AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0413300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0413300 MtrunA17_Chr3g0105631 97.680 388 9 0 1 388 1 388 0.0 792
Msa0413300 MtrunA17_Chr5g0401351 48.622 399 181 7 8 388 11 403 6.29e-123 361
Msa0413300 MtrunA17_Chr4g0053961 48.744 398 173 7 17 387 17 410 1.15e-120 355
Msa0413300 MtrunA17_Chr4g0001411 46.231 398 182 13 8 387 25 408 1.79e-103 311
Msa0413300 MtrunA17_Chr4g0068331 38.386 409 216 16 4 387 9 406 3.19e-75 239
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0413300 AT2G30090.1 53.230 387 160 7 8 388 15 386 5.21e-135 391
Msa0413300 AT2G23060.1 47.330 412 179 8 8 387 7 412 5.68e-123 362
Msa0413300 AT4G37580.1 47.525 404 183 7 8 387 4 402 1.32e-120 355
Msa0413300 AT5G67430.1 44.862 399 190 9 3 388 5 386 1.25e-113 337
Msa0413300 AT4G37580.2 46.221 344 160 5 65 387 6 345 1.38e-96 292
Msa0413300 AT5G67430.2 43.976 332 162 7 70 388 1 321 7.55e-92 279
Msa0413300 AT2G23060.2 46.809 282 136 4 116 387 1 278 6.68e-84 257

Find 81 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGATTTCTTTAACCCTTT+TGG 0.154907 3_2:-57695927 Msa0413300:CDS
TTTAAAGATGATATTAATAT+TGG 0.198020 3_2:-57696113 Msa0413300:CDS
ATTAAGGAATAAATTAAGTT+TGG 0.224040 3_2:-57696153 Msa0413300:CDS
AGCTCTTGTAGGTGGGATTT+TGG 0.230695 3_2:+57695647 None:intergenic
TTCACTAGCTTCCCTGAAAA+TGG 0.245411 3_2:+57695870 None:intergenic
AATATATTTCCTATATCATT+AGG 0.292377 3_2:+57696173 None:intergenic
GTGTATAACAAACAACAAAA+AGG 0.302675 3_2:+57696005 None:intergenic
CTATTTGGTACTTGTCCATT+AGG 0.309103 3_2:+57696089 None:intergenic
CTAAGCATAGCCCAACTATT+TGG 0.312703 3_2:+57696074 None:intergenic
TTAAGGAATAAATTAAGTTT+GGG 0.313536 3_2:-57696152 Msa0413300:CDS
ATGATATAGGAAATATATTA+AGG 0.325837 3_2:-57696169 Msa0413300:CDS
TTTATGCACCACAAATCTTC+AGG 0.326456 3_2:+57695717 None:intergenic
AGGACATCCACCAAAGGATT+TGG 0.330187 3_2:-57696522 Msa0413300:CDS
ATCATAATTTAAACCTCTCT+TGG 0.343464 3_2:+57695612 None:intergenic
ATGTCAATTTGTGCACAATA+TGG 0.349042 3_2:-57695841 Msa0413300:CDS
GATATTAATATTGGGCCTAA+TGG 0.352217 3_2:-57696104 Msa0413300:CDS
AGTTTAACTACACAAAGTTT+AGG 0.361536 3_2:-57696328 Msa0413300:CDS
ATAAAAGTTGTAACTGTTCA+AGG 0.367914 3_2:-57696542 Msa0413300:CDS
TTAAAGATGATATTAATATT+GGG 0.372605 3_2:-57696112 Msa0413300:CDS
GTTTCTCTTCACAGACACTA+TGG 0.386937 3_2:-57697157 Msa0413300:CDS
TAGGGTATGCCCTAGGCTTA+AGG 0.390017 3_2:-57696493 Msa0413300:CDS
TCTCCACATCATAGAAGAAA+AGG 0.405669 3_2:-57696467 Msa0413300:CDS
CCAAAAGGGTTAAAGAAATC+AGG 0.405999 3_2:+57695927 None:intergenic
ATCACTCTATAGAAGATTCA+TGG 0.406094 3_2:-57696213 Msa0413300:CDS
GAGATATTCAAGTTAAAGAT+AGG 0.413312 3_2:-57696035 Msa0413300:CDS
TCTCATGCCCTGAAGATTTG+TGG 0.422983 3_2:-57695725 Msa0413300:CDS
TACATAAAATAAAATCCAAA+AGG 0.427077 3_2:+57695912 None:intergenic
ATTCTTCTAATGTTCTTACT+AGG 0.427168 3_2:+57696432 None:intergenic
TGAAGATTTGTGGTGCATAA+AGG 0.428454 3_2:-57695715 Msa0413300:CDS
ATGGACAAGTACCAAATAGT+TGG 0.433424 3_2:-57696085 Msa0413300:CDS
CTATGGGTGACCCCATTTGT+AGG 0.434012 3_2:-57697140 Msa0413300:CDS
ATAAATTAAGTTTGGGGACA+TGG 0.434467 3_2:-57696145 Msa0413300:CDS
AGCAGAGTTGGACAATGAAT+TGG 0.436658 3_2:-57696585 Msa0413300:CDS
TCATAATTTAAACCTCTCTT+GGG 0.443562 3_2:+57695613 None:intergenic
GAATTGGTTGGTGTCATTCA+AGG 0.455654 3_2:-57696569 Msa0413300:CDS
ACTGTTTCGAATCCTACAAA+TGG 0.464122 3_2:+57697128 None:intergenic
TTTAATGAGTGATGGTTCAC+AGG 0.470283 3_2:+57696284 None:intergenic
