AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0418520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0418520 MtrunA17_Chr3g0116271 97.331 562 15 0 1 562 1 562 0.0 1119
Msa0418520 MtrunA17_Chr3g0116251 92.553 564 36 3 1 562 1 560 0.0 1024
Msa0418520 MtrunA17_Chr1g0186071 52.087 551 249 7 6 555 17 553 0.0 543
Msa0418520 MtrunA17_Chr1g0157401 44.306 562 271 10 16 554 14 556 4.71e-160 468
Msa0418520 MtrunA17_Chr8g0353341 43.470 536 263 11 11 521 6 526 8.21e-143 423
Msa0418520 MtrunA17_Chr4g0028411 43.333 540 273 12 29 551 12 535 3.83e-139 414
Msa0418520 MtrunA17_Chr2g0327341 41.848 552 284 13 20 554 4 535 6.39e-138 410
Msa0418520 MtrunA17_Chr1g0197391 43.693 547 287 8 17 551 22 559 2.79e-136 407
Msa0418520 MtrunA17_Chr5g0409771 40.636 566 298 12 2 550 3 547 1.41e-131 395
Msa0418520 MtrunA17_Chr4g0039791 41.135 564 302 13 2 550 5 553 8.49e-131 393
Msa0418520 MtrunA17_Chr5g0409791 40.734 518 278 9 63 557 55 566 3.57e-123 374
Msa0418520 MtrunA17_Chr1g0180541 39.388 556 291 14 23 551 5 541 1.70e-119 363
Msa0418520 MtrunA17_Chr1g0180551 40.106 566 291 16 23 557 74 622 2.25e-119 366
Msa0418520 MtrunA17_Chr5g0395431 37.454 542 310 8 26 550 50 579 4.26e-107 333
Msa0418520 MtrunA17_Chr3g0102411 34.470 528 315 10 36 548 20 531 5.36e-98 308
Msa0418520 MtrunA17_Chr4g0000461 38.477 499 285 8 67 550 43 534 6.09e-98 308
Msa0418520 MtrunA17_Chr4g0072561 37.352 506 289 9 63 550 45 540 1.14e-95 302
Msa0418520 MtrunA17_Chr2g0334131 52.174 276 128 2 279 550 1 276 3.87e-93 286
Msa0418520 MtrunA17_Chr1g0157431 34.831 356 190 10 16 348 14 350 3.36e-54 192
Msa0418520 MtrunA17_Chr6g0471921 26.113 494 339 13 69 548 24 505 1.93e-41 156
Msa0418520 MtrunA17_Chr5g0396311 27.256 543 342 16 52 559 17 541 5.13e-38 147
Msa0418520 MtrunA17_Chr8g0370701 25.926 594 376 18 3 559 19 585 3.31e-37 145
Msa0418520 MtrunA17_Chr6g0471311 27.146 431 256 12 162 562 153 555 1.05e-34 138
Msa0418520 MtrunA17_Chr8g0370731 26.698 427 270 10 160 559 86 496 1.64e-34 137
Msa0418520 MtrunA17_Chr5g0433231 25.963 493 304 16 91 559 95 550 1.52e-33 134
Msa0418520 MtrunA17_Chr5g0433241 29.921 381 232 12 197 558 184 548 2.88e-33 134
Msa0418520 MtrunA17_Chr5g0396331 27.818 417 264 11 165 559 138 539 4.98e-33 133
Msa0418520 MtrunA17_Chr3g0109731 28.763 372 218 10 207 550 194 546 6.32e-32 130
Msa0418520 MtrunA17_Chr5g0433221 25.992 504 296 18 91 562 95 553 8.63e-30 123
Msa0418520 MtrunA17_Chr2g0301671 24.021 562 355 18 52 562 23 563 1.36e-29 123
Msa0418520 MtrunA17_Chr4g0068151 24.670 531 320 20 76 550 45 551 3.07e-29 122
Msa0418520 MtrunA17_Chr4g0028451 45.794 107 49 1 416 522 10 107 1.04e-25 101
Msa0418520 MtrunA17_Chr1g0205711 28.527 319 171 11 201 473 259 566 2.21e-23 104
Msa0418520 MtrunA17_Chr2g0292471 24.818 411 254 11 125 490 75 475 4.45e-23 103
Msa0418520 MtrunA17_Chr7g0252691 23.408 534 347 16 72 554 201 723 3.97e-21 97.8
Msa0418520 MtrunA17_Chr3g0121931 29.412 374 181 14 201 496 262 630 3.58e-20 94.7
Msa0418520 MtrunA17_Chr4g0004101 23.899 318 212 8 259 550 10 323 7.75e-20 90.9
Msa0418520 MtrunA17_Chr5g0406681 23.577 369 244 12 198 547 209 558 4.64e-19 90.9
Msa0418520 MtrunA17_Chr4g0004841 25.820 244 164 7 322 553 97 335 1.41e-17 84.3
Msa0418520 MtrunA17_Chr8g0377991 33.488 215 121 7 328 528 458 664 2.11e-17 85.9
Msa0418520 MtrunA17_Chr7g0270221 27.327 333 188 12 201 485 182 508 5.71e-17 84.3
Msa0418520 MtrunA17_Chr3g0121951 34.254 181 102 5 328 496 451 626 3.88e-16 82.0
Msa0418520 MtrunA17_Chr5g0396711 26.343 391 223 15 154 485 165 549 6.70e-16 80.9
Msa0418520 MtrunA17_Chr8g0388081 25.348 359 210 12 148 459 114 461 8.35e-16 80.5
Msa0418520 MtrunA17_Chr5g0396691 25.061 411 244 16 127 485 151 549 9.42e-16 80.5
Msa0418520 MtrunA17_Chr1g0194371 26.426 333 192 13 201 485 221 548 1.15e-14 77.0
Msa0418520 MtrunA17_Chr2g0329161 22.826 460 283 18 147 551 621 1063 1.63e-13 73.9
Msa0418520 MtrunA17_Chr4g0033141 24.941 421 242 21 187 551 664 1066 2.82e-11 67.0
Msa0418520 MtrunA17_Chr1g0160041 33.333 180 92 9 323 490 421 584 4.78e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0418520 AT5G63380.1 59.469 565 215 7 8 562 2 562 0.0 664
Msa0418520 AT1G20510.1 44.640 569 269 13 15 562 3 546 3.36e-162 473
Msa0418520 AT5G38120.1 43.902 574 278 12 1 556 1 548 4.79e-159 465
Msa0418520 AT1G20500.1 43.088 557 287 9 12 554 6 546 2.98e-156 458
Msa0418520 AT1G20480.1 43.540 565 279 12 10 553 15 560 6.80e-152 447
Msa0418520 AT5G38120.3 42.963 540 264 12 1 522 1 514 2.70e-141 419
Msa0418520 AT4G05160.1 42.620 542 278 11 29 552 12 538 1.11e-135 405
Msa0418520 AT1G20510.2 42.915 494 238 12 15 487 3 473 1.90e-126 379
Msa0418520 AT4G19010.1 40.625 512 282 8 66 562 62 566 4.60e-126 381
Msa0418520 AT5G38120.4 42.178 505 248 12 1 487 1 479 1.80e-123 372
Msa0418520 AT5G38120.2 42.178 505 248 12 1 487 1 479 1.80e-123 372
Msa0418520 AT1G20510.3 41.737 472 231 12 15 465 3 451 4.26e-115 350
Msa0418520 AT3G21240.1 38.391 547 301 10 23 550 17 546 1.74e-109 338
Msa0418520 AT1G65060.1 38.447 541 299 11 27 550 33 556 3.58e-104 325
Msa0418520 AT1G51680.1 36.332 567 316 10 10 550 6 553 5.32e-100 314
Msa0418520 AT3G21230.1 35.963 545 323 7 24 550 24 560 3.34e-97 307
Msa0418520 AT1G62940.1 37.044 548 303 12 29 556 13 538 3.74e-97 306
Msa0418520 AT1G20490.2 38.322 441 230 10 16 435 10 429 6.35e-90 284
Msa0418520 AT1G20490.1 38.322 441 230 10 16 435 10 429 6.35e-90 284
Msa0418520 AT1G51680.3 35.250 539 304 10 10 522 6 525 1.95e-87 281
Msa0418520 AT3G21230.3 35.010 517 310 7 24 522 24 532 1.02e-85 276
Msa0418520 AT3G21240.2 36.701 485 271 10 23 488 17 484 8.28e-84 270
Msa0418520 AT3G21240.3 36.701 485 271 10 23 488 17 484 8.28e-84 270
Msa0418520 AT1G51680.2 34.990 503 282 10 10 486 6 489 3.12e-77 253
Msa0418520 AT3G21230.2 34.096 481 291 7 24 486 24 496 2.75e-74 245
Msa0418520 AT1G65060.2 34.279 458 267 11 27 467 33 473 2.30e-66 224
Msa0418520 AT1G77240.1 26.268 552 357 14 38 554 5 541 1.91e-44 166
Msa0418520 AT3G21230.4 29.710 414 265 7 24 419 24 429 1.95e-42 158
Msa0418520 AT1G21540.1 26.118 559 354 15 38 554 5 546 7.70e-41 155
Msa0418520 AT5G16370.1 26.943 579 348 18 29 562 1 549 7.90e-41 155
Msa0418520 AT5G16340.1 26.770 579 349 17 29 562 1 549 4.77e-39 150
Msa0418520 AT1G21530.2 25.627 558 361 14 38 556 5 547 1.29e-38 149
Msa0418520 AT1G75960.1 30.446 381 230 10 192 554 178 541 2.35e-38 148
Msa0418520 AT1G21530.1 26.381 561 351 17 38 556 5 545 1.90e-37 146
Msa0418520 AT1G66120.1 25.182 548 346 15 52 554 17 545 5.77e-37 145
Msa0418520 AT3G48990.1 25.971 489 332 13 76 548 30 504 3.55e-36 142
Msa0418520 AT1G65890.1 24.645 564 336 17 52 554 17 552 9.57e-35 139
Msa0418520 AT1G65880.1 24.823 564 336 17 52 554 17 553 7.44e-34 136
Msa0418520 AT2G17650.1 25.134 561 345 17 52 559 64 602 1.84e-31 129
Msa0418520 AT1G76290.1 24.910 558 355 16 41 562 13 542 4.49e-31 127
Msa0418520 AT1G20560.2 26.685 371 241 10 192 547 103 457 4.91e-30 123
Msa0418520 AT1G20560.1 26.685 371 241 10 192 547 181 535 8.35e-30 124
Msa0418520 AT5G27600.1 29.444 360 188 13 163 473 227 569 2.85e-26 114
Msa0418520 AT1G68270.1 23.936 564 316 20 52 558 17 524 9.14e-26 111
Msa0418520 AT1G30520.2 24.792 480 293 13 125 550 80 545 2.26e-25 110
Msa0418520 AT1G30520.1 24.792 480 293 13 125 550 80 545 2.26e-25 110
Msa0418520 AT3G16910.1 25.765 392 251 14 182 550 180 554 2.68e-25 110
Msa0418520 AT3G16170.1 24.449 499 306 18 98 550 127 600 3.24e-25 110
Msa0418520 AT3G05970.1 27.273 319 175 10 201 473 262 569 2.50e-21 98.6
