AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0417370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417370 MtrunA17_Chr3g0114801 98.230 452 7 1 1 451 1 452 0.0 917
Msa0417370 MtrunA17_Chr4g0047481 96.896 451 14 0 1 451 1 451 0.0 907
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417370 AT4G17020.1 74.667 450 114 0 1 450 1 450 0.0 724
Msa0417370 AT4G17020.3 74.667 450 114 0 1 450 1 450 0.0 724
Msa0417370 AT4G17020.2 74.667 450 114 0 1 450 1 450 0.0 723

Find 118 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGAAGAGCTTATGTTTA+AGG 0.129241 3_2:-64531637 None:intergenic
AAGCCACTCTCAGTTAATTT+TGG 0.189946 3_2:-64531824 None:intergenic
GAGAATGGAGTGGTTTATTA+TGG 0.194734 3_2:+64535083 Msa0417370:CDS
TGTAGCTTTCTTACTACTTT+TGG 0.229854 3_2:-64535177 None:intergenic
ATAATCAATTGAAGAGAAAT+TGG 0.243117 3_2:+64529449 Msa0417370:five_prime_UTR
ATTACAAGCTTATATCATTA+AGG 0.262366 3_2:+64535398 Msa0417370:three_prime_UTR
ACCTGTGCCGGCTAAGTTAT+TGG 0.271234 3_2:+64530233 Msa0417370:CDS
CAAAGTTGCCATTGATAGAT+TGG 0.301692 3_2:+64530290 Msa0417370:CDS
ATTTCAGAGGAACATAATTA+AGG 0.312303 3_2:+64532324 Msa0417370:CDS
ACACATTCTGATGCATCTTA+TGG 0.322058 3_2:+64535197 Msa0417370:three_prime_UTR
CCACTACAATCTTGTTAATA+AGG 0.326913 3_2:+64529494 Msa0417370:five_prime_UTR
GATCATTGCCAAGAATTTCA+TGG 0.333040 3_2:+64529694 Msa0417370:CDS
CACCATGTCCATGAAATTCT+TGG 0.335342 3_2:-64529702 None:intergenic
CAACTTCCAAATCTTATTGT+TGG 0.350456 3_2:+64534246 Msa0417370:CDS
AATTATGTTCCTCTGAAATT+CGG 0.351671 3_2:-64532320 None:intergenic
AGATTCAAAGAAGATGCTTT+TGG 0.356097 3_2:+64535108 Msa0417370:CDS
ATAGCTCCAACAATAAGATT+TGG 0.356315 3_2:-64534252 None:intergenic
CACAACTTTGGTACATCATC+AGG 0.365045 3_2:+64531956 Msa0417370:CDS
GTAGAGTTTATCAAGTTTGA+TGG 0.368766 3_2:-64529738 None:intergenic
TGGAAGGAAGGAAGCGGGTT+CGG 0.376833 3_2:-64529350 None:intergenic
TCATGGTTATCATTGCATAT+TGG 0.378871 3_2:-64535224 None:intergenic
TGTGAGGCTCCCAACCTTAG+AGG 0.379390 3_2:+64531356 Msa0417370:CDS
GGCTAAGTTATTGGAGGAAT+GGG 0.394224 3_2:+64530242 Msa0417370:CDS
TTACAGTTATTGCATATTGA+TGG 0.396001 3_2:+64530210 Msa0417370:CDS
TGGGCTGGTCAAACTTCAAC+AGG 0.402831 3_2:+64532360 Msa0417370:CDS
ATAAGTCTCAAGATCCTCTA+AGG 0.406525 3_2:-64531370 None:intergenic
AGAATGGAGTGGTTTATTAT+GGG 0.410978 3_2:+64535084 Msa0417370:CDS
TTGTGCTTTGATAGACCATC+TGG 0.426688 3_2:-64530270 None:intergenic
ACCCGTGTACTAAAAGATTC+TGG 0.429826 3_2:-64530957 None:intergenic
AAATCAAAATGCCTGAGGTT+AGG 0.443637 3_2:+64529672 Msa0417370:exon
GCCTGAAAATGTCACAGATC+AGG 0.448319 3_2:+64534797 Msa0417370:CDS
CCTGTGACTGCGCCAGAGAA+TGG 0.448807 3_2:+64535068 Msa0417370:CDS
CAAAAGAAAAGAAGGGAAGC+GGG 0.453713 3_2:+64529280 None:intergenic
TTAAGGACCTTGCAGACCTT+GGG 0.454174 3_2:+64532341 Msa0417370:CDS
CTTGATAAACTCTACGAGAA+TGG 0.454631 3_2:+64529746 Msa0417370:CDS
ATTAAGGACCTTGCAGACCT+TGG 0.455377 3_2:+64532340 Msa0417370:CDS
AAATAAATCAAAAGAAAAGA+AGG 0.460015 3_2:+64529272 None:intergenic
CGGCTAAGTTATTGGAGGAA+TGG 0.470454 3_2:+64530241 Msa0417370:CDS
TCCAATAACTTAGCCGGCAC+AGG 0.471035 3_2:-64530234 None:intergenic
TCAAAAGAAAAGAAGGGAAG+CGG 0.476816 3_2:+64529279 None:intergenic
TGCAGATAGTCAGTTTCCTT+CGG 0.477880 3_2:+64534733 Msa0417370:intron
AGCCTCACAGTAATATTAGA+AGG 0.477881 3_2:-64531342 None:intergenic
TCAAAGTTGCTTACCCTGGA+TGG 0.478380 3_2:-64534960 None:intergenic
AAGGTCTTGTCAACATGACT+TGG 0.480094 3_2:-64531618 None:intergenic
TATAGGGCAGGAAAGAAAGT+TGG 0.482264 3_2:+64532510 Msa0417370:intron
GTCTCAAGATCCTCTAAGGT+TGG 0.483810 3_2:-64531366 None:intergenic
TAATAAACCACTCCATTCTC+TGG 0.489013 3_2:-64535080 None:intergenic
ATCTCTAATAAGTTGATAGC+AGG 0.492285 3_2:+64529407 Msa0417370:five_prime_UTR
TGGATACAAATGCACAACTT+TGG 0.500692 3_2:+64531944 Msa0417370:CDS
TCTCAAGATCCTCTAAGGTT+GGG 0.504105 3_2:-64531365 None:intergenic
TGAATCATCATCAAGAAAAG+AGG 0.506736 3_2:+64532577 Msa0417370:CDS
AGTTTATCAAGTTTGATGGC+AGG 0.511969 3_2:-64529734 None:intergenic
CAATTGAACCAATCTATCAA+TGG 0.514654 3_2:-64530298 None:intergenic
GACTTATGCTGTGGAACAAT+GGG 0.515674 3_2:+64531386 Msa0417370:CDS
GTAAACAGAACCTCTGACTC+AGG 0.517111 3_2:-64531683 None:intergenic
TCATCTGCGAAGCTATTCTC+AGG 0.522090 3_2:+64529771 Msa0417370:CDS
CATTCCTCCAATAACTTAGC+CGG 0.523734 3_2:-64530240 None:intergenic
AATAAATCAAAAGAAAAGAA+GGG 0.530742 3_2:+64529273 None:intergenic
TGCCAAGAATTTCATGGACA+TGG 0.531687 3_2:+64529700 Msa0417370:CDS
GTGGTGACAGATTAGGTTGT+GGG 0.535695 3_2:+64534884 Msa0417370:intron
GGACCTTGCAGACCTTGGGC+TGG 0.536902 3_2:+64532345 Msa0417370:CDS
CAGGAGAGAGGTGTTGATGC+TGG 0.539060 3_2:+64532077 Msa0417370:intron
GTGTGGCAGGATGTATTTGA+AGG 0.539271 3_2:+64535043 Msa0417370:intron
TCTGACTCAGGAGACGCCGC+TGG 0.540398 3_2:-64531671 None:intergenic
AGGTCTTGTCAACATGACTT+GGG 0.547217 3_2:-64531617 None:intergenic
CAATGGCATTACAGCAGACC+AGG 0.547595 3_2:+64534305 Msa0417370:CDS
CCACATTGCTCCCTCCATCA+TGG 0.549036 3_2:-64535241 None:intergenic
CCATTCTCTGGCGCAGTCAC+AGG 0.549704 3_2:-64535068 None:intergenic
TACTACTACACATGGATGGA+TGG 0.550277 3_2:-64529370 None:intergenic
CACATGGATGGATGGAAGGA+AGG 0.551191 3_2:-64529362 None:intergenic
ATTATGACGAGTTCCCATCC+AGG 0.551997 3_2:+64534946 Msa0417370:CDS
AACACATATTTCTTTGCAAG+AGG 0.556398 3_2:-64530189 None:intergenic
