Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0417370 | XP_039687375.1 | 98.448 | 451 | 7 | 0 | 1 | 451 | 1 | 451 | 0.0 | 922 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0417370 | sp|Q680U9|TFB2_ARATH | 74.667 | 450 | 114 | 0 | 1 | 450 | 1 | 450 | 0.0 | 724 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0417370 | G7J329 | 98.230 | 452 | 7 | 1 | 1 | 451 | 1 | 452 | 0.0 | 917 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0417370 | Msa1340470 | 0.802940 | 4.418906e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0417370 | MtrunA17_Chr3g0114801 | 98.230 | 452 | 7 | 1 | 1 | 451 | 1 | 452 | 0.0 | 917 |
Msa0417370 | MtrunA17_Chr4g0047481 | 96.896 | 451 | 14 | 0 | 1 | 451 | 1 | 451 | 0.0 | 907 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0417370 | AT4G17020.1 | 74.667 | 450 | 114 | 0 | 1 | 450 | 1 | 450 | 0.0 | 724 |
Msa0417370 | AT4G17020.3 | 74.667 | 450 | 114 | 0 | 1 | 450 | 1 | 450 | 0.0 | 724 |
Msa0417370 | AT4G17020.2 | 74.667 | 450 | 114 | 0 | 1 | 450 | 1 | 450 | 0.0 | 723 |
Find 118 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAAGAAGAGCTTATGTTTA+AGG | 0.129241 | 3_2:-64531637 | None:intergenic |
AAGCCACTCTCAGTTAATTT+TGG | 0.189946 | 3_2:-64531824 | None:intergenic |
GAGAATGGAGTGGTTTATTA+TGG | 0.194734 | 3_2:+64535083 | Msa0417370:CDS |
TGTAGCTTTCTTACTACTTT+TGG | 0.229854 | 3_2:-64535177 | None:intergenic |
ATAATCAATTGAAGAGAAAT+TGG | 0.243117 | 3_2:+64529449 | Msa0417370:five_prime_UTR |
ATTACAAGCTTATATCATTA+AGG | 0.262366 | 3_2:+64535398 | Msa0417370:three_prime_UTR |
ACCTGTGCCGGCTAAGTTAT+TGG | 0.271234 | 3_2:+64530233 | Msa0417370:CDS |
CAAAGTTGCCATTGATAGAT+TGG | 0.301692 | 3_2:+64530290 | Msa0417370:CDS |
ATTTCAGAGGAACATAATTA+AGG | 0.312303 | 3_2:+64532324 | Msa0417370:CDS |
ACACATTCTGATGCATCTTA+TGG | 0.322058 | 3_2:+64535197 | Msa0417370:three_prime_UTR |
CCACTACAATCTTGTTAATA+AGG | 0.326913 | 3_2:+64529494 | Msa0417370:five_prime_UTR |
GATCATTGCCAAGAATTTCA+TGG | 0.333040 | 3_2:+64529694 | Msa0417370:CDS |
CACCATGTCCATGAAATTCT+TGG | 0.335342 | 3_2:-64529702 | None:intergenic |
CAACTTCCAAATCTTATTGT+TGG | 0.350456 | 3_2:+64534246 | Msa0417370:CDS |
AATTATGTTCCTCTGAAATT+CGG | 0.351671 | 3_2:-64532320 | None:intergenic |
AGATTCAAAGAAGATGCTTT+TGG | 0.356097 | 3_2:+64535108 | Msa0417370:CDS |
ATAGCTCCAACAATAAGATT+TGG | 0.356315 | 3_2:-64534252 | None:intergenic |
CACAACTTTGGTACATCATC+AGG | 0.365045 | 3_2:+64531956 | Msa0417370:CDS |
GTAGAGTTTATCAAGTTTGA+TGG | 0.368766 | 3_2:-64529738 | None:intergenic |
TGGAAGGAAGGAAGCGGGTT+CGG | 0.376833 | 3_2:-64529350 | None:intergenic |
TCATGGTTATCATTGCATAT+TGG | 0.378871 | 3_2:-64535224 | None:intergenic |
TGTGAGGCTCCCAACCTTAG+AGG | 0.379390 | 3_2:+64531356 | Msa0417370:CDS |
GGCTAAGTTATTGGAGGAAT+GGG | 0.394224 | 3_2:+64530242 | Msa0417370:CDS |
TTACAGTTATTGCATATTGA+TGG | 0.396001 | 3_2:+64530210 | Msa0417370:CDS |
TGGGCTGGTCAAACTTCAAC+AGG | 0.402831 | 3_2:+64532360 | Msa0417370:CDS |
ATAAGTCTCAAGATCCTCTA+AGG | 0.406525 | 3_2:-64531370 | None:intergenic |
AGAATGGAGTGGTTTATTAT+GGG | 0.410978 | 3_2:+64535084 | Msa0417370:CDS |
TTGTGCTTTGATAGACCATC+TGG | 0.426688 | 3_2:-64530270 | None:intergenic |
ACCCGTGTACTAAAAGATTC+TGG | 0.429826 | 3_2:-64530957 | None:intergenic |
AAATCAAAATGCCTGAGGTT+AGG | 0.443637 | 3_2:+64529672 | Msa0417370:exon |
GCCTGAAAATGTCACAGATC+AGG | 0.448319 | 3_2:+64534797 | Msa0417370:CDS |
CCTGTGACTGCGCCAGAGAA+TGG | 0.448807 | 3_2:+64535068 | Msa0417370:CDS |
CAAAAGAAAAGAAGGGAAGC+GGG | 0.453713 | 3_2:+64529280 | None:intergenic |
TTAAGGACCTTGCAGACCTT+GGG | 0.454174 | 3_2:+64532341 | Msa0417370:CDS |
CTTGATAAACTCTACGAGAA+TGG | 0.454631 | 3_2:+64529746 | Msa0417370:CDS |
ATTAAGGACCTTGCAGACCT+TGG | 0.455377 | 3_2:+64532340 | Msa0417370:CDS |
AAATAAATCAAAAGAAAAGA+AGG | 0.460015 | 3_2:+64529272 | None:intergenic |
CGGCTAAGTTATTGGAGGAA+TGG | 0.470454 | 3_2:+64530241 | Msa0417370:CDS |
TCCAATAACTTAGCCGGCAC+AGG | 0.471035 | 3_2:-64530234 | None:intergenic |
TCAAAAGAAAAGAAGGGAAG+CGG | 0.476816 | 3_2:+64529279 | None:intergenic |
TGCAGATAGTCAGTTTCCTT+CGG | 0.477880 | 3_2:+64534733 | Msa0417370:intron |
AGCCTCACAGTAATATTAGA+AGG | 0.477881 | 3_2:-64531342 | None:intergenic |
TCAAAGTTGCTTACCCTGGA+TGG | 0.478380 | 3_2:-64534960 | None:intergenic |
AAGGTCTTGTCAACATGACT+TGG | 0.480094 | 3_2:-64531618 | None:intergenic |
TATAGGGCAGGAAAGAAAGT+TGG | 0.482264 | 3_2:+64532510 | Msa0417370:intron |
GTCTCAAGATCCTCTAAGGT+TGG | 0.483810 | 3_2:-64531366 | None:intergenic |
TAATAAACCACTCCATTCTC+TGG | 0.489013 | 3_2:-64535080 | None:intergenic |
ATCTCTAATAAGTTGATAGC+AGG | 0.492285 | 3_2:+64529407 | Msa0417370:five_prime_UTR |
TGGATACAAATGCACAACTT+TGG | 0.500692 | 3_2:+64531944 | Msa0417370:CDS |
TCTCAAGATCCTCTAAGGTT+GGG | 0.504105 | 3_2:-64531365 | None:intergenic |
TGAATCATCATCAAGAAAAG+AGG | 0.506736 | 3_2:+64532577 | Msa0417370:CDS |
AGTTTATCAAGTTTGATGGC+AGG | 0.511969 | 3_2:-64529734 | None:intergenic |
CAATTGAACCAATCTATCAA+TGG | 0.514654 | 3_2:-64530298 | None:intergenic |
GACTTATGCTGTGGAACAAT+GGG | 0.515674 | 3_2:+64531386 | Msa0417370:CDS |
GTAAACAGAACCTCTGACTC+AGG | 0.517111 | 3_2:-64531683 | None:intergenic |
TCATCTGCGAAGCTATTCTC+AGG | 0.522090 | 3_2:+64529771 | Msa0417370:CDS |
CATTCCTCCAATAACTTAGC+CGG | 0.523734 | 3_2:-64530240 | None:intergenic |
AATAAATCAAAAGAAAAGAA+GGG | 0.530742 | 3_2:+64529273 | None:intergenic |
TGCCAAGAATTTCATGGACA+TGG | 0.531687 | 3_2:+64529700 | Msa0417370:CDS |
GTGGTGACAGATTAGGTTGT+GGG | 0.535695 | 3_2:+64534884 | Msa0417370:intron |
GGACCTTGCAGACCTTGGGC+TGG | 0.536902 | 3_2:+64532345 | Msa0417370:CDS |
CAGGAGAGAGGTGTTGATGC+TGG | 0.539060 | 3_2:+64532077 | Msa0417370:intron |
GTGTGGCAGGATGTATTTGA+AGG | 0.539271 | 3_2:+64535043 | Msa0417370:intron |
TCTGACTCAGGAGACGCCGC+TGG | 0.540398 | 3_2:-64531671 | None:intergenic |