AGGGTATGCCCTAGGCTTAA+GGG 0.471150 3_2:-57696492 Msa0413300:CDS
CTGTTTCGAATCCTACAAAT+GGG 0.471230 3_2:+57697129 None:intergenic
GTTGGGCTATGCTTAGTGTA+TGG 0.480182 3_2:-57696067 Msa0413300:CDS
CAAACAACATTGAAATATCA+AGG 0.489226 3_2:-57696256 Msa0413300:CDS
TGGACAAGTACCAAATAGTT+GGG 0.499070 3_2:-57696084 Msa0413300:CDS
TTAAAGAAATCAGGTAAAGT+AGG 0.499517 3_2:+57695936 None:intergenic
ACGATTATTGTGACTGAAGT+TGG 0.507068 3_2:-57695792 Msa0413300:CDS
TAGTAAGAACATTAGAAGAA+TGG 0.512758 3_2:-57696430 Msa0413300:CDS
CCAAAGGATTTGGCAAAAGT+AGG 0.514069 3_2:-57696512 Msa0413300:CDS
ACAGGGTTAACAAGAATAGA+TGG 0.514152 3_2:+57696302 None:intergenic
TTATGCACCACAAATCTTCA+GGG 0.517119 3_2:+57695718 None:intergenic
ATGGTTCATTTCTAATGATG+TGG 0.522995 3_2:-57696411 Msa0413300:CDS
ATATACCAGCATCATGTACA+TGG 0.524771 3_2:+57697104 None:intergenic
TCACTCTATAGAAGATTCAT+GGG 0.529453 3_2:-57696212 Msa0413300:CDS
CAAAGGATTTGGCAAAAGTA+GGG 0.531057 3_2:-57696511 Msa0413300:CDS
ACATAAAATAAAATCCAAAA+GGG 0.537102 3_2:+57695913 None:intergenic
CTCCACATCATAGAAGAAAA+GGG 0.538419 3_2:-57696466 Msa0413300:CDS
ATGTATGGTGTGTATCATGA+AGG 0.541875 3_2:-57695894 Msa0413300:CDS
TTTCTCTTCACAGACACTAT+GGG 0.544269 3_2:-57697156 Msa0413300:CDS
GTGGAGATACCCTTAAGCCT+AGG 0.544733 3_2:+57696483 None:intergenic
ATGCTTAGTGTATGGAATAG+TGG 0.546161 3_2:-57696059 Msa0413300:CDS
ATTAAGTTTGGGGACATGGA+TGG 0.547711 3_2:-57696141 Msa0413300:CDS
CATCATAGAAGAAAAGGGAT+TGG 0.551271 3_2:-57696461 Msa0413300:CDS
TGGATGTTAGGTAGCAGAGT+TGG 0.556839 3_2:-57696597 Msa0413300:intron
TAAGGAATAAATTAAGTTTG+GGG 0.567784 3_2:-57696151 Msa0413300:CDS
CAGTCCCATGTACATGATGC+TGG 0.573817 3_2:-57697109 Msa0413300:intron
TTAGAGAGAAAATGTGAGGT+AGG 0.580395 3_2:-57697195 Msa0413300:CDS
TGGAGATACCCTTAAGCCTA+GGG 0.588065 3_2:+57696484 None:intergenic
TGATGTGGACTATGCATACA+TGG 0.598697 3_2:-57696396 Msa0413300:CDS
GCAAAAGTAGGGTATGCCCT+AGG 0.599208 3_2:-57696500 Msa0413300:CDS
ATTATTGTGACTGAAGTTGG+AGG 0.599633 3_2:-57695789 Msa0413300:CDS
TTAATGAGTGATGGTTCACA+GGG 0.619510 3_2:+57696285 None:intergenic
AAGAGAAACACACTTTCTGA+TGG 0.631909 3_2:+57697171 None:intergenic
TCAATCATCACATTCCACAT+TGG 0.637209 3_2:-57695755 Msa0413300:CDS
AAATTTAGAGAGAAAATGTG+AGG 0.640564 3_2:-57697199 Msa0413300:CDS
TTTAGAATCAGAAGCTACGA+GGG 0.648482 3_2:-57697249 Msa0413300:CDS
CATGAGAGCAACTTCCAATG+TGG 0.679406 3_2:+57695741 None:intergenic
TATACCAGCATCATGTACAT+GGG 0.680033 3_2:+57697105 None:intergenic
TGTATGGTGTGTATCATGAA+GGG 0.680044 3_2:-57695893 Msa0413300:CDS
GTTTAGAATCAGAAGCTACG+AGG 0.683015 3_2:-57697250 Msa0413300:CDS
TGTTCAAGGACATCCACCAA+AGG 0.683056 3_2:-57696528 Msa0413300:CDS
GAGTTGGACAATGAATTGGT+TGG 0.721734 3_2:-57696581 Msa0413300:CDS
CACTCTATAGAAGATTCATG+GGG 0.722156 3_2:-57696211 Msa0413300:CDS
TGTTTCGAATCCTACAAATG+GGG 0.724283 3_2:+57697130 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAGATGATATTAATAT+TGG - chr3_2:57696771-57696790 Msa0413300:intron 10.0%
!! TTAAAGATGATATTAATATT+GGG - chr3_2:57696772-57696791 Msa0413300:intron 10.0%
!! TTTAAAGATGATATTAATAT+TGG - chr3_2:57696771-57696790 Msa0413300:intron 10.0%
!! TTAAAGATGATATTAATATT+GGG - chr3_2:57696772-57696791 Msa0413300:intron 10.0%
!! AAAAGAGAAAAGAAAAAAAA+GGG + chr3_2:57695859-57695878 None:intergenic 15.0%
!! AAAATCTTCAATATATATTG+CGG + chr3_2:57696085-57696104 None:intergenic 15.0%
!! AATATATTTCCTATATCATT+AGG + chr3_2:57696714-57696733 None:intergenic 15.0%
