AlfalfaGEDB | Msa0417700

M. sativa cultivar zhongmu-4 / Msa0417700

KEGG: K13414|K20605
GO: GO:0000165 GO:0000186 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007584 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009605 GO:0009611 GO:0009628 GO:0009631 GO:0009651 GO:0009888 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010449 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0022622 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0031410 GO:0031667 GO:0031982 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035266 GO:0035556 GO:0036211 GO:0040007 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0097159 GO:0097708 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902065 GO:1902531 GO:1902533
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0417700	GAU31237.1	65.706	347	58	5	1	343	117	406	6.46e-140	416

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0417700	sp\|Q39008\|M3K1_ARATH	44.715	369	126	7	27	354	221	552	3.44e-82	265

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0417700	A0A2Z6NN22	65.706	347	58	5	1	343	117	406	3.09e-140	416

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0269490	Msa0417700	0.837897	3.962407e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0417700	MtrunA17_Chr3g0115171	58.594	384	90	6	1	343	135	490	1.38e-131	387
Msa0417700	MtrunA17_Chr5g0424651	50.267	374	112	7	23	354	198	539	7.18e-105	320
Msa0417700	MtrunA17_Chr5g0424501	47.644	382	118	7	26	354	58	410	9.54e-98	298
Msa0417700	MtrunA17_Chr5g0424581	65.044	226	51	1	129	354	146	343	2.10e-96	292
Msa0417700	MtrunA17_Chr5g0424531	65.929	226	49	1	129	354	37	234	3.43e-96	288
Msa0417700	MtrunA17_Chr4g0051191	61.574	216	54	2	129	343	184	371	7.50e-83	258
Msa0417700	MtrunA17_Chr8g0386981	45.370	216	87	5	130	343	431	617	2.00e-46	169
Msa0417700	MtrunA17_Chr1g0202831	44.076	211	87	5	135	343	439	620	9.63e-43	158
Msa0417700	MtrunA17_Chr3g0130151	41.706	211	92	4	135	343	272	453	9.97e-43	157
Msa0417700	MtrunA17_Chr8g0384301	40.092	217	99	4	129	343	321	508	1.21e-41	154

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0417700	AT4G08500.1	44.715	369	126	7	27	354	221	552	3.49e-83	265
Msa0417700	AT4G08480.1	43.784	370	130	7	26	354	388	720	1.04e-79	259
Msa0417700	AT4G08470.1	49.618	262	99	4	86	342	277	510	5.62e-71	231
Msa0417700	AT4G08470.3	54.884	215	68	2	129	342	242	428	2.81e-70	228
Msa0417700	AT4G12020.4	40.267	375	140	9	15	354	1509	1834	1.31e-62	217
Msa0417700	AT4G12020.2	40.267	375	140	9	15	354	1517	1842	1.38e-62	217
Msa0417700	AT4G12020.5	40.267	375	140	9	15	354	1442	1767	1.58e-62	216
Msa0417700	AT4G12020.3	38.544	371	136	8	15	354	1517	1826	1.97e-57	202
Msa0417700	AT4G12020.10	38.544	371	136	8	15	354	1509	1818	2.18e-57	202
Msa0417700	AT4G08470.2	47.534	223	85	3	86	304	277	471	2.17e-54	186

