AlfalfaGEDB | Msa0419530

M. sativa cultivar zhongmu-4 / Msa0419530

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0419530	XP_003601291.2	96.409	362	1	1	5	354	2	363	0.0	727

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0419530	sp\|Q9ZQ31\|STY13_ARATH	40.433	277	157	4	54	330	121	389	3.56e-67	220

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0419530	G7J5Z8	96.409	362	1	1	5	354	2	363	0.0	727

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0419530	Msa0465540	0.917943	2.862788e-86	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0419530	MtrunA17_Chr3g0117811	96.409	362	1	1	5	354	2	363	0.0	727
Msa0419530	MtrunA17_Chr4g0059181	75.510	392	58	4	1	354	1	392	0.0	613
Msa0419530	MtrunA17_Chr6g0450871	74.124	371	76	2	4	354	5	375	0.0	585
Msa0419530	MtrunA17_Chr5g0394681	63.562	365	106	2	6	354	37	390	1.18e-174	490
Msa0419530	MtrunA17_Chr1g0205071	60.383	366	120	4	2	354	29	382	4.88e-162	458
Msa0419530	MtrunA17_Chr3g0090261	42.049	283	150	5	50	329	69	340	3.27e-75	236
Msa0419530	MtrunA17_Chr3g0117731	40.569	281	159	4	51	331	45	317	7.16e-69	219
Msa0419530	MtrunA17_Chr4g0059121	38.567	293	169	5	39	331	37	318	7.34e-69	219
Msa0419530	MtrunA17_Chr4g0075541	35.474	327	201	6	20	346	45	361	3.89e-65	211
Msa0419530	MtrunA17_Chr5g0406251	38.909	275	151	6	56	328	288	547	7.42e-65	215

Showing 1 to 10 of 503 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0419530	AT5G50000.1	73.506	385	71	3	1	354	1	385	0.0	602
Msa0419530	AT3G01490.1	71.250	400	63	3	7	354	12	411	0.0	585
Msa0419530	AT3G22750.1	63.462	364	109	3	4	354	26	378	4.03e-180	504
Msa0419530	AT4G14780.1	63.510	359	108	3	8	354	17	364	1.26e-172	484
Msa0419530	AT5G50000.2	71.924	317	58	3	1	286	1	317	2.48e-170	477
Msa0419530	AT3G63260.1	62.088	364	113	3	8	354	36	391	1.81e-162	460
Msa0419530	AT3G01490.2	68.373	332	53	3	7	286	12	343	2.11e-161	456
Msa0419530	AT3G63260.2	58.784	296	97	3	8	286	36	323	8.08e-118	345
Msa0419530	AT4G31170.7	41.516	277	154	4	54	330	122	390	1.78e-72	231
Msa0419530	AT4G31170.6	41.516	277	154	4	54	330	122	390	1.78e-72	231

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 114 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGATGGAAAAGAATGA+TGG	0.498117	3_2:-67631408	Msa0419530:CDS
AAAGACAGAGAACATGCTGT+TGG	0.575853	3_2:-67629287	Msa0419530:CDS
AAATGATGGAAAAGAATGAT+GGG	0.533794	3_2:-67631407	Msa0419530:CDS
AAATGTAATGAAGAAATGCT+GGG	0.631816	3_2:-67628741	Msa0419530:CDS
AAATGTACCTTAGTTACATT+AGG	0.412990	3_2:+67629907	None:intergenic
AAATGTGATGTATATAGTTT+TGG	0.339439	3_2:-67628974	Msa0419530:CDS
AACCTTGCTGCTGATCAAAA+GGG	0.536519	3_2:+67628633	None:intergenic
AACTCTATTGCTACTACTGG+TGG	0.569622	3_2:-67631288	Msa0419530:CDS
AAGATATACCTGGCGAACAA+CGG	0.618092	3_2:+67628880	None:intergenic
AAGCTGAAATTGCTGGACTC+AGG	0.535768	3_2:-67629975	Msa0419530:CDS

Showing 1 to 10 of 114 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TCTTCTCAGAATGTGATTAT+TGG	+	chr3_2:67628452-67628471	None:intergenic	30.0%
ATTTAACCGGTTACTCAATT+AGG	+	chr3_2:67629032-67629051	None:intergenic	30.0%
AAATGTAGGGATCAACTTAA+TGG	-	chr3_2:67629048-67629067	Msa0419530:intron	30.0%
AACCAACAAGATAACATCAA+CGG	+	chr3_2:67629171-67629190	None:intergenic	30.0%
TGAAAATGTGTTATCCAAGT+TGG	-	chr3_2:67629411-67629430	Msa0419530:intron	30.0%
TATCTACTAACGTAAACACT+TGG	+	chr3_2:67629604-67629623	None:intergenic	30.0%
GTAGCATGTTATTGTTAGAT+TGG	-	chr3_2:67629674-67629693	Msa0419530:intron	30.0%
GAAGGGGACAAAAATTTATA+TGG	-	chr3_2:67629702-67629721	Msa0419530:intron	30.0%
TCTAGTTAAAATGCTGGATT+GGG	-	chr3_2:67629872-67629891	Msa0419530:intron	30.0%
CATTCTTGATCAAAAATAGG+AGG	-	chr3_2:67630365-67630384	Msa0419530:intron	30.0%