AGGTCTTGTCAACATGACTT+GGG | 0.547217 | 3_2:-64531617 | None:intergenic |
CAATGGCATTACAGCAGACC+AGG | 0.547595 | 3_2:+64534305 | Msa0417370:CDS |
CCACATTGCTCCCTCCATCA+TGG | 0.549036 | 3_2:-64535241 | None:intergenic |
CCATTCTCTGGCGCAGTCAC+AGG | 0.549704 | 3_2:-64535068 | None:intergenic |
TACTACTACACATGGATGGA+TGG | 0.550277 | 3_2:-64529370 | None:intergenic |
CACATGGATGGATGGAAGGA+AGG | 0.551191 | 3_2:-64529362 | None:intergenic |
ATTATGACGAGTTCCCATCC+AGG | 0.551997 | 3_2:+64534946 | Msa0417370:CDS |
AACACATATTTCTTTGCAAG+AGG | 0.556398 | 3_2:-64530189 | None:intergenic |
CCTTATTAACAAGATTGTAG+TGG | 0.558275 | 3_2:-64529494 | None:intergenic |
GATGGATGGAAGGAAGGAAG+CGG | 0.562789 | 3_2:-64529356 | None:intergenic |
AGACTTATGCTGTGGAACAA+TGG | 0.563224 | 3_2:+64531385 | Msa0417370:CDS |
TCTAATAAGTTGATAGCAGG+TGG | 0.566929 | 3_2:+64529410 | Msa0417370:five_prime_UTR |
AATTACACTGTGAGATATTG+CGG | 0.567848 | 3_2:+64533906 | Msa0417370:CDS |
CAAAGTTGCTTACCCTGGAT+GGG | 0.570298 | 3_2:-64534959 | None:intergenic |
ATTAACAAGATTGTAGTGGA+TGG | 0.571304 | 3_2:-64529490 | None:intergenic |
ATTCAGTCATGCTCACTGAA+AGG | 0.573028 | 3_2:-64532559 | None:intergenic |
TTAGAAGGCATTGATTCCCT+CGG | 0.574898 | 3_2:-64531327 | None:intergenic |
TGCAATGATAACCATGATGG+AGG | 0.576858 | 3_2:+64535230 | Msa0417370:three_prime_UTR |
TCATCCTCGTGTTGCACAGA+GGG | 0.581937 | 3_2:+64534764 | Msa0417370:CDS |
GCTCCAAAATTAACTGAGAG+TGG | 0.582979 | 3_2:+64531821 | Msa0417370:CDS |
ATGGATGGAAGGAAGGAAGC+GGG | 0.583354 | 3_2:-64529355 | None:intergenic |
TGACTTGATATCATTCATGC+TGG | 0.584712 | 3_2:+64532100 | Msa0417370:CDS |
TTGGCAATGATCCTAACCTC+AGG | 0.587350 | 3_2:-64529683 | None:intergenic |
GGTGGTGACAGATTAGGTTG+TGG | 0.588257 | 3_2:+64534883 | Msa0417370:intron |
GCATATTGATGGACCTGTGC+CGG | 0.588398 | 3_2:+64530221 | Msa0417370:CDS |
AGCGGCGTCTCCTGAGTCAG+AGG | 0.589108 | 3_2:+64531673 | Msa0417370:CDS |
AAGGAAGGAAGCGGGTTCGG+CGG | 0.591782 | 3_2:-64529347 | None:intergenic |
TGATTACTACTACACATGGA+TGG | 0.594138 | 3_2:-64529374 | None:intergenic |
GAGGAATGGGTGCTTCCAGA+TGG | 0.595776 | 3_2:+64530255 | Msa0417370:CDS |
GAGGATGAGCATTCTGCCGA+AGG | 0.597208 | 3_2:-64534749 | None:intergenic |
GTTGAAGTTTGACCAGCCCA+AGG | 0.597505 | 3_2:-64532357 | None:intergenic |
ATATGCAATGATAACCATGA+TGG | 0.599153 | 3_2:+64535227 | Msa0417370:three_prime_UTR |
CAAGAATTTCATGGACATGG+TGG | 0.599325 | 3_2:+64529703 | Msa0417370:CDS |
TTATGACGAGTTCCCATCCA+GGG | 0.606538 | 3_2:+64534947 | Msa0417370:CDS |
TGTGCCGGCTAAGTTATTGG+AGG | 0.608812 | 3_2:+64530236 | Msa0417370:CDS |
ACTACACATGGATGGATGGA+AGG | 0.611856 | 3_2:-64529366 | None:intergenic |
TGACCAGCCCAAGGTCTGCA+AGG | 0.612502 | 3_2:-64532348 | None:intergenic |
ACATATTTCTTTGCAAGAGG+CGG | 0.617514 | 3_2:-64530186 | None:intergenic |
ACACATTGACCGAATTTCAG+AGG | 0.620159 | 3_2:+64532311 | Msa0417370:CDS |
AAATTGATTACTACTACACA+TGG | 0.626945 | 3_2:-64529378 | None:intergenic |
GGAATATATCACTAATTCTG+AGG | 0.632294 | 3_2:+64531978 | Msa0417370:CDS |
AAAAGAAAAGAAGGGAAGCG+GGG | 0.635078 | 3_2:+64529281 | None:intergenic |
GGATCTTGAGACTTATGCTG+TGG | 0.646865 | 3_2:+64531377 | Msa0417370:CDS |
GCAATGATAACCATGATGGA+GGG | 0.649397 | 3_2:+64535231 | Msa0417370:three_prime_UTR |
TGGCAGTGGAACTTTGCCGA+GGG | 0.654665 | 3_2:+64531311 | Msa0417370:intron |
ATGGCAGTGGAACTTTGCCG+AGG | 0.657791 | 3_2:+64531310 | Msa0417370:intron |
ACAACTTTGGTACATCATCA+GGG | 0.674313 | 3_2:+64531957 | Msa0417370:CDS |
CTCATCCTCGTGTTGCACAG+AGG | 0.680297 | 3_2:+64534763 | Msa0417370:CDS |
AAACGAAATCAAAATGCCTG+AGG | 0.682481 | 3_2:+64529667 | Msa0417370:exon |
GGTACCCTCTGTGCAACACG+AGG | 0.694512 | 3_2:-64534768 | None:intergenic |
TGCCTTCTAATATTACTGTG+AGG | 0.698083 | 3_2:+64531340 | Msa0417370:CDS |
TTATGCTGTGGAACAATGGG+AGG | 0.705086 | 3_2:+64531389 | Msa0417370:CDS |
CCATGATGGAGGGAGCAATG+TGG | 0.730856 | 3_2:+64535241 | Msa0417370:three_prime_UTR |
GACTGCGCCAGAGAATGGAG+TGG | 0.741961 | 3_2:+64535073 | Msa0417370:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GAATAATATACATAATAAAA+AGG | - | chr3_2:64530770-64530789 | None:intergenic | 10.0% |
!!! | TTTTTTTTTTACAACTTTAT+AGG | + | chr3_2:64532493-64532512 | Msa0417370:intron | 10.0% |
!!! | TTTTTTTTTACAACTTTATA+GGG | + | chr3_2:64532494-64532513 | Msa0417370:intron | 10.0% |
!! | ATTAATAAATATAAATGTAG+CGG | + | chr3_2:64533121-64533140 | Msa0417370:intron | 10.0% |
!!! | TAATTTTACTTTTTAAATTG+TGG | + | chr3_2:64534351-64534370 | Msa0417370:intron | 10.0% |
!!! | ATTAAAAGATTATAATTTTG+CGG | + | chr3_2:64535368-64535387 | Msa0417370:three_prime_UTR | 10.0% |
!! | ATTAAGACAAATTATTAAAG+TGG | - | chr3_2:64531498-64531517 | None:intergenic | 15.0% |
!! | TTAAGTTTAATAGAAAGTTT+AGG | + | chr3_2:64532629-64532648 | Msa0417370:intron | 15.0% |
!! | TAAGTTTAATAGAAAGTTTA+GGG | + | chr3_2:64532630-64532649 | Msa0417370:intron | 15.0% |
!! | AATGCTAATGTAAAAAATAT+AGG | - | chr3_2:64533156-64533175 | None:intergenic | 15.0% |
!! | AAATTTAATTAAAAGGAAAG+AGG | - | chr3_2:64533328-64533347 | None:intergenic | 15.0% |
!!! | AATTTTGTTCATATGTATAT+AGG | + | chr3_2:64533403-64533422 | Msa0417370:intron | 15.0% |
!!! | TCATTCTATTTAATTTTTTC+AGG | + | chr3_2:64533832-64533851 | Msa0417370:intron | 15.0% |
!!! | CATTCTATTTAATTTTTTCA+GGG | + | chr3_2:64533833-64533852 | Msa0417370:intron | 15.0% |
!!! | ACATACAATAATATTTTTGA+GGG | - | chr3_2:64534210-64534229 | None:intergenic | 15.0% |
!!! | TACATACAATAATATTTTTG+AGG | - | chr3_2:64534211-64534230 | None:intergenic | 15.0% |
!! | TTAAGTTAAAAACATCATTA+AGG | + | chr3_2:64534600-64534619 | Msa0417370:intron | 15.0% |
!! | ATTTCTGATATTTAGTATTA+TGG | + | chr3_2:64534862-64534881 | Msa0417370:intron | 15.0% |
!! | ATAATCAATTGAAGAGAAAT+TGG | + | chr3_2:64529449-64529468 | Msa0417370:five_prime_UTR | 20.0% |
