Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419900 | XP_003601314.1 | 92.443 | 397 | 9 | 1 | 1 | 397 | 1 | 376 | 0.0 | 719 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419900 | sp|Q5B998|DHOM_EMENI | 40.196 | 306 | 153 | 7 | 99 | 392 | 77 | 364 | 1.46e-54 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419900 | B7FM35 | 92.443 | 397 | 9 | 1 | 1 | 397 | 1 | 376 | 0.0 | 719 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0110970 | Msa0419900 | 0.803193 | 3.918846e-49 | -8.615850e-47 |
| Msa0419900 | Msa0982600 | 0.800403 | 1.465388e-48 | -8.615850e-47 |
| Msa0419900 | Msa1200020 | 0.826656 | 2.407209e-54 | -8.615850e-47 |
| Msa0419900 | Msa1373330 | 0.817320 | 3.506418e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419900 | MtrunA17_Chr3g0118521 | 92.443 | 397 | 9 | 1 | 1 | 397 | 1 | 376 | 0.0 | 719 |
| Msa0419900 | MtrunA17_Chr8g0377971 | 32.911 | 395 | 213 | 10 | 3 | 390 | 557 | 906 | 1.47e-52 | 188 |
| Msa0419900 | MtrunA17_Chr3g0121961 | 32.405 | 395 | 215 | 11 | 3 | 390 | 547 | 896 | 1.38e-51 | 185 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419900 | AT5G21060.1 | 66.162 | 396 | 113 | 1 | 1 | 396 | 1 | 375 | 0.0 | 518 |
| Msa0419900 | AT5G21060.2 | 65.829 | 398 | 113 | 2 | 1 | 396 | 1 | 377 | 0.0 | 513 |
| Msa0419900 | AT5G21060.3 | 65.578 | 398 | 114 | 2 | 1 | 396 | 1 | 377 | 0.0 | 511 |
| Msa0419900 | AT1G31230.1 | 33.125 | 320 | 181 | 6 | 81 | 390 | 605 | 901 | 1.69e-47 | 174 |
| Msa0419900 | AT4G19710.2 | 31.392 | 395 | 219 | 9 | 3 | 390 | 557 | 906 | 1.04e-44 | 166 |
| Msa0419900 | AT4G19710.1 | 30.462 | 325 | 176 | 8 | 3 | 322 | 557 | 836 | 2.65e-28 | 117 |
Find 122 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTGATGATTTGTTGAATA+AGG | 0.191803 | 3_2:-68109756 | Msa0419900:CDS |
| TGCTGATATCGTGGATATTC+AGG | 0.217796 | 3_2:-68105514 | Msa0419900:CDS |
| GGAATCGGAAGGAAAGATTT+TGG | 0.238686 | 3_2:-68109535 | Msa0419900:CDS |
| TACATCAGGCCCCATTTCTT+TGG | 0.243020 | 3_2:+68106207 | None:intergenic |
| ACTTACTCTTAAAGCTTATT+AGG | 0.248365 | 3_2:-68104922 | Msa0419900:three_prime_UTR |
| TTTGAAACAGGCTTTGATTC+TGG | 0.253238 | 3_2:-68106393 | Msa0419900:intron |
| ACTTGGTTGTCGGATTAATA+TGG | 0.269492 | 3_2:-68106363 | Msa0419900:CDS |
| CAGACGAGATTATGCGATTC+AGG | 0.269791 | 3_2:+68107157 | None:intergenic |
| GTGAATTTAAAGAAAATAAA+AGG | 0.273889 | 3_2:-68105459 | Msa0419900:intron |
| ATTTAAACAAGTGGTGGATT+TGG | 0.276380 | 3_2:-68109307 | Msa0419900:CDS |