CCTTATTAACAAGATTGTAG+TGG 0.558275 3_2:-64529494 None:intergenic
GATGGATGGAAGGAAGGAAG+CGG 0.562789 3_2:-64529356 None:intergenic
AGACTTATGCTGTGGAACAA+TGG 0.563224 3_2:+64531385 Msa0417370:CDS
TCTAATAAGTTGATAGCAGG+TGG 0.566929 3_2:+64529410 Msa0417370:five_prime_UTR
AATTACACTGTGAGATATTG+CGG 0.567848 3_2:+64533906 Msa0417370:CDS
CAAAGTTGCTTACCCTGGAT+GGG 0.570298 3_2:-64534959 None:intergenic
ATTAACAAGATTGTAGTGGA+TGG 0.571304 3_2:-64529490 None:intergenic
ATTCAGTCATGCTCACTGAA+AGG 0.573028 3_2:-64532559 None:intergenic
TTAGAAGGCATTGATTCCCT+CGG 0.574898 3_2:-64531327 None:intergenic
TGCAATGATAACCATGATGG+AGG 0.576858 3_2:+64535230 Msa0417370:three_prime_UTR
TCATCCTCGTGTTGCACAGA+GGG 0.581937 3_2:+64534764 Msa0417370:CDS
GCTCCAAAATTAACTGAGAG+TGG 0.582979 3_2:+64531821 Msa0417370:CDS
ATGGATGGAAGGAAGGAAGC+GGG 0.583354 3_2:-64529355 None:intergenic
TGACTTGATATCATTCATGC+TGG 0.584712 3_2:+64532100 Msa0417370:CDS
TTGGCAATGATCCTAACCTC+AGG 0.587350 3_2:-64529683 None:intergenic
GGTGGTGACAGATTAGGTTG+TGG 0.588257 3_2:+64534883 Msa0417370:intron
GCATATTGATGGACCTGTGC+CGG 0.588398 3_2:+64530221 Msa0417370:CDS
AGCGGCGTCTCCTGAGTCAG+AGG 0.589108 3_2:+64531673 Msa0417370:CDS
AAGGAAGGAAGCGGGTTCGG+CGG 0.591782 3_2:-64529347 None:intergenic
TGATTACTACTACACATGGA+TGG 0.594138 3_2:-64529374 None:intergenic
GAGGAATGGGTGCTTCCAGA+TGG 0.595776 3_2:+64530255 Msa0417370:CDS
GAGGATGAGCATTCTGCCGA+AGG 0.597208 3_2:-64534749 None:intergenic
GTTGAAGTTTGACCAGCCCA+AGG 0.597505 3_2:-64532357 None:intergenic
ATATGCAATGATAACCATGA+TGG 0.599153 3_2:+64535227 Msa0417370:three_prime_UTR
CAAGAATTTCATGGACATGG+TGG 0.599325 3_2:+64529703 Msa0417370:CDS
TTATGACGAGTTCCCATCCA+GGG 0.606538 3_2:+64534947 Msa0417370:CDS
TGTGCCGGCTAAGTTATTGG+AGG 0.608812 3_2:+64530236 Msa0417370:CDS
ACTACACATGGATGGATGGA+AGG 0.611856 3_2:-64529366 None:intergenic
TGACCAGCCCAAGGTCTGCA+AGG 0.612502 3_2:-64532348 None:intergenic
ACATATTTCTTTGCAAGAGG+CGG 0.617514 3_2:-64530186 None:intergenic
ACACATTGACCGAATTTCAG+AGG 0.620159 3_2:+64532311 Msa0417370:CDS
AAATTGATTACTACTACACA+TGG 0.626945 3_2:-64529378 None:intergenic
GGAATATATCACTAATTCTG+AGG 0.632294 3_2:+64531978 Msa0417370:CDS
AAAAGAAAAGAAGGGAAGCG+GGG 0.635078 3_2:+64529281 None:intergenic
GGATCTTGAGACTTATGCTG+TGG 0.646865 3_2:+64531377 Msa0417370:CDS
GCAATGATAACCATGATGGA+GGG 0.649397 3_2:+64535231 Msa0417370:three_prime_UTR
TGGCAGTGGAACTTTGCCGA+GGG 0.654665 3_2:+64531311 Msa0417370:intron
ATGGCAGTGGAACTTTGCCG+AGG 0.657791 3_2:+64531310 Msa0417370:intron
ACAACTTTGGTACATCATCA+GGG 0.674313 3_2:+64531957 Msa0417370:CDS
CTCATCCTCGTGTTGCACAG+AGG 0.680297 3_2:+64534763 Msa0417370:CDS
AAACGAAATCAAAATGCCTG+AGG 0.682481 3_2:+64529667 Msa0417370:exon
GGTACCCTCTGTGCAACACG+AGG 0.694512 3_2:-64534768 None:intergenic
TGCCTTCTAATATTACTGTG+AGG 0.698083 3_2:+64531340 Msa0417370:CDS
TTATGCTGTGGAACAATGGG+AGG 0.705086 3_2:+64531389 Msa0417370:CDS
CCATGATGGAGGGAGCAATG+TGG 0.730856 3_2:+64535241 Msa0417370:three_prime_UTR
GACTGCGCCAGAGAATGGAG+TGG 0.741961 3_2:+64535073 Msa0417370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAATATACATAATAAAA+AGG - chr3_2:64530770-64530789 None:intergenic 10.0%
!!! TTTTTTTTTTACAACTTTAT+AGG + chr3_2:64532493-64532512 Msa0417370:intron 10.0%
!!! TTTTTTTTTACAACTTTATA+GGG + chr3_2:64532494-64532513 Msa0417370:intron 10.0%
!! ATTAATAAATATAAATGTAG+CGG + chr3_2:64533121-64533140 Msa0417370:intron 10.0%
!!! TAATTTTACTTTTTAAATTG+TGG + chr3_2:64534351-64534370 Msa0417370:intron 10.0%
!!! ATTAAAAGATTATAATTTTG+CGG + chr3_2:64535368-64535387 Msa0417370:three_prime_UTR 10.0%
!! ATTAAGACAAATTATTAAAG+TGG - chr3_2:64531498-64531517 None:intergenic 15.0%
!! TTAAGTTTAATAGAAAGTTT+AGG + chr3_2:64532629-64532648 Msa0417370:intron 15.0%
!! TAAGTTTAATAGAAAGTTTA+GGG + chr3_2:64532630-64532649 Msa0417370:intron 15.0%
!! AATGCTAATGTAAAAAATAT+AGG - chr3_2:64533156-64533175 None:intergenic 15.0%
!! AAATTTAATTAAAAGGAAAG+AGG - chr3_2:64533328-64533347 None:intergenic 15.0%
!!! AATTTTGTTCATATGTATAT+AGG + chr3_2:64533403-64533422 Msa0417370:intron 15.0%
!!! TCATTCTATTTAATTTTTTC+AGG + chr3_2:64533832-64533851 Msa0417370:intron 15.0%
!!! CATTCTATTTAATTTTTTCA+GGG + chr3_2:64533833-64533852 Msa0417370:intron 15.0%
!!! ACATACAATAATATTTTTGA+GGG - chr3_2:64534210-64534229 None:intergenic 15.0%
!!! TACATACAATAATATTTTTG+AGG - chr3_2:64534211-64534230 None:intergenic 15.0%
!! TTAAGTTAAAAACATCATTA+AGG + chr3_2:64534600-64534619 Msa0417370:intron 15.0%
!! ATTTCTGATATTTAGTATTA+TGG + chr3_2:64534862-64534881 Msa0417370:intron 15.0%
!! ATAATCAATTGAAGAGAAAT+TGG + chr3_2:64529449-64529468 Msa0417370:five_prime_UTR 20.0%
!! TTTGAGAGAAATCATAAAAT+GGG + chr3_2:64530081-64530100 Msa0417370:intron 20.0%
!! CATACAAATCATAAAATGTT+AGG + chr3_2:64530157-64530176 Msa0417370:intron 20.0%
!!! ATTTTGTTTCAAATGACAAT+TGG + chr3_2:64530446-64530465 Msa0417370:intron 20.0%
!!! TGTATTCTAAAAGAAACAAA+GGG - chr3_2:64530632-64530651 None:intergenic 20.0%
!!! ATGTATTCTAAAAGAAACAA+AGG - chr3_2:64530633-64530652 None:intergenic 20.0%
!! GTGAAAAAAAATACTAAACT+GGG - chr3_2:64530879-64530898 None:intergenic 20.0%
!! CATAAAATTGTTAATATGAG+TGG + chr3_2:64531059-64531078 Msa0417370:intron 20.0%
!!! TTCATATGAATTTTGAATTC+CGG - chr3_2:64531192-64531211 None:intergenic 20.0%