!! | TTTGAGAGAAATCATAAAAT+GGG | + | chr3_2:64530081-64530100 | Msa0417370:intron | 20.0% |
!! | CATACAAATCATAAAATGTT+AGG | + | chr3_2:64530157-64530176 | Msa0417370:intron | 20.0% |
!!! | ATTTTGTTTCAAATGACAAT+TGG | + | chr3_2:64530446-64530465 | Msa0417370:intron | 20.0% |
!!! | TGTATTCTAAAAGAAACAAA+GGG | - | chr3_2:64530632-64530651 | None:intergenic | 20.0% |
!!! | ATGTATTCTAAAAGAAACAA+AGG | - | chr3_2:64530633-64530652 | None:intergenic | 20.0% |
!! | GTGAAAAAAAATACTAAACT+GGG | - | chr3_2:64530879-64530898 | None:intergenic | 20.0% |
!! | CATAAAATTGTTAATATGAG+TGG | + | chr3_2:64531059-64531078 | Msa0417370:intron | 20.0% |
!!! | TTCATATGAATTTTGAATTC+CGG | - | chr3_2:64531192-64531211 | None:intergenic | 20.0% |
!! | ATTAAATTGCAGTTACAAAA+GGG | - | chr3_2:64532242-64532261 | None:intergenic | 20.0% |
!! | ATATTATATGCCTAATCATT+GGG | - | chr3_2:64532289-64532308 | None:intergenic | 20.0% |
!! | TATATTATATGCCTAATCAT+TGG | - | chr3_2:64532290-64532309 | None:intergenic | 20.0% |
!! | AAAACAAATCAATTGTGAAA+CGG | - | chr3_2:64532611-64532630 | None:intergenic | 20.0% |
!! | AAGCAAAGAAAAAAAAGAAT+GGG | - | chr3_2:64532848-64532867 | None:intergenic | 20.0% |
!!! | TAATCTTTTTTGTTAGAAGA+TGG | + | chr3_2:64532956-64532975 | Msa0417370:intron | 20.0% |
!! | ATTATGTCTTCAAAATGAAA+AGG | + | chr3_2:64533348-64533367 | Msa0417370:intron | 20.0% |
!! | TATAAGTACAAGATAAATTG+AGG | - | chr3_2:64534097-64534116 | None:intergenic | 20.0% |
!! | TTATAGCTGAATTAATAGTT+TGG | - | chr3_2:64534122-64534141 | None:intergenic | 20.0% |
!! | TTCACCAAAATATTATTGTT+TGG | + | chr3_2:64534159-64534178 | Msa0417370:intron | 20.0% |
!!! | AACACCAAACAATAATATTT+TGG | - | chr3_2:64534166-64534185 | None:intergenic | 20.0% |
!! | AAATATTATTGTATGTATGC+AGG | + | chr3_2:64534214-64534233 | Msa0417370:intron | 20.0% |
!! | AATATTATTGTATGTATGCA+GGG | + | chr3_2:64534215-64534234 | Msa0417370:intron | 20.0% |
!! | TATAATTTCTAATACTTACC+TGG | - | chr3_2:64534326-64534345 | None:intergenic | 20.0% |
!! | GAAACATGAAAAAATAATAG+TGG | - | chr3_2:64535282-64535301 | None:intergenic | 20.0% |
!!! | ATTTTGTTCCTTTTAGAAAA+AGG | + | chr3_2:64535306-64535325 | Msa0417370:three_prime_UTR | 20.0% |
!!! | CAATAAAACCTTTTTCTAAA+AGG | - | chr3_2:64535317-64535336 | None:intergenic | 20.0% |
! | AAATTGATTACTACTACACA+TGG | - | chr3_2:64529381-64529400 | None:intergenic | 25.0% |
!!! | TCGTTTTTCTAAACAAATGA+AGG | - | chr3_2:64529648-64529667 | None:intergenic | 25.0% |
! | GTTTGAGAGAAATCATAAAA+TGG | + | chr3_2:64530080-64530099 | Msa0417370:intron | 25.0% |
! | ATTTGTATGCATTAAAACCA+CGG | - | chr3_2:64530146-64530165 | None:intergenic | 25.0% |
! | TTACAGTTATTGCATATTGA+TGG | + | chr3_2:64530210-64530229 | Msa0417370:CDS | 25.0% |
!!! | AACAAGGTTTTATCACAAAA+AGG | - | chr3_2:64530536-64530555 | None:intergenic | 25.0% |
! | AAAGAGATTTAGCAAAAATC+AGG | - | chr3_2:64530602-64530621 | None:intergenic | 25.0% |
!! | TATTCTAAAAGAAACAAAGG+GGG | - | chr3_2:64530630-64530649 | None:intergenic | 25.0% |
!! | GTATTCTAAAAGAAACAAAG+GGG | - | chr3_2:64530631-64530650 | None:intergenic | 25.0% |
! | ACTTAAAGCAAATTCAAGAA+CGG | - | chr3_2:64530704-64530723 | None:intergenic | 25.0% |
!! | GAATTTGCTTTAAGTTAATG+AGG | + | chr3_2:64530709-64530728 | Msa0417370:intron | 25.0% |
! | GGTGAAAAAAAATACTAAAC+TGG | - | chr3_2:64530880-64530899 | None:intergenic | 25.0% |
!! | TTGTCTTCTTTTTCTATTCA+TGG | + | chr3_2:64530995-64531014 | Msa0417370:intron | 25.0% |
! | TTAACTCATAATACGTGATA+TGG | - | chr3_2:64531100-64531119 | None:intergenic | 25.0% |
!!! | ATTTTGGTCCTATAATTTCA+AGG | - | chr3_2:64531152-64531171 | None:intergenic | 25.0% |
!! | ATGACTATTATACAGCATTT+TGG | - | chr3_2:64531168-64531187 | None:intergenic | 25.0% |
!! | ACAACTTGAATGTTTGATTT+AGG | + | chr3_2:64531259-64531278 | Msa0417370:intron | 25.0% |
! | AAAAGTGGAATCAAAAGAAA+AGG | - | chr3_2:64531422-64531441 | None:intergenic | 25.0% |
! | TGTACAGATTAAACAAAAAG+TGG | - | chr3_2:64531437-64531456 | None:intergenic | 25.0% |
! | CATTAAATTGCAGTTACAAA+AGG | - | chr3_2:64532243-64532262 | None:intergenic | 25.0% |
! | TATTATATGCCTAATCATTG+GGG | - | chr3_2:64532288-64532307 | None:intergenic | 25.0% |
!!! | AATTATGTTCCTCTGAAATT+CGG | - | chr3_2:64532323-64532342 | None:intergenic | 25.0% |
! | ATTTCAGAGGAACATAATTA+AGG | + | chr3_2:64532324-64532343 | Msa0417370:CDS | 25.0% |
!!! | AAAACAAATTTTTGAGACAC+CGG | - | chr3_2:64532735-64532754 | None:intergenic | 25.0% |
! | GAAGCAAAGAAAAAAAAGAA+TGG | - | chr3_2:64532849-64532868 | None:intergenic | 25.0% |
! | ACATCATTAAAAATGTGTGA+AGG | + | chr3_2:64532882-64532901 | Msa0417370:intron | 25.0% |
! | TGTTAGAAGATGGATAAAAA+AGG | + | chr3_2:64532966-64532985 | Msa0417370:intron | 25.0% |
!!! | AATACTATCCAATCTTGTTT+TGG | + | chr3_2:64532992-64533011 | Msa0417370:intron | 25.0% |
! | AAAAAGTTCCAAAACAAGAT+TGG | - | chr3_2:64533003-64533022 | None:intergenic | 25.0% |
! | AAAAGGAAAGAGGAAATATA+AGG | - | chr3_2:64533318-64533337 | None:intergenic | 25.0% |
!!! | AACAAACATTAGTTTTCTGT+AGG | - | chr3_2:64533608-64533627 | None:intergenic | 25.0% |
! | TACAGAAAACTAATGTTTGT+TGG | + | chr3_2:64533607-64533626 | Msa0417370:intron | 25.0% |
!!! | TTCAGCTATAAAGCTTTAAA+CGG | + | chr3_2:64534131-64534150 | Msa0417370:intron | 25.0% |
!! | TTGTATAATGCTTTTGACAA+TGG | + | chr3_2:64534288-64534307 | Msa0417370:CDS | 25.0% |
!! | TTCAAATTTGACTTCTGTAA+AGG | + | chr3_2:64534433-64534452 | Msa0417370:intron | 25.0% |
! | TCTGATATTTAGTATTATGG+TGG | + | chr3_2:64534865-64534884 | Msa0417370:intron | 25.0% |
AAGAAAAAGAAAACTCTCAC+TGG | + | chr3_2:64529317-64529336 | Msa0417370:five_prime_UTR | 30.0% | |
AGAAAAAGAAAACTCTCACT+GGG | + | chr3_2:64529318-64529337 | Msa0417370:five_prime_UTR | 30.0% | |
!! | ATCTCTAATAAGTTGATAGC+AGG | + | chr3_2:64529407-64529426 | Msa0417370:five_prime_UTR | 30.0% |