| GACTATTCCTCTGATTCTAA+TGG | 0.288487 | 3_2:-68110329 | Msa0419900:CDS |
| GATTAATATGGATAGCATTC+AGG | 0.313276 | 3_2:-68106351 | Msa0419900:intron |
| TTTGGGTTGTTGTGTTGTTA+TGG | 0.319434 | 3_2:-68109289 | Msa0419900:CDS |
| GTTGATGATTTGTTGAATAA+GGG | 0.320022 | 3_2:-68109755 | Msa0419900:CDS |
| GATCCAGTTAATCGCATTAT+TGG | 0.322404 | 3_2:-68107132 | Msa0419900:CDS |
| TTTAAACAAGTGGTGGATTT+GGG | 0.330723 | 3_2:-68109306 | Msa0419900:CDS |
| CTTCCAATAATGCGATTAAC+TGG | 0.332630 | 3_2:+68107129 | None:intergenic |
| TTATCAAAACTTGGTGATCT+TGG | 0.334643 | 3_2:-68109677 | Msa0419900:intron |
| AAAATCTTTCCTTCCGATTC+CGG | 0.338690 | 3_2:+68109537 | None:intergenic |
| CTTCCGAAGAATTCTGCTTT+AGG | 0.344032 | 3_2:-68105843 | Msa0419900:CDS |
| GTGAAATATTAAATTAAAGT+TGG | 0.355896 | 3_2:+68110388 | None:intergenic |
| ATGTATGGTTTATGACTTGT+AGG | 0.367114 | 3_2:-68105011 | Msa0419900:three_prime_UTR |
| TTGATTCTGGCTCGAATACT+TGG | 0.368413 | 3_2:-68106380 | Msa0419900:CDS |
| ACATCAGGCCCCATTTCTTT+GGG | 0.369952 | 3_2:+68106208 | None:intergenic |
| CTTACCATTGTAGATGTAAG+AGG | 0.378420 | 3_2:+68109255 | None:intergenic |
| TGTTAGAGCTGCTAAAAGTC+TGG | 0.379369 | 3_2:-68106896 | Msa0419900:CDS |
| TTCAGGATTTATTTCCTTGA+GGG | 0.390450 | 3_2:-68105497 | Msa0419900:exon |
| CGATTCAGGGATGATATAAC+AGG | 0.397208 | 3_2:+68107171 | None:intergenic |
| TTGTGGAAATGTTAGTAGTA+AGG | 0.397603 | 3_2:+68110459 | None:intergenic |
| ACTATTCCTCTGATTCTAAT+GGG | 0.400587 | 3_2:-68110328 | Msa0419900:CDS |
| AAGCTTGTATCCCAAAGAAA+TGG | 0.403295 | 3_2:-68106218 | Msa0419900:CDS |
| ATACTCTTACTAGGGACATT+GGG | 0.405845 | 3_2:-68106964 | Msa0419900:intron |
| AAGTCAAAATCTCAAGTTGA+TGG | 0.407578 | 3_2:-68105224 | Msa0419900:three_prime_UTR |
| GCTTACCTGCAGACTTCATA+TGG | 0.408122 | 3_2:-68105193 | Msa0419900:three_prime_UTR |
| GGACTCTGCTTGAGAGTTGT+GGG | 0.411485 | 3_2:-68109806 | Msa0419900:CDS |
| AGCTTGTATCCCAAAGAAAT+GGG | 0.417096 | 3_2:-68106217 | Msa0419900:CDS |
| TATGGCATTGCTTGTTTCAA+AGG | 0.422034 | 3_2:-68108768 | Msa0419900:intron |
| CTTCCTAAAGCAGAATTCTT+CGG | 0.430180 | 3_2:+68105840 | None:intergenic |
| ATATCCTTGAAATGCCTCAT+AGG | 0.432115 | 3_2:+68104946 | None:intergenic |
| AACCAACCGCTTGTTATTCA+AGG | 0.432651 | 3_2:-68105576 | Msa0419900:CDS |
| CCGCTTGTTATTCAAGGTGC+TGG | 0.439103 | 3_2:-68105570 | Msa0419900:CDS |
| AGGGGAAAAGAGTGCTTCTC+AGG | 0.444167 | 3_2:+68105152 | None:intergenic |