!! ATTAAATTGCAGTTACAAAA+GGG - chr3_2:64532242-64532261 None:intergenic 20.0%
!! ATATTATATGCCTAATCATT+GGG - chr3_2:64532289-64532308 None:intergenic 20.0%
!! TATATTATATGCCTAATCAT+TGG - chr3_2:64532290-64532309 None:intergenic 20.0%
!! AAAACAAATCAATTGTGAAA+CGG - chr3_2:64532611-64532630 None:intergenic 20.0%
!! AAGCAAAGAAAAAAAAGAAT+GGG - chr3_2:64532848-64532867 None:intergenic 20.0%
!!! TAATCTTTTTTGTTAGAAGA+TGG + chr3_2:64532956-64532975 Msa0417370:intron 20.0%
!! ATTATGTCTTCAAAATGAAA+AGG + chr3_2:64533348-64533367 Msa0417370:intron 20.0%
!! TATAAGTACAAGATAAATTG+AGG - chr3_2:64534097-64534116 None:intergenic 20.0%
!! TTATAGCTGAATTAATAGTT+TGG - chr3_2:64534122-64534141 None:intergenic 20.0%
!! TTCACCAAAATATTATTGTT+TGG + chr3_2:64534159-64534178 Msa0417370:intron 20.0%
!!! AACACCAAACAATAATATTT+TGG - chr3_2:64534166-64534185 None:intergenic 20.0%
!! AAATATTATTGTATGTATGC+AGG + chr3_2:64534214-64534233 Msa0417370:intron 20.0%
!! AATATTATTGTATGTATGCA+GGG + chr3_2:64534215-64534234 Msa0417370:intron 20.0%
!! TATAATTTCTAATACTTACC+TGG - chr3_2:64534326-64534345 None:intergenic 20.0%
!! GAAACATGAAAAAATAATAG+TGG - chr3_2:64535282-64535301 None:intergenic 20.0%
!!! ATTTTGTTCCTTTTAGAAAA+AGG + chr3_2:64535306-64535325 Msa0417370:three_prime_UTR 20.0%
!!! CAATAAAACCTTTTTCTAAA+AGG - chr3_2:64535317-64535336 None:intergenic 20.0%
! AAATTGATTACTACTACACA+TGG - chr3_2:64529381-64529400 None:intergenic 25.0%
!!! TCGTTTTTCTAAACAAATGA+AGG - chr3_2:64529648-64529667 None:intergenic 25.0%
! GTTTGAGAGAAATCATAAAA+TGG + chr3_2:64530080-64530099 Msa0417370:intron 25.0%
! ATTTGTATGCATTAAAACCA+CGG - chr3_2:64530146-64530165 None:intergenic 25.0%
! TTACAGTTATTGCATATTGA+TGG + chr3_2:64530210-64530229 Msa0417370:CDS 25.0%
!!! AACAAGGTTTTATCACAAAA+AGG - chr3_2:64530536-64530555 None:intergenic 25.0%
! AAAGAGATTTAGCAAAAATC+AGG - chr3_2:64530602-64530621 None:intergenic 25.0%
!! TATTCTAAAAGAAACAAAGG+GGG - chr3_2:64530630-64530649 None:intergenic 25.0%
!! GTATTCTAAAAGAAACAAAG+GGG - chr3_2:64530631-64530650 None:intergenic 25.0%
! ACTTAAAGCAAATTCAAGAA+CGG - chr3_2:64530704-64530723 None:intergenic 25.0%
!! GAATTTGCTTTAAGTTAATG+AGG + chr3_2:64530709-64530728 Msa0417370:intron 25.0%
! GGTGAAAAAAAATACTAAAC+TGG - chr3_2:64530880-64530899 None:intergenic 25.0%
!! TTGTCTTCTTTTTCTATTCA+TGG + chr3_2:64530995-64531014 Msa0417370:intron 25.0%
! TTAACTCATAATACGTGATA+TGG - chr3_2:64531100-64531119 None:intergenic 25.0%
!!! ATTTTGGTCCTATAATTTCA+AGG - chr3_2:64531152-64531171 None:intergenic 25.0%
!! ATGACTATTATACAGCATTT+TGG - chr3_2:64531168-64531187 None:intergenic 25.0%
!! ACAACTTGAATGTTTGATTT+AGG + chr3_2:64531259-64531278 Msa0417370:intron 25.0%
! AAAAGTGGAATCAAAAGAAA+AGG - chr3_2:64531422-64531441 None:intergenic 25.0%
! TGTACAGATTAAACAAAAAG+TGG - chr3_2:64531437-64531456 None:intergenic 25.0%
! CATTAAATTGCAGTTACAAA+AGG - chr3_2:64532243-64532262 None:intergenic 25.0%
! TATTATATGCCTAATCATTG+GGG - chr3_2:64532288-64532307 None:intergenic 25.0%
!!! AATTATGTTCCTCTGAAATT+CGG - chr3_2:64532323-64532342 None:intergenic 25.0%
! ATTTCAGAGGAACATAATTA+AGG + chr3_2:64532324-64532343 Msa0417370:CDS 25.0%
!!! AAAACAAATTTTTGAGACAC+CGG - chr3_2:64532735-64532754 None:intergenic 25.0%
! GAAGCAAAGAAAAAAAAGAA+TGG - chr3_2:64532849-64532868 None:intergenic 25.0%
! ACATCATTAAAAATGTGTGA+AGG + chr3_2:64532882-64532901 Msa0417370:intron 25.0%
! TGTTAGAAGATGGATAAAAA+AGG + chr3_2:64532966-64532985 Msa0417370:intron 25.0%
!!! AATACTATCCAATCTTGTTT+TGG + chr3_2:64532992-64533011 Msa0417370:intron 25.0%
! AAAAAGTTCCAAAACAAGAT+TGG - chr3_2:64533003-64533022 None:intergenic 25.0%
! AAAAGGAAAGAGGAAATATA+AGG - chr3_2:64533318-64533337 None:intergenic 25.0%
!!! AACAAACATTAGTTTTCTGT+AGG - chr3_2:64533608-64533627 None:intergenic 25.0%
! TACAGAAAACTAATGTTTGT+TGG + chr3_2:64533607-64533626 Msa0417370:intron 25.0%
!!! TTCAGCTATAAAGCTTTAAA+CGG + chr3_2:64534131-64534150 Msa0417370:intron 25.0%
!! TTGTATAATGCTTTTGACAA+TGG + chr3_2:64534288-64534307 Msa0417370:CDS 25.0%
!! TTCAAATTTGACTTCTGTAA+AGG + chr3_2:64534433-64534452 Msa0417370:intron 25.0%
! TCTGATATTTAGTATTATGG+TGG + chr3_2:64534865-64534884 Msa0417370:intron 25.0%
AAGAAAAAGAAAACTCTCAC+TGG + chr3_2:64529317-64529336 Msa0417370:five_prime_UTR 30.0%
AGAAAAAGAAAACTCTCACT+GGG + chr3_2:64529318-64529337 Msa0417370:five_prime_UTR 30.0%
!! ATCTCTAATAAGTTGATAGC+AGG + chr3_2:64529407-64529426 Msa0417370:five_prime_UTR 30.0%
! ATTAACAAGATTGTAGTGGA+TGG - chr3_2:64529493-64529512 None:intergenic 30.0%
CCTTATTAACAAGATTGTAG+TGG - chr3_2:64529497-64529516 None:intergenic 30.0%
CCACTACAATCTTGTTAATA+AGG + chr3_2:64529494-64529513 Msa0417370:five_prime_UTR 30.0%
GTAGAGTTTATCAAGTTTGA+TGG - chr3_2:64529741-64529760 None:intergenic 30.0%
TTATCGAAACATGACCTTAA+TGG - chr3_2:64529832-64529851 None:intergenic 30.0%
GTACTTAAACAAGTACTTGT+GGG - chr3_2:64530051-64530070 None:intergenic 30.0%
AGTACTTAAACAAGTACTTG+TGG - chr3_2:64530052-64530071 None:intergenic 30.0%
AGTACTTGTTTAAGTACTTG+TGG + chr3_2:64530054-64530073 Msa0417370:intron 30.0%
GTACTTGTTTAAGTACTTGT+GGG + chr3_2:64530055-64530074 Msa0417370:intron 30.0%
AACACATATTTCTTTGCAAG+AGG - chr3_2:64530192-64530211 None:intergenic 30.0%