Msa0418520 AT1G30520.3 25.130 386 235 10 125 470 80 451 5.94e-20 93.6
Msa0418520 AT1G30520.4 25.130 386 235 10 125 470 80 451 5.94e-20 93.6
Msa0418520 AT5G36880.2 23.247 542 338 17 72 554 193 715 8.86e-20 94.0
Msa0418520 AT5G36880.6 23.247 542 338 17 72 554 143 665 1.03e-19 93.6
Msa0418520 AT5G36880.3 23.247 542 338 17 72 554 143 665 1.03e-19 93.6
Msa0418520 AT5G36880.5 23.247 542 338 17 72 554 143 665 1.03e-19 93.6
Msa0418520 AT5G36880.1 23.247 542 338 17 72 554 143 665 1.03e-19 93.6
Msa0418520 AT1G64400.1 28.846 312 167 10 196 459 219 523 5.59e-19 91.3
Msa0418520 AT2G47240.4 26.230 427 243 16 201 562 162 581 2.09e-17 86.3
Msa0418520 AT4G23850.1 26.593 361 203 13 148 459 176 523 2.09e-17 86.3
Msa0418520 AT2G47240.1 26.230 427 243 16 201 562 221 640 2.37e-17 86.3
Msa0418520 AT2G47240.2 26.230 427 243 16 201 562 221 640 2.37e-17 86.3
Msa0418520 AT2G47240.3 26.230 427 243 16 201 562 221 640 2.37e-17 86.3
Msa0418520 AT3G23790.1 28.479 309 146 11 201 441 264 565 1.13e-15 80.9
Msa0418520 AT4G14070.1 27.034 381 188 15 132 438 214 578 2.27e-15 80.1
Msa0418520 AT4G11030.1 23.773 387 239 14 146 486 174 550 1.45e-13 73.9
Msa0418520 AT1G77590.2 33.714 175 99 8 322 485 270 438 5.85e-11 65.5
Msa0418520 AT1G77590.1 33.714 175 99 8 322 485 416 584 7.55e-11 65.5

Find 205 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAACCAAAGCTCCCCTTTC+TGG 0.150099 3_2:-66277691 None:intergenic
GACTGTGCCAAGGGGTAGTT+TGG 0.256466 3_2:-66274315 None:intergenic
CGTCATCATACGCGTGCTTC+AGG 0.280905 3_2:-66274526 None:intergenic
ACTGCAGCATCAGCAATTTC+AGG 0.286327 3_2:-66278395 None:intergenic
ACCTTTATCAGCTATTCTTT+TGG 0.288642 3_2:+66279504 Msa0418520:three_prime_UTR
TTTGACTCGTCCGGTTGTTC+CGG 0.302096 3_2:-66274450 None:intergenic
GGATCGGAGGGTGGAGGGAG+AGG 0.308329 3_2:-66273933 None:intergenic
GATCAAATACAAAGCTTATC+AGG 0.313622 3_2:+66278252 Msa0418520:CDS
GCGGAGGCTGTGGAAGGTTC+TGG 0.316498 3_2:-66273901 None:intergenic
GGGAGCGGTGGTGCGCCGCT+TGG 0.320085 3_2:+66274803 Msa0418520:CDS
AAGATAGTTGACCCTGTTAC+TGG 0.325199 3_2:+66277650 Msa0418520:CDS
GAGAGAGGATCGGAGGGTGG+AGG 0.325965 3_2:-66273939 None:intergenic
GATAATGACTCCCCAGTAAC+AGG 0.332219 3_2:-66277662 None:intergenic
TAATTACCTTTCATGATTGT+TGG 0.332934 3_2:-66277719 None:intergenic
ACCTGCACAATTTCCACATT+GGG 0.334454 3_2:-66274860 None:intergenic
ATGAAGATAGAGATTTGATT+TGG 0.337527 3_2:-66274076 None:intergenic
GGTAACTTCATCGCTTTAAT+CGG 0.343989 3_2:+66274491 Msa0418520:CDS
ATTAGTTCGATTCGGTTGTT+GGG 0.344628 3_2:+66274782 Msa0418520:CDS
CATTTAATCATTTATTCATA+AGG 0.346497 3_2:+66279440 Msa0418520:three_prime_UTR
GGAGCGGTGGTGCGCCGCTT+GGG 0.353021 3_2:+66274804 Msa0418520:CDS
CTGGCCAGAAAGGGGAGCTT+TGG 0.355601 3_2:+66277687 Msa0418520:CDS
GGGCGATTGGGCGGAGGCTG+TGG 0.356963 3_2:-66273911 None:intergenic
TTGTGCTTGTTAGTAATTAG+TGG 0.359654 3_2:+66279467 Msa0418520:three_prime_UTR
AGGGAGAGAGGATCGGAGGG+TGG 0.361143 3_2:-66273942 None:intergenic
ATTGTTTACTTGTAGGGATA+TGG 0.368434 3_2:+66277530 Msa0418520:intron
GGTATTGGCCATTGAGTTAG+TGG 0.374567 3_2:-66273814 None:intergenic
TGAGAACAGTAACCGGTGTT+TGG 0.375035 3_2:-66273876 None:intergenic
GATGACAGCGACGTGGCCTT+TGG 0.384926 3_2:-66274123 None:intergenic
GCCAAAAGAATAGCTGATAA+AGG 0.385076 3_2:-66279505 None:intergenic
GCTGCAGTAATGTTGCTTCC+TGG 0.386988 3_2:-66278748 None:intergenic
AGAGAGTAGTGTGGGATTGA+AGG 0.390301 3_2:-66274100 None:intergenic
CTCTTCTCATCCGGAACAAC+CGG 0.392218 3_2:+66274440 Msa0418520:CDS
GGGTCGACTAGCAGAAAATA+TGG 0.400111 3_2:+66277622 Msa0418520:CDS
GGAGGAAGGTGGGGTAAGTG+AGG 0.409454 3_2:-66274052 None:intergenic
CATATAGGAGTATAACAATA+TGG 0.410278 3_2:-66279403 None:intergenic
AGAGAGGATCGGAGGGTGGA+GGG 0.411408 3_2:-66273938 None:intergenic
GGAGAGGGGCGATTGGGCGG+AGG 0.415578 3_2:-66273917 None:intergenic
GGAGAGGAGAGTGGGTTAGC+AGG 0.415708 3_2:-66274215 None:intergenic
AGTGAGGTGGTGGTCGGTGG+CGG 0.416517 3_2:-66274036 None:intergenic
GAGAACAGTAACCGGTGTTT+GGG 0.420094 3_2:-66273875 None:intergenic
TGTTAGAGTGTGGTTGGTAT+TGG 0.420365 3_2:-66273829 None:intergenic
GTGGAGGGAGAGGGGCGATT+GGG 0.421367 3_2:-66273923 None:intergenic
GTAAGTGAGGTGGTGGTCGG+TGG 0.423734 3_2:-66274039 None:intergenic
ATCGGAGGGTGGAGGGAGAG+GGG 0.423801 3_2:-66273931 None:intergenic
GGTGGAGGGAGAGGGGCGAT+TGG 0.424348 3_2:-66273924 None:intergenic
TGAAGGCGGTTGAGAAGTAT+AGG 0.426249 3_2:+66274687 Msa0418520:CDS
TTGATTTGGCGGAGGAAGGT+GGG 0.427789 3_2:-66274062 None:intergenic
GAGGAGGGAGAAATAGAGTA+CGG 0.430842 3_2:-66274171 None:intergenic
GGAGGGGCAGCAAGAATGAT+AGG 0.430991 3_2:+66277569 Msa0418520:CDS
GTTGGAAACGGCGGTGGTGG+TGG 0.435778 3_2:-66273991 None:intergenic
TATTAGTTCGATTCGGTTGT+TGG 0.435812 3_2:+66274781 Msa0418520:CDS
GTTGTTGGAAACGGCGGTGG+TGG 0.436291 3_2:-66273994 None:intergenic
GAGGGAGAGGGGCGATTGGG+CGG 0.436315 3_2:-66273920 None:intergenic
CCCCAATGTGGAAATTGTGC+AGG 0.440981 3_2:+66274859 Msa0418520:CDS
GGCGGTGGTGTTGTTGGAAA+CGG 0.441612 3_2:-66274003 None:intergenic
ATTTGCCCTGCATCTTCATC+AGG 0.445963 3_2:-66278700 None:intergenic
CATTATCTCCTGGCCAGAAA+GGG 0.448093 3_2:+66277678 Msa0418520:CDS
CGGTGGTGCGCCGCTTGGGA+AGG 0.448533 3_2:+66274808 Msa0418520:CDS
CAAAGCTCCCCTTTCTGGCC+AGG 0.450934 3_2:-66277686 None:intergenic
CATGGACTATGTTGCGAAGC+AGG 0.450950 3_2:+66278777 Msa0418520:CDS
TGTTTCGACAGGGCGAAGTT+CGG 0.451751 3_2:-66274393 None:intergenic
GATCGGAGGGTGGAGGGAGA+GGG 0.452748 3_2:-66273932 None:intergenic
GGAAGGTGGGGTAAGTGAGG+TGG 0.459896 3_2:-66274049 None:intergenic
TTTGATTTGGCGGAGGAAGG+TGG 0.461950 3_2:-66274063 None:intergenic
GAATAAATGATTAAATGTAT+TGG 0.462580 3_2:-66279434 None:intergenic
AAGCAACATTACTGCAGCTC+AGG 0.465134 3_2:+66278753 Msa0418520:CDS
AGATTTGATTTGGCGGAGGA+AGG 0.466365 3_2:-66274066 None:intergenic
ATAGAGTACGGGGACGTGTA+TGG 0.470056 3_2:-66274159 None:intergenic
GATGAGGGCGGTGGTGTTGT+TGG 0.471305 3_2:-66274009 None:intergenic
TAATACTCCTTTGACTCGTC+CGG 0.471789 3_2:-66274459 None:intergenic
TCTGATTGACTTGTTTCGAC+AGG 0.476408 3_2:-66274404 None:intergenic
GCCGCTTGGGAAGGAGGTTG+CGG 0.477833 3_2:+66274817 Msa0418520:CDS
GATGGTGAGAGCTTTGGCCA+TGG 0.477837 3_2:+66274619 Msa0418520:CDS
GGTGTTTGGGTCGATGGTGG+TGG 0.478921 3_2:-66273862 None:intergenic
AGTATGATATTAGTTCGATT+CGG 0.481766 3_2:+66274774 Msa0418520:CDS
AGTATGTGCTCTAATTCAGC+TGG 0.482576 3_2:-66278362 None:intergenic
CGATGGTGACGCCGAGGGAG+AGG 0.484080 3_2:-66274190 None:intergenic
GGTGTTGTTGGAAACGGCGG+TGG 0.485401 3_2:-66273997 None:intergenic
GATTGAAGATGAACCGCATC+CGG 0.487397 3_2:+66274550 Msa0418520:CDS
AACCTGCACAATTTCCACAT+TGG 0.488140 3_2:-66274861 None:intergenic
CTGAAGCACGCGTATGATGA+CGG 0.488866 3_2:+66274527 Msa0418520:CDS
AGTGTCGCCACCGCTGATTA+CGG 0.490252 3_2:+66274724 Msa0418520:CDS
GCAGCAATCCTCTTCTCATC+CGG 0.491754 3_2:+66274431 Msa0418520:CDS
GGGGTAAGTGAGGTGGTGGT+CGG 0.492854 3_2:-66274042 None:intergenic
AGCATCAGCAATTTCAGGAT+TGG 0.493174 3_2:-66278390 None:intergenic
TGAAGCACGCGTATGATGAC+GGG 0.493539 3_2:+66274528 Msa0418520:CDS
ACTGTGCCAAGGGGTAGTTT+GGG 0.493753 3_2:-66274314 None:intergenic
GTCGGTGGCGGCATCGATGA+GGG 0.494151 3_2:-66274024 None:intergenic
GATTGGGCGGAGGCTGTGGA+AGG 0.499317 3_2:-66273907 None:intergenic
TGGTGCGCCGCTTGGGAAGG+AGG 0.500170 3_2:+66274811 Msa0418520:CDS
ATGGTGAGAGCTTTGGCCAT+GGG 0.504644 3_2:+66274620 Msa0418520:CDS
GACGTGGAGAATGCGATGAC+CGG 0.509346 3_2:-66274272 None:intergenic
CTCTTCAACCACTAACTCAA+TGG 0.509986 3_2:+66273806 Msa0418520:exon
TGATTTGGCGGAGGAAGGTG+GGG 0.510168 3_2:-66274061 None:intergenic