!! ATGATATAGGAAATATATTA+AGG - chr3_2:57696715-57696734 Msa0413300:intron 15.0%
!! ATTAAGGAATAAATTAAGTT+TGG - chr3_2:57696731-57696750 Msa0413300:intron 15.0%
!! TTAAGGAATAAATTAAGTTT+GGG - chr3_2:57696732-57696751 Msa0413300:intron 15.0%
!! ACATAAAATAAAATCCAAAA+GGG + chr3_2:57696974-57696993 None:intergenic 15.0%
!! TACATAAAATAAAATCCAAA+AGG + chr3_2:57696975-57696994 None:intergenic 15.0%
!!! TTTGGATTTTATTTTATGTA+TGG - chr3_2:57696975-57696994 Msa0413300:intron 15.0%
!! AAAAGAGAAAAGAAAAAAAA+GGG + chr3_2:57695859-57695878 None:intergenic 15.0%
!! AAAATCTTCAATATATATTG+CGG + chr3_2:57696085-57696104 None:intergenic 15.0%
!! AATATATTTCCTATATCATT+AGG + chr3_2:57696714-57696733 None:intergenic 15.0%
!! ATGATATAGGAAATATATTA+AGG - chr3_2:57696715-57696734 Msa0413300:intron 15.0%
!! ATTAAGGAATAAATTAAGTT+TGG - chr3_2:57696731-57696750 Msa0413300:intron 15.0%
!! TTAAGGAATAAATTAAGTTT+GGG - chr3_2:57696732-57696751 Msa0413300:intron 15.0%
!! ACATAAAATAAAATCCAAAA+GGG + chr3_2:57696974-57696993 None:intergenic 15.0%
!! TACATAAAATAAAATCCAAA+AGG + chr3_2:57696975-57696994 None:intergenic 15.0%
!!! TTTGGATTTTATTTTATGTA+TGG - chr3_2:57696975-57696994 Msa0413300:intron 15.0%
!! GAAAAGAGAAAAGAAAAAAA+AGG + chr3_2:57695860-57695879 None:intergenic 20.0%
!!! TCAAGTACAATTTTAAATTG+TGG - chr3_2:57695918-57695937 Msa0413300:CDS 20.0%
!!! TGCATTTTACTATAATAGAA+AGG - chr3_2:57696140-57696159 Msa0413300:CDS 20.0%
!! TAAGGAATAAATTAAGTTTG+GGG - chr3_2:57696733-57696752 Msa0413300:intron 20.0%
!! GAAAAGAGAAAAGAAAAAAA+AGG + chr3_2:57695860-57695879 None:intergenic 20.0%
!!! TCAAGTACAATTTTAAATTG+TGG - chr3_2:57695918-57695937 Msa0413300:CDS 20.0%
!!! TGCATTTTACTATAATAGAA+AGG - chr3_2:57696140-57696159 Msa0413300:CDS 20.0%
!! TAAGGAATAAATTAAGTTTG+GGG - chr3_2:57696733-57696752 Msa0413300:intron 20.0%
! AAATTTAGAGAGAAAATGTG+AGG - chr3_2:57695685-57695704 Msa0413300:CDS 25.0%
!! TCTTTTCTCTTTTCCTTTTA+TGG - chr3_2:57695866-57695885 Msa0413300:CDS 25.0%
!! AAGAACAAGGAGTATAAAAT+GGG + chr3_2:57695898-57695917 None:intergenic 25.0%
!! AAAGAACAAGGAGTATAAAA+TGG + chr3_2:57695899-57695918 None:intergenic 25.0%
! AAATTGTACTTGAAAGAACA+AGG + chr3_2:57695911-57695930 None:intergenic 25.0%
!! ACAATTTTAAATTGTGGTTG+CGG - chr3_2:57695924-57695943 Msa0413300:CDS 25.0%
!!! TACATTTTGATGCAATATGA+AGG + chr3_2:57695962-57695981 None:intergenic 25.0%
!!! GAAAACATGGTTTTAAATTG+TGG + chr3_2:57696228-57696247 None:intergenic 25.0%
! TAACTTCTTAATTGGATGTT+AGG - chr3_2:57696275-57696294 Msa0413300:CDS 25.0%
! ATAAAAGTTGTAACTGTTCA+AGG - chr3_2:57696342-57696361 Msa0413300:CDS 25.0%
! ATTCTTCTAATGTTCTTACT+AGG + chr3_2:57696455-57696474 None:intergenic 25.0%
! TAGTAAGAACATTAGAAGAA+TGG - chr3_2:57696454-57696473 Msa0413300:CDS 25.0%
! AGTTTAACTACACAAAGTTT+AGG - chr3_2:57696556-57696575 Msa0413300:CDS 25.0%
!! TTGAGATTTTTAATGAGTGA+TGG + chr3_2:57696611-57696630 None:intergenic 25.0%
! CAAACAACATTGAAATATCA+AGG - chr3_2:57696628-57696647 Msa0413300:intron 25.0%
!!! GAGTTTTTTCCTAATGATAT+AGG - chr3_2:57696702-57696721 Msa0413300:intron 25.0%
!! GAGATATTCAAGTTAAAGAT+AGG - chr3_2:57696849-57696868 Msa0413300:intron 25.0%
! GTGTATAACAAACAACAAAA+AGG + chr3_2:57696882-57696901 None:intergenic 25.0%
!!! GTTTGTTATACACAAAAAGT+TGG - chr3_2:57696889-57696908 Msa0413300:intron 25.0%
!! AAGTAGGCAATTTTAAACAT+GGG + chr3_2:57696935-57696954 None:intergenic 25.0%
!! AAAGTAGGCAATTTTAAACA+TGG + chr3_2:57696936-57696955 None:intergenic 25.0%