CAATTGAACCAATCTATCAA+TGG - chr3_2:64530301-64530320 None:intergenic 30.0%
CAGTATTTGATGTCACAATT+TGG + chr3_2:64530734-64530753 Msa0417370:intron 30.0%
ACTAAACTGGGATAAAACAA+GGG - chr3_2:64530867-64530886 None:intergenic 30.0%
TACTAAACTGGGATAAAACA+AGG - chr3_2:64530868-64530887 None:intergenic 30.0%
!!! ATTTTTTTTCACCTTCTTGC+AGG + chr3_2:64530887-64530906 Msa0417370:intron 30.0%
ATGTACCTTAATAGCAACAA+GGG - chr3_2:64531042-64531061 None:intergenic 30.0%
TATGTACCTTAATAGCAACA+AGG - chr3_2:64531043-64531062 None:intergenic 30.0%
TCATAATACGTGATATGGAA+GGG - chr3_2:64531095-64531114 None:intergenic 30.0%
TAACAAACCTATATAGACGA+TGG + chr3_2:64531117-64531136 Msa0417370:intron 30.0%
TGGTTACTCCTTGAAATTAT+AGG + chr3_2:64531141-64531160 Msa0417370:intron 30.0%
ATGCTGTATAATAGTCATTC+CGG + chr3_2:64531170-64531189 Msa0417370:intron 30.0%
! ACTTGAATGTTTGATTTAGG+TGG + chr3_2:64531262-64531281 Msa0417370:intron 30.0%
AACAAAGTCATTGGAGATTT+AGG - chr3_2:64531560-64531579 None:intergenic 30.0%
CAAAGAAGAGCTTATGTTTA+AGG - chr3_2:64531640-64531659 None:intergenic 30.0%
! CTTTGATGAAAATTTTCCAG+CGG + chr3_2:64531655-64531674 Msa0417370:CDS 30.0%
TGCATTACATTAAGTTCAAG+TGG - chr3_2:64531883-64531902 None:intergenic 30.0%
GGAATATATCACTAATTCTG+AGG + chr3_2:64531978-64531997 Msa0417370:CDS 30.0%
ATAGCAGAAACATATAGAGA+AGG - chr3_2:64532020-64532039 None:intergenic 30.0%
!! AGCTTAGTTTTCATGTCATT+GGG + chr3_2:64532123-64532142 Msa0417370:CDS 30.0%
!!! TGATTTTTTCCCCAATGATT+AGG + chr3_2:64532276-64532295 Msa0417370:intron 30.0%
AGATGCAGAATGATTTAACT+TGG + chr3_2:64532428-64532447 Msa0417370:intron 30.0%
! TTTTTACAACTTTATAGGGC+AGG + chr3_2:64532498-64532517 Msa0417370:intron 30.0%
!!! AGGTTTGTTGCTAATTTTGT+TGG - chr3_2:64532542-64532561 None:intergenic 30.0%
TGAATCATCATCAAGAAAAG+AGG + chr3_2:64532577-64532596 Msa0417370:CDS 30.0%
TATGAGTATCATATAGGTGT+CGG - chr3_2:64532795-64532814 None:intergenic 30.0%
GTGTTGTATGAGTATCATAT+AGG - chr3_2:64532801-64532820 None:intergenic 30.0%
! ACATTTTTAATGATGTGCCA+AGG - chr3_2:64532878-64532897 None:intergenic 30.0%
AAATATAAATGTAGCGGTGT+CGG + chr3_2:64533127-64533146 Msa0417370:intron 30.0%
! ATACGGTTTAGATGATCTTT+TGG + chr3_2:64533443-64533462 Msa0417370:intron 30.0%
! TACGGTTTAGATGATCTTTT+GGG + chr3_2:64533444-64533463 Msa0417370:intron 30.0%
ATATGTATGGAAGTTTCTGT+TGG + chr3_2:64533542-64533561 Msa0417370:intron 30.0%
AATTACACTGTGAGATATTG+CGG + chr3_2:64533906-64533925 Msa0417370:CDS 30.0%
!! AGATATTGCGGTTATTTTCA+AGG + chr3_2:64533918-64533937 Msa0417370:CDS 30.0%
ACAGCATTGCAGAAAATATT+TGG - chr3_2:64533951-64533970 None:intergenic 30.0%
CTTCCTATGGAAATTTAAAC+TGG + chr3_2:64534037-64534056 Msa0417370:intron 30.0%
CTTCCAGTTTAAATTTCCAT+AGG - chr3_2:64534043-64534062 None:intergenic 30.0%
!!! AAACTGGAAGTTGTTTTTCA+TGG + chr3_2:64534053-64534072 Msa0417370:intron 30.0%
!!! GAAGTTGTTTTTCATGGAAT+AGG + chr3_2:64534059-64534078 Msa0417370:intron 30.0%
CAACTTCCAAATCTTATTGT+TGG + chr3_2:64534246-64534265 Msa0417370:CDS 30.0%
ATAGCTCCAACAATAAGATT+TGG - chr3_2:64534255-64534274 None:intergenic 30.0%
TTCTTCAAATTTGACTCCTT+CGG - chr3_2:64534480-64534499 None:intergenic 30.0%
! TCAATTTGAGACTTGATATG+TGG + chr3_2:64534514-64534533 Msa0417370:intron 30.0%
TTCAAATGAAGAATTGAAGC+CGG - chr3_2:64534543-64534562 None:intergenic 30.0%
AGAATGGAGTGGTTTATTAT+GGG + chr3_2:64535084-64535103 Msa0417370:CDS 30.0%
! AGATTCAAAGAAGATGCTTT+TGG + chr3_2:64535108-64535127 Msa0417370:CDS 30.0%
! TGTAGCTTTCTTACTACTTT+TGG - chr3_2:64535180-64535199 None:intergenic 30.0%
TCATGGTTATCATTGCATAT+TGG - chr3_2:64535227-64535246 None:intergenic 30.0%
ATATGCAATGATAACCATGA+TGG + chr3_2:64535227-64535246 Msa0417370:three_prime_UTR 30.0%
GAAAAAGAAAACTCTCACTG+GGG + chr3_2:64529319-64529338 Msa0417370:five_prime_UTR 35.0%
TGATTACTACTACACATGGA+TGG - chr3_2:64529377-64529396 None:intergenic 35.0%
!! TCTAATAAGTTGATAGCAGG+TGG + chr3_2:64529410-64529429 Msa0417370:five_prime_UTR 35.0%
GGGAGAGTTACTAAAATTGA+AGG - chr3_2:64529537-64529556 None:intergenic 35.0%
!! TCAATTTTAGTAACTCTCCC+TGG + chr3_2:64529537-64529556 Msa0417370:intron 35.0%
!! CAATTTTAGTAACTCTCCCT+GGG + chr3_2:64529538-64529557 Msa0417370:intron 35.0%
TATGAGCAAAAAGAATCCCA+GGG - chr3_2:64529557-64529576 None:intergenic 35.0%
ATATGAGCAAAAAGAATCCC+AGG - chr3_2:64529558-64529577 None:intergenic 35.0%
AAACGAAATCAAAATGCCTG+AGG + chr3_2:64529667-64529686 Msa0417370:exon 35.0%
AAATCAAAATGCCTGAGGTT+AGG + chr3_2:64529672-64529691 Msa0417370:exon 35.0%
GATCATTGCCAAGAATTTCA+TGG + chr3_2:64529694-64529713 Msa0417370:CDS 35.0%
! AGTTTATCAAGTTTGATGGC+AGG - chr3_2:64529737-64529756 None:intergenic 35.0%
CTTGATAAACTCTACGAGAA+TGG + chr3_2:64529746-64529765 Msa0417370:CDS 35.0%
!! AATGGTAGGCATTGAGAAAT+AGG - chr3_2:64529814-64529833 None:intergenic 35.0%
TTTCTCAATGCCTACCATTA+AGG + chr3_2:64529815-64529834 Msa0417370:intron 35.0%
CAACTTATGGGCATATCATA+AGG + chr3_2:64530000-64530019 Msa0417370:intron 35.0%
ACATATTTCTTTGCAAGAGG+CGG - chr3_2:64530189-64530208 None:intergenic 35.0%
CAAAGTTGCCATTGATAGAT+TGG + chr3_2:64530290-64530309 Msa0417370:CDS 35.0%
! TTTTTGTTGAAGCTCTTGAC+AGG + chr3_2:64530325-64530344 Msa0417370:CDS 35.0%
! GACAATTTATGCCTCTGAAA+TGG + chr3_2:64530410-64530429 Msa0417370:intron 35.0%