AAGATAGAGATTTGATTTGG+CGG 0.513086 3_2:-66274073 None:intergenic
ACTGGGGAGTCATTATCTCC+TGG 0.514409 3_2:+66277668 Msa0418520:CDS
GGCGGCATCGATGAGGGCGG+TGG 0.514868 3_2:-66274018 None:intergenic
GCCTTTGGAGAGAGTAGTGT+GGG 0.517781 3_2:-66274108 None:intergenic
GTAATCAGCGGTGGCGACAC+TGG 0.517881 3_2:-66274722 None:intergenic
CTGATTGACTTGTTTCGACA+GGG 0.520253 3_2:-66274403 None:intergenic
CGGTTGTTCCGGATGAGAAG+AGG 0.520963 3_2:-66274439 None:intergenic
TAACGTATCTTGAACAGAAA+GGG 0.521077 3_2:+66273758 Msa0418520:five_prime_UTR
GGATATGGTCTGACTGAAAG+TGG 0.522524 3_2:+66277545 Msa0418520:CDS
TCTGGAATGAGAACAGTAAC+CGG 0.522872 3_2:-66273883 None:intergenic
GTTGATATTGCTCTAACTAG+TGG 0.525743 3_2:+66279312 Msa0418520:CDS
TCGATTCGGTTGTTGGGGAG+CGG 0.526443 3_2:+66274788 Msa0418520:CDS
AGATAGTTGACCCTGTTACT+GGG 0.529008 3_2:+66277651 Msa0418520:CDS
CAAGGCGACTGTTGAGACAT+TGG 0.529632 3_2:+66278144 Msa0418520:CDS
GCATAGTCGGTGAGGGAGAG+AGG 0.529847 3_2:-66273954 None:intergenic
TTGAACACGGAAAGAAAAGA+AGG 0.530918 3_2:-66274350 None:intergenic
GGTGCCAGTGCAGGTTATGT+AGG 0.531010 3_2:+66278115 Msa0418520:intron
ATAGAGATTTGATTTGGCGG+AGG 0.531532 3_2:-66274070 None:intergenic
GTAACCGGTGTTTGGGTCGA+TGG 0.532707 3_2:-66273868 None:intergenic
AGCTAAGCGCCACGGTTCTG+TGG 0.533413 3_2:+66277601 Msa0418520:CDS
AACTTCATCGCTTTAATCGG+AGG 0.533711 3_2:+66274494 Msa0418520:CDS
AGGTATCCTGATGAAGATGC+AGG 0.534795 3_2:+66278694 Msa0418520:intron
TCATTATCTCCTGGCCAGAA+AGG 0.535246 3_2:+66277677 Msa0418520:CDS
GGTCTGACTGAAAGTGGAGG+AGG 0.537107 3_2:+66277551 Msa0418520:CDS
GGCGTTTACTAAGTCGGAGT+TGG 0.537296 3_2:+66274745 Msa0418520:CDS
AGGAGGGAGAAATAGAGTAC+GGG 0.537451 3_2:-66274170 None:intergenic
TTTCTTACCACAAAAGCCAT+TGG 0.538521 3_2:-66278724 None:intergenic
TCTCGTTCGTCTCATCAATC+CGG 0.539034 3_2:+66274253 Msa0418520:CDS
AGGTGGGGTAAGTGAGGTGG+TGG 0.539145 3_2:-66274046 None:intergenic
ATAACGTATCTTGAACAGAA+AGG 0.540696 3_2:+66273757 Msa0418520:five_prime_UTR
GCTAAGCGCCACGGTTCTGT+GGG 0.543305 3_2:+66277602 Msa0418520:CDS
GGTCGGTGGCGGCATCGATG+AGG 0.545313 3_2:-66274025 None:intergenic
ACGGGGACGTGTATGGAAGA+AGG 0.549108 3_2:-66274152 None:intergenic
TGACTGTGTTAGAGTGTGGT+TGG 0.550074 3_2:-66273835 None:intergenic
GTCTGACTGAAAGTGGAGGA+GGG 0.551229 3_2:+66277552 Msa0418520:CDS
CATTACTGCAGCTCAGGTCA+TGG 0.553234 3_2:+66278759 Msa0418520:CDS
AAAGGGGAGCTTTGGTTGCG+AGG 0.553296 3_2:+66277695 Msa0418520:CDS
TCAGAGGGATGGCTGAAGAC+CGG 0.555043 3_2:+66278169 Msa0418520:CDS
GGTGAGGGAGAGAGGATCGG+AGG 0.555228 3_2:-66273946 None:intergenic
ACTCTGAAGGAGAGGAGAGT+GGG 0.556625 3_2:-66274223 None:intergenic
GAGTGGGTTAGCAGGAGCGA+TGG 0.557131 3_2:-66274207 None:intergenic
TGGTGACGCCGAGGGAGAGG+AGG 0.557643 3_2:-66274187 None:intergenic
GAGGAGAGAGAGTGCATAGT+CGG 0.560478 3_2:-66273967 None:intergenic
TATTTCTCCCTCCTCTCCCT+CGG 0.560685 3_2:+66274179 Msa0418520:CDS
TGTTGAGACATTGGATTCAG+AGG 0.562613 3_2:+66278153 Msa0418520:CDS
AAACGGCGGTGGTGGTGGAG+AGG 0.563143 3_2:-66273986 None:intergenic
GTCGGTGAGGGAGAGAGGAT+CGG 0.564240 3_2:-66273949 None:intergenic
GTATTGGTGAAGTATCATAT+AGG 0.569161 3_2:-66279418 None:intergenic
ATCAGTTACGACTGTGCCAA+GGG 0.570762 3_2:-66274324 None:intergenic
GGTGACGCCGAGGGAGAGGA+GGG 0.571601 3_2:-66274186 None:intergenic
GGAACAACCGGACGAGTCAA+AGG 0.573988 3_2:+66274452 Msa0418520:CDS
CTGTGCCAAGGGGTAGTTTG+GGG 0.574638 3_2:-66274313 None:intergenic
TCTATTCCAAAATCTCCAGC+TGG 0.577274 3_2:+66279267 Msa0418520:CDS
CGGGGACGTGTATGGAAGAA+GGG 0.579328 3_2:-66274151 None:intergenic
AACTCTGAAGGAGAGGAGAG+TGG 0.582089 3_2:-66274224 None:intergenic
GTTGAGACATTGGATTCAGA+GGG 0.583163 3_2:+66278154 Msa0418520:CDS
ATTCGGTTGTTGGGGAGCGG+TGG 0.584180 3_2:+66274791 Msa0418520:CDS
ATGAGATAACTCTGAAGGAG+AGG 0.586724 3_2:-66274231 None:intergenic
GTATGTGCTCTAATTCAGCT+GGG 0.588117 3_2:-66278361 None:intergenic
GAGAGAGTGCATAGTCGGTG+AGG 0.591049 3_2:-66273962 None:intergenic
AAAATCCCCAAACTACCCCT+TGG 0.592785 3_2:+66274308 Msa0418520:CDS
GTCAAAATAACAAAGATCAC+CGG 0.592946 3_2:-66278188 None:intergenic
GATAGTTGACCCTGTTACTG+GGG 0.593991 3_2:+66277652 Msa0418520:CDS
GGAAACAACGACACCGGATG+CGG 0.595570 3_2:-66274563 None:intergenic
CGTGTATGGAAGAAGGGACG+AGG 0.596988 3_2:-66274145 None:intergenic
AATCAGTTACGACTGTGCCA+AGG 0.597190 3_2:-66274325 None:intergenic
AGGAGCGATGGTGACGCCGA+GGG 0.598986 3_2:-66274195 None:intergenic
AGACATTGGATTCAGAGGGA+TGG 0.601070 3_2:+66278158 Msa0418520:CDS
ACACGTCGTATCTTCTTGTA+CGG 0.603152 3_2:-66279231 None:intergenic
AGAGAGTGCATAGTCGGTGA+GGG 0.605137 3_2:-66273961 None:intergenic
GTTCATTGTAGATAGACTGA+AGG 0.608097 3_2:+66278225 Msa0418520:CDS
ACCGGTGTTTGGGTCGATGG+TGG 0.609402 3_2:-66273865 None:intergenic
TTAGTTCGATTCGGTTGTTG+GGG 0.609605 3_2:+66274783 Msa0418520:CDS
ATTATCTCCTGGCCAGAAAG+GGG 0.612166 3_2:+66277679 Msa0418520:CDS
TTTGATGAAGCTAAGCGCCA+CGG 0.614262 3_2:+66277593 Msa0418520:CDS
TTAGTAAACGCCGTAATCAG+CGG 0.616576 3_2:-66274734 None:intergenic
AAGTTCGGTATCAGTATCAA+CGG 0.617012 3_2:-66274378 None:intergenic
TCTGACTGAAAGTGGAGGAG+GGG 0.617119 3_2:+66277553 Msa0418520:CDS
CGAGGACCAACAATCATGAA+AGG 0.618566 3_2:+66277713 Msa0418520:CDS
ACGAGATGAGATAACTCTGA+AGG 0.618892 3_2:-66274236 None:intergenic
GATTACGGCGTTTACTAAGT+CGG 0.619807 3_2:+66274739 Msa0418520:CDS
AGTGTGACTGTGTTAGAGTG+TGG 0.620246 3_2:-66273839 None:intergenic
CAGGAGCGATGGTGACGCCG+AGG 0.622951 3_2:-66274196 None:intergenic
TCCGCAACCTCCTTCCCAAG+CGG 0.626066 3_2:-66274818 None:intergenic
GGTGGTGTTGTTGGAAACGG+CGG 0.628744 3_2:-66274000 None:intergenic
GTGAGGGAGAGAGGATCGGA+GGG 0.629726 3_2:-66273945 None:intergenic
AGACGTTGGTGATGATGCAG+AGG 0.629831 3_2:+66274645 Msa0418520:CDS
ACCACCATCGACCCAAACAC+CGG 0.630252 3_2:+66273864 Msa0418520:CDS
AAAGGAGTATTATTAACTCA+CGG 0.632386 3_2:+66274470 Msa0418520:CDS
TGGTGAGAGCTTTGGCCATG+GGG 0.633827 3_2:+66274621 Msa0418520:CDS
CCTGCACAATTTCCACATTG+GGG 0.635844 3_2:-66274859 None:intergenic
ATGTGCTCTAATTCAGCTGG+GGG 0.639820 3_2:-66278359 None:intergenic
AGATGCAGGGCAAATTCCAA+TGG 0.641785 3_2:+66278708 Msa0418520:CDS
GGAAGCGGAAACAACGACAC+CGG 0.643897 3_2:-66274569 None:intergenic
GGTGGCGGCATCGATGAGGG+CGG 0.646001 3_2:-66274021 None:intergenic
GGTATCCTGATGAAGATGCA+GGG 0.646637 3_2:+66278695 Msa0418520:intron
TATGTGCTCTAATTCAGCTG+GGG 0.654273 3_2:-66278360 None:intergenic
GGTGAGAGCTTTGGCCATGG+GGG 0.656509 3_2:+66274622 Msa0418520:CDS
ATAATGACTCCCCAGTAACA+GGG 0.657918 3_2:-66277661 None:intergenic
AGGTTATGTAGGAGATGACA+AGG 0.664375 3_2:+66278126 Msa0418520:intron
TCCCACACTACTCTCTCCAA+AGG 0.665351 3_2:+66274107 Msa0418520:CDS
GGCCTTTGGAGAGAGTAGTG+TGG 0.665557 3_2:-66274109 None:intergenic
CAAAGCTAAATTCCCCAATG+TGG 0.668229 3_2:+66274847 Msa0418520:CDS
GGAGGGAGAAATAGAGTACG+GGG 0.671555 3_2:-66274169 None:intergenic
TTCGGTATCAGTATCAACGG+TGG 0.683288 3_2:-66274375 None:intergenic
ATCAACGGTGGAATTGAACA+CGG 0.689055 3_2:-66274363 None:intergenic
TATGGTCTGACTGAAAGTGG+AGG 0.699989 3_2:+66277548 Msa0418520:CDS
GGACGAGGATGACAGCGACG+TGG 0.710869 3_2:-66274130 None:intergenic
GTAAACGCCGTAATCAGCGG+TGG 0.713378 3_2:-66274731 None:intergenic
CTAGTCGACCCACAGAACCG+TGG 0.717085 3_2:-66277610 None:intergenic
TCAGTTACGACTGTGCCAAG+GGG 0.738618 3_2:-66274323 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTGATAATTGAAAATA+AGG - chr3_2:66276370-66276389 None:intergenic 10.0%
!!! TTTTTCCAAAAAAAAAAAAA+AGG - chr3_2:66276416-66276435 None:intergenic 10.0%
!!! TTTTTTTTTTTTTGGAAAAA+TGG + chr3_2:66276416-66276435 Msa0418520:intron 10.0%
