | Msa0411650:CDS | 50.0% | |
| ATGGCTCCTCCTATGTCACT+TGG | + | chr3_2:54041337-54041356 | Msa0411650:CDS | 50.0% | |
| CTAGCACCAAGTGACATAGG+AGG | - | chr3_2:54041346-54041365 | None:intergenic | 50.0% | |
| !! | CTCCTATGTCACTTGGTGCT+AGG | + | chr3_2:54041344-54041363 | Msa0411650:CDS | 50.0% |
| CTTGGAAATAGCTTGGCCTC+TGG | - | chr3_2:54041441-54041460 | None:intergenic | 50.0% | |
| ! | GGTACAATGCTGAAGTGCCT+AGG | + | chr3_2:54041527-54041546 | Msa0411650:CDS | 50.0% |
| GCTGCACTTACCGAGAGGAA+AGG | - | chr3_2:54040609-54040628 | None:intergenic | 55.0% | |
| ! | GGCATCGGAGCATTTCTGCA+AGG | - | chr3_2:54041469-54041488 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 54038568 | 54041585 | 54038568 | ID=Msa0411650;Name=Msa0411650 |
| chr3_2 | mRNA | 54038568 | 54041585 | 54038568 | ID=Msa0411650-mRNA-1;Parent=Msa0411650;Name=Msa0411650-mRNA-1;_AED=0.09;_eAED=0.11;_QI=26|1|0.66|1|1|1|3|0|554 |
| chr3_2 | exon | 54038568 | 54038852 | 54038568 | ID=Msa0411650-mRNA-1:exon:10908;Parent=Msa0411650-mRNA-1 |
| chr3_2 | exon | 54039885 | 54040083 | 54039885 | ID=Msa0411650-mRNA-1:exon:10909;Parent=Msa0411650-mRNA-1 |
| chr3_2 | exon | 54040379 | 54041585 | 54040379 | ID=Msa0411650-mRNA-1:exon:10910;Parent=Msa0411650-mRNA-1 |
| chr3_2 | five_prime_UTR | 54038568 | 54038593 | 54038568 | ID=Msa0411650-mRNA-1:five_prime_utr;Parent=Msa0411650-mRNA-1 |
| chr3_2 | CDS | 54038594 | 54038852 | 54038594 | ID=Msa0411650-mRNA-1:cds;Parent=Msa0411650-mRNA-1 |
| chr3_2 | CDS | 54039885 | 54040083 | 54039885 | ID=Msa0411650-mRNA-1:cds;Parent=Msa0411650-mRNA-1 |
| chr3_2 | CDS | 54040379 | 54041585 | 54040379 | ID=Msa0411650-mRNA-1:cds;Parent=Msa0411650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