! | ATTAACAAGATTGTAGTGGA+TGG | - | chr3_2:64529493-64529512 | None:intergenic | 30.0% |
CCTTATTAACAAGATTGTAG+TGG | - | chr3_2:64529497-64529516 | None:intergenic | 30.0% | |
CCACTACAATCTTGTTAATA+AGG | + | chr3_2:64529494-64529513 | Msa0417370:five_prime_UTR | 30.0% | |
GTAGAGTTTATCAAGTTTGA+TGG | - | chr3_2:64529741-64529760 | None:intergenic | 30.0% | |
TTATCGAAACATGACCTTAA+TGG | - | chr3_2:64529832-64529851 | None:intergenic | 30.0% | |
GTACTTAAACAAGTACTTGT+GGG | - | chr3_2:64530051-64530070 | None:intergenic | 30.0% | |
AGTACTTAAACAAGTACTTG+TGG | - | chr3_2:64530052-64530071 | None:intergenic | 30.0% | |
AGTACTTGTTTAAGTACTTG+TGG | + | chr3_2:64530054-64530073 | Msa0417370:intron | 30.0% | |
GTACTTGTTTAAGTACTTGT+GGG | + | chr3_2:64530055-64530074 | Msa0417370:intron | 30.0% | |
AACACATATTTCTTTGCAAG+AGG | - | chr3_2:64530192-64530211 | None:intergenic | 30.0% | |
CAATTGAACCAATCTATCAA+TGG | - | chr3_2:64530301-64530320 | None:intergenic | 30.0% | |
CAGTATTTGATGTCACAATT+TGG | + | chr3_2:64530734-64530753 | Msa0417370:intron | 30.0% | |
ACTAAACTGGGATAAAACAA+GGG | - | chr3_2:64530867-64530886 | None:intergenic | 30.0% | |
TACTAAACTGGGATAAAACA+AGG | - | chr3_2:64530868-64530887 | None:intergenic | 30.0% | |
!!! | ATTTTTTTTCACCTTCTTGC+AGG | + | chr3_2:64530887-64530906 | Msa0417370:intron | 30.0% |
ATGTACCTTAATAGCAACAA+GGG | - | chr3_2:64531042-64531061 | None:intergenic | 30.0% | |
TATGTACCTTAATAGCAACA+AGG | - | chr3_2:64531043-64531062 | None:intergenic | 30.0% | |
TCATAATACGTGATATGGAA+GGG | - | chr3_2:64531095-64531114 | None:intergenic | 30.0% | |
TAACAAACCTATATAGACGA+TGG | + | chr3_2:64531117-64531136 | Msa0417370:intron | 30.0% | |
TGGTTACTCCTTGAAATTAT+AGG | + | chr3_2:64531141-64531160 | Msa0417370:intron | 30.0% | |
ATGCTGTATAATAGTCATTC+CGG | + | chr3_2:64531170-64531189 | Msa0417370:intron | 30.0% | |
! | ACTTGAATGTTTGATTTAGG+TGG | + | chr3_2:64531262-64531281 | Msa0417370:intron | 30.0% |
AACAAAGTCATTGGAGATTT+AGG | - | chr3_2:64531560-64531579 | None:intergenic | 30.0% | |
CAAAGAAGAGCTTATGTTTA+AGG | - | chr3_2:64531640-64531659 | None:intergenic | 30.0% | |
! | CTTTGATGAAAATTTTCCAG+CGG | + | chr3_2:64531655-64531674 | Msa0417370:CDS | 30.0% |
TGCATTACATTAAGTTCAAG+TGG | - | chr3_2:64531883-64531902 | None:intergenic | 30.0% | |
GGAATATATCACTAATTCTG+AGG | + | chr3_2:64531978-64531997 | Msa0417370:CDS | 30.0% | |
ATAGCAGAAACATATAGAGA+AGG | - | chr3_2:64532020-64532039 | None:intergenic | 30.0% | |
!! | AGCTTAGTTTTCATGTCATT+GGG | + | chr3_2:64532123-64532142 | Msa0417370:CDS | 30.0% |
!!! | TGATTTTTTCCCCAATGATT+AGG | + | chr3_2:64532276-64532295 | Msa0417370:intron | 30.0% |
AGATGCAGAATGATTTAACT+TGG | + | chr3_2:64532428-64532447 | Msa0417370:intron | 30.0% | |
! | TTTTTACAACTTTATAGGGC+AGG | + | chr3_2:64532498-64532517 | Msa0417370:intron | 30.0% |
!!! | AGGTTTGTTGCTAATTTTGT+TGG | - | chr3_2:64532542-64532561 | None:intergenic | 30.0% |
TGAATCATCATCAAGAAAAG+AGG | + | chr3_2:64532577-64532596 | Msa0417370:CDS | 30.0% | |
TATGAGTATCATATAGGTGT+CGG | - | chr3_2:64532795-64532814 | None:intergenic | 30.0% | |
GTGTTGTATGAGTATCATAT+AGG | - | chr3_2:64532801-64532820 | None:intergenic | 30.0% | |
! | ACATTTTTAATGATGTGCCA+AGG | - | chr3_2:64532878-64532897 | None:intergenic | 30.0% |
AAATATAAATGTAGCGGTGT+CGG | + | chr3_2:64533127-64533146 | Msa0417370:intron | 30.0% | |
! | ATACGGTTTAGATGATCTTT+TGG | + | chr3_2:64533443-64533462 | Msa0417370:intron | 30.0% |
! | TACGGTTTAGATGATCTTTT+GGG | + | chr3_2:64533444-64533463 | Msa0417370:intron | 30.0% |
ATATGTATGGAAGTTTCTGT+TGG | + | chr3_2:64533542-64533561 | Msa0417370:intron | 30.0% | |
AATTACACTGTGAGATATTG+CGG | + | chr3_2:64533906-64533925 | Msa0417370:CDS | 30.0% | |
!! | AGATATTGCGGTTATTTTCA+AGG | + | chr3_2:64533918-64533937 | Msa0417370:CDS | 30.0% |
ACAGCATTGCAGAAAATATT+TGG | - | chr3_2:64533951-64533970 | None:intergenic | 30.0% | |
CTTCCTATGGAAATTTAAAC+TGG | + | chr3_2:64534037-64534056 | Msa0417370:intron | 30.0% | |
CTTCCAGTTTAAATTTCCAT+AGG | - | chr3_2:64534043-64534062 | None:intergenic | 30.0% | |
!!! | AAACTGGAAGTTGTTTTTCA+TGG | + | chr3_2:64534053-64534072 | Msa0417370:intron | 30.0% |
!!! | GAAGTTGTTTTTCATGGAAT+AGG | + | chr3_2:64534059-64534078 | Msa0417370:intron | 30.0% |
CAACTTCCAAATCTTATTGT+TGG | + | chr3_2:64534246-64534265 | Msa0417370:CDS | 30.0% | |
ATAGCTCCAACAATAAGATT+TGG | - | chr3_2:64534255-64534274 | None:intergenic | 30.0% | |
TTCTTCAAATTTGACTCCTT+CGG | - | chr3_2:64534480-64534499 | None:intergenic | 30.0% | |
! | TCAATTTGAGACTTGATATG+TGG | + | chr3_2:64534514-64534533 | Msa0417370:intron | 30.0% |
TTCAAATGAAGAATTGAAGC+CGG | - | chr3_2:64534543-64534562 | None:intergenic | 30.0% | |
AGAATGGAGTGGTTTATTAT+GGG | + | chr3_2:64535084-64535103 | Msa0417370:CDS | 30.0% | |
! | AGATTCAAAGAAGATGCTTT+TGG | + | chr3_2:64535108-64535127 | Msa0417370:CDS | 30.0% |
! | TGTAGCTTTCTTACTACTTT+TGG | - | chr3_2:64535180-64535199 | None:intergenic | 30.0% |
TCATGGTTATCATTGCATAT+TGG | - | chr3_2:64535227-64535246 | None:intergenic | 30.0% | |
ATATGCAATGATAACCATGA+TGG | + | chr3_2:64535227-64535246 | Msa0417370:three_prime_UTR | 30.0% | |
GAAAAAGAAAACTCTCACTG+GGG | + | chr3_2:64529319-64529338 | Msa0417370:five_prime_UTR | 35.0% | |
TGATTACTACTACACATGGA+TGG | - | chr3_2:64529377-64529396 | None:intergenic | 35.0% | |
!! | TCTAATAAGTTGATAGCAGG+TGG | + | chr3_2:64529410-64529429 | Msa0417370:five_prime_UTR | 35.0% |
GGGAGAGTTACTAAAATTGA+AGG | - | chr3_2:64529537-64529556 | None:intergenic | 35.0% | |
!! | TCAATTTTAGTAACTCTCCC+TGG | + | chr3_2:64529537-64529556 | Msa0417370:intron | 35.0% |
!! | CAATTTTAGTAACTCTCCCT+GGG | + | chr3_2:64529538-64529557 | Msa0417370:intron | 35.0% |