!!! ACATAAATTTTACTTTAATA+TGG + chr3_2:66276826-66276845 Msa0418520:intron 10.0%
!! TTCTTAATTATTTATTCAAT+TGG - chr3_2:66277164-66277183 None:intergenic 10.0%
!! ATAAAAAACAAACAAATAAA+AGG - chr3_2:66277504-66277523 None:intergenic 10.0%
!!! AATTGTTATTTAATGTATAT+TGG + chr3_2:66278576-66278595 Msa0418520:intron 10.0%
!! AAAGAAAAAATATTGTTACT+TGG + chr3_2:66275963-66275982 Msa0418520:intron 15.0%
!!! AAAATGATTTTTTTTTGTGT+GGG - chr3_2:66275990-66276009 None:intergenic 15.0%
!!! AAAAATGATTTTTTTTTGTG+TGG - chr3_2:66275991-66276010 None:intergenic 15.0%
!!! TTTGTTGTTAAATAAATGAA+GGG - chr3_2:66276043-66276062 None:intergenic 15.0%
!!! TTTTGTTGTTAAATAAATGA+AGG - chr3_2:66276044-66276063 None:intergenic 15.0%
!!! AAATTTTACTTTAATATGGA+AGG + chr3_2:66276830-66276849 Msa0418520:intron 15.0%
!!! AATTTTACTTTAATATGGAA+GGG + chr3_2:66276831-66276850 Msa0418520:intron 15.0%
!!! AATAGTATTTTTTTCTTATG+TGG + chr3_2:66276884-66276903 Msa0418520:intron 15.0%
!!! ATAGTATTTTTTTCTTATGT+GGG + chr3_2:66276885-66276904 Msa0418520:intron 15.0%
!! TTAAGTAAAGATAATATTAG+TGG + chr3_2:66277892-66277911 Msa0418520:intron 15.0%
!! GAATAAATGATTAAATGTAT+TGG - chr3_2:66279437-66279456 None:intergenic 15.0%
!! CATTTAATCATTTATTCATA+AGG + chr3_2:66279440-66279459 Msa0418520:three_prime_UTR 15.0%
!! GATAATTAAAAAACAGAAGT+GGG - chr3_2:66274901-66274920 None:intergenic 20.0%
!! TGATAATTAAAAAACAGAAG+TGG - chr3_2:66274902-66274921 None:intergenic 20.0%
!!! TCACAAACAATAAAGAATTT+TGG + chr3_2:66275344-66275363 Msa0418520:intron 20.0%
!!! ACCTTAATTTAAGTTTCATT+TGG + chr3_2:66275401-66275420 Msa0418520:intron 20.0%
!!! CCTTAATTTAAGTTTCATTT+GGG + chr3_2:66275402-66275421 Msa0418520:intron 20.0%
!!! CTTAATTTAAGTTTCATTTG+GGG + chr3_2:66275403-66275422 Msa0418520:intron 20.0%
!! GAGTTAAAAATATTATCACT+AGG + chr3_2:66275498-66275517 Msa0418520:intron 20.0%
!! TTAAAGTGACTAACATAATA+AGG + chr3_2:66275678-66275697 Msa0418520:intron 20.0%
!! GTATATTTAAAAGAATGTGT+CGG - chr3_2:66275828-66275847 None:intergenic 20.0%
!! TGTTATTAAGGTTCATATTA+GGG + chr3_2:66276978-66276997 Msa0418520:intron 20.0%
!! GTAATATATACTCTAATTCT+AGG - chr3_2:66277007-66277026 None:intergenic 20.0%
!! TAATTGTCTCATGTTTATTA+TGG + chr3_2:66278094-66278113 Msa0418520:intron 20.0%
!! TTTCTAAATTATAGTTCATG+TGG + chr3_2:66278510-66278529 Msa0418520:intron 20.0%
! ATGAAGATAGAGATTTGATT+TGG - chr3_2:66274079-66274098 None:intergenic 25.0%
!!! AAAGGAGTATTATTAACTCA+CGG + chr3_2:66274470-66274489 Msa0418520:CDS 25.0%
!!! TGTGTTTGGATTTTTTATGA+TGG + chr3_2:66274601-66274620 Msa0418520:CDS 25.0%
! AGTATGATATTAGTTCGATT+CGG + chr3_2:66274774-66274793 Msa0418520:CDS 25.0%
! AAACGAAATTACTGTTCAAA+AGG - chr3_2:66275115-66275134 None:intergenic 25.0%
! TGAACAGTAATTTCGTTTAA+AGG + chr3_2:66275117-66275136 Msa0418520:intron 25.0%
!! CAATAAAGAATTTTGGACAT+AGG + chr3_2:66275351-66275370 Msa0418520:intron 25.0%
! CCCAAATGAAACTTAAATTA+AGG - chr3_2:66275405-66275424 None:intergenic 25.0%
! ATTAAGGGAGTAATTGTTAT+TGG - chr3_2:66275724-66275743 None:intergenic 25.0%
! TACTCCCTTAATACTAAATT+TGG + chr3_2:66275732-66275751 Msa0418520:intron 25.0%
! ACTCCCTTAATACTAAATTT+GGG + chr3_2:66275733-66275752 Msa0418520:intron 25.0%
! TTGTTTGCCTATTAGAATTA+GGG + chr3_2:66275867-66275886 Msa0418520:intron 25.0%
! TTATTGAAGGTCATATTAAG+AGG - chr3_2:66275936-66275955 None:intergenic 25.0%
! TTAATATGACCTTCAATAAC+AGG + chr3_2:66275937-66275956 Msa0418520:intron 25.0%
! TTCTTTAAACCTGTTATTGA+AGG - chr3_2:66275949-66275968 None:intergenic 25.0%
!!! AAAAAAAAAAAAAAGGCACC+TGG - chr3_2:66276409-66276428 None:intergenic 25.0%
!!! AGGTGCCTTTTTTTTTTTTT+TGG + chr3_2:66276408-66276427 Msa0418520:intron 25.0%
!! TTTTTGATCAGAAATTGCAT+AGG + chr3_2:66276535-66276554 Msa0418520:intron 25.0%
!! AGTTTCAAAAACATTTTCGA+CGG - chr3_2:66276606-66276625 None:intergenic 25.0%
! ACTTGAATTAGATCAATTGA+TGG + chr3_2:66276623-66276642 Msa0418520:intron 25.0%
! CAACCAAAAATATTGTTTCA+TGG - chr3_2:66276912-66276931 None:intergenic 25.0%
! AATATGAACCTTAATAACAG+AGG - chr3_2:66276977-66276996 None:intergenic 25.0%
! CTGTTATTAAGGTTCATATT+AGG + chr3_2:66276977-66276996 Msa0418520:intron 25.0%
! GTTATTAAGGTTCATATTAG+GGG + chr3_2:66276979-66276998 Msa0418520:intron 25.0%
! AATTCCAATGCTTCTATAAT+AGG - chr3_2:66277347-66277366 None:intergenic 25.0%
! TTGATGTATTGTTTACTTGT+AGG + chr3_2:66277523-66277542 Msa0418520:intron 25.0%
! TGATGTATTGTTTACTTGTA+GGG + chr3_2:66277524-66277543 Msa0418520:intron 25.0%
! TAATTACCTTTCATGATTGT+TGG - chr3_2:66277722-66277741 None:intergenic 25.0%
! TTAATAAACCTCTCCATTTA+TGG + chr3_2:66277739-66277758 Msa0418520:intron 25.0%
! TAATAAACCTCTCCATTTAT+GGG + chr3_2:66277740-66277759 Msa0418520:intron 25.0%
! AGCAATCATATGTAATAGAT+GGG - chr3_2:66277995-66278014 None:intergenic 25.0%
! TAGCAATCATATGTAATAGA+TGG - chr3_2:66277996-66278015 None:intergenic 25.0%
! GTACAGCTTAACAAAAAAAT+TGG - chr3_2:66278029-66278048 None:intergenic 25.0%
! TAGATATCTCAAGCTATATT+TGG - chr3_2:66278076-66278095 None:intergenic 25.0%
! TAGCAAGGAAATGTAAATAT+AGG - chr3_2:66278328-66278347 None:intergenic 25.0%
! ATTAAAGCAGTAGATACATA+CGG - chr3_2:66278425-66278444 None:intergenic 25.0%
!! TAAATCTACTGCTAATCTTT+TGG + chr3_2:66278666-66278685 Msa0418520:intron 25.0%
!! AAATCTACTGCTAATCTTTT+GGG + chr3_2:66278667-66278686 Msa0418520:intron 25.0%
! AATCAAAACATGTAGTTAGA+TGG + chr3_2:66278991-66279010 Msa0418520:intron 25.0%
! ATTATGTTCATTATTGTTGC+AGG + chr3_2:66279203-66279222 Msa0418520:intron 25.0%
!! CATATAGGAGTATAACAATA+TGG - chr3_2:66279406-66279425 None:intergenic 25.0%
ATAACGTATCTTGAACAGAA+AGG + chr3_2:66273757-66273776 Msa0418520:five_prime_UTR 30.0%
TAACGTATCTTGAACAGAAA+GGG + chr3_2:66273758-66273777 Msa0418520:five_prime_UTR 30.0%
!! AAGATAGAGATTTGATTTGG+CGG - chr3_2:66274076-66274095 None:intergenic 30.0%
AATCCAAACACATGAAAAAG+CGG - chr3_2:66274593-66274612 None:intergenic 30.0%
AATTAAAAAACAGAAGTGGG+TGG - chr3_2:66274898-66274917 None:intergenic 30.0%
AGATAGTATGCTTCTTTACA+CGG + chr3_2:66275277-66275296 Msa0418520:intron 30.0%
! AATTTAAGTTTCATTTGGGG+AGG + chr3_2:66275406-66275425 Msa0418520:intron 30.0%
TCCAATAAGAAGTGAATAGA+CGG + chr3_2:66275597-66275616 Msa0418520:intron 30.0%
!!! TTTTGTGATTTTTTCACACG+AGG - chr3_2:66275643-66275662 None:intergenic 30.0%
TCGTGTGAAAAAATCACAAA+AGG + chr3_2:66275642-66275661 Msa0418520:intron 30.0%
CGTGTGAAAAAATCACAAAA+GGG + chr3_2:66275643-66275662 Msa0418520:intron 30.0%
! TTAGTCACTTTAAGAGAAAC+GGG - chr3_2:66275671-66275690 None:intergenic 30.0%
! GTTAGTCACTTTAAGAGAAA+CGG - chr3_2:66275672-66275691 None:intergenic 30.0%
TATTGGTGGAATTAAACTCA+TGG - chr3_2:66275707-66275726 None:intergenic 30.0%
TAGAAGAACAAAAGTTATGG+TGG - chr3_2:66275763-66275782 None:intergenic 30.0%
! ACCATAACTTTTGTTCTTCT+AGG + chr3_2:66275762-66275781 Msa0418520:intron 30.0%
CTTGTTTGCCTATTAGAATT+AGG + chr3_2:66275866-66275885 Msa0418520:intron 30.0%
TGTTTGCCTATTAGAATTAG+GGG + chr3_2:66275868-66275887 Msa0418520:intron 30.0%
TAGTTTCAAGGTCCATATTA+GGG - chr3_2:66275897-66275916 None:intergenic 30.0%
! AAAAATGAACCCATTTTCGA+CGG - chr3_2:66276258-66276277 None:intergenic 30.0%
! TACTCTTTGGTTTCTGATTT+CGG + chr3_2:66276441-66276460 Msa0418520:intron 30.0%
ATCAAAGTAGAGCAGTTTAT+AGG - chr3_2:66276583-66276602 None:intergenic 30.0%
!! AGAAATGGGTTTTCAGATTT+TGG + chr3_2:66276661-66276680 Msa0418520:intron 30.0%
!! GAAATGGGTTTTCAGATTTT+GGG + chr3_2:66276662-66276681 Msa0418520:intron 30.0%
TCAATTGATGAAGATGAAGA+AGG + chr3_2:66276733-66276752 Msa0418520:intron 30.0%