ATCAGTTTGAACCATTTCAG+AGG - chr3_2:64530424-64530443 None:intergenic 35.0%
CCTTAGTTTAGGCTAACATT+TGG - chr3_2:64530472-64530491 None:intergenic 35.0%
! CCAAATGTTAGCCTAAACTA+AGG + chr3_2:64530469-64530488 Msa0417370:intron 35.0%
TTAGCCTAAACTAAGGAGTT+TGG + chr3_2:64530476-64530495 Msa0417370:intron 35.0%
TACACCTTGTAATGTGTTGA+AGG + chr3_2:64530509-64530528 Msa0417370:intron 35.0%
CACATGCAACAGATAAAACA+AGG - chr3_2:64530552-64530571 None:intergenic 35.0%
AACAAAGACACACAAAGATG+TGG - chr3_2:64530794-64530813 None:intergenic 35.0%
! CTCCAGAATCTTTTAGTACA+CGG + chr3_2:64530955-64530974 Msa0417370:CDS 35.0%
! TCCAGAATCTTTTAGTACAC+GGG + chr3_2:64530956-64530975 Msa0417370:CDS 35.0%
! TTGTTCCCTTGTTGCTATTA+AGG + chr3_2:64531034-64531053 Msa0417370:intron 35.0%
CTCATAATACGTGATATGGA+AGG - chr3_2:64531096-64531115 None:intergenic 35.0%
AAACCTATATAGACGATGGT+TGG + chr3_2:64531121-64531140 Msa0417370:intron 35.0%
TAACCAACCATCGTCTATAT+AGG - chr3_2:64531127-64531146 None:intergenic 35.0%
GTTCTTCTTGTGGTTGAATA+TGG + chr3_2:64531291-64531310 Msa0417370:intron 35.0%
TGCCTTCTAATATTACTGTG+AGG + chr3_2:64531340-64531359 Msa0417370:CDS 35.0%
AGCCTCACAGTAATATTAGA+AGG - chr3_2:64531345-64531364 None:intergenic 35.0%
ATAAGTCTCAAGATCCTCTA+AGG - chr3_2:64531373-64531392 None:intergenic 35.0%
!!! TCTCCAATGACTTTGTTTTG+CGG + chr3_2:64531563-64531582 Msa0417370:intron 35.0%
TTACCGCAAAACAAAGTCAT+TGG - chr3_2:64531569-64531588 None:intergenic 35.0%
TAAGTTGCAACAAGAAACAC+TGG - chr3_2:64531593-64531612 None:intergenic 35.0%
TTTGCACTCTGTCATATATG+TGG + chr3_2:64531738-64531757 Msa0417370:intron 35.0%
! AAGCCACTCTCAGTTAATTT+TGG - chr3_2:64531827-64531846 None:intergenic 35.0%
ATTTGATGCGTACCAAAAAC+TGG - chr3_2:64531850-64531869 None:intergenic 35.0%
TTGCTATGAATTACAGCTGA+TGG + chr3_2:64531924-64531943 Msa0417370:intron 35.0%
TGGATACAAATGCACAACTT+TGG + chr3_2:64531944-64531963 Msa0417370:CDS 35.0%
ACAACTTTGGTACATCATCA+GGG + chr3_2:64531957-64531976 Msa0417370:CDS 35.0%
TGACTTGATATCATTCATGC+TGG + chr3_2:64532100-64532119 Msa0417370:CDS 35.0%
!! GAGCTTAGTTTTCATGTCAT+TGG + chr3_2:64532122-64532141 Msa0417370:CDS 35.0%
!! GCTTAGTTTTCATGTCATTG+GGG + chr3_2:64532124-64532143 Msa0417370:CDS 35.0%
AAAAAGAATGGGACACTTGT+CGG - chr3_2:64532837-64532856 None:intergenic 35.0%
GATGTATAAGACAGTGAACA+GGG - chr3_2:64533296-64533315 None:intergenic 35.0%
! ACGGTTTAGATGATCTTTTG+GGG + chr3_2:64533445-64533464 Msa0417370:intron 35.0%
! CTGTTTTGCTTGCATATGTA+TGG + chr3_2:64533529-64533548 Msa0417370:intron 35.0%
AGTTTCTGTTGGACATTATC+AGG + chr3_2:64533553-64533572 Msa0417370:intron 35.0%
! GTTTTCTGTAGGTTGTAGTA+TGG - chr3_2:64533597-64533616 None:intergenic 35.0%
ATAACATGTCGATCGTTCAT+TGG + chr3_2:64533704-64533723 Msa0417370:intron 35.0%
!!! TTTTCAGGGATTTGTTGTTG+TGG + chr3_2:64533847-64533866 Msa0417370:intron 35.0%
GCATTGCAGAAAATATTTGG+TGG - chr3_2:64533948-64533967 None:intergenic 35.0%
GAACATGACAAAAGACTAGA+GGG - chr3_2:64533995-64534014 None:intergenic 35.0%
AGGAAGTTCAAAAACCCAAA+GGG - chr3_2:64534023-64534042 None:intergenic 35.0%
TAGGAAGTTCAAAAACCCAA+AGG - chr3_2:64534024-64534043 None:intergenic 35.0%
! TTGGGTTTTTGAACTTCCTA+TGG + chr3_2:64534024-64534043 Msa0417370:intron 35.0%
CTTCGGGATAACTACTTATA+AGG - chr3_2:64534463-64534482 None:intergenic 35.0%
CTTATAAGTAGTTATCCCGA+AGG + chr3_2:64534461-64534480 Msa0417370:intron 35.0%
TCTTCAAATTTGACTCCTTC+GGG - chr3_2:64534479-64534498 None:intergenic 35.0%
TTCACGTAGAATTTCAGTGA+AGG - chr3_2:64534569-64534588 None:intergenic 35.0%
! TATTATGGTGGTGACAGATT+AGG + chr3_2:64534877-64534896 Msa0417370:intron 35.0%
GATCAAAAAAGCCATAACAG+GGG - chr3_2:64535011-64535030 None:intergenic 35.0%
GGATCAAAAAAGCCATAACA+GGG - chr3_2:64535012-64535031 None:intergenic 35.0%
AGGATCAAAAAAGCCATAAC+AGG - chr3_2:64535013-64535032 None:intergenic 35.0%
! TGATCCTTATGTCATTTGTG+TGG + chr3_2:64535026-64535045 Msa0417370:intron 35.0%
TAATAAACCACTCCATTCTC+TGG - chr3_2:64535083-64535102 None:intergenic 35.0%
GAGAATGGAGTGGTTTATTA+TGG + chr3_2:64535083-64535102 Msa0417370:CDS 35.0%
! TTCAAAGAAGATGCTTTTGG+TGG + chr3_2:64535111-64535130 Msa0417370:CDS 35.0%
!! AGCTTTCTTACTACTTTTGG+CGG - chr3_2:64535177-64535196 None:intergenic 35.0%
ACACATTCTGATGCATCTTA+TGG + chr3_2:64535197-64535216 Msa0417370:three_prime_UTR 35.0%
TACTACTACACATGGATGGA+TGG - chr3_2:64529373-64529392 None:intergenic 40.0%
GAGAATCCACTCAGCAATAT+TGG - chr3_2:64529585-64529604 None:intergenic 40.0%
TGCCAAGAATTTCATGGACA+TGG + chr3_2:64529700-64529719 Msa0417370:CDS 40.0%
CACCATGTCCATGAAATTCT+TGG - chr3_2:64529705-64529724 None:intergenic 40.0%
CAAGAATTTCATGGACATGG+TGG + chr3_2:64529703-64529722 Msa0417370:CDS 40.0%
CGAAACATGACCTTAATGGT+AGG - chr3_2:64529828-64529847 None:intergenic 40.0%
AATAAGCTGCGAGCAACTTA+TGG + chr3_2:64529987-64530006 Msa0417370:intron 40.0%
ATAAGCTGCGAGCAACTTAT+GGG + chr3_2:64529988-64530007 Msa0417370:intron 40.0%
! ACAAGTACTTGTGGGCTATT+TGG - chr3_2:64530043-64530062 None:intergenic 40.0%
CATTCCTCCAATAACTTAGC+CGG - chr3_2:64530243-64530262 None:intergenic 40.0%
GGCTAAGTTATTGGAGGAAT+GGG + chr3_2:64530242-64530261 Msa0417370:CDS 40.0%
TTGTGCTTTGATAGACCATC+TGG - chr3_2:64530273-64530292 None:intergenic 40.0%
GTGTCCAAACTCCTTAGTTT+AGG - chr3_2:64530483-64530502 None:intergenic 40.0%