TATGAGCAAAAAGAATCCCA+GGG | - | chr3_2:64529557-64529576 | None:intergenic | 35.0% | |
ATATGAGCAAAAAGAATCCC+AGG | - | chr3_2:64529558-64529577 | None:intergenic | 35.0% | |
AAACGAAATCAAAATGCCTG+AGG | + | chr3_2:64529667-64529686 | Msa0417370:exon | 35.0% | |
AAATCAAAATGCCTGAGGTT+AGG | + | chr3_2:64529672-64529691 | Msa0417370:exon | 35.0% | |
GATCATTGCCAAGAATTTCA+TGG | + | chr3_2:64529694-64529713 | Msa0417370:CDS | 35.0% | |
! | AGTTTATCAAGTTTGATGGC+AGG | - | chr3_2:64529737-64529756 | None:intergenic | 35.0% |
CTTGATAAACTCTACGAGAA+TGG | + | chr3_2:64529746-64529765 | Msa0417370:CDS | 35.0% | |
!! | AATGGTAGGCATTGAGAAAT+AGG | - | chr3_2:64529814-64529833 | None:intergenic | 35.0% |
TTTCTCAATGCCTACCATTA+AGG | + | chr3_2:64529815-64529834 | Msa0417370:intron | 35.0% | |
CAACTTATGGGCATATCATA+AGG | + | chr3_2:64530000-64530019 | Msa0417370:intron | 35.0% | |
ACATATTTCTTTGCAAGAGG+CGG | - | chr3_2:64530189-64530208 | None:intergenic | 35.0% | |
CAAAGTTGCCATTGATAGAT+TGG | + | chr3_2:64530290-64530309 | Msa0417370:CDS | 35.0% | |
! | TTTTTGTTGAAGCTCTTGAC+AGG | + | chr3_2:64530325-64530344 | Msa0417370:CDS | 35.0% |
! | GACAATTTATGCCTCTGAAA+TGG | + | chr3_2:64530410-64530429 | Msa0417370:intron | 35.0% |
ATCAGTTTGAACCATTTCAG+AGG | - | chr3_2:64530424-64530443 | None:intergenic | 35.0% | |
CCTTAGTTTAGGCTAACATT+TGG | - | chr3_2:64530472-64530491 | None:intergenic | 35.0% | |
! | CCAAATGTTAGCCTAAACTA+AGG | + | chr3_2:64530469-64530488 | Msa0417370:intron | 35.0% |
TTAGCCTAAACTAAGGAGTT+TGG | + | chr3_2:64530476-64530495 | Msa0417370:intron | 35.0% | |
TACACCTTGTAATGTGTTGA+AGG | + | chr3_2:64530509-64530528 | Msa0417370:intron | 35.0% | |
CACATGCAACAGATAAAACA+AGG | - | chr3_2:64530552-64530571 | None:intergenic | 35.0% | |
AACAAAGACACACAAAGATG+TGG | - | chr3_2:64530794-64530813 | None:intergenic | 35.0% | |
! | CTCCAGAATCTTTTAGTACA+CGG | + | chr3_2:64530955-64530974 | Msa0417370:CDS | 35.0% |
! | TCCAGAATCTTTTAGTACAC+GGG | + | chr3_2:64530956-64530975 | Msa0417370:CDS | 35.0% |
! | TTGTTCCCTTGTTGCTATTA+AGG | + | chr3_2:64531034-64531053 | Msa0417370:intron | 35.0% |
CTCATAATACGTGATATGGA+AGG | - | chr3_2:64531096-64531115 | None:intergenic | 35.0% | |
AAACCTATATAGACGATGGT+TGG | + | chr3_2:64531121-64531140 | Msa0417370:intron | 35.0% | |
TAACCAACCATCGTCTATAT+AGG | - | chr3_2:64531127-64531146 | None:intergenic | 35.0% | |
GTTCTTCTTGTGGTTGAATA+TGG | + | chr3_2:64531291-64531310 | Msa0417370:intron | 35.0% | |
TGCCTTCTAATATTACTGTG+AGG | + | chr3_2:64531340-64531359 | Msa0417370:CDS | 35.0% | |
AGCCTCACAGTAATATTAGA+AGG | - | chr3_2:64531345-64531364 | None:intergenic | 35.0% | |
ATAAGTCTCAAGATCCTCTA+AGG | - | chr3_2:64531373-64531392 | None:intergenic | 35.0% | |
!!! | TCTCCAATGACTTTGTTTTG+CGG | + | chr3_2:64531563-64531582 | Msa0417370:intron | 35.0% |
TTACCGCAAAACAAAGTCAT+TGG | - | chr3_2:64531569-64531588 | None:intergenic | 35.0% | |
TAAGTTGCAACAAGAAACAC+TGG | - | chr3_2:64531593-64531612 | None:intergenic | 35.0% | |
TTTGCACTCTGTCATATATG+TGG | + | chr3_2:64531738-64531757 | Msa0417370:intron | 35.0% | |
! | AAGCCACTCTCAGTTAATTT+TGG | - | chr3_2:64531827-64531846 | None:intergenic | 35.0% |
ATTTGATGCGTACCAAAAAC+TGG | - | chr3_2:64531850-64531869 | None:intergenic | 35.0% | |
TTGCTATGAATTACAGCTGA+TGG | + | chr3_2:64531924-64531943 | Msa0417370:intron | 35.0% | |
TGGATACAAATGCACAACTT+TGG | + | chr3_2:64531944-64531963 | Msa0417370:CDS | 35.0% | |
ACAACTTTGGTACATCATCA+GGG | + | chr3_2:64531957-64531976 | Msa0417370:CDS | 35.0% | |
TGACTTGATATCATTCATGC+TGG | + | chr3_2:64532100-64532119 | Msa0417370:CDS | 35.0% | |
!! | GAGCTTAGTTTTCATGTCAT+TGG | + | chr3_2:64532122-64532141 | Msa0417370:CDS | 35.0% |
!! | GCTTAGTTTTCATGTCATTG+GGG | + | chr3_2:64532124-64532143 | Msa0417370:CDS | 35.0% |
AAAAAGAATGGGACACTTGT+CGG | - | chr3_2:64532837-64532856 | None:intergenic | 35.0% | |
GATGTATAAGACAGTGAACA+GGG | - | chr3_2:64533296-64533315 | None:intergenic | 35.0% | |
! | ACGGTTTAGATGATCTTTTG+GGG | + | chr3_2:64533445-64533464 | Msa0417370:intron | 35.0% |
! | CTGTTTTGCTTGCATATGTA+TGG | + | chr3_2:64533529-64533548 | Msa0417370:intron | 35.0% |
AGTTTCTGTTGGACATTATC+AGG | + | chr3_2:64533553-64533572 | Msa0417370:intron | 35.0% | |
! | GTTTTCTGTAGGTTGTAGTA+TGG | - | chr3_2:64533597-64533616 | None:intergenic | 35.0% |
ATAACATGTCGATCGTTCAT+TGG | + | chr3_2:64533704-64533723 | Msa0417370:intron | 35.0% | |
!!! | TTTTCAGGGATTTGTTGTTG+TGG | + | chr3_2:64533847-64533866 | Msa0417370:intron | 35.0% |
GCATTGCAGAAAATATTTGG+TGG | - | chr3_2:64533948-64533967 | None:intergenic | 35.0% | |
GAACATGACAAAAGACTAGA+GGG | - | chr3_2:64533995-64534014 | None:intergenic | 35.0% | |
AGGAAGTTCAAAAACCCAAA+GGG | - | chr3_2:64534023-64534042 | None:intergenic | 35.0% | |
TAGGAAGTTCAAAAACCCAA+AGG | - | chr3_2:64534024-64534043 | None:intergenic | 35.0% | |
! | TTGGGTTTTTGAACTTCCTA+TGG | + | chr3_2:64534024-64534043 | Msa0417370:intron | 35.0% |
CTTCGGGATAACTACTTATA+AGG | - | chr3_2:64534463-64534482 | None:intergenic | 35.0% | |
CTTATAAGTAGTTATCCCGA+AGG | + | chr3_2:64534461-64534480 | Msa0417370:intron | 35.0% | |
TCTTCAAATTTGACTCCTTC+GGG | - | chr3_2:64534479-64534498 | None:intergenic | 35.0% | |
TTCACGTAGAATTTCAGTGA+AGG | - | chr3_2:64534569-64534588 | None:intergenic | 35.0% | |
! | TATTATGGTGGTGACAGATT+AGG | + | chr3_2:64534877-64534896 | Msa0417370:intron | 35.0% |
GATCAAAAAAGCCATAACAG+GGG | - | chr3_2:64535011-64535030 | None:intergenic | 35.0% | |
GGATCAAAAAAGCCATAACA+GGG | - | chr3_2:64535012-64535031 | None:intergenic | 35.0% | |
AGGATCAAAAAAGCCATAAC+AGG | - | chr3_2:64535013-64535032 | None:intergenic | 35.0% | |
! | TGATCCTTATGTCATTTGTG+TGG | + | chr3_2:64535026-64535045 | Msa0417370:intron | 35.0% |
TAATAAACCACTCCATTCTC+TGG | - | chr3_2:64535083-64535102 | None:intergenic | 35.0% | |