GATAGAAGAAGAACAAATTC+TGG + chr3_2:66276759-66276778 Msa0418520:intron 30.0%
TACTATTTAAATCACAGCAG+CGG - chr3_2:66276871-66276890 None:intergenic 30.0%
! GGACCATGAAACAATATTTT+TGG + chr3_2:66276906-66276925 Msa0418520:intron 30.0%
!! CTATTGAAGGTCATTTTAAG+AGG + chr3_2:66276939-66276958 Msa0418520:intron 30.0%
TGAAACTCACACACATAAAT+TGG - chr3_2:66277270-66277289 None:intergenic 30.0%
CAATGCTTCTATAATAGGAT+AGG - chr3_2:66277342-66277361 None:intergenic 30.0%
! CTATCCTATTATAGAAGCAT+TGG + chr3_2:66277340-66277359 Msa0418520:intron 30.0%
TTGTTTGAATAAACGATGTG+TGG + chr3_2:66277452-66277471 Msa0418520:intron 30.0%
ATTGTTTACTTGTAGGGATA+TGG + chr3_2:66277530-66277549 Msa0418520:intron 30.0%
CTAACATTATGCAAATGCAA+TGG - chr3_2:66277768-66277787 None:intergenic 30.0%
CATTGCATTTGCATAATGTT+AGG + chr3_2:66277766-66277785 Msa0418520:intron 30.0%
TCATGAACATAGCAAATCTT+TGG - chr3_2:66277814-66277833 None:intergenic 30.0%
! TCTCACTTTAGTTCATTGAT+TGG + chr3_2:66277943-66277962 Msa0418520:intron 30.0%
GTCAAAATAACAAAGATCAC+CGG - chr3_2:66278191-66278210 None:intergenic 30.0%
!!! CTTTGTTATTTTGACTCAGA+TGG + chr3_2:66278196-66278215 Msa0418520:CDS 30.0%
GATCAAATACAAAGCTTATC+AGG + chr3_2:66278252-66278271 Msa0418520:CDS 30.0%
TAAATATAGGCGATAGCAAA+TGG - chr3_2:66278315-66278334 None:intergenic 30.0%
!!! ACATTTCCTTGCTATTTTTC+AGG + chr3_2:66278334-66278353 Msa0418520:intron 30.0%
TTAAAGCAGTAGATACATAC+GGG - chr3_2:66278424-66278443 None:intergenic 30.0%
TAGTGAACCTTCTTATTAGA+CGG - chr3_2:66278648-66278667 None:intergenic 30.0%
! AATCTACTGCTAATCTTTTG+GGG + chr3_2:66278668-66278687 Msa0418520:intron 30.0%
! ACGATGCACTACTATAATTT+TGG - chr3_2:66278950-66278969 None:intergenic 30.0%
AACCGTCAAATGCTATAAAT+AGG + chr3_2:66279036-66279055 Msa0418520:intron 30.0%
CTCCTATTTATAGCATTTGA+CGG - chr3_2:66279041-66279060 None:intergenic 30.0%
! GTATTGGTGAAGTATCATAT+AGG - chr3_2:66279421-66279440 None:intergenic 30.0%
! TTGTGCTTGTTAGTAATTAG+TGG + chr3_2:66279467-66279486 Msa0418520:three_prime_UTR 30.0%
! ACCTTTATCAGCTATTCTTT+TGG + chr3_2:66279504-66279523 Msa0418520:three_prime_UTR 30.0%
TTGAACACGGAAAGAAAAGA+AGG - chr3_2:66274353-66274372 None:intergenic 35.0%
AAGTTCGGTATCAGTATCAA+CGG - chr3_2:66274381-66274400 None:intergenic 35.0%
GGTAACTTCATCGCTTTAAT+CGG + chr3_2:66274491-66274510 Msa0418520:CDS 35.0%
!! TTTTATGATGGTGAGAGCTT+TGG + chr3_2:66274613-66274632 Msa0418520:CDS 35.0%
!! ATGCAGAGGTTTGATTTTGA+AGG + chr3_2:66274659-66274678 Msa0418520:CDS 35.0%
!! TGCAGAGGTTTGATTTTGAA+GGG + chr3_2:66274660-66274679 Msa0418520:CDS 35.0%
!! TGATTTTGAAGGGATGTTGA+AGG + chr3_2:66274670-66274689 Msa0418520:CDS 35.0%
!! TATTAGTTCGATTCGGTTGT+TGG + chr3_2:66274781-66274800 Msa0418520:CDS 35.0%
!! ATTAGTTCGATTCGGTTGTT+GGG + chr3_2:66274782-66274801 Msa0418520:CDS 35.0%
GTAGAAAGATCATATAGACG+AGG - chr3_2:66274961-66274980 None:intergenic 35.0%
TCGGATTTAACTGGATTATC+GGG - chr3_2:66275544-66275563 None:intergenic 35.0%
CTCGGATTTAACTGGATTAT+CGG - chr3_2:66275545-66275564 None:intergenic 35.0%
TTAACAGAAAATGAGTGGCT+CGG - chr3_2:66275563-66275582 None:intergenic 35.0%
AAGCCTTAACAGAAAATGAG+TGG - chr3_2:66275568-66275587 None:intergenic 35.0%
! TCATTTTCTGTTAAGGCTTG+TGG + chr3_2:66275569-66275588 Msa0418520:intron 35.0%
ACCGTCTATTCACTTCTTAT+TGG - chr3_2:66275601-66275620 None:intergenic 35.0%
! AAGGGAGTAATTGTTATTGG+TGG - chr3_2:66275721-66275740 None:intergenic 35.0%
GGGCCCAAATTTAGTATTAA+GGG - chr3_2:66275739-66275758 None:intergenic 35.0%
TGGGCCCAAATTTAGTATTA+AGG - chr3_2:66275740-66275759 None:intergenic 35.0%
AGAACAAAAGTTATGGTGGT+GGG - chr3_2:66275759-66275778 None:intergenic 35.0%
AAGAACAAAAGTTATGGTGG+TGG - chr3_2:66275760-66275779 None:intergenic 35.0%
GCCTAGAAGAACAAAAGTTA+TGG - chr3_2:66275766-66275785 None:intergenic 35.0%
!!! TCGGTGACAATTGTTTTTTG+GGG - chr3_2:66275809-66275828 None:intergenic 35.0%
!!! GTCGGTGACAATTGTTTTTT+GGG - chr3_2:66275810-66275829 None:intergenic 35.0%
!!! TGTCGGTGACAATTGTTTTT+TGG - chr3_2:66275811-66275830 None:intergenic 35.0%
AGTTTCAAGGTCCATATTAG+GGG - chr3_2:66275896-66275915 None:intergenic 35.0%
CTAGTTTCAAGGTCCATATT+AGG - chr3_2:66275898-66275917 None:intergenic 35.0%
AATATGGACCTTGAAACTAG+AGG + chr3_2:66275898-66275917 Msa0418520:intron 35.0%
AGGTCATATTAAGAGGACTA+TGG - chr3_2:66275929-66275948 None:intergenic 35.0%
TTTCTCTTTCTTCATCGCTT+TGG + chr3_2:66276096-66276115 Msa0418520:intron 35.0%
TTCTTTGATCCGTCGAAAAT+GGG + chr3_2:66276246-66276265 Msa0418520:intron 35.0%
TGGAAAAATGGTGTACTCTT+TGG + chr3_2:66276428-66276447 Msa0418520:intron 35.0%
GTAGAGCAGTTTATAGGAAT+AGG - chr3_2:66276577-66276596 None:intergenic 35.0%
GATCAATTGATGGAGAATAG+AGG + chr3_2:66276633-66276652 Msa0418520:intron 35.0%
ATTGATGGAGAATAGAGGAA+TGG + chr3_2:66276638-66276657 Msa0418520:intron 35.0%
AGAATAGAGGAATGGAGAAA+TGG + chr3_2:66276646-66276665 Msa0418520:intron 35.0%
GAATAGAGGAATGGAGAAAT+GGG + chr3_2:66276647-66276666 Msa0418520:intron 35.0%
!! TTGGGTTTTATGATGTTGAG+AGG + chr3_2:66276680-66276699 Msa0418520:intron 35.0%
AAGAAGAACAAATTCTGGTC+TGG + chr3_2:66276764-66276783 Msa0418520:intron 35.0%
!! AGGTCATTTTAAGAGGACTA+TGG + chr3_2:66276946-66276965 Msa0418520:intron 35.0%
!! GGTCATTTTAAGAGGACTAT+GGG + chr3_2:66276947-66276966 Msa0418520:intron 35.0%
GCTTATTCAAAGTGTAGTAG+TGG + chr3_2:66277089-66277108 Msa0418520:intron 35.0%
AACTCACACACATAAATTGG+AGG - chr3_2:66277267-66277286 None:intergenic 35.0%
GGAGAAACAAAAAAAGAGTG+AGG - chr3_2:66277321-66277340 None:intergenic 35.0%
AACGATGTGTGGAATAAAGA+TGG + chr3_2:66277463-66277482 Msa0418520:intron 35.0%
AATGCAATGGTTCCCATAAA+TGG - chr3_2:66277755-66277774 None:intergenic 35.0%
GTTCATTGTAGATAGACTGA+AGG + chr3_2:66278225-66278244 Msa0418520:CDS 35.0%
ATAGTTCATGTGGAAGTCAT+AGG + chr3_2:66278520-66278539 Msa0418520:intron 35.0%
TTAATGTATATTGGCCCAGA+AGG + chr3_2:66278585-66278604 Msa0418520:intron 35.0%
GAATTACATCAACACCTTCT+GGG - chr3_2:66278602-66278621 None:intergenic 35.0%
TGAATTACATCAACACCTTC+TGG - chr3_2:66278603-66278622 None:intergenic 35.0%
TACATGACCGTCTAATAAGA+AGG + chr3_2:66278638-66278657 Msa0418520:intron 35.0%
TTTCTTACCACAAAAGCCAT+TGG - chr3_2:66278727-66278746 None:intergenic 35.0%
TGTTCTCAGATGCAGATATA+TGG + chr3_2:66278802-66278821 Msa0418520:intron 35.0%
GTTGCTTCTTAGTGAATGTT+TGG + chr3_2:66278867-66278886 Msa0418520:intron 35.0%
! AACATGTAGTTAGATGGACT+CGG + chr3_2:66278997-66279016 Msa0418520:intron 35.0%
CGTCAAATGCTATAAATAGG+AGG + chr3_2:66279039-66279058 Msa0418520:intron 35.0%
! CTTCTTAAAATTTTGCCAGC+TGG - chr3_2:66279285-66279304 None:intergenic 35.0%
GTTGATATTGCTCTAACTAG+TGG + chr3_2:66279312-66279331 Msa0418520:CDS 35.0%
GCCAAAAGAATAGCTGATAA+AGG - chr3_2:66279508-66279527 None:intergenic 35.0%
CTCTTCAACCACTAACTCAA+TGG + chr3_2:66273806-66273825 Msa0418520:exon 40.0%
! TGTTAGAGTGTGGTTGGTAT+TGG - chr3_2:66273832-66273851 None:intergenic 40.0%
! TCTGGAATGAGAACAGTAAC+CGG - chr3_2:66273886-66273905 None:intergenic 40.0%
!! ATAGAGATTTGATTTGGCGG+AGG - chr3_2:66274073-66274092 None:intergenic 40.0%
! ATGAGATAACTCTGAAGGAG+AGG - chr3_2:66274234-66274253 None:intergenic 40.0%
ACGAGATGAGATAACTCTGA+AGG - chr3_2:66274239-66274258 None:intergenic 40.0%
ATCAACGGTGGAATTGAACA+CGG - chr3_2:66274366-66274385 None:intergenic 40.0%
!! CTGATTGACTTGTTTCGACA+GGG - chr3_2:66274406-66274425 None:intergenic 40.0%
!! TCTGATTGACTTGTTTCGAC+AGG - chr3_2:66274407-66274426 None:intergenic 40.0%
! TAATACTCCTTTGACTCGTC+CGG - chr3_2:66274462-66274481 None:intergenic 40.0%