! TTAAAGAAATCAGGTAAAGT+AGG + chr3_2:57696951-57696970 None:intergenic 25.0%
! AAATTTAGAGAGAAAATGTG+AGG - chr3_2:57695685-57695704 Msa0413300:CDS 25.0%
!! TCTTTTCTCTTTTCCTTTTA+TGG - chr3_2:57695866-57695885 Msa0413300:CDS 25.0%
!! AAGAACAAGGAGTATAAAAT+GGG + chr3_2:57695898-57695917 None:intergenic 25.0%
!! AAAGAACAAGGAGTATAAAA+TGG + chr3_2:57695899-57695918 None:intergenic 25.0%
! AAATTGTACTTGAAAGAACA+AGG + chr3_2:57695911-57695930 None:intergenic 25.0%
!! ACAATTTTAAATTGTGGTTG+CGG - chr3_2:57695924-57695943 Msa0413300:CDS 25.0%
!!! TACATTTTGATGCAATATGA+AGG + chr3_2:57695962-57695981 None:intergenic 25.0%
!!! GAAAACATGGTTTTAAATTG+TGG + chr3_2:57696228-57696247 None:intergenic 25.0%
! TAACTTCTTAATTGGATGTT+AGG - chr3_2:57696275-57696294 Msa0413300:CDS 25.0%
! ATAAAAGTTGTAACTGTTCA+AGG - chr3_2:57696342-57696361 Msa0413300:CDS 25.0%
! ATTCTTCTAATGTTCTTACT+AGG + chr3_2:57696455-57696474 None:intergenic 25.0%
! TAGTAAGAACATTAGAAGAA+TGG - chr3_2:57696454-57696473 Msa0413300:CDS 25.0%
! AGTTTAACTACACAAAGTTT+AGG - chr3_2:57696556-57696575 Msa0413300:CDS 25.0%
!! TTGAGATTTTTAATGAGTGA+TGG + chr3_2:57696611-57696630 None:intergenic 25.0%
! CAAACAACATTGAAATATCA+AGG - chr3_2:57696628-57696647 Msa0413300:intron 25.0%
!!! GAGTTTTTTCCTAATGATAT+AGG - chr3_2:57696702-57696721 Msa0413300:intron 25.0%
!! GAGATATTCAAGTTAAAGAT+AGG - chr3_2:57696849-57696868 Msa0413300:intron 25.0%
! GTGTATAACAAACAACAAAA+AGG + chr3_2:57696882-57696901 None:intergenic 25.0%
!!! GTTTGTTATACACAAAAAGT+TGG - chr3_2:57696889-57696908 Msa0413300:intron 25.0%
!! AAGTAGGCAATTTTAAACAT+GGG + chr3_2:57696935-57696954 None:intergenic 25.0%
!! AAAGTAGGCAATTTTAAACA+TGG + chr3_2:57696936-57696955 None:intergenic 25.0%
! TTAAAGAAATCAGGTAAAGT+AGG + chr3_2:57696951-57696970 None:intergenic 25.0%
AAATGGGATTGATCCATAAA+AGG + chr3_2:57695882-57695901 None:intergenic 30.0%
TCTCATAACCCTTTATATTG+CGG - chr3_2:57696018-57696037 Msa0413300:CDS 30.0%
! ACTGAAGTTTAAAACCATTG+TGG + chr3_2:57696044-57696063 None:intergenic 30.0%
GATCAAAGAACTAGAAAACA+TGG + chr3_2:57696241-57696260 None:intergenic 30.0%
ACATCCAATTAAGAAGTTAG+TGG + chr3_2:57696274-57696293 None:intergenic 30.0%
ATGGTTCATTTCTAATGATG+TGG - chr3_2:57696473-57696492 Msa0413300:CDS 30.0%
ATCACTCTATAGAAGATTCA+TGG - chr3_2:57696671-57696690 Msa0413300:intron 30.0%
TCACTCTATAGAAGATTCAT+GGG - chr3_2:57696672-57696691 Msa0413300:intron 30.0%
ATCATTAGGAAAAAACTCTG+TGG + chr3_2:57696700-57696719 None:intergenic 30.0%
ATAAATTAAGTTTGGGGACA+TGG - chr3_2:57696739-57696758 Msa0413300:intron 30.0%
GATATTAATATTGGGCCTAA+TGG - chr3_2:57696780-57696799 Msa0413300:intron 30.0%
ATGTCAATTTGTGCACAATA+TGG - chr3_2:57697043-57697062 Msa0413300:intron 30.0%
!! ATAAAGGCACTGAAAAATGA+AGG - chr3_2:57697185-57697204 Msa0413300:CDS 30.0%
AAATGGGATTGATCCATAAA+AGG + chr3_2:57695882-57695901 None:intergenic 30.0%
TCTCATAACCCTTTATATTG+CGG - chr3_2:57696018-57696037 Msa0413300:CDS 30.0%
! ACTGAAGTTTAAAACCATTG+TGG + chr3_2:57696044-57696063 None:intergenic 30.0%
GATCAAAGAACTAGAAAACA+TGG + chr3_2:57696241-57696260 None:intergenic 30.0%
ACATCCAATTAAGAAGTTAG+TGG + chr3_2:57696274-57696293 None:intergenic 30.0%
ATGGTTCATTTCTAATGATG+TGG - chr3_2:57696473-57696492 Msa0413300:CDS 30.0%
ATCACTCTATAGAAGATTCA+TGG - chr3_2:57696671-57696690 Msa0413300:intron 30.0%
TCACTCTATAGAAGATTCAT+GGG - chr3_2:57696672-57696691 Msa0413300:intron 30.0%
ATCATTAGGAAAAAACTCTG+TGG + chr3_2:57696700-57696719 None:intergenic 30.0%