GAGAATGGAGTGGTTTATTA+TGG | + | chr3_2:64535083-64535102 | Msa0417370:CDS | 35.0% | |
! | TTCAAAGAAGATGCTTTTGG+TGG | + | chr3_2:64535111-64535130 | Msa0417370:CDS | 35.0% |
!! | AGCTTTCTTACTACTTTTGG+CGG | - | chr3_2:64535177-64535196 | None:intergenic | 35.0% |
ACACATTCTGATGCATCTTA+TGG | + | chr3_2:64535197-64535216 | Msa0417370:three_prime_UTR | 35.0% | |
TACTACTACACATGGATGGA+TGG | - | chr3_2:64529373-64529392 | None:intergenic | 40.0% | |
GAGAATCCACTCAGCAATAT+TGG | - | chr3_2:64529585-64529604 | None:intergenic | 40.0% | |
TGCCAAGAATTTCATGGACA+TGG | + | chr3_2:64529700-64529719 | Msa0417370:CDS | 40.0% | |
CACCATGTCCATGAAATTCT+TGG | - | chr3_2:64529705-64529724 | None:intergenic | 40.0% | |
CAAGAATTTCATGGACATGG+TGG | + | chr3_2:64529703-64529722 | Msa0417370:CDS | 40.0% | |
CGAAACATGACCTTAATGGT+AGG | - | chr3_2:64529828-64529847 | None:intergenic | 40.0% | |
AATAAGCTGCGAGCAACTTA+TGG | + | chr3_2:64529987-64530006 | Msa0417370:intron | 40.0% | |
ATAAGCTGCGAGCAACTTAT+GGG | + | chr3_2:64529988-64530007 | Msa0417370:intron | 40.0% | |
! | ACAAGTACTTGTGGGCTATT+TGG | - | chr3_2:64530043-64530062 | None:intergenic | 40.0% |
CATTCCTCCAATAACTTAGC+CGG | - | chr3_2:64530243-64530262 | None:intergenic | 40.0% | |
GGCTAAGTTATTGGAGGAAT+GGG | + | chr3_2:64530242-64530261 | Msa0417370:CDS | 40.0% | |
TTGTGCTTTGATAGACCATC+TGG | - | chr3_2:64530273-64530292 | None:intergenic | 40.0% | |
GTGTCCAAACTCCTTAGTTT+AGG | - | chr3_2:64530483-64530502 | None:intergenic | 40.0% | |
AGGTCCTTCAACACATTACA+AGG | - | chr3_2:64530516-64530535 | None:intergenic | 40.0% | |
ACAAGGGTCGAAAGTGAAAA+TGG | - | chr3_2:64530851-64530870 | None:intergenic | 40.0% | |
! | TTTTCGTTCTTCCTGCAAGA+AGG | - | chr3_2:64530901-64530920 | None:intergenic | 40.0% |
ACCCGTGTACTAAAAGATTC+TGG | - | chr3_2:64530960-64530979 | None:intergenic | 40.0% | |
!! | TTAGAAGGCATTGATTCCCT+CGG | - | chr3_2:64531330-64531349 | None:intergenic | 40.0% |
!! | TCTCAAGATCCTCTAAGGTT+GGG | - | chr3_2:64531368-64531387 | None:intergenic | 40.0% |
AGACTTATGCTGTGGAACAA+TGG | + | chr3_2:64531385-64531404 | Msa0417370:CDS | 40.0% | |
GACTTATGCTGTGGAACAAT+GGG | + | chr3_2:64531386-64531405 | Msa0417370:CDS | 40.0% | |
! | AGGTCTTGTCAACATGACTT+GGG | - | chr3_2:64531620-64531639 | None:intergenic | 40.0% |
! | AAGGTCTTGTCAACATGACT+TGG | - | chr3_2:64531621-64531640 | None:intergenic | 40.0% |
GCTCCAAAATTAACTGAGAG+TGG | + | chr3_2:64531821-64531840 | Msa0417370:CDS | 40.0% | |
CACAACTTTGGTACATCATC+AGG | + | chr3_2:64531956-64531975 | Msa0417370:CDS | 40.0% | |
! | TAGTTTTCATGTCATTGGGG+AGG | + | chr3_2:64532127-64532146 | Msa0417370:CDS | 40.0% |
ACACATTGACCGAATTTCAG+AGG | + | chr3_2:64532311-64532330 | Msa0417370:CDS | 40.0% | |
TATAGGGCAGGAAAGAAAGT+TGG | + | chr3_2:64532510-64532529 | Msa0417370:intron | 40.0% | |
ATTCAGTCATGCTCACTGAA+AGG | - | chr3_2:64532562-64532581 | None:intergenic | 40.0% | |
GAAAGTTTAGGGAAACTCCT+TGG | + | chr3_2:64532641-64532660 | Msa0417370:intron | 40.0% | |
TATGAAGCATGGACACCTAA+AGG | + | chr3_2:64532665-64532684 | Msa0417370:intron | 40.0% | |
GATACTCATACAACACGTGT+TGG | + | chr3_2:64532805-64532824 | Msa0417370:intron | 40.0% | |
AAGGCAATGTTGATCAACGA+GGG | + | chr3_2:64532901-64532920 | Msa0417370:intron | 40.0% | |
GGATGTATAAGACAGTGAAC+AGG | - | chr3_2:64533297-64533316 | None:intergenic | 40.0% | |
! | CGGTTTAGATGATCTTTTGG+GGG | + | chr3_2:64533446-64533465 | Msa0417370:intron | 40.0% |
!! | TTAGATGATCTTTTGGGGGA+AGG | + | chr3_2:64533450-64533469 | Msa0417370:intron | 40.0% |
!! | TAGATGATCTTTTGGGGGAA+GGG | + | chr3_2:64533451-64533470 | Msa0417370:intron | 40.0% |
TCTGTAGGTTGTAGTATGGA+CGG | - | chr3_2:64533593-64533612 | None:intergenic | 40.0% | |
! | CATCAGTCTGAAGTAGTAAC+AGG | - | chr3_2:64533679-64533698 | None:intergenic | 40.0% |
TGAACGATCGACATGTTATG+AGG | - | chr3_2:64533703-64533722 | None:intergenic | 40.0% | |
GGAACATGACAAAAGACTAG+AGG | - | chr3_2:64533996-64534015 | None:intergenic | 40.0% | |
TTCAAAAACCCAAAGGGAAG+GGG | - | chr3_2:64534017-64534036 | None:intergenic | 40.0% | |
GTTCAAAAACCCAAAGGGAA+GGG | - | chr3_2:64534018-64534037 | None:intergenic | 40.0% | |
AGTTCAAAAACCCAAAGGGA+AGG | - | chr3_2:64534019-64534038 | None:intergenic | 40.0% | |
ATTGTGGTACTCACTGTAGA+TGG | + | chr3_2:64534367-64534386 | Msa0417370:intron | 40.0% | |
TGCAGATAGTCAGTTTCCTT+CGG | + | chr3_2:64534733-64534752 | Msa0417370:intron | 40.0% | |
! | ACCTGATCTGTGACATTTTC+AGG | - | chr3_2:64534801-64534820 | None:intergenic | 40.0% |
AGAATCAAAGTTGCTTACCC+TGG | - | chr3_2:64534967-64534986 | None:intergenic | 40.0% | |
GTCTTACATATCCCCTGTTA+TGG | + | chr3_2:64534997-64535016 | Msa0417370:intron | 40.0% | |
TGCAATGATAACCATGATGG+AGG | + | chr3_2:64535230-64535249 | Msa0417370:three_prime_UTR | 40.0% | |
! | GCAATGATAACCATGATGGA+GGG | + | chr3_2:64535231-64535250 | Msa0417370:three_prime_UTR | 40.0% |
ACTACACATGGATGGATGGA+AGG | - | chr3_2:64529369-64529388 | None:intergenic | 45.0% | |
ATTGCGCCAATATTGCTGAG+TGG | + | chr3_2:64529576-64529595 | Msa0417370:intron | 45.0% | |
TTGGCAATGATCCTAACCTC+AGG | - | chr3_2:64529686-64529705 | None:intergenic | 45.0% | |
TCATCTGCGAAGCTATTCTC+AGG | + | chr3_2:64529771-64529790 | Msa0417370:CDS | 45.0% | |
GGGCTATTTGGAAGAGCTTA+TGG | - | chr3_2:64530031-64530050 | None:intergenic | 45.0% | |
!!! | TGAGTTTTGAATGTGCTCCG+TGG | + | chr3_2:64530126-64530145 | Msa0417370:intron | 45.0% |
CGGCTAAGTTATTGGAGGAA+TGG | + | chr3_2:64530241-64530260 | Msa0417370:CDS | 45.0% | |
GTGGTAACACGTTCTTCTTG+TGG | + | chr3_2:64531281-64531300 | Msa0417370:intron | 45.0% | |
CTTGTGGTTGAATATGGCAG+TGG | + | chr3_2:64531297-64531316 | Msa0417370:intron | 45.0% | |
!! | GTCTCAAGATCCTCTAAGGT+TGG | - | chr3_2:64531369-64531388 | None:intergenic | 45.0% |
GGATCTTGAGACTTATGCTG+TGG | + | chr3_2:64531377-64531396 | Msa0417370:CDS | 45.0% | |