AACTTCATCGCTTTAATCGG+AGG + chr3_2:66274494-66274513 Msa0418520:CDS 40.0%
AACACATGAAAAAGCGGAAG+CGG - chr3_2:66274587-66274606 None:intergenic 40.0%
!!! CTTCCGCTTTTTCATGTGTT+TGG + chr3_2:66274587-66274606 Msa0418520:CDS 40.0%
!! TTTTGAAGGGATGTTGAAGG+CGG + chr3_2:66274673-66274692 Msa0418520:CDS 40.0%
TTAGTAAACGCCGTAATCAG+CGG - chr3_2:66274737-66274756 None:intergenic 40.0%
GATTACGGCGTTTACTAAGT+CGG + chr3_2:66274739-66274758 Msa0418520:CDS 40.0%
!! TTAGTTCGATTCGGTTGTTG+GGG + chr3_2:66274783-66274802 Msa0418520:CDS 40.0%
CAAAGCTAAATTCCCCAATG+TGG + chr3_2:66274847-66274866 Msa0418520:CDS 40.0%
ACCTGCACAATTTCCACATT+GGG - chr3_2:66274863-66274882 None:intergenic 40.0%
AACCTGCACAATTTCCACAT+TGG - chr3_2:66274864-66274883 None:intergenic 40.0%
ACTACTGCTATTGTTGCCTT+CGG + chr3_2:66274930-66274949 Msa0418520:intron 40.0%
!! GTTTGTTGTCATTGCCTCAT+TGG + chr3_2:66275302-66275321 Msa0418520:intron 40.0%
GTCACTATATGCATCCAATG+AGG - chr3_2:66275319-66275338 None:intergenic 40.0%
! GAGCCACTCATTTTCTGTTA+AGG + chr3_2:66275562-66275581 Msa0418520:intron 40.0%
!!! CAATTGTTTTTTGGGGGAAC+AGG - chr3_2:66275802-66275821 None:intergenic 40.0%
!!! CGGTGACAATTGTTTTTTGG+GGG - chr3_2:66275808-66275827 None:intergenic 40.0%
CATATTAAGAGGACTATGGC+TGG - chr3_2:66275925-66275944 None:intergenic 40.0%
AGAGAAAGAGAGGAGAGAAA+TGG - chr3_2:66276083-66276102 None:intergenic 40.0%
CGATGAAGAAAGAGAAAGAG+AGG - chr3_2:66276093-66276112 None:intergenic 40.0%
GCGAAAATCATCATGTGCAT+TGG - chr3_2:66276137-66276156 None:intergenic 40.0%
! GCACATGATGATTTTCGCTT+TGG + chr3_2:66276139-66276158 Msa0418520:intron 40.0%
! TGACATCAGGAAGTGTACAT+TGG - chr3_2:66276196-66276215 None:intergenic 40.0%
!!! CTGGTTTTTGGAATGACATC+AGG - chr3_2:66276209-66276228 None:intergenic 40.0%
CTTCTTTGATCCGTCGAAAA+TGG + chr3_2:66276245-66276264 Msa0418520:intron 40.0%
ACTGTACAGGTCATTCATCA+TGG - chr3_2:66276336-66276355 None:intergenic 40.0%
!! AAGCATAGCTTTGATACACC+AGG + chr3_2:66276388-66276407 Msa0418520:intron 40.0%
TTGTCTCTTGTCATAGAGTG+TGG + chr3_2:66276490-66276509 Msa0418520:intron 40.0%
AAGAACAAATTCTGGTCTGG+CGG + chr3_2:66276767-66276786 Msa0418520:intron 40.0%
TGGTTGCAACATGCTATTGA+AGG + chr3_2:66276926-66276945 Msa0418520:intron 40.0%
!! CATTTTAAGAGGACTATGGG+TGG + chr3_2:66276950-66276969 Msa0418520:intron 40.0%
TGGCAAATGCCGAAATTGTT+TGG + chr3_2:66277209-66277228 Msa0418520:intron 40.0%
GGCAAATGCCGAAATTGTTT+GGG + chr3_2:66277210-66277229 Msa0418520:intron 40.0%
ACACATAAATTGGAGGTCTC+GGG - chr3_2:66277260-66277279 None:intergenic 40.0%
CACACATAAATTGGAGGTCT+CGG - chr3_2:66277261-66277280 None:intergenic 40.0%
TTATGTGTGTGAGTTTCACG+TGG + chr3_2:66277272-66277291 Msa0418520:intron 40.0%
AAGATAGTTGACCCTGTTAC+TGG + chr3_2:66277650-66277669 Msa0418520:CDS 40.0%
AGATAGTTGACCCTGTTACT+GGG + chr3_2:66277651-66277670 Msa0418520:CDS 40.0%
ATAATGACTCCCCAGTAACA+GGG - chr3_2:66277664-66277683 None:intergenic 40.0%
AATGGTTCCCATAAATGGAG+AGG - chr3_2:66277750-66277769 None:intergenic 40.0%
TATGTAATAGATGGGCGACA+AGG - chr3_2:66277987-66278006 None:intergenic 40.0%
AGGTTATGTAGGAGATGACA+AGG + chr3_2:66278126-66278145 Msa0418520:intron 40.0%
TGTTGAGACATTGGATTCAG+AGG + chr3_2:66278153-66278172 Msa0418520:CDS 40.0%
GTTGAGACATTGGATTCAGA+GGG + chr3_2:66278154-66278173 Msa0418520:CDS 40.0%
TATGTGCTCTAATTCAGCTG+GGG - chr3_2:66278363-66278382 None:intergenic 40.0%
GTATGTGCTCTAATTCAGCT+GGG - chr3_2:66278364-66278383 None:intergenic 40.0%
AGTATGTGCTCTAATTCAGC+TGG - chr3_2:66278365-66278384 None:intergenic 40.0%
AGCATCAGCAATTTCAGGAT+TGG - chr3_2:66278393-66278412 None:intergenic 40.0%
! GCAAATTCCAATGGCTTTTG+TGG + chr3_2:66278717-66278736 Msa0418520:CDS 40.0%
TTAAGAAAAGCGAGACTCGA+TGG - chr3_2:66278842-66278861 None:intergenic 40.0%
GTTTGGATTGACAGTGAGTT+TGG + chr3_2:66278884-66278903 Msa0418520:intron 40.0%
! ACATGTAGTTAGATGGACTC+GGG + chr3_2:66278998-66279017 Msa0418520:intron 40.0%
CACAAATTGTGAGTCATGGA+GGG - chr3_2:66279128-66279147 None:intergenic 40.0%
GTTGCACAAATTGTGAGTCA+TGG - chr3_2:66279132-66279151 None:intergenic 40.0%
ACACGTCGTATCTTCTTGTA+CGG - chr3_2:66279234-66279253 None:intergenic 40.0%
TCTATTCCAAAATCTCCAGC+TGG + chr3_2:66279267-66279286 Msa0418520:CDS 40.0%
! ATTTTGCCAGCTGGAGATTT+TGG - chr3_2:66279276-66279295 None:intergenic 40.0%
!! GGTATTGGCCATTGAGTTAG+TGG - chr3_2:66273817-66273836 None:intergenic 45.0%
TGACTGTGTTAGAGTGTGGT+TGG - chr3_2:66273838-66273857 None:intergenic 45.0%
AGTGTGACTGTGTTAGAGTG+TGG - chr3_2:66273842-66273861 None:intergenic 45.0%
GAGAACAGTAACCGGTGTTT+GGG - chr3_2:66273878-66273897 None:intergenic 45.0%
TGAGAACAGTAACCGGTGTT+TGG - chr3_2:66273879-66273898 None:intergenic 45.0%
!! AGATTTGATTTGGCGGAGGA+AGG - chr3_2:66274069-66274088 None:intergenic 45.0%
AGAGAGTAGTGTGGGATTGA+AGG - chr3_2:66274103-66274122 None:intergenic 45.0%
AGGAGGGAGAAATAGAGTAC+GGG - chr3_2:66274173-66274192 None:intergenic 45.0%
GAGGAGGGAGAAATAGAGTA+CGG - chr3_2:66274174-66274193 None:intergenic 45.0%
TCTCGTTCGTCTCATCAATC+CGG + chr3_2:66274253-66274272 Msa0418520:CDS 45.0%
! TTTTGTTGCAGTTGAGGACG+TGG - chr3_2:66274291-66274310 None:intergenic 45.0%
! GGGGATTTTTGTTGCAGTTG+AGG - chr3_2:66274297-66274316 None:intergenic 45.0%
AAAATCCCCAAACTACCCCT+TGG + chr3_2:66274308-66274327 Msa0418520:CDS 45.0%
ATCAGTTACGACTGTGCCAA+GGG - chr3_2:66274327-66274346 None:intergenic 45.0%
AATCAGTTACGACTGTGCCA+AGG - chr3_2:66274328-66274347 None:intergenic 45.0%
TTCGGTATCAGTATCAACGG+TGG - chr3_2:66274378-66274397 None:intergenic 45.0%
GATTGAAGATGAACCGCATC+CGG + chr3_2:66274550-66274569 Msa0418520:CDS 45.0%
! TGAAGGCGGTTGAGAAGTAT+AGG + chr3_2:66274687-66274706 Msa0418520:CDS 45.0%
CCTGCACAATTTCCACATTG+GGG - chr3_2:66274862-66274881 None:intergenic 45.0%
! ATGAGTGGCTCGGATTTAAC+TGG - chr3_2:66275553-66275572 None:intergenic 45.0%
AATTAGGGGAGCCCCTAATA+TGG + chr3_2:66275882-66275901 Msa0418520:intron 45.0%
TCATTCCAAAAACCAGCGAG+AGG + chr3_2:66276213-66276232 Msa0418520:intron 45.0%
GGTCATTCATCATGGAGTGT+GGG - chr3_2:66276328-66276347 None:intergenic 45.0%
AGGTCATTCATCATGGAGTG+TGG - chr3_2:66276329-66276348 None:intergenic 45.0%
GGCATAGTTGTACACTGTAC+AGG - chr3_2:66276349-66276368 None:intergenic 45.0%
TGGGTGGACCTCTGTTATTA+AGG + chr3_2:66276966-66276985 Msa0418520:intron 45.0%
ACCATATGTCCTAGCTCAAG+TGG + chr3_2:66277189-66277208 Msa0418520:intron 45.0%
GGATATGGTCTGACTGAAAG+TGG + chr3_2:66277545-66277564 Msa0418520:CDS 45.0%
TATGGTCTGACTGAAAGTGG+AGG + chr3_2:66277548-66277567 Msa0418520:CDS 45.0%
TTTGATGAAGCTAAGCGCCA+CGG + chr3_2:66277593-66277612 Msa0418520:CDS 45.0%
GGGTCGACTAGCAGAAAATA+TGG + chr3_2:66277622-66277641 Msa0418520:CDS 45.0%
GATAGTTGACCCTGTTACTG+GGG + chr3_2:66277652-66277671 Msa0418520:CDS 45.0%
GATAATGACTCCCCAGTAAC+AGG - chr3_2:66277665-66277684 None:intergenic 45.0%
TCATTATCTCCTGGCCAGAA+AGG + chr3_2:66277677-66277696 Msa0418520:CDS 45.0%
CATTATCTCCTGGCCAGAAA+GGG + chr3_2:66277678-66277697 Msa0418520:CDS 45.0%
ATTATCTCCTGGCCAGAAAG+GGG + chr3_2:66277679-66277698 Msa0418520:CDS 45.0%
CGAGGACCAACAATCATGAA+AGG + chr3_2:66277713-66277732 Msa0418520:CDS 45.0%
! GTTTATTATGGTGCCAGTGC+AGG + chr3_2:66278106-66278125 Msa0418520:intron 45.0%
ATCTCCTACATAACCTGCAC+TGG - chr3_2:66278122-66278141 None:intergenic 45.0%
AGACATTGGATTCAGAGGGA+TGG + chr3_2:66278158-66278177 Msa0418520:CDS 45.0%
TCAGGTGATGCATTGTGAAG+TGG + chr3_2:66278270-66278289 Msa0418520:intron 45.0%
GGGGAACCTGAAAAATAGCA+AGG - chr3_2:66278343-66278362 None:intergenic 45.0%