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Find 98 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAGTGTCTCTCAAC+TGG	0.413057	3_2:-64978629	Msa0417700:CDS
AAAGGAAAGAACAATGGTTA+TGG	0.453131	3_2:-64975707	Msa0417700:CDS
AACATTCTGGATGGCCCCTG+AGG	0.614718	3_2:-64975873	Msa0417700:intron
AACTCCAAACATCAGCTTGA+AGG	0.428588	3_2:+64975684	None:intergenic
AAGAAGGTGAGGAAGTTGGT+AGG	0.489872	3_2:-64980127	Msa0417700:CDS
AAGTGTCTCTCAACTGGAGC+AGG	0.504432	3_2:-64978623	Msa0417700:intron
AAGTTTCATTGCTTGATCAA+AGG	0.511785	3_2:-64978660	Msa0417700:CDS
AATATATTGGTGCATGCAAG+TGG	0.617521	3_2:-64976103	Msa0417700:CDS
AATGATGTTAAATCATGCAA+GGG	0.573878	3_2:-64975899	Msa0417700:CDS
ACAACAACAACAGTCTCAGC+AGG	0.578585	3_2:+64980323	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCAAGTGTAAAATTACACC+TGG	-	chr3_2:64975959-64975978	Msa0417700:intron	30.0%
GTAGTTGAGGAATTTATGAT+TGG	-	chr3_2:64976234-64976253	Msa0417700:intron	30.0%
GTTCATTTCAAGAATATTGC+TGG	-	chr3_2:64976265-64976284	Msa0417700:intron	30.0%
ATTTCAAGAATATTGCTGGA+TGG	-	chr3_2:64976269-64976288	Msa0417700:intron	30.0%
TTTCAAGAATATTGCTGGAT+GGG	-	chr3_2:64976270-64976289	Msa0417700:intron	30.0%
TGCTATCTCTTTCAATATAG+TGG	-	chr3_2:64976326-64976345	Msa0417700:intron	30.0%
TTACTAACATTCAATCTCTC+CGG	-	chr3_2:64976399-64976418	Msa0417700:intron	30.0%
CAAAATTTAAGGGTAGCTAA+CGG	-	chr3_2:64976433-64976452	Msa0417700:intron	30.0%
TCGTATTGTTCATTCTGATT+AGG	-	chr3_2:64976824-64976843	Msa0417700:CDS	30.0%
CTAATACACAATTCAGTTAG+GGG	+	chr3_2:64976871-64976890	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	64975559	64980387	64975559	ID=Msa0417700;Name=Msa0417700
chr3_2	mRNA	64975559	64980387	64975559	ID=Msa0417700-mRNA-1;Parent=Msa0417700;Name=Msa0417700-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0\|0\|0\|0.87\|1\|1\|8\|0\|360
chr3_2	exon	64980005	64980387	64980005	ID=Msa0417700-mRNA-1:exon:14547;Parent=Msa0417700-mRNA-1
chr3_2	exon	64978624	64978708	64978624	ID=Msa0417700-mRNA-1:exon:14546;Parent=Msa0417700-mRNA-1
chr3_2	exon	64978354	64978405	64978354	ID=Msa0417700-mRNA-1:exon:14545;Parent=Msa0417700-mRNA-1
chr3_2	exon	64977035	64977100	64977035	ID=Msa0417700-mRNA-1:exon:14544;Parent=Msa0417700-mRNA-1
chr3_2	exon	64976760	64976946	64976760	ID=Msa0417700-mRNA-1:exon:14543;Parent=Msa0417700-mRNA-1
chr3_2	exon	64976069	64976141	64976069	ID=Msa0417700-mRNA-1:exon:14542;Parent=Msa0417700-mRNA-1
chr3_2	exon	64975874	64975933	64975874	ID=Msa0417700-mRNA-1:exon:14541;Parent=Msa0417700-mRNA-1
chr3_2	exon	64975559	64975735	64975559	ID=Msa0417700-mRNA-1:exon:14540;Parent=Msa0417700-mRNA-1
chr3_2	CDS	64980005	64980387	64980005	ID=Msa0417700-mRNA-1:cds;Parent=Msa0417700-mRNA-1
chr3_2	CDS	64978624	64978708	64978624	ID=Msa0417700-mRNA-1:cds;Parent=Msa0417700-mRNA-1
chr3_2	CDS	64978354	64978405	64978354	ID=Msa0417700-mRNA-1:cds;Parent=Msa0417700-mRNA-1
chr3_2	CDS	64977035	64977100	64977035	ID=Msa0417700-mRNA-1:cds;Parent=Msa0417700-mRNA-1
chr3_2	CDS	64976760	64976946	64976760	ID=Msa0417700-mRNA-1:cds;Parent=Msa0417700-mRNA-1
chr3_2	CDS	64976069	64976141	64976069	ID=Msa0417700-mRNA-1:cds;Parent=Msa0417700-mRNA-1
chr3_2	CDS	64975874	64975933	64975874	ID=Msa0417700-mRNA-1:cds;Parent=Msa0417700-mRNA-1
chr3_2	CDS	64975559	64975735	64975559	ID=Msa0417700-mRNA-1:cds;Parent=Msa0417700-mRNA-1