TTATGCTGTGGAACAATGGG+AGG | + | chr3_2:64531389-64531408 | Msa0417370:CDS | 45.0% | |
GTAAACAGAACCTCTGACTC+AGG | - | chr3_2:64531686-64531705 | None:intergenic | 45.0% | |
! | TGAGAGTGGCTTCCAGTTTT+TGG | + | chr3_2:64531835-64531854 | Msa0417370:CDS | 45.0% |
! | TGCTCTTCATCGTCCACTTT+TGG | + | chr3_2:64532052-64532071 | Msa0417370:intron | 45.0% |
TGTGCAACAGATTCTCAGCA+AGG | - | chr3_2:64532168-64532187 | None:intergenic | 45.0% | |
ATTAAGGACCTTGCAGACCT+TGG | + | chr3_2:64532340-64532359 | Msa0417370:CDS | 45.0% | |
TTAAGGACCTTGCAGACCTT+GGG | + | chr3_2:64532341-64532360 | Msa0417370:CDS | 45.0% | |
CTGGTCAAACTTCAACAGGT+TGG | + | chr3_2:64532364-64532383 | Msa0417370:intron | 45.0% | |
AACTCCTTGGCTATGAAGCA+TGG | + | chr3_2:64532654-64532673 | Msa0417370:intron | 45.0% | |
GCATGGACACCTAAAGGATT+AGG | + | chr3_2:64532671-64532690 | Msa0417370:intron | 45.0% | |
CTAAAGGATTAGGCGTGTCA+CGG | + | chr3_2:64532681-64532700 | Msa0417370:intron | 45.0% | |
TTCTTTGCTTCGACACTCGT+TGG | + | chr3_2:64532761-64532780 | Msa0417370:intron | 45.0% | |
TTCTTTGCTTCGACACACCT+TGG | + | chr3_2:64532858-64532877 | Msa0417370:intron | 45.0% | |
GAAGGCAATGTTGATCAACG+AGG | + | chr3_2:64532900-64532919 | Msa0417370:intron | 45.0% | |
AGGCAATGTTGATCAACGAG+GGG | + | chr3_2:64532902-64532921 | Msa0417370:intron | 45.0% | |
TTAGCATGTCTGAGGAGCTA+TGG | - | chr3_2:64533214-64533233 | None:intergenic | 45.0% | |
ATAGCTCCTCAGACATGCTA+AGG | + | chr3_2:64533213-64533232 | Msa0417370:intron | 45.0% | |
TAGCTCCTCAGACATGCTAA+GGG | + | chr3_2:64533214-64533233 | Msa0417370:intron | 45.0% | |
!! | AGATGATCTTTTGGGGGAAG+GGG | + | chr3_2:64533452-64533471 | Msa0417370:intron | 45.0% |
TGTTGGACATTATCAGGCTC+TGG | + | chr3_2:64533559-64533578 | Msa0417370:intron | 45.0% | |
CATGTCGATCGTTCATTGGT+TGG | + | chr3_2:64533708-64533727 | Msa0417370:intron | 45.0% | |
!! | CGTTCATTGGTTGGCTTTAG+TGG | + | chr3_2:64533717-64533736 | Msa0417370:intron | 45.0% |
GAGACTTGATATGTGGTGAC+CGG | + | chr3_2:64534521-64534540 | Msa0417370:intron | 45.0% | |
GCCTGAAAATGTCACAGATC+AGG | + | chr3_2:64534797-64534816 | Msa0417370:CDS | 45.0% | |
! | GTGGTGACAGATTAGGTTGT+GGG | + | chr3_2:64534884-64534903 | Msa0417370:intron | 45.0% |
ATTATGACGAGTTCCCATCC+AGG | + | chr3_2:64534946-64534965 | Msa0417370:CDS | 45.0% | |
TTATGACGAGTTCCCATCCA+GGG | + | chr3_2:64534947-64534966 | Msa0417370:CDS | 45.0% | |
CAAAGTTGCTTACCCTGGAT+GGG | - | chr3_2:64534962-64534981 | None:intergenic | 45.0% | |
TCAAAGTTGCTTACCCTGGA+TGG | - | chr3_2:64534963-64534982 | None:intergenic | 45.0% | |
CCTGCCACACAAATGACATA+AGG | - | chr3_2:64535033-64535052 | None:intergenic | 45.0% | |
! | CCTTATGTCATTTGTGTGGC+AGG | + | chr3_2:64535030-64535049 | Msa0417370:intron | 45.0% |
GTGTGGCAGGATGTATTTGA+AGG | + | chr3_2:64535043-64535062 | Msa0417370:intron | 45.0% | |
!! | ACATAATAAATTTAATTAAA+AGG | - | chr3_2:64533335-64533354 | None:intergenic | 5.0% |
!! | AGTATATATTTAATTATATA+CGG | + | chr3_2:64533426-64533445 | Msa0417370:intron | 5.0% |
ATGGATGGAAGGAAGGAAGC+GGG | - | chr3_2:64529358-64529377 | None:intergenic | 50.0% | |
GATGGATGGAAGGAAGGAAG+CGG | - | chr3_2:64529359-64529378 | None:intergenic | 50.0% | |
CACATGGATGGATGGAAGGA+AGG | - | chr3_2:64529365-64529384 | None:intergenic | 50.0% | |
! | GCATATTGATGGACCTGTGC+CGG | + | chr3_2:64530221-64530240 | Msa0417370:CDS | 50.0% |
!! | ACCTGTGCCGGCTAAGTTAT+TGG | + | chr3_2:64530233-64530252 | Msa0417370:CDS | 50.0% |
TCCAATAACTTAGCCGGCAC+AGG | - | chr3_2:64530237-64530256 | None:intergenic | 50.0% | |
!! | TGTGCCGGCTAAGTTATTGG+AGG | + | chr3_2:64530236-64530255 | Msa0417370:CDS | 50.0% |
!! | TCATCGTCCACTTTTGGTGC+AGG | + | chr3_2:64532058-64532077 | Msa0417370:intron | 50.0% |
GTTGAAGTTTGACCAGCCCA+AGG | - | chr3_2:64532360-64532379 | None:intergenic | 50.0% | |
!! | TGGGCTGGTCAAACTTCAAC+AGG | + | chr3_2:64532360-64532379 | Msa0417370:CDS | 50.0% |
GTGTCCATGCTTCATAGCCA+AGG | - | chr3_2:64532661-64532680 | None:intergenic | 50.0% | |
CGTGACACGCCTAATCCTTT+AGG | - | chr3_2:64532683-64532702 | None:intergenic | 50.0% | |
! | AGAGTTGGTCCGACACTTGT+CGG | - | chr3_2:64532710-64532729 | None:intergenic | 50.0% |
! | TTTGAGACACCGGTCAGAGT+TGG | - | chr3_2:64532725-64532744 | None:intergenic | 50.0% |
TGCTTCGACACTCGTTGGAT+CGG | + | chr3_2:64532766-64532785 | Msa0417370:intron | 50.0% | |
GGCAATGTTGATCAACGAGG+GGG | + | chr3_2:64532903-64532922 | Msa0417370:intron | 50.0% | |
TGAACAGGGCACAGAGAGAA+AGG | - | chr3_2:64533282-64533301 | None:intergenic | 50.0% | |
TGTCATGTTCCCCTTCCCTT+TGG | + | chr3_2:64534005-64534024 | Msa0417370:intron | 50.0% | |
GTCATGTTCCCCTTCCCTTT+GGG | + | chr3_2:64534006-64534025 | Msa0417370:intron | 50.0% | |
CAATGGCATTACAGCAGACC+AGG | + | chr3_2:64534305-64534324 | Msa0417370:CDS | 50.0% | |
TCATCCTCGTGTTGCACAGA+GGG | + | chr3_2:64534764-64534783 | Msa0417370:CDS | 50.0% | |
!! | GTGACATTTTCAGGCACTGC+TGG | - | chr3_2:64534792-64534811 | None:intergenic | 50.0% |
! | GGTGGTGACAGATTAGGTTG+TGG | + | chr3_2:64534883-64534902 | Msa0417370:intron | 50.0% |
!! | GCTTTTGGTGGTCAAGTCTG+AGG | + | chr3_2:64535123-64535142 | Msa0417370:CDS | 50.0% |
! | TGGAAGGAAGGAAGCGGGTT+CGG | - | chr3_2:64529353-64529372 | None:intergenic | 55.0% |
GAGGAATGGGTGCTTCCAGA+TGG | + | chr3_2:64530255-64530274 | Msa0417370:CDS | 55.0% | |
ATGGCAGTGGAACTTTGCCG+AGG | + | chr3_2:64531310-64531329 | Msa0417370:intron | 55.0% | |
TGGCAGTGGAACTTTGCCGA+GGG | + | chr3_2:64531311-64531330 | Msa0417370:intron | 55.0% | |
TGTGAGGCTCCCAACCTTAG+AGG | + | chr3_2:64531356-64531375 | Msa0417370:CDS | 55.0% | |
CCTCTCTCCTGCACCAAAAG+TGG | - | chr3_2:64532068-64532087 | None:intergenic | 55.0% | |
!! | CCACTTTTGGTGCAGGAGAG+AGG | + | chr3_2:64532065-64532084 | Msa0417370:intron | 55.0% |