ATAAATTAAGTTTGGGGACA+TGG - chr3_2:57696739-57696758 Msa0413300:intron 30.0%
GATATTAATATTGGGCCTAA+TGG - chr3_2:57696780-57696799 Msa0413300:intron 30.0%
ATGTCAATTTGTGCACAATA+TGG - chr3_2:57697043-57697062 Msa0413300:intron 30.0%
!! ATAAAGGCACTGAAAAATGA+AGG - chr3_2:57697185-57697204 Msa0413300:CDS 30.0%
! TTTAGAATCAGAAGCTACGA+GGG - chr3_2:57695635-57695654 Msa0413300:CDS 35.0%
TTAGAGAGAAAATGTGAGGT+AGG - chr3_2:57695689-57695708 Msa0413300:CDS 35.0%
AAGAGAAACACACTTTCTGA+TGG + chr3_2:57695716-57695735 None:intergenic 35.0%
TTTCTCTTCACAGACACTAT+GGG - chr3_2:57695728-57695747 Msa0413300:CDS 35.0%
TGTTTCGAATCCTACAAATG+GGG + chr3_2:57695757-57695776 None:intergenic 35.0%
CTGTTTCGAATCCTACAAAT+GGG + chr3_2:57695758-57695777 None:intergenic 35.0%
ACTGTTTCGAATCCTACAAA+TGG + chr3_2:57695759-57695778 None:intergenic 35.0%
TATACCAGCATCATGTACAT+GGG + chr3_2:57695782-57695801 None:intergenic 35.0%
ATATACCAGCATCATGTACA+TGG + chr3_2:57695783-57695802 None:intergenic 35.0%
TCAGTTTACAACTGCAAATG+TGG - chr3_2:57696059-57696078 Msa0413300:CDS 35.0%
!!! GCACTTACGGTTTTAAATTG+CGG + chr3_2:57696184-57696203 None:intergenic 35.0%
TCCACCACTAACTTCTTAAT+TGG - chr3_2:57696267-57696286 Msa0413300:CDS 35.0%
TCCAATTAAGAAGTTAGTGG+TGG + chr3_2:57696271-57696290 None:intergenic 35.0%
CAAAGGATTTGGCAAAAGTA+GGG - chr3_2:57696373-57696392 Msa0413300:CDS 35.0%
TCTCCACATCATAGAAGAAA+AGG - chr3_2:57696417-57696436 Msa0413300:CDS 35.0%
CTCCACATCATAGAAGAAAA+GGG - chr3_2:57696418-57696437 Msa0413300:CDS 35.0%
! ATCCCTTTTCTTCTATGATG+TGG + chr3_2:57696423-57696442 None:intergenic 35.0%
CATCATAGAAGAAAAGGGAT+TGG - chr3_2:57696423-57696442 Msa0413300:CDS 35.0%
ACAGGGTTAACAAGAATAGA+TGG + chr3_2:57696585-57696604 None:intergenic 35.0%
TTAATGAGTGATGGTTCACA+GGG + chr3_2:57696602-57696621 None:intergenic 35.0%
TTTAATGAGTGATGGTTCAC+AGG + chr3_2:57696603-57696622 None:intergenic 35.0%
CACTCTATAGAAGATTCATG+GGG - chr3_2:57696673-57696692 Msa0413300:intron 35.0%
CTATTTGGTACTTGTCCATT+AGG + chr3_2:57696798-57696817 None:intergenic 35.0%
ATGGACAAGTACCAAATAGT+TGG - chr3_2:57696799-57696818 Msa0413300:intron 35.0%
TGGACAAGTACCAAATAGTT+GGG - chr3_2:57696800-57696819 Msa0413300:intron 35.0%
ATGCTTAGTGTATGGAATAG+TGG - chr3_2:57696825-57696844 Msa0413300:intron 35.0%
CCAAAAGGGTTAAAGAAATC+AGG + chr3_2:57696960-57696979 None:intergenic 35.0%
! CCTGATTTCTTTAACCCTTT+TGG - chr3_2:57696957-57696976 Msa0413300:intron 35.0%
ATGTATGGTGTGTATCATGA+AGG - chr3_2:57696990-57697009 Msa0413300:intron 35.0%
TGTATGGTGTGTATCATGAA+GGG - chr3_2:57696991-57697010 Msa0413300:intron 35.0%
ACGATTATTGTGACTGAAGT+TGG - chr3_2:57697092-57697111 Msa0413300:intron 35.0%
ATTATTGTGACTGAAGTTGG+AGG - chr3_2:57697095-57697114 Msa0413300:intron 35.0%
TCAATCATCACATTCCACAT+TGG - chr3_2:57697129-57697148 Msa0413300:CDS 35.0%
TTATGCACCACAAATCTTCA+GGG + chr3_2:57697169-57697188 None:intergenic 35.0%
TTTATGCACCACAAATCTTC+AGG + chr3_2:57697170-57697189 None:intergenic 35.0%
TGAAGATTTGTGGTGCATAA+AGG - chr3_2:57697169-57697188 Msa0413300:CDS 35.0%
TCTACAAAAAGAGCTCTTGT+AGG + chr3_2:57697251-57697270 None:intergenic 35.0%
! TTTAGAATCAGAAGCTACGA+GGG - chr3_2:57695635-57695654 Msa0413300:CDS 35.0%
TTAGAGAGAAAATGTGAGGT+AGG - chr3_2:57695689-57695708 Msa0413300:CDS 35.0%
AAGAGAAACACACTTTCTGA+TGG + chr3_2:57695716-57695735 None:intergenic 35.0%
TTTCTCTTCACAGACACTAT+GGG - chr3_2:57695728-57695747 Msa0413300:CDS 35.0%