AGGTCCTTCAACACATTACA+AGG - chr3_2:64530516-64530535 None:intergenic 40.0%
ACAAGGGTCGAAAGTGAAAA+TGG - chr3_2:64530851-64530870 None:intergenic 40.0%
! TTTTCGTTCTTCCTGCAAGA+AGG - chr3_2:64530901-64530920 None:intergenic 40.0%
ACCCGTGTACTAAAAGATTC+TGG - chr3_2:64530960-64530979 None:intergenic 40.0%
!! TTAGAAGGCATTGATTCCCT+CGG - chr3_2:64531330-64531349 None:intergenic 40.0%
!! TCTCAAGATCCTCTAAGGTT+GGG - chr3_2:64531368-64531387 None:intergenic 40.0%
AGACTTATGCTGTGGAACAA+TGG + chr3_2:64531385-64531404 Msa0417370:CDS 40.0%
GACTTATGCTGTGGAACAAT+GGG + chr3_2:64531386-64531405 Msa0417370:CDS 40.0%
! AGGTCTTGTCAACATGACTT+GGG - chr3_2:64531620-64531639 None:intergenic 40.0%
! AAGGTCTTGTCAACATGACT+TGG - chr3_2:64531621-64531640 None:intergenic 40.0%
GCTCCAAAATTAACTGAGAG+TGG + chr3_2:64531821-64531840 Msa0417370:CDS 40.0%
CACAACTTTGGTACATCATC+AGG + chr3_2:64531956-64531975 Msa0417370:CDS 40.0%
! TAGTTTTCATGTCATTGGGG+AGG + chr3_2:64532127-64532146 Msa0417370:CDS 40.0%
ACACATTGACCGAATTTCAG+AGG + chr3_2:64532311-64532330 Msa0417370:CDS 40.0%
TATAGGGCAGGAAAGAAAGT+TGG + chr3_2:64532510-64532529 Msa0417370:intron 40.0%
ATTCAGTCATGCTCACTGAA+AGG - chr3_2:64532562-64532581 None:intergenic 40.0%
GAAAGTTTAGGGAAACTCCT+TGG + chr3_2:64532641-64532660 Msa0417370:intron 40.0%
TATGAAGCATGGACACCTAA+AGG + chr3_2:64532665-64532684 Msa0417370:intron 40.0%
GATACTCATACAACACGTGT+TGG + chr3_2:64532805-64532824 Msa0417370:intron 40.0%
AAGGCAATGTTGATCAACGA+GGG + chr3_2:64532901-64532920 Msa0417370:intron 40.0%
GGATGTATAAGACAGTGAAC+AGG - chr3_2:64533297-64533316 None:intergenic 40.0%
! CGGTTTAGATGATCTTTTGG+GGG + chr3_2:64533446-64533465 Msa0417370:intron 40.0%
!! TTAGATGATCTTTTGGGGGA+AGG + chr3_2:64533450-64533469 Msa0417370:intron 40.0%
!! TAGATGATCTTTTGGGGGAA+GGG + chr3_2:64533451-64533470 Msa0417370:intron 40.0%
TCTGTAGGTTGTAGTATGGA+CGG - chr3_2:64533593-64533612 None:intergenic 40.0%
! CATCAGTCTGAAGTAGTAAC+AGG - chr3_2:64533679-64533698 None:intergenic 40.0%
TGAACGATCGACATGTTATG+AGG - chr3_2:64533703-64533722 None:intergenic 40.0%
GGAACATGACAAAAGACTAG+AGG - chr3_2:64533996-64534015 None:intergenic 40.0%
TTCAAAAACCCAAAGGGAAG+GGG - chr3_2:64534017-64534036 None:intergenic 40.0%
GTTCAAAAACCCAAAGGGAA+GGG - chr3_2:64534018-64534037 None:intergenic 40.0%
AGTTCAAAAACCCAAAGGGA+AGG - chr3_2:64534019-64534038 None:intergenic 40.0%
ATTGTGGTACTCACTGTAGA+TGG + chr3_2:64534367-64534386 Msa0417370:intron 40.0%
TGCAGATAGTCAGTTTCCTT+CGG + chr3_2:64534733-64534752 Msa0417370:intron 40.0%
! ACCTGATCTGTGACATTTTC+AGG - chr3_2:64534801-64534820 None:intergenic 40.0%
AGAATCAAAGTTGCTTACCC+TGG - chr3_2:64534967-64534986 None:intergenic 40.0%
GTCTTACATATCCCCTGTTA+TGG + chr3_2:64534997-64535016 Msa0417370:intron 40.0%
TGCAATGATAACCATGATGG+AGG + chr3_2:64535230-64535249 Msa0417370:three_prime_UTR 40.0%
! GCAATGATAACCATGATGGA+GGG + chr3_2:64535231-64535250 Msa0417370:three_prime_UTR 40.0%
ACTACACATGGATGGATGGA+AGG - chr3_2:64529369-64529388 None:intergenic 45.0%
ATTGCGCCAATATTGCTGAG+TGG + chr3_2:64529576-64529595 Msa0417370:intron 45.0%
TTGGCAATGATCCTAACCTC+AGG - chr3_2:64529686-64529705 None:intergenic 45.0%
TCATCTGCGAAGCTATTCTC+AGG + chr3_2:64529771-64529790 Msa0417370:CDS 45.0%
GGGCTATTTGGAAGAGCTTA+TGG - chr3_2:64530031-64530050 None:intergenic 45.0%
!!! TGAGTTTTGAATGTGCTCCG+TGG + chr3_2:64530126-64530145 Msa0417370:intron 45.0%
CGGCTAAGTTATTGGAGGAA+TGG + chr3_2:64530241-64530260 Msa0417370:CDS 45.0%
GTGGTAACACGTTCTTCTTG+TGG + chr3_2:64531281-64531300 Msa0417370:intron 45.0%
CTTGTGGTTGAATATGGCAG+TGG + chr3_2:64531297-64531316 Msa0417370:intron 45.0%
!! GTCTCAAGATCCTCTAAGGT+TGG - chr3_2:64531369-64531388 None:intergenic 45.0%
GGATCTTGAGACTTATGCTG+TGG + chr3_2:64531377-64531396 Msa0417370:CDS 45.0%
TTATGCTGTGGAACAATGGG+AGG + chr3_2:64531389-64531408 Msa0417370:CDS 45.0%
GTAAACAGAACCTCTGACTC+AGG - chr3_2:64531686-64531705 None:intergenic 45.0%
! TGAGAGTGGCTTCCAGTTTT+TGG + chr3_2:64531835-64531854 Msa0417370:CDS 45.0%
! TGCTCTTCATCGTCCACTTT+TGG + chr3_2:64532052-64532071 Msa0417370:intron 45.0%
TGTGCAACAGATTCTCAGCA+AGG - chr3_2:64532168-64532187 None:intergenic 45.0%
ATTAAGGACCTTGCAGACCT+TGG + chr3_2:64532340-64532359 Msa0417370:CDS 45.0%
TTAAGGACCTTGCAGACCTT+GGG + chr3_2:64532341-64532360 Msa0417370:CDS 45.0%
CTGGTCAAACTTCAACAGGT+TGG + chr3_2:64532364-64532383 Msa0417370:intron 45.0%
AACTCCTTGGCTATGAAGCA+TGG + chr3_2:64532654-64532673 Msa0417370:intron 45.0%
GCATGGACACCTAAAGGATT+AGG + chr3_2:64532671-64532690 Msa0417370:intron 45.0%
CTAAAGGATTAGGCGTGTCA+CGG + chr3_2:64532681-64532700 Msa0417370:intron 45.0%
TTCTTTGCTTCGACACTCGT+TGG + chr3_2:64532761-64532780 Msa0417370:intron 45.0%
TTCTTTGCTTCGACACACCT+TGG + chr3_2:64532858-64532877 Msa0417370:intron 45.0%
GAAGGCAATGTTGATCAACG+AGG + chr3_2:64532900-64532919 Msa0417370:intron 45.0%
AGGCAATGTTGATCAACGAG+GGG + chr3_2:64532902-64532921 Msa0417370:intron 45.0%
TTAGCATGTCTGAGGAGCTA+TGG - chr3_2:64533214-64533233 None:intergenic 45.0%
ATAGCTCCTCAGACATGCTA+AGG + chr3_2:64533213-64533232 Msa0417370:intron 45.0%
TAGCTCCTCAGACATGCTAA+GGG + chr3_2:64533214-64533233 Msa0417370:intron 45.0%
!! AGATGATCTTTTGGGGGAAG+GGG + chr3_2:64533452-64533471 Msa0417370:intron 45.0%
TGTTGGACATTATCAGGCTC+TGG + chr3_2:64533559-64533578 Msa0417370:intron 45.0%