Gene Sequence

>Msa0417700

TTGACTGAGAATTCTGAAGACAGTGATAGGATTAGAGATGAGCCTGCTGAGACTGTTGTTGTTGTTGGTGACGAGGGTATCAATGGTATTCATCCACCTATAGTGAAGTCACCACCGGGGACGAAGATTCCAGTTGTTGACAATAACACTTGTTCCACTTGGGATCTTTTGAAGGAATTGTTTCAGGTAAGGGAAGGCGAAGAAGGGCTTTTTGACGATGAACAGGAAGTGGCGGGGAAAGAAGGTGAGGAAGTTGGTAGGGTAAGTCTGAAGAGAGAAGAGGAAGAGGGGATGGTGGATAATGCAGCAAGGGGTGCGGAAATTGTTACTACTTATAATGAAGGTGATTCTTCTAGCACTGCCACTAACCTAGGTCCAATAACCGATGGATTCTTTTTTGATGTAAAAGAAGTTTCATTGCTTGATCAAAGGGATCGGGGAAAACAAAGTGTCTCTCAACTGGAGCAGGAAATCGCACTTTTGAGTCGTTTTAAACATGACAATATAGTTCAATACTATGGCAATGAAGTGCAGTCTATTATATGCACTTTAAAGGATCCACATGAGTACAAGACTGCAACAATTGGGCATTGCCTATATTTGATGTTATTGCATGATGAATCCAAGCTGTATATATTCATTGAACTTGTAACCAAAGGTTCTCTTAGAAGCCTATATCAGAGGTACACTCTTCAAGATTCCCAAGTATCTGTCTATACAAGACAGATTCTGCATGGTTTGAAATATCTTCATGATCAAAATGTGGTTCACAGGGATATCAAATGTGCAAATATATTGGTGCATGCAAGTGGATCTGTCAAACTCGCCGATTTTGAGTTAACAAAGGAAACCAAATTGAATGATGTTAAATCATGCAAGGGGACAACATTCTGGATGGCCCCTGAGGTCGTGAAAGGAAAGAACAATGGTTATGGCCTTCAAGCTGATGTTTGGAGTTTGGGATGCACTGTGCTGGAGATGCTAACTGGCCAAATTCCATACTCCAATTTGGAATGTGTATGTGCCATGTCATTGCTATTTTTTCTCCCATTACCTTCTGTAGGTGTCAGTAAGGGTGGTTAA

Protein sequence

>Msa0417700

LTENSEDSDRIRDEPAETVVVVGDEGINGIHPPIVKSPPGTKIPVVDNNTCSTWDLLKELFQVREGEEGLFDDEQEVAGKEGEEVGRVSLKREEEEGMVDNAARGAEIVTTYNEGDSSSTATNLGPITDGFFFDVKEVSLLDQRDRGKQSVSQLEQEIALLSRFKHDNIVQYYGNEVQSIICTLKDPHEYKTATIGHCLYLMLLHDESKLYIFIELVTKGSLRSLYQRYTLQDSQVSVYTRQILHGLKYLHDQNVVHRDIKCANILVHASGSVKLADFELTKETKLNDVKSCKGTTFWMAPEVVKGKNNGYGLQADVWSLGCTVLEMLTGQIPYSNLECVCAMSLLFFLPLPSVGVSKGG*