ATGTGCTCTAATTCAGCTGG+GGG - chr3_2:66278362-66278381 None:intergenic 45.0%
ACTGCAGCATCAGCAATTTC+AGG - chr3_2:66278398-66278417 None:intergenic 45.0%
TGCATCTTCATCAGGATACC+TGG - chr3_2:66278695-66278714 None:intergenic 45.0%
AGGTATCCTGATGAAGATGC+AGG + chr3_2:66278694-66278713 Msa0418520:intron 45.0%
GGTATCCTGATGAAGATGCA+GGG + chr3_2:66278695-66278714 Msa0418520:intron 45.0%
ATTTGCCCTGCATCTTCATC+AGG - chr3_2:66278703-66278722 None:intergenic 45.0%
AGATGCAGGGCAAATTCCAA+TGG + chr3_2:66278708-66278727 Msa0418520:CDS 45.0%
AAGCAACATTACTGCAGCTC+AGG + chr3_2:66278753-66278772 Msa0418520:CDS 45.0%
GCACAAATTGTGAGTCATGG+AGG - chr3_2:66279129-66279148 None:intergenic 45.0%
! AGAGAGTGCATAGTCGGTGA+GGG - chr3_2:66273964-66273983 None:intergenic 50.0%
! GAGGAGAGAGAGTGCATAGT+CGG - chr3_2:66273970-66273989 None:intergenic 50.0%
!! TTGATTTGGCGGAGGAAGGT+GGG - chr3_2:66274065-66274084 None:intergenic 50.0%
!! TTTGATTTGGCGGAGGAAGG+TGG - chr3_2:66274066-66274085 None:intergenic 50.0%
TCCCACACTACTCTCTCCAA+AGG + chr3_2:66274107-66274126 Msa0418520:CDS 50.0%
! GCCTTTGGAGAGAGTAGTGT+GGG - chr3_2:66274111-66274130 None:intergenic 50.0%
ATAGAGTACGGGGACGTGTA+TGG - chr3_2:66274162-66274181 None:intergenic 50.0%
GGAGGGAGAAATAGAGTACG+GGG - chr3_2:66274172-66274191 None:intergenic 50.0%
TATTTCTCCCTCCTCTCCCT+CGG + chr3_2:66274179-66274198 Msa0418520:CDS 50.0%
! ACTCTGAAGGAGAGGAGAGT+GGG - chr3_2:66274226-66274245 None:intergenic 50.0%
! AACTCTGAAGGAGAGGAGAG+TGG - chr3_2:66274227-66274246 None:intergenic 50.0%
ACTGTGCCAAGGGGTAGTTT+GGG - chr3_2:66274317-66274336 None:intergenic 50.0%
TCAGTTACGACTGTGCCAAG+GGG - chr3_2:66274326-66274345 None:intergenic 50.0%
TGTTTCGACAGGGCGAAGTT+CGG - chr3_2:66274396-66274415 None:intergenic 50.0%
GCAGCAATCCTCTTCTCATC+CGG + chr3_2:66274431-66274450 Msa0418520:CDS 50.0%
CTCTTCTCATCCGGAACAAC+CGG + chr3_2:66274440-66274459 Msa0418520:CDS 50.0%
! TTTGACTCGTCCGGTTGTTC+CGG - chr3_2:66274453-66274472 None:intergenic 50.0%
CTGAAGCACGCGTATGATGA+CGG + chr3_2:66274527-66274546 Msa0418520:CDS 50.0%
TGAAGCACGCGTATGATGAC+GGG + chr3_2:66274528-66274547 Msa0418520:CDS 50.0%
! ATGGTGAGAGCTTTGGCCAT+GGG + chr3_2:66274620-66274639 Msa0418520:CDS 50.0%
!! AGACGTTGGTGATGATGCAG+AGG + chr3_2:66274645-66274664 Msa0418520:CDS 50.0%
GGCGTTTACTAAGTCGGAGT+TGG + chr3_2:66274745-66274764 Msa0418520:CDS 50.0%
CCCCAATGTGGAAATTGTGC+AGG + chr3_2:66274859-66274878 Msa0418520:CDS 50.0%
TATAGACGAGGACACTCCGA+AGG - chr3_2:66274949-66274968 None:intergenic 50.0%
GGGGCTCCCCTAATTCTAAT+AGG - chr3_2:66275877-66275896 None:intergenic 50.0%
! TGGCTGGACCTCTAGTTTCA+AGG - chr3_2:66275909-66275928 None:intergenic 50.0%
CGACGGATCAAAGAAGAGCA+GGG - chr3_2:66276241-66276260 None:intergenic 50.0%
TCGACGGATCAAAGAAGAGC+AGG - chr3_2:66276242-66276261 None:intergenic 50.0%
CGGTGAAGAGAGAGAAAGAG+AGG + chr3_2:66276787-66276806 Msa0418520:intron 50.0%
GCCACTTGAGCTAGGACATA+TGG - chr3_2:66277193-66277212 None:intergenic 50.0%
CACGGCAGCCCAAACAATTT+CGG - chr3_2:66277221-66277240 None:intergenic 50.0%
GTCTGACTGAAAGTGGAGGA+GGG + chr3_2:66277552-66277571 Msa0418520:CDS 50.0%
TCTGACTGAAAGTGGAGGAG+GGG + chr3_2:66277553-66277572 Msa0418520:CDS 50.0%
ACTGGGGAGTCATTATCTCC+TGG + chr3_2:66277668-66277687 Msa0418520:CDS 50.0%
CAAGGCGACTGTTGAGACAT+TGG + chr3_2:66278144-66278163 Msa0418520:CDS 50.0%
!! CTGCTAATCTTTTGGGGACC+AGG + chr3_2:66278674-66278693 Msa0418520:intron 50.0%
CATTACTGCAGCTCAGGTCA+TGG + chr3_2:66278759-66278778 Msa0418520:CDS 50.0%
! CATGGACTATGTTGCGAAGC+AGG + chr3_2:66278777-66278796 Msa0418520:CDS 50.0%
ACCACCATCGACCCAAACAC+CGG + chr3_2:66273864-66273883 Msa0418520:CDS 55.0%
GTAACCGGTGTTTGGGTCGA+TGG - chr3_2:66273871-66273890 None:intergenic 55.0%
! GAGAGAGTGCATAGTCGGTG+AGG - chr3_2:66273965-66273984 None:intergenic 55.0%
!! GGTGGTGTTGTTGGAAACGG+CGG - chr3_2:66274003-66274022 None:intergenic 55.0%
!! GGCGGTGGTGTTGTTGGAAA+CGG - chr3_2:66274006-66274025 None:intergenic 55.0%
! TGATTTGGCGGAGGAAGGTG+GGG - chr3_2:66274064-66274083 None:intergenic 55.0%
! GGCCTTTGGAGAGAGTAGTG+TGG - chr3_2:66274112-66274131 None:intergenic 55.0%
CGTGTATGGAAGAAGGGACG+AGG - chr3_2:66274148-66274167 None:intergenic 55.0%
CGGGGACGTGTATGGAAGAA+GGG - chr3_2:66274154-66274173 None:intergenic 55.0%
ACGGGGACGTGTATGGAAGA+AGG - chr3_2:66274155-66274174 None:intergenic 55.0%
GACGTGGAGAATGCGATGAC+CGG - chr3_2:66274275-66274294 None:intergenic 55.0%
CTGTGCCAAGGGGTAGTTTG+GGG - chr3_2:66274316-66274335 None:intergenic 55.0%
GACTGTGCCAAGGGGTAGTT+TGG - chr3_2:66274318-66274337 None:intergenic 55.0%
CGGTTGTTCCGGATGAGAAG+AGG - chr3_2:66274442-66274461 None:intergenic 55.0%
GGAACAACCGGACGAGTCAA+AGG + chr3_2:66274452-66274471 Msa0418520:CDS 55.0%
CGTCATCATACGCGTGCTTC+AGG - chr3_2:66274529-66274548 None:intergenic 55.0%
GGAAACAACGACACCGGATG+CGG - chr3_2:66274566-66274585 None:intergenic 55.0%
GGAAGCGGAAACAACGACAC+CGG - chr3_2:66274572-66274591 None:intergenic 55.0%
! GATGGTGAGAGCTTTGGCCA+TGG + chr3_2:66274619-66274638 Msa0418520:CDS 55.0%
! TGGTGAGAGCTTTGGCCATG+GGG + chr3_2:66274621-66274640 Msa0418520:CDS 55.0%
! AGTGTCGCCACCGCTGATTA+CGG + chr3_2:66274724-66274743 Msa0418520:CDS 55.0%
GTAAACGCCGTAATCAGCGG+TGG - chr3_2:66274734-66274753 None:intergenic 55.0%
!! TCGATTCGGTTGTTGGGGAG+CGG + chr3_2:66274788-66274807 Msa0418520:CDS 55.0%
!!! GGGAACCTCTCGCTGGTTTT+TGG - chr3_2:66276221-66276240 None:intergenic 55.0%
! CGGCATTTGCCACTTGAGCT+AGG - chr3_2:66277201-66277220 None:intergenic 55.0%
CGAAATTGTTTGGGCTGCCG+TGG + chr3_2:66277219-66277238 Msa0418520:intron 55.0%
TTTGGGCTGCCGTGGTTTCT+CGG + chr3_2:66277227-66277246 Msa0418520:intron 55.0%
GGTTCGAACCCGAGAAACCA+CGG - chr3_2:66277239-66277258 None:intergenic 55.0%
GGTCTGACTGAAAGTGGAGG+AGG + chr3_2:66277551-66277570 Msa0418520:CDS 55.0%
GGAGGGGCAGCAAGAATGAT+AGG + chr3_2:66277569-66277588 Msa0418520:CDS 55.0%
GCAACCAAAGCTCCCCTTTC+TGG - chr3_2:66277694-66277713 None:intergenic 55.0%
! AAAGGGGAGCTTTGGTTGCG+AGG + chr3_2:66277695-66277714 Msa0418520:CDS 55.0%
GGTGCCAGTGCAGGTTATGT+AGG + chr3_2:66278115-66278134 Msa0418520:intron 55.0%
TCAGAGGGATGGCTGAAGAC+CGG + chr3_2:66278169-66278188 Msa0418520:CDS 55.0%
! GGTGTTTGGGTCGATGGTGG+TGG - chr3_2:66273865-66273884 None:intergenic 60.0%
ACCGGTGTTTGGGTCGATGG+TGG - chr3_2:66273868-66273887 None:intergenic 60.0%
AGAGAGGATCGGAGGGTGGA+GGG - chr3_2:66273941-66273960 None:intergenic 60.0%
GTGAGGGAGAGAGGATCGGA+GGG - chr3_2:66273948-66273967 None:intergenic 60.0%
GTCGGTGAGGGAGAGAGGAT+CGG - chr3_2:66273952-66273971 None:intergenic 60.0%
GCATAGTCGGTGAGGGAGAG+AGG - chr3_2:66273957-66273976 None:intergenic 60.0%
GTTGTTGGAAACGGCGGTGG+TGG - chr3_2:66273997-66274016 None:intergenic 60.0%
!! GGTGTTGTTGGAAACGGCGG+TGG - chr3_2:66274000-66274019 None:intergenic 60.0%
!! GATGAGGGCGGTGGTGTTGT+TGG - chr3_2:66274012-66274031 None:intergenic 60.0%
! GTAAGTGAGGTGGTGGTCGG+TGG - chr3_2:66274042-66274061 None:intergenic 60.0%
! GGGGTAAGTGAGGTGGTGGT+CGG - chr3_2:66274045-66274064 None:intergenic 60.0%
AGGTGGGGTAAGTGAGGTGG+TGG - chr3_2:66274049-66274068 None:intergenic 60.0%
GGAAGGTGGGGTAAGTGAGG+TGG - chr3_2:66274052-66274071 None:intergenic 60.0%
GGAGGAAGGTGGGGTAAGTG+AGG - chr3_2:66274055-66274074 None:intergenic 60.0%
GATGACAGCGACGTGGCCTT+TGG - chr3_2:66274126-66274145 None:intergenic 60.0%
!! GAGTGGGTTAGCAGGAGCGA+TGG - chr3_2:66274210-66274229 None:intergenic 60.0%
!! GGAGAGGAGAGTGGGTTAGC+AGG - chr3_2:66274218-66274237 None:intergenic 60.0%