Showing 1 to 10 of 212 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	67628356	67631557	67628356	ID=Msa0419530;Name=Msa0419530
chr3_2	mRNA	67628356	67631557	67628356	ID=Msa0419530-mRNA-1;Parent=Msa0419530;Name=Msa0419530-mRNA-1;_AED=0.10;_eAED=0.10;_QI=130\|0.8\|0.83\|1\|1\|1\|6\|245\|354
chr3_2	exon	67628356	67628807	67628356	ID=Msa0419530-mRNA-1:exon:15792;Parent=Msa0419530-mRNA-1
chr3_2	exon	67628889	67629023	67628889	ID=Msa0419530-mRNA-1:exon:15791;Parent=Msa0419530-mRNA-1
chr3_2	exon	67629177	67629351	67629177	ID=Msa0419530-mRNA-1:exon:15790;Parent=Msa0419530-mRNA-1
chr3_2	exon	67629473	67629633	67629473	ID=Msa0419530-mRNA-1:exon:15789;Parent=Msa0419530-mRNA-1
chr3_2	exon	67629915	67630036	67629915	ID=Msa0419530-mRNA-1:exon:15788;Parent=Msa0419530-mRNA-1
chr3_2	exon	67631163	67631557	67631163	ID=Msa0419530-mRNA-1:exon:15787;Parent=Msa0419530-mRNA-1
chr3_2	five_prime_UTR	67631428	67631557	67631428	ID=Msa0419530-mRNA-1:five_prime_utr;Parent=Msa0419530-mRNA-1
chr3_2	CDS	67631163	67631427	67631163	ID=Msa0419530-mRNA-1:cds;Parent=Msa0419530-mRNA-1
chr3_2	CDS	67629915	67630036	67629915	ID=Msa0419530-mRNA-1:cds;Parent=Msa0419530-mRNA-1
chr3_2	CDS	67629473	67629633	67629473	ID=Msa0419530-mRNA-1:cds;Parent=Msa0419530-mRNA-1
chr3_2	CDS	67629177	67629351	67629177	ID=Msa0419530-mRNA-1:cds;Parent=Msa0419530-mRNA-1
chr3_2	CDS	67628889	67629023	67628889	ID=Msa0419530-mRNA-1:cds;Parent=Msa0419530-mRNA-1
chr3_2	CDS	67628601	67628807	67628601	ID=Msa0419530-mRNA-1:cds;Parent=Msa0419530-mRNA-1
chr3_2	three_prime_UTR	67628356	67628600	67628356	ID=Msa0419530-mRNA-1:three_prime_utr;Parent=Msa0419530-mRNA-1

Gene Sequence

>Msa0419530

ATGATGGAAAAGAATGATGGGTTTGTGAGAGCTGATCAAATTGATCTAAAGACCATAGATGAACAACTTGAGAAACACTTCAACAAGGTAAATGATGATTCTTCTCATGATCATTCAAACTCTATTGCTACTACTGGTGGTAATAACATGGAGCAAAGAGAAGAGTGGGAAATTGACCCCTCTAACCTCATCATCAAGAGTGTCTTAGCTCGTGGCACTTTTGGTACTGTTCACCGTGGTTTCTATGATGGCCAAGATGTTGCTGTTAAAATGCTGGATTGGGGTGAAGAAGGTTACCGGACAGAAGCTGAAATTGCTGGACTCAGGTCTGCATTCACGCAAGAAGTCATTGTTTGGCATAAACTTAATCATCCTAATGTAACTAAGATACAAACTGACAGTGGTCTAATTAGCATGCCAAACAATGTCTGCTGTGTGGTTGTTGAGTATCTTCCTGGAGGTGCACTGAAATCATTCTTGATCAAAAATAGGAGGAGGAAGTTAGCATTTAAGGTTGTCATCCAGCTGGCACTTGATATGGCAAGAGGACTGAATTATCTTCACTCTCAGAAGATTGTCCATAGAGATGTAAAGACAGAGAACATGCTGTTGGATAAGTCTCGCACCGTTAAAATTGCTGATTTCGGGGTTGCACGTATTGAAGCGTCGAATCCTAATGACATGACCGGGGAGACTGGTACACTTGGCTACATGGCTCCTGAGGTTCTAAATGGCAACCCCTATAACAGGAAATGTGATGTATATAGTTTTGGCATATGCTTATGGGAAATATATTGTTGTGACATGCCCTATCCTGACCTAAGTTTCTCTGAGATTACTTCAGCCGTTGTTCGCCAGAATGTAAGACCAGAAATACCACGATGTTGTCCAAGTTCCGTGGCAAATGTAATGAAGAAATGCTGGGATGCGAATCCTGATAAGAGACCTGAAATGGATGAGGTAGTTGCCATGCTGGAGGCTATTGACACATCCAAAGGTGGAGGTATGATCCCTTTTGATCAGCAGCAAGGTTGTCTCTGCTTCGGTAAGCGCCGAGGGCCTTGA

Protein sequence

>Msa0419530

MMEKNDGFVRADQIDLKTIDEQLEKHFNKVNDDSSHDHSNSIATTGGNNMEQREEWEIDPSNLIIKSVLARGTFGTVHRGFYDGQDVAVKMLDWGEEGYRTEAEIAGLRSAFTQEVIVWHKLNHPNVTKIQTDSGLISMPNNVCCVVVEYLPGGALKSFLIKNRRRKLAFKVVIQLALDMARGLNYLHSQKIVHRDVKTENMLLDKSRTVKIADFGVARIEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNVRPEIPRCCPSSVANVMKKCWDANPDKRPEMDEVVAMLEAIDTSKGGGMIPFDQQQGCLCFGKRRGP*