CATGTCGATCGTTCATTGGT+TGG + chr3_2:64533708-64533727 Msa0417370:intron 45.0%
!! CGTTCATTGGTTGGCTTTAG+TGG + chr3_2:64533717-64533736 Msa0417370:intron 45.0%
GAGACTTGATATGTGGTGAC+CGG + chr3_2:64534521-64534540 Msa0417370:intron 45.0%
GCCTGAAAATGTCACAGATC+AGG + chr3_2:64534797-64534816 Msa0417370:CDS 45.0%
! GTGGTGACAGATTAGGTTGT+GGG + chr3_2:64534884-64534903 Msa0417370:intron 45.0%
ATTATGACGAGTTCCCATCC+AGG + chr3_2:64534946-64534965 Msa0417370:CDS 45.0%
TTATGACGAGTTCCCATCCA+GGG + chr3_2:64534947-64534966 Msa0417370:CDS 45.0%
CAAAGTTGCTTACCCTGGAT+GGG - chr3_2:64534962-64534981 None:intergenic 45.0%
TCAAAGTTGCTTACCCTGGA+TGG - chr3_2:64534963-64534982 None:intergenic 45.0%
CCTGCCACACAAATGACATA+AGG - chr3_2:64535033-64535052 None:intergenic 45.0%
! CCTTATGTCATTTGTGTGGC+AGG + chr3_2:64535030-64535049 Msa0417370:intron 45.0%
GTGTGGCAGGATGTATTTGA+AGG + chr3_2:64535043-64535062 Msa0417370:intron 45.0%
!! ACATAATAAATTTAATTAAA+AGG - chr3_2:64533335-64533354 None:intergenic 5.0%
!! AGTATATATTTAATTATATA+CGG + chr3_2:64533426-64533445 Msa0417370:intron 5.0%
ATGGATGGAAGGAAGGAAGC+GGG - chr3_2:64529358-64529377 None:intergenic 50.0%
GATGGATGGAAGGAAGGAAG+CGG - chr3_2:64529359-64529378 None:intergenic 50.0%
CACATGGATGGATGGAAGGA+AGG - chr3_2:64529365-64529384 None:intergenic 50.0%
! GCATATTGATGGACCTGTGC+CGG + chr3_2:64530221-64530240 Msa0417370:CDS 50.0%
!! ACCTGTGCCGGCTAAGTTAT+TGG + chr3_2:64530233-64530252 Msa0417370:CDS 50.0%
TCCAATAACTTAGCCGGCAC+AGG - chr3_2:64530237-64530256 None:intergenic 50.0%
!! TGTGCCGGCTAAGTTATTGG+AGG + chr3_2:64530236-64530255 Msa0417370:CDS 50.0%
!! TCATCGTCCACTTTTGGTGC+AGG + chr3_2:64532058-64532077 Msa0417370:intron 50.0%
GTTGAAGTTTGACCAGCCCA+AGG - chr3_2:64532360-64532379 None:intergenic 50.0%
!! TGGGCTGGTCAAACTTCAAC+AGG + chr3_2:64532360-64532379 Msa0417370:CDS 50.0%
GTGTCCATGCTTCATAGCCA+AGG - chr3_2:64532661-64532680 None:intergenic 50.0%
CGTGACACGCCTAATCCTTT+AGG - chr3_2:64532683-64532702 None:intergenic 50.0%
! AGAGTTGGTCCGACACTTGT+CGG - chr3_2:64532710-64532729 None:intergenic 50.0%
! TTTGAGACACCGGTCAGAGT+TGG - chr3_2:64532725-64532744 None:intergenic 50.0%
TGCTTCGACACTCGTTGGAT+CGG + chr3_2:64532766-64532785 Msa0417370:intron 50.0%
GGCAATGTTGATCAACGAGG+GGG + chr3_2:64532903-64532922 Msa0417370:intron 50.0%
TGAACAGGGCACAGAGAGAA+AGG - chr3_2:64533282-64533301 None:intergenic 50.0%
TGTCATGTTCCCCTTCCCTT+TGG + chr3_2:64534005-64534024 Msa0417370:intron 50.0%
GTCATGTTCCCCTTCCCTTT+GGG + chr3_2:64534006-64534025 Msa0417370:intron 50.0%
CAATGGCATTACAGCAGACC+AGG + chr3_2:64534305-64534324 Msa0417370:CDS 50.0%
TCATCCTCGTGTTGCACAGA+GGG + chr3_2:64534764-64534783 Msa0417370:CDS 50.0%
!! GTGACATTTTCAGGCACTGC+TGG - chr3_2:64534792-64534811 None:intergenic 50.0%
! GGTGGTGACAGATTAGGTTG+TGG + chr3_2:64534883-64534902 Msa0417370:intron 50.0%
!! GCTTTTGGTGGTCAAGTCTG+AGG + chr3_2:64535123-64535142 Msa0417370:CDS 50.0%
! TGGAAGGAAGGAAGCGGGTT+CGG - chr3_2:64529353-64529372 None:intergenic 55.0%
GAGGAATGGGTGCTTCCAGA+TGG + chr3_2:64530255-64530274 Msa0417370:CDS 55.0%
ATGGCAGTGGAACTTTGCCG+AGG + chr3_2:64531310-64531329 Msa0417370:intron 55.0%
TGGCAGTGGAACTTTGCCGA+GGG + chr3_2:64531311-64531330 Msa0417370:intron 55.0%
TGTGAGGCTCCCAACCTTAG+AGG + chr3_2:64531356-64531375 Msa0417370:CDS 55.0%
CCTCTCTCCTGCACCAAAAG+TGG - chr3_2:64532068-64532087 None:intergenic 55.0%
!! CCACTTTTGGTGCAGGAGAG+AGG + chr3_2:64532065-64532084 Msa0417370:intron 55.0%
!! CAGGAGAGAGGTGTTGATGC+TGG + chr3_2:64532077-64532096 Msa0417370:intron 55.0%
TCACGGTGTCCGACAAGTGT+CGG + chr3_2:64532698-64532717 Msa0417370:intron 55.0%
! AGTGTCGGACCAACTCTGAC+CGG + chr3_2:64532713-64532732 Msa0417370:intron 55.0%
CGACGTGTCAATGTCGTGTC+AGG + chr3_2:64533178-64533197 Msa0417370:intron 55.0%
CTCCTCAGACATGCTAAGGG+TGG + chr3_2:64533217-64533236 Msa0417370:intron 55.0%
CTCCACCCTTAGCATGTCTG+AGG - chr3_2:64533222-64533241 None:intergenic 55.0%
CTCAGACATGCTAAGGGTGG+AGG + chr3_2:64533220-64533239 Msa0417370:intron 55.0%
GAGGATGAGCATTCTGCCGA+AGG - chr3_2:64534752-64534771 None:intergenic 55.0%
CTCATCCTCGTGTTGCACAG+AGG + chr3_2:64534763-64534782 Msa0417370:CDS 55.0%
CCACATTGCTCCCTCCATCA+TGG - chr3_2:64535244-64535263 None:intergenic 55.0%
! CCATGATGGAGGGAGCAATG+TGG + chr3_2:64535241-64535260 Msa0417370:three_prime_UTR 55.0%
! AAGGAAGGAAGCGGGTTCGG+CGG - chr3_2:64529350-64529369 None:intergenic 60.0%
TGACCAGCCCAAGGTCTGCA+AGG - chr3_2:64532351-64532370 None:intergenic 60.0%
GGTACCCTCTGTGCAACACG+AGG - chr3_2:64534771-64534790 None:intergenic 60.0%
CCATTCTCTGGCGCAGTCAC+AGG - chr3_2:64535071-64535090 None:intergenic 60.0%
CCTGTGACTGCGCCAGAGAA+TGG + chr3_2:64535068-64535087 Msa0417370:CDS 60.0%
GACTGCGCCAGAGAATGGAG+TGG + chr3_2:64535073-64535092 Msa0417370:CDS 60.0%
TCTGACTCAGGAGACGCCGC+TGG - chr3_2:64531674-64531693 None:intergenic 65.0%
AGCGGCGTCTCCTGAGTCAG+AGG + chr3_2:64531673-64531692 Msa0417370:CDS 65.0%
GGACCTTGCAGACCTTGGGC+TGG + chr3_2:64532345-64532364 Msa0417370:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 64529286 64535418 64529286 ID=Msa0417370;Name=Msa0417370
chr3_2 mRNA 64529286 64535418 64529286 ID=Msa0417370-mRNA-1;Parent=Msa0417370;Name=Msa0417370-mRNA-1;_AED=0.11;_eAED=0.11;_QI=250|1|1|1|0.93|0.87|16|232|451