!! | CAGGAGAGAGGTGTTGATGC+TGG | + | chr3_2:64532077-64532096 | Msa0417370:intron | 55.0% |
TCACGGTGTCCGACAAGTGT+CGG | + | chr3_2:64532698-64532717 | Msa0417370:intron | 55.0% | |
! | AGTGTCGGACCAACTCTGAC+CGG | + | chr3_2:64532713-64532732 | Msa0417370:intron | 55.0% |
CGACGTGTCAATGTCGTGTC+AGG | + | chr3_2:64533178-64533197 | Msa0417370:intron | 55.0% | |
CTCCTCAGACATGCTAAGGG+TGG | + | chr3_2:64533217-64533236 | Msa0417370:intron | 55.0% | |
CTCCACCCTTAGCATGTCTG+AGG | - | chr3_2:64533222-64533241 | None:intergenic | 55.0% | |
CTCAGACATGCTAAGGGTGG+AGG | + | chr3_2:64533220-64533239 | Msa0417370:intron | 55.0% | |
GAGGATGAGCATTCTGCCGA+AGG | - | chr3_2:64534752-64534771 | None:intergenic | 55.0% | |
CTCATCCTCGTGTTGCACAG+AGG | + | chr3_2:64534763-64534782 | Msa0417370:CDS | 55.0% | |
CCACATTGCTCCCTCCATCA+TGG | - | chr3_2:64535244-64535263 | None:intergenic | 55.0% | |
! | CCATGATGGAGGGAGCAATG+TGG | + | chr3_2:64535241-64535260 | Msa0417370:three_prime_UTR | 55.0% |
! | AAGGAAGGAAGCGGGTTCGG+CGG | - | chr3_2:64529350-64529369 | None:intergenic | 60.0% |
TGACCAGCCCAAGGTCTGCA+AGG | - | chr3_2:64532351-64532370 | None:intergenic | 60.0% | |
GGTACCCTCTGTGCAACACG+AGG | - | chr3_2:64534771-64534790 | None:intergenic | 60.0% | |
CCATTCTCTGGCGCAGTCAC+AGG | - | chr3_2:64535071-64535090 | None:intergenic | 60.0% | |
CCTGTGACTGCGCCAGAGAA+TGG | + | chr3_2:64535068-64535087 | Msa0417370:CDS | 60.0% | |
GACTGCGCCAGAGAATGGAG+TGG | + | chr3_2:64535073-64535092 | Msa0417370:CDS | 60.0% | |
TCTGACTCAGGAGACGCCGC+TGG | - | chr3_2:64531674-64531693 | None:intergenic | 65.0% | |
AGCGGCGTCTCCTGAGTCAG+AGG | + | chr3_2:64531673-64531692 | Msa0417370:CDS | 65.0% | |
GGACCTTGCAGACCTTGGGC+TGG | + | chr3_2:64532345-64532364 | Msa0417370:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 64529286 | 64535418 | 64529286 | ID=Msa0417370;Name=Msa0417370 |
chr3_2 | mRNA | 64529286 | 64535418 | 64529286 | ID=Msa0417370-mRNA-1;Parent=Msa0417370;Name=Msa0417370-mRNA-1;_AED=0.11;_eAED=0.11;_QI=250|1|1|1|0.93|0.87|16|232|451 |
chr3_2 | exon | 64529286 | 64529515 | 64529286 | ID=Msa0417370-mRNA-1:exon:14322;Parent=Msa0417370-mRNA-1 |
chr3_2 | exon | 64529660 | 64529792 | 64529660 | ID=Msa0417370-mRNA-1:exon:14323;Parent=Msa0417370-mRNA-1 |
chr3_2 | exon | 64530179 | 64530346 | 64530179 | ID=Msa0417370-mRNA-1:exon:14324;Parent=Msa0417370-mRNA-1 |
chr3_2 | exon | 64530909 | 64530977 | 64530909 | ID=Msa0417370-mRNA-1:exon:14325;Parent=Msa0417370-mRNA-1 |
chr3_2 | exon | 64531317 | 64531410 | 64531317 | ID=Msa0417370-mRNA-1:exon:14326;Parent=Msa0417370-mRNA-1 |
chr3_2 | exon | 64531594 | 64531694 | 64531594 | ID=Msa0417370-mRNA-1:exon:14327;Parent=Msa0417370-mRNA-1 |
chr3_2 | exon | 64531811 | 64531856 | 64531811 | ID=Msa0417370-mRNA-1:exon:14328;Parent=Msa0417370-mRNA-1 |
chr3_2 | exon | 64531940 | 64531999 | 64531940 | ID=Msa0417370-mRNA-1:exon:14329;Parent=Msa0417370-mRNA-1 |
chr3_2 | exon | 64532080 | 64532148 | 64532080 | ID=Msa0417370-mRNA-1:exon:14330;Parent=Msa0417370-mRNA-1 |
chr3_2 | exon | 64532298 | 64532381 | 64532298 | ID=Msa0417370-mRNA-1:exon:14331;Parent=Msa0417370-mRNA-1 |
chr3_2 | exon | 64532515 | 64532598 | 64532515 | ID=Msa0417370-mRNA-1:exon:14332;Parent=Msa0417370-mRNA-1 |
chr3_2 | exon | 64533854 | 64533939 | 64533854 | ID=Msa0417370-mRNA-1:exon:14333;Parent=Msa0417370-mRNA-1 |
chr3_2 | exon | 64534236 | 64534326 | 64534236 | ID=Msa0417370-mRNA-1:exon:14334;Parent=Msa0417370-mRNA-1 |
chr3_2 | exon | 64534738 | 64534818 | 64534738 | ID=Msa0417370-mRNA-1:exon:14335;Parent=Msa0417370-mRNA-1 |
chr3_2 | exon | 64534894 | 64534968 | 64534894 | ID=Msa0417370-mRNA-1:exon:14336;Parent=Msa0417370-mRNA-1 |
chr3_2 | exon | 64535052 | 64535418 | 64535052 | ID=Msa0417370-mRNA-1:exon:14337;Parent=Msa0417370-mRNA-1 |
chr3_2 | five_prime_UTR | 64529286 | 64529515 | 64529286 | ID=Msa0417370-mRNA-1:five_prime_utr;Parent=Msa0417370-mRNA-1 |
chr3_2 | five_prime_UTR | 64529660 | 64529679 | 64529660 | ID=Msa0417370-mRNA-1:five_prime_utr;Parent=Msa0417370-mRNA-1 |
chr3_2 | CDS | 64529680 | 64529792 | 64529680 | ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1 |
chr3_2 | CDS | 64530179 | 64530346 | 64530179 | ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1 |
chr3_2 | CDS | 64530909 | 64530977 | 64530909 | ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1 |
chr3_2 | CDS | 64531317 | 64531410 | 64531317 | ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1 |
chr3_2 | CDS | 64531594 | 64531694 | 64531594 | ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1 |
chr3_2 | CDS | 64531811 | 64531856 | 64531811 | ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1 |
chr3_2 | CDS | 64531940 | 64531999 | 64531940 | ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1 |
chr3_2 | CDS | 64532080 | 64532148 | 64532080 | ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1 |
chr3_2 | CDS | 64532298 | 64532381 | 64532298 | ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1 |
chr3_2 | CDS | 64532515 | 64532598 | 64532515 | ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1 |
chr3_2 | CDS | 64533854 | 64533939 | 64533854 | ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1 |
chr3_2 | CDS | 64534236 | 64534326 | 64534236 | ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1 |
chr3_2 | CDS | 64534738 | 64534818 | 64534738 | ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1 |
chr3_2 | CDS | 64534894 | 64534968 | 64534894 | ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1 |
chr3_2 | CDS | 64535052 | 64535186 | 64535052 | ID=Msa0417370-mRNA-1:cds;Parent=Msa0417370-mRNA-1 |
chr3_2 | three_prime_UTR | 64535187 | 64535418 | 64535187 | ID=Msa0417370-mRNA-1:three_prime_utr;Parent=Msa0417370-mRNA-1 |
Gene Sequence |
Protein sequence |