! GGTGAGAGCTTTGGCCATGG+GGG + chr3_2:66274622-66274641 Msa0418520:CDS 60.0%
TTTGGCCATGGGGGAGACGT+TGG + chr3_2:66274631-66274650 Msa0418520:CDS 60.0%
CATCACCAACGTCTCCCCCA+TGG - chr3_2:66274639-66274658 None:intergenic 60.0%
GTAATCAGCGGTGGCGACAC+TGG - chr3_2:66274725-66274744 None:intergenic 60.0%
ATTCGGTTGTTGGGGAGCGG+TGG + chr3_2:66274791-66274810 Msa0418520:CDS 60.0%
TCCGCAACCTCCTTCCCAAG+CGG - chr3_2:66274821-66274840 None:intergenic 60.0%
AAGAGCAGGGAACCTCTCGC+TGG - chr3_2:66276228-66276247 None:intergenic 60.0%
TTGGGCTGCCGTGGTTTCTC+GGG + chr3_2:66277228-66277247 Msa0418520:intron 60.0%
AGCTAAGCGCCACGGTTCTG+TGG + chr3_2:66277601-66277620 Msa0418520:CDS 60.0%
GCTAAGCGCCACGGTTCTGT+GGG + chr3_2:66277602-66277621 Msa0418520:CDS 60.0%
CTAGTCGACCCACAGAACCG+TGG - chr3_2:66277613-66277632 None:intergenic 60.0%
! CAAAGCTCCCCTTTCTGGCC+AGG - chr3_2:66277689-66277708 None:intergenic 60.0%
CTGGCCAGAAAGGGGAGCTT+TGG + chr3_2:66277687-66277706 Msa0418520:CDS 60.0%
GCGGAGGCTGTGGAAGGTTC+TGG - chr3_2:66273904-66273923 None:intergenic 65.0%
GATTGGGCGGAGGCTGTGGA+AGG - chr3_2:66273910-66273929 None:intergenic 65.0%
GTGGAGGGAGAGGGGCGATT+GGG - chr3_2:66273926-66273945 None:intergenic 65.0%
ATCGGAGGGTGGAGGGAGAG+GGG - chr3_2:66273934-66273953 None:intergenic 65.0%
GATCGGAGGGTGGAGGGAGA+GGG - chr3_2:66273935-66273954 None:intergenic 65.0%
GAGAGAGGATCGGAGGGTGG+AGG - chr3_2:66273942-66273961 None:intergenic 65.0%
AGGGAGAGAGGATCGGAGGG+TGG - chr3_2:66273945-66273964 None:intergenic 65.0%
GGTGAGGGAGAGAGGATCGG+AGG - chr3_2:66273949-66273968 None:intergenic 65.0%
!! AAACGGCGGTGGTGGTGGAG+AGG - chr3_2:66273989-66274008 None:intergenic 65.0%
! GTTGGAAACGGCGGTGGTGG+TGG - chr3_2:66273994-66274013 None:intergenic 65.0%
!! GTCGGTGGCGGCATCGATGA+GGG - chr3_2:66274027-66274046 None:intergenic 65.0%
! AGTGAGGTGGTGGTCGGTGG+CGG - chr3_2:66274039-66274058 None:intergenic 65.0%
GGACGAGGATGACAGCGACG+TGG - chr3_2:66274133-66274152 None:intergenic 65.0%
! AGGAGCGATGGTGACGCCGA+GGG - chr3_2:66274198-66274217 None:intergenic 65.0%
GCCGCTTGGGAAGGAGGTTG+CGG + chr3_2:66274817-66274836 Msa0418520:CDS 65.0%
GAGGGAGAGGGGCGATTGGG+CGG - chr3_2:66273923-66273942 None:intergenic 70.0%
GGTGGAGGGAGAGGGGCGAT+TGG - chr3_2:66273927-66273946 None:intergenic 70.0%
GGATCGGAGGGTGGAGGGAG+AGG - chr3_2:66273936-66273955 None:intergenic 70.0%
!! GGTGGCGGCATCGATGAGGG+CGG - chr3_2:66274024-66274043 None:intergenic 70.0%
!! GGTCGGTGGCGGCATCGATG+AGG - chr3_2:66274028-66274047 None:intergenic 70.0%
GGTGACGCCGAGGGAGAGGA+GGG - chr3_2:66274189-66274208 None:intergenic 70.0%
! TGGTGACGCCGAGGGAGAGG+AGG - chr3_2:66274190-66274209 None:intergenic 70.0%
! CGATGGTGACGCCGAGGGAG+AGG - chr3_2:66274193-66274212 None:intergenic 70.0%
! CAGGAGCGATGGTGACGCCG+AGG - chr3_2:66274199-66274218 None:intergenic 70.0%
TGGTGCGCCGCTTGGGAAGG+AGG + chr3_2:66274811-66274830 Msa0418520:CDS 70.0%
GGGCGATTGGGCGGAGGCTG+TGG - chr3_2:66273914-66273933 None:intergenic 75.0%
GGAGAGGGGCGATTGGGCGG+AGG - chr3_2:66273920-66273939 None:intergenic 75.0%
!! GGCGGCATCGATGAGGGCGG+TGG - chr3_2:66274021-66274040 None:intergenic 75.0%
GGAGCGGTGGTGCGCCGCTT+GGG + chr3_2:66274804-66274823 Msa0418520:CDS 75.0%
CGGTGGTGCGCCGCTTGGGA+AGG + chr3_2:66274808-66274827 Msa0418520:CDS 75.0%
! GGGAGCGGTGGTGCGCCGCT+TGG + chr3_2:66274803-66274822 Msa0418520:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 66273752 66279574 66273752 ID=Msa0418520;Name=Msa0418520
chr3_2 mRNA 66273752 66279574 66273752 ID=Msa0418520-mRNA-1;Parent=Msa0418520;Name=Msa0418520-mRNA-1;_AED=0.12;_eAED=0.12;_QI=73|1|1|1|0.83|0.71|7|203|562
chr3_2 exon 66273752 66274880 66273752 ID=Msa0418520-mRNA-1:exon:15071;Parent=Msa0418520-mRNA-1
chr3_2 exon 66277545 66277734 66277545 ID=Msa0418520-mRNA-1:exon:15072;Parent=Msa0418520-mRNA-1
chr3_2 exon 66278128 66278273 66278128 ID=Msa0418520-mRNA-1:exon:15073;Parent=Msa0418520-mRNA-1
chr3_2 exon 66278356 66278423 66278356 ID=Msa0418520-mRNA-1:exon:15074;Parent=Msa0418520-mRNA-1
chr3_2 exon 66278696 66278798 66278696 ID=Msa0418520-mRNA-1:exon:15075;Parent=Msa0418520-mRNA-1
chr3_2 exon 66279225 66279362 66279225 ID=Msa0418520-mRNA-1:exon:15076;Parent=Msa0418520-mRNA-1
chr3_2 exon 66279384 66279574 66279384 ID=Msa0418520-mRNA-1:exon:15077;Parent=Msa0418520-mRNA-1
chr3_2 five_prime_UTR 66273752 66273824 66273752 ID=Msa0418520-mRNA-1:five_prime_utr;Parent=Msa0418520-mRNA-1
chr3_2 CDS 66273825 66274880 66273825 ID=Msa0418520-mRNA-1:cds;Parent=Msa0418520-mRNA-1
chr3_2 CDS 66277545 66277734 66277545 ID=Msa0418520-mRNA-1:cds;Parent=Msa0418520-mRNA-1
chr3_2 CDS 66278128 66278273 66278128 ID=Msa0418520-mRNA-1:cds;Parent=Msa0418520-mRNA-1
chr3_2 CDS 66278356 66278423 66278356 ID=Msa0418520-mRNA-1:cds;Parent=Msa0418520-mRNA-1
chr3_2 CDS 66278696 66278798 66278696 ID=Msa0418520-mRNA-1:cds;Parent=Msa0418520-mRNA-1
chr3_2 CDS 66279225 66279350 66279225 ID=Msa0418520-mRNA-1:cds;Parent=Msa0418520-mRNA-1
chr3_2 three_prime_UTR 66279351 66279362 66279351 ID=Msa0418520-mRNA-1:three_prime_utr;Parent=Msa0418520-mRNA-1
chr3_2 three_prime_UTR 66279384 66279574 66279384 ID=Msa0418520-mRNA-1:three_prime_utr;Parent=Msa0418520-mRNA-1
Gene Sequence

>Msa0418520

ATGGCCAATACCAACCACACTCTAACACAGTCACACTCCACCACCATCGACCCAAACACCGGTTACTGTTCTCATTCCAGAACCTTCCACAGCCTCCGCCCAATCGCCCCTCTCCCTCCACCCTCCGATCCTCTCTCCCTCACCGACTATGCACTCTCTCTCCTCTCCACCACCACCGCCGTTTCCAACAACACCACCGCCCTCATCGATGCCGCCACCGACCACCACCTCACTTACCCCACCTTCCTCCGCCAAATCAAATCTCTATCTTCATTCCTTCAATCCCACACTACTCTCTCCAAAGGCCACGTCGCTGTCATCCTCGTCCCTTCTTCCATACACGTCCCCGTACTCTATTTCTCCCTCCTCTCCCTCGGCGTCACCATCGCTCCTGCTAACCCACTCTCCTCTCCTTCAGAGTTATCTCATCTCGTTCGTCTCATCAATCCGGTCATCGCATTCTCCACGTCCTCAACTGCAACAAAAATCCCCAAACTACCCCTTGGCACAGTCGTAACTGATTCTCCTTCTTTTCTTTCCGTGTTCAATTCCACCGTTGATACTGATACCGAACTTCGCCCTGTCGAAACAAGTCAATCAGACACAGCAGCAATCCTCTTCTCATCCGGAACAACCGGACGAGTCAAAGGAGTATTATTAACTCACGGTAACTTCATCGCTTTAATCGGAGGATTCTGTTTCCTGAAGCACGCGTATGATGACGGGATTGAAGATGAACCGCATCCGGTGTCGTTGTTTCCGCTTCCGCTTTTTCATGTGTTTGGATTTTTTATGATGGTGAGAGCTTTGGCCATGGGGGAGACGTTGGTGATGATGCAGAGGTTTGATTTTGAAGGGATGTTGAAGGCGGTTGAGAAGTATAGGATTACTTATATGCCAGTGTCGCCACCGCTGATTACGGCGTTTACTAAGTCGGAGTTGGTGAACAAGTATGATATTAGTTCGATTCGGTTGTTGGGGAGCGGTGGTGCGCCGCTTGGGAAGGAGGTTGCGGAGAGCTTCAAAGCTAAATTCCCCAATGTGGAAATTGTGCAGGGATATGGTCTGACTGAAAGTGGAGGAGGGGCAGCAAGAATGATAGGTTTTGATGAAGCTAAGCGCCACGGTTCTGTGGGTCGACTAGCAGAAAATATGGAAGCTAAGATAGTTGACCCTGTTACTGGGGAGTCATTATCTCCTGGCCAGAAAGGGGAGCTTTGGTTGCGAGGACCAACAATCATGAAAGGTTATGTAGGAGATGACAAGGCGACTGTTGAGACATTGGATTCAGAGGGATGGCTGAAGACCGGTGATCTTTGTTATTTTGACTCAGATGGTTATCTGTTCATTGTAGATAGACTGAAGGAATTGATCAAATACAAAGCTTATCAGGTTCCCCCAGCTGAATTAGAGCACATACTTCATACCAATCCTGAAATTGCTGATGCTGCAGTAGTCCCGTATCCTGATGAAGATGCAGGGCAAATTCCAATGGCTTTTGTGGTAAGAAAGCCAGGAAGCAACATTACTGCAGCTCAGGTCATGGACTATGTTGCGAAGCAGGTGACACCGTACAAGAAGATACGACGTGTTTCTTTTATCAACTCTATTCCAAAATCTCCAGCTGGCAAAATTTTAAGAAGAGAATTAGTTGATATTGCTCTAACTAGTGGTTCATCTAAATTGTGA
Protein sequence

>Msa0418520

MANTNHTLTQSHSTTIDPNTGYCSHSRTFHSLRPIAPLPPPSDPLSLTDYALSLLSTTTAVSNNTTALIDAATDHHLTYPTFLRQIKSLSSFLQSHTTLSKGHVAVILVPSSIHVPVLYFSLLSLGVTIAPANPLSSPSELSHLVRLINPVIAFSTSSTATKIPKLPLGTVVTDSPSFLSVFNSTVDTDTELRPVETSQSDTAAILFSSGTTGRVKGVLLTHGNFIALIGGFCFLKHAYDDGIEDEPHPVSLFPLPLFHVFGFFMMVRALAMGETLVMMQRFDFEGMLKAVEKYRITYMPVSPPLITAFTKSELVNKYDISSIRLLGSGGAPLGKEVAESFKAKFPNVEIVQGYGLTESGGGAARMIGFDEAKRHGSVGRLAENMEAKIVDPVTGESLSPGQKGELWLRGPTIMKGYVGDDKATVETLDSEGWLKTGDLCYFDSDGYLFIVDRLKELIKYKAYQVPPAELEHILHTNPEIADAAVVPYPDEDAGQIPMAFVVRKPGSNITAAQVMDYVAKQVTPYKKIRRVSFINSIPKSPAGKILRRELVDIALTSGSSKL*