chr3_2 exon 64529286 64529515 64529286 ID=Msa0417370-mRNA-1:exon:14322;Parent=Msa0417370-mRNA-1
chr3_2 exon 64529660 64529792 64529660 ID=Msa0417370-mRNA-1:exon:14323;Parent=Msa0417370-mRNA-1
chr3_2 exon 64530179 64530346 64530179 ID=Msa0417370-mRNA-1:exon:14324;Parent=Msa0417370-mRNA-1
chr3_2 exon 64530909 64530977 64530909 ID=Msa0417370-mRNA-1:exon:14325;Parent=Msa0417370-mRNA-1
chr3_2 exon 64531317 64531410 64531317 ID=Msa0417370-mRNA-1:exon:14326;Parent=Msa0417370-mRNA-1
chr3_2 exon 64531594 64531694 64531594 ID=Msa0417370-mRNA-1:exon:14327;Parent=Msa0417370-mRNA-1
chr3_2 exon 64531811 64531856 64531811 ID=Msa0417370-mRNA-1:exon:14328;Parent=Msa0417370-mRNA-1
chr3_2 exon 64531940 64531999 64531940 ID=Msa0417370-mRNA-1:exon:14329;Parent=Msa0417370-mRNA-1
chr3_2 exon 64532080 64532148 64532080 ID=Msa0417370-mRNA-1:exon:14330;Parent=Msa0417370-mRNA-1
chr3_2 exon 64532298 64532381 64532298 ID=Msa0417370-mRNA-1:exon:14331;Parent=Msa0417370-mRNA-1
chr3_2 exon 64532515 64532598 64532515 ID=Msa0417370-mRNA-1:exon:14332;Parent=Msa0417370-mRNA-1
chr3_2 exon 64533854 64533939 64533854 ID=Msa0417370-mRNA-1:exon:14333;Parent=Msa0417370-mRNA-1
chr3_2 exon 64534236 64534326 64534236 ID=Msa0417370-mRNA-1:exon:14334;Parent=Msa0417370-mRNA-1
chr3_2 exon 64534738 64534818 64534738 ID=Msa0417370-mRNA-1:exon:14335;Parent=Msa0417370-mRNA-1
chr3_2 exon 64534894 64534968 64534894 ID=Msa0417370-mRNA-1:exon:14336;Parent=Msa0417370-mRNA-1
chr3_2 exon 64535052 64535418 64535052 ID=Msa0417370-mRNA-1:exon:14337;Parent=Msa0417370-mRNA-1
chr3_2 five_prime_UTR 64529286 64529515 64529286 ID=Msa0417370-mRNA-1:five_prime_utr;Parent=Msa0417370-mRNA-1
chr3_2 five_prime_UTR 64529660 64529679 64529660 ID=Msa0417370-mRNA-1:five_prime_utr;Parent=Msa0417370-mRNA-1
chr3_2 CDS 64529680 64529792 64529680 ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1
chr3_2 CDS 64530179 64530346 64530179 ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1
chr3_2 CDS 64530909 64530977 64530909 ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1
chr3_2 CDS 64531317 64531410 64531317 ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1
chr3_2 CDS 64531594 64531694 64531594 ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1
chr3_2 CDS 64531811 64531856 64531811 ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1
chr3_2 CDS 64531940 64531999 64531940 ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1
chr3_2 CDS 64532080 64532148 64532080 ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1
chr3_2 CDS 64532298 64532381 64532298 ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1
chr3_2 CDS 64532515 64532598 64532515 ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1
chr3_2 CDS 64533854 64533939 64533854 ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1
chr3_2 CDS 64534236 64534326 64534236 ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1
chr3_2 CDS 64534738 64534818 64534738 ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1
chr3_2 CDS 64534894 64534968 64534894 ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1
chr3_2 CDS 64535052 64535186 64535052 ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1
chr3_2 three_prime_UTR 64535187 64535418 64535187 ID=Msa0417370-mRNA-1:three_prime_utr;Parent=Msa0417370-mRNA-1
Gene Sequence

>Msa0417370

ATGCCTGAGGTTAGGATCATTGCCAAGAATTTCATGGACATGGTGGCTTCAATGCCTGCCATCAAACTTGATAAACTCTACGAGAATGGATTCATCTGCGAAGCTATTCTCAGGTCTCTTCCGCCTCTTGCAAAGAAATATGTGTTACAGTTATTGCATATTGATGGACCTGTGCCGGCTAAGTTATTGGAGGAATGGGTGCTTCCAGATGGTCTATCAAAGCACAAAGTTGCCATTGATAGATTGGTTCAATTGAGAGTTTTTGTTGAAGCTCTTGACAGGAAGAACGAAAAAACTTACAAAGTTAATTCAACATATCAGAAAAGTCTCCAGAATCTTTTAGTACACGGTGGAACTTTGCCGAGGGAATCAATGCCTTCTAATATTACTGTGAGGCTCCCAACCTTAGAGGATCTTGAGACTTATGCTGTGGAACAATGGGAGTGTTTCTTGTTGCAACTTATAAGCCCAAGTCATGTTGACAAGACCTTAAACATAAGCTCTTCTTTGATGAAAATTTTCCAGCGGCGTCTCCTGAGTCAGAGAGACAGAGAAGCTCCAAAATTAACTGAGAGTGGCTTCCAGTTTTTGCTGATGGATACAAATGCACAACTTTGGTACATCATCAGGGAATATATCACTAATTCTGAGGAGAGAGGTGTTGATGCTGGTGACTTGATATCATTCATGCTGGAGCTTAGTTTTCATGTCATTGGGGAGGCATATAATATAAACACATTGACCGAATTTCAGAGGAACATAATTAAGGACCTTGCAGACCTTGGGCTGGTCAAACTTCAACAGGGCAGGAAAGAAAGTTGGTTTATACCAACAAAATTAGCAACAAACCTTTCAGTGAGCATGACTGAATCATCATCAAGAAAAGAGGGATTTGTTGTTGTGGAAACAAATTTTAGAGTTTATGCTTACTCGACTTCAAAATTACACTGTGAGATATTGCGGTTATTTTCAAGGGTAGAGTATCAACTTCCAAATCTTATTGTTGGAGCTATTACAAAAGAAAGCTTGTATAATGCTTTTGACAATGGCATTACAGCAGACCAGATAGTCAGTTTCCTTCGGCAGAATGCTCATCCTCGTGTTGCACAGAGGGTACCAGCAGTGCCTGAAAATGTCACAGATCAGATTAGGTTGTGGGAATCAGATCTAAACAGAGTTGAGATGACAGAAGCATATTATTATGACGAGTTCCCATCCAGGGATGTATTTGAAGGTGCCTGTGACTGCGCCAGAGAATGGAGTGGTTTATTATGGGAAGATTCAAAGAAGATGCTTTTGGTGGTCAAGTCTGAGGTTCATACTTACGTACGAGATTTTTTACGCCGCCAAAAGTAG

Protein sequence

>Msa0417370

MPEVRIIAKNFMDMVASMPAIKLDKLYENGFICEAILRSLPPLAKKYVLQLLHIDGPVPAKLLEEWVLPDGLSKHKVAIDRLVQLRVFVEALDRKNEKTYKVNSTYQKSLQNLLVHGGTLPRESMPSNITVRLPTLEDLETYAVEQWECFLLQLISPSHVDKTLNISSSLMKIFQRRLLSQRDREAPKLTESGFQFLLMDTNAQLWYIIREYITNSEERGVDAGDLISFMLELSFHVIGEAYNINTLTEFQRNIIKDLADLGLVKLQQGRKESWFIPTKLATNLSVSMTESSSRKEGFVVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFDNGITADQIVSFLRQNAHPRVAQRVPAVPENVTDQIRLWESDLNRVEMTEAYYYDEFPSRDVFEGACDCAREWSGLLWEDSKKMLLVVKSEVHTYVRDFLRRQK*