TGTTTCGAATCCTACAAATG+GGG + chr3_2:57695757-57695776 None:intergenic 35.0%
CTGTTTCGAATCCTACAAAT+GGG + chr3_2:57695758-57695777 None:intergenic 35.0%
ACTGTTTCGAATCCTACAAA+TGG + chr3_2:57695759-57695778 None:intergenic 35.0%
TATACCAGCATCATGTACAT+GGG + chr3_2:57695782-57695801 None:intergenic 35.0%
ATATACCAGCATCATGTACA+TGG + chr3_2:57695783-57695802 None:intergenic 35.0%
TCAGTTTACAACTGCAAATG+TGG - chr3_2:57696059-57696078 Msa0413300:CDS 35.0%
!!! GCACTTACGGTTTTAAATTG+CGG + chr3_2:57696184-57696203 None:intergenic 35.0%
TCCACCACTAACTTCTTAAT+TGG - chr3_2:57696267-57696286 Msa0413300:CDS 35.0%
TCCAATTAAGAAGTTAGTGG+TGG + chr3_2:57696271-57696290 None:intergenic 35.0%
CAAAGGATTTGGCAAAAGTA+GGG - chr3_2:57696373-57696392 Msa0413300:CDS 35.0%
TCTCCACATCATAGAAGAAA+AGG - chr3_2:57696417-57696436 Msa0413300:CDS 35.0%
CTCCACATCATAGAAGAAAA+GGG - chr3_2:57696418-57696437 Msa0413300:CDS 35.0%
! ATCCCTTTTCTTCTATGATG+TGG + chr3_2:57696423-57696442 None:intergenic 35.0%
CATCATAGAAGAAAAGGGAT+TGG - chr3_2:57696423-57696442 Msa0413300:CDS 35.0%
ACAGGGTTAACAAGAATAGA+TGG + chr3_2:57696585-57696604 None:intergenic 35.0%
TTAATGAGTGATGGTTCACA+GGG + chr3_2:57696602-57696621 None:intergenic 35.0%
TTTAATGAGTGATGGTTCAC+AGG + chr3_2:57696603-57696622 None:intergenic 35.0%
CACTCTATAGAAGATTCATG+GGG - chr3_2:57696673-57696692 Msa0413300:intron 35.0%
CTATTTGGTACTTGTCCATT+AGG + chr3_2:57696798-57696817 None:intergenic 35.0%
ATGGACAAGTACCAAATAGT+TGG - chr3_2:57696799-57696818 Msa0413300:intron 35.0%
TGGACAAGTACCAAATAGTT+GGG - chr3_2:57696800-57696819 Msa0413300:intron 35.0%
ATGCTTAGTGTATGGAATAG+TGG - chr3_2:57696825-57696844 Msa0413300:intron 35.0%
CCAAAAGGGTTAAAGAAATC+AGG + chr3_2:57696960-57696979 None:intergenic 35.0%
! CCTGATTTCTTTAACCCTTT+TGG - chr3_2:57696957-57696976 Msa0413300:intron 35.0%
ATGTATGGTGTGTATCATGA+AGG - chr3_2:57696990-57697009 Msa0413300:intron 35.0%
TGTATGGTGTGTATCATGAA+GGG - chr3_2:57696991-57697010 Msa0413300:intron 35.0%
ACGATTATTGTGACTGAAGT+TGG - chr3_2:57697092-57697111 Msa0413300:intron 35.0%
ATTATTGTGACTGAAGTTGG+AGG - chr3_2:57697095-57697114 Msa0413300:intron 35.0%
TCAATCATCACATTCCACAT+TGG - chr3_2:57697129-57697148 Msa0413300:CDS 35.0%
TTATGCACCACAAATCTTCA+GGG + chr3_2:57697169-57697188 None:intergenic 35.0%
TTTATGCACCACAAATCTTC+AGG + chr3_2:57697170-57697189 None:intergenic 35.0%
TGAAGATTTGTGGTGCATAA+AGG - chr3_2:57697169-57697188 Msa0413300:CDS 35.0%
TCTACAAAAAGAGCTCTTGT+AGG + chr3_2:57697251-57697270 None:intergenic 35.0%
! GTTTAGAATCAGAAGCTACG+AGG - chr3_2:57695634-57695653 Msa0413300:CDS 40.0%
GTTTCTCTTCACAGACACTA+TGG - chr3_2:57695727-57695746 Msa0413300:CDS 40.0%
CATTGTGGCCGCAATATAAA+GGG + chr3_2:57696029-57696048 None:intergenic 40.0%
AGCAGAGTTGGACAATGAAT+TGG - chr3_2:57696299-57696318 Msa0413300:CDS 40.0%
GAGTTGGACAATGAATTGGT+TGG - chr3_2:57696303-57696322 Msa0413300:CDS 40.0%
!! GAATTGGTTGGTGTCATTCA+AGG - chr3_2:57696315-57696334 Msa0413300:CDS 40.0%
! ACTTTTGCCAAATCCTTTGG+TGG + chr3_2:57696372-57696391 None:intergenic 40.0%
!! CCTACTTTTGCCAAATCCTT+TGG + chr3_2:57696375-57696394 None:intergenic 40.0%
CCAAAGGATTTGGCAAAAGT+AGG - chr3_2:57696372-57696391 Msa0413300:CDS 40.0%
! TGATGTGGACTATGCATACA+TGG - chr3_2:57696488-57696507 Msa0413300:CDS 40.0%
ATTAAGTTTGGGGACATGGA+TGG - chr3_2:57696743-57696762 Msa0413300:intron 40.0%
CTAAGCATAGCCCAACTATT+TGG + chr3_2:57696813-57696832 None:intergenic 40.0%
!! TATCATGAAGGGCCATTTTC+AGG - chr3_2:57697002-57697021 Msa0413300:intron 40.0%
!! ATCATGAAGGGCCATTTTCA+GGG - chr3_2:57697003-57697022 Msa0413300:intron 40.0%
! TTCACTAGCTTCCCTGAAAA+TGG + chr3_2:57697017-57697036 None:intergenic 40.0%
CAAAAAGAGCTCTTGTAGGT+GGG + chr3_2:57697247-57697266 None:intergenic 40.0%
ACAAAAAGAGCTCTTGTAGG+TGG + chr3_2:57697248-57697267 None:intergenic 40.0%
! TCTTTTTGTAGACCCAAGAG+AGG - chr3_2:57697259-57697278 Msa0413300:CDS 40.0%
! GTTTAGAATCAGAAGCTACG+AGG - chr3_2:57695634-57695653 Msa0413300:CDS 40.0%
GTTTCTCTTCACAGACACTA+TGG - chr3_2:57695727-57695746 Msa0413300:CDS 40.0%
CATTGTGGCCGCAATATAAA+GGG + chr3_2:57696029-57696048 None:intergenic 40.0%
AGCAGAGTTGGACAATGAAT+TGG - chr3_2:57696299-57696318 Msa0413300:CDS 40.0%
GAGTTGGACAATGAATTGGT+TGG - chr3_2:57696303-57696322 Msa0413300:CDS 40.0%
!! GAATTGGTTGGTGTCATTCA+AGG - chr3_2:57696315-57696334 Msa0413300:CDS 40.0%
! ACTTTTGCCAAATCCTTTGG+TGG + chr3_2:57696372-57696391 None:intergenic 40.0%
!! CCTACTTTTGCCAAATCCTT+TGG + chr3_2:57696375-57696394 None:intergenic 40.0%
CCAAAGGATTTGGCAAAAGT+AGG - chr3_2:57696372-57696391 Msa0413300:CDS 40.0%
! TGATGTGGACTATGCATACA+TGG - chr3_2:57696488-57696507 Msa0413300:CDS 40.0%
ATTAAGTTTGGGGACATGGA+TGG - chr3_2:57696743-57696762 Msa0413300:intron 40.0%
CTAAGCATAGCCCAACTATT+TGG + chr3_2:57696813-57696832 None:intergenic 40.0%
!! TATCATGAAGGGCCATTTTC+AGG - chr3_2:57697002-57697021 Msa0413300:intron 40.0%
!! ATCATGAAGGGCCATTTTCA+GGG - chr3_2:57697003-57697022 Msa0413300:intron 40.0%
! TTCACTAGCTTCCCTGAAAA+TGG + chr3_2:57697017-57697036 None:intergenic 40.0%
CAAAAAGAGCTCTTGTAGGT+GGG + chr3_2:57697247-57697266 None:intergenic 40.0%
ACAAAAAGAGCTCTTGTAGG+TGG + chr3_2:57697248-57697267 None:intergenic 40.0%
! TCTTTTTGTAGACCCAAGAG+AGG - chr3_2:57697259-57697278 Msa0413300:CDS 40.0%
CCATTGTGGCCGCAATATAA+AGG + chr3_2:57696030-57696049 None:intergenic 45.0%
CCTTTATATTGCGGCCACAA+TGG - chr3_2:57696027-57696046 Msa0413300:CDS 45.0%
TACAGTTGTGGCTGCACTTA+CGG + chr3_2:57696197-57696216 None:intergenic 45.0%
TGCAGCCACAACTGTATATG+CGG - chr3_2:57696201-57696220 Msa0413300:CDS 45.0%
TGGATGTTAGGTAGCAGAGT+TGG - chr3_2:57696287-57696306 Msa0413300:CDS 45.0%
TGTTCAAGGACATCCACCAA+AGG - chr3_2:57696356-57696375 Msa0413300:CDS 45.0%
AGGACATCCACCAAAGGATT+TGG - chr3_2:57696362-57696381 Msa0413300:CDS 45.0%
TGGAGATACCCTTAAGCCTA+GGG + chr3_2:57696403-57696422 None:intergenic 45.0%
GTTGGGCTATGCTTAGTGTA+TGG - chr3_2:57696817-57696836 Msa0413300:intron 45.0%
CATGAGAGCAACTTCCAATG+TGG + chr3_2:57697146-57697165 None:intergenic 45.0%
TCTCATGCCCTGAAGATTTG+TGG - chr3_2:57697159-57697178 Msa0413300:CDS 45.0%
! AGCTCTTGTAGGTGGGATTT+TGG + chr3_2:57697240-57697259 None:intergenic 45.0%
CCATTGTGGCCGCAATATAA+AGG + chr3_2:57696030-57696049 None:intergenic 45.0%
CCTTTATATTGCGGCCACAA+TGG - chr3_2:57696027-57696046 Msa0413300:CDS 45.0%
TACAGTTGTGGCTGCACTTA+CGG + chr3_2:57696197-57696216 None:intergenic 45.0%
TGCAGCCACAACTGTATATG+CGG - chr3_2:57696201-57696220 Msa0413300:CDS 45.0%
TGGATGTTAGGTAGCAGAGT+TGG - chr3_2:57696287-57696306 Msa0413300:CDS 45.0%
TGTTCAAGGACATCCACCAA+AGG - chr3_2:57696356-57696375 Msa0413300:CDS 45.0%
AGGACATCCACCAAAGGATT+TGG - chr3_2:57696362-57696381 Msa0413300:CDS 45.0%
TGGAGATACCCTTAAGCCTA+GGG + chr3_2:57696403-57696422 None:intergenic 45.0%
GTTGGGCTATGCTTAGTGTA+TGG - chr3_2:57696817-57696836 Msa0413300:intron 45.0%
CATGAGAGCAACTTCCAATG+TGG + chr3_2:57697146-57697165 None:intergenic 45.0%
TCTCATGCCCTGAAGATTTG+TGG - chr3_2:57697159-57697178 Msa0413300:CDS 45.0%
! AGCTCTTGTAGGTGGGATTT+TGG + chr3_2:57697240-57697259 None:intergenic 45.0%
CTATGGGTGACCCCATTTGT+AGG - chr3_2:57695744-57695763 Msa0413300:CDS 50.0%
CAGTCCCATGTACATGATGC+TGG - chr3_2:57695775-57695794 Msa0413300:CDS 50.0%
GTGGTCCGCATATACAGTTG+TGG + chr3_2:57696209-57696228 None:intergenic 50.0%
GCAAAAGTAGGGTATGCCCT+AGG - chr3_2:57696384-57696403 Msa0413300:CDS 50.0%
TAGGGTATGCCCTAGGCTTA+AGG - chr3_2:57696391-57696410 Msa0413300:CDS 50.0%
AGGGTATGCCCTAGGCTTAA+GGG - chr3_2:57696392-57696411 Msa0413300:CDS 50.0%
GTGGAGATACCCTTAAGCCT+AGG + chr3_2:57696404-57696423 None:intergenic 50.0%
CTATGGGTGACCCCATTTGT+AGG - chr3_2:57695744-57695763 Msa0413300:CDS 50.0%
CAGTCCCATGTACATGATGC+TGG - chr3_2:57695775-57695794 Msa0413300:CDS 50.0%
GTGGTCCGCATATACAGTTG+TGG + chr3_2:57696209-57696228 None:intergenic 50.0%
GCAAAAGTAGGGTATGCCCT+AGG - chr3_2:57696384-57696403 Msa0413300:CDS 50.0%
TAGGGTATGCCCTAGGCTTA+AGG - chr3_2:57696391-57696410 Msa0413300:CDS 50.0%
AGGGTATGCCCTAGGCTTAA+GGG - chr3_2:57696392-57696411 Msa0413300:CDS 50.0%
GTGGAGATACCCTTAAGCCT+AGG + chr3_2:57696404-57696423 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 57695620 57697286 57695620 ID=Msa0413300;Name=Msa0413300
chr3_2 mRNA 57695620 57697286 57695620 ID=Msa0413300-mRNA-1;Parent=Msa0413300;Name=Msa0413300-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|0|1|2|0|388
chr3_2 exon 57697110 57697286 57697110 ID=Msa0413300-mRNA-1:exon:11871;Parent=Msa0413300-mRNA-1
chr3_2 exon 57695620 57696609 57695620 ID=Msa0413300-mRNA-1:exon:11870;Parent=Msa0413300-mRNA-1
chr3_2 CDS 57697110 57697286 57697110 ID=Msa0413300-mRNA-1:cds;Parent=Msa0413300-mRNA-1
chr3_2 CDS 57695620 57696609 57695620 ID=Msa0413300-mRNA-1:cds;Parent=Msa0413300-mRNA-1
Gene Sequence

>Msa0413300

ATGGAATTCAACAAGTTTAGAATCAGAAGCTACGAGGGTCAATCAGCTGATAGAGCTCAAGTTGAAAATTTAGAGAGAAAATGTGAGGTAGGACCATCAGAAAGTGTGTTTCTCTTCACAGACACTATGGGTGACCCCATTTGTAGGATTCGAAACAGTCCCATGTACATGATGCTGGTAGCAGAGTTGGACAATGAATTGGTTGGTGTCATTCAAGGCTCTATAAAAGTTGTAACTGTTCAAGGACATCCACCAAAGGATTTGGCAAAAGTAGGGTATGCCCTAGGCTTAAGGGTATCTCCACATCATAGAAGAAAAGGGATTGGTTCAAGCCTAGTAAGAACATTAGAAGAATGGTTCATTTCTAATGATGTGGACTATGCATACATGGCAACAGAGAAAGATAATCATGCATCAGTCAATCTCTTCATGAACAAGTTTAACTACACAAAGTTTAGGACACCATCTATTCTTGTTAACCCTGTGAACCATCACTCATTAAAAATCTCAAACAACATTGAAATATCAAGGTTAAAAATTGAACAAGCTGAATCACTCTATAGAAGATTCATGGGGTCCACAGAGTTTTTTCCTAATGATATAGGAAATATATTAAGGAATAAATTAAGTTTGGGGACATGGATGGCATATTTTAAAGATGATATTAATATTGGGCCTAATGGACAAGTACCAAATAGTTGGGCTATGCTTAGTGTATGGAATAGTGGTGAGATATTCAAGTTAAAGATAGGAAAAGCACCTTTTTGTTGTTTGTTATACACAAAAAGTTGGTGCTTGATTGATAAAATTTTCCCATGTTTAAAATTGCCTACTTTACCTGATTTCTTTAACCCTTTTGGATTTTATTTTATGTATGGTGTGTATCATGAAGGGCCATTTTCAGGGAAGCTAGTGAAAGCTCTATGTCAATTTGTGCACAATATGGCTAAAGAGAGTAAAGATGAGAAGTGTACGATTATTGTGACTGAAGTTGGAGGAAGAGATGAACTCAATCATCACATTCCACATTGGAAGTTGCTCTCATGCCCTGAAGATTTGTGGTGCATAAAGGCACTGAAAAATGAAGGACTTTCAATTAATACTTTTCATGAATTAACCAAAATCCCACCTACAAGAGCTCTTTTTGTAGACCCAAGAGAGGTTTAA

Protein sequence

>Msa0413300

MEFNKFRIRSYEGQSADRAQVENLERKCEVGPSESVFLFTDTMGDPICRIRNSPMYMMLVAELDNELVGVIQGSIKVVTVQGHPPKDLAKVGYALGLRVSPHHRRKGIGSSLVRTLEEWFISNDVDYAYMATEKDNHASVNLFMNKFNYTKFRTPSILVNPVNHHSLKISNNIEISRLKIEQAESLYRRFMGSTEFFPNDIGNILRNKLSLGTWMAYFKDDINIGPNGQVPNSWAMLSVWNSGEIFKLKIGKAPFCCLLYTKSWCLIDKIFPCLKLPTLPDFFNPFGFYFMYGVYHEGPFSGKLVKALCQFVHNMAKESKDEKCTIIVTEVGGRDELNHHIPHWKLLSCPEDLWCIKALKNEGLSINTFHELTKIPPTRALFVDPREV*