| CCTCTGATTCTAATGGGTTG+TGG | 0.444812 | 3_2:-68110322 | Msa0419900:CDS |
| GGGACTCTGCTTGAGAGTTG+TGG | 0.445062 | 3_2:-68109807 | Msa0419900:CDS |
| TTAATATTTCACAAAAGAAA+AGG | 0.448339 | 3_2:-68110377 | Msa0419900:five_prime_UTR |
| TGCTTGAGAGTTGTGGGAGT+TGG | 0.449369 | 3_2:-68109800 | Msa0419900:CDS |
| AGTATTTGTGCATCCGGAAT+CGG | 0.454900 | 3_2:-68109550 | Msa0419900:CDS |
| TTTGACTTGAAATGTATTCA+GGG | 0.458092 | 3_2:+68105239 | None:intergenic |
| ATGTCAAGTATTTGTGCATC+CGG | 0.460749 | 3_2:-68109556 | Msa0419900:CDS |
| CTAATGGGTTGTGGAGGAGT+TGG | 0.462718 | 3_2:-68110313 | Msa0419900:CDS |
| TGGCTCGAATACTTGGTTGT+CGG | 0.465975 | 3_2:-68106373 | Msa0419900:CDS |
| GATTCCTATGAGGCATTTCA+AGG | 0.467207 | 3_2:-68104950 | Msa0419900:three_prime_UTR |
| TTGTGCTTATATGTGTAAGC+TGG | 0.468221 | 3_2:-68110520 | Msa0419900:five_prime_UTR |
| GGCGACTCTTTATCAAAACT+TGG | 0.468528 | 3_2:-68109686 | Msa0419900:CDS |
| TGGAATGGATGTTGCTAGAA+AGG | 0.469655 | 3_2:-68106714 | Msa0419900:intron |
| CTGAATCGCATAATCTCGTC+TGG | 0.472188 | 3_2:-68107156 | Msa0419900:CDS |
| GTTATTCAAGGTGCTGGAGC+TGG | 0.472892 | 3_2:-68105564 | Msa0419900:CDS |
| TCTGCTTTAGGAAGATTAAG+AGG | 0.483155 | 3_2:-68105831 | Msa0419900:CDS |
| TGTGGAAATGTTAGTAGTAA+GGG | 0.490580 | 3_2:+68110460 | None:intergenic |
| CTTACACATATAAGCACAAA+GGG | 0.491004 | 3_2:+68110524 | None:intergenic |
| CGCATTATTGGAAGTTTGAG+TGG | 0.502100 | 3_2:-68107120 | Msa0419900:intron |
| CGATATGTCTGTGTCATTGA+GGG | 0.505166 | 3_2:-68106088 | Msa0419900:CDS |
| GTTAGAGCTGCTAAAAGTCT+GGG | 0.506073 | 3_2:-68106895 | Msa0419900:CDS |
| TCATCAACAGTCATTACATC+AGG | 0.509894 | 3_2:+68106193 | None:intergenic |
| GTGAGGATAGAGAAAATGTA+TGG | 0.519715 | 3_2:-68105026 | Msa0419900:three_prime_UTR |
| GTTGAGAAGGCAGCTTCAAA+CGG | 0.522134 | 3_2:-68106121 | Msa0419900:CDS |
| CCGTTCTCTTCACTCTTCAC+AGG | 0.525497 | 3_2:-68110260 | Msa0419900:intron |
| TCCATCCATATGAAGTCTGC+AGG | 0.525603 | 3_2:+68105188 | None:intergenic |
| TGCTAGCTCTGACACTATAG+TGG | 0.526126 | 3_2:-68109331 | Msa0419900:CDS |
| CACTTACAGTTGACTCGTGT+CGG | 0.530019 | 3_2:+68108526 | None:intergenic |
| GGAAATGACACGACTGCAGC+TGG | 0.530672 | 3_2:-68105543 | Msa0419900:CDS |
| CATACTCTTACTAGGGACAT+TGG | 0.534273 | 3_2:-68106965 | Msa0419900:intron |
| CAGACATTAGAATGTTCTTG+AGG | 0.536414 | 3_2:+68105132 | None:intergenic |
| AGACGAGATTATGCGATTCA+GGG | 0.536705 | 3_2:+68107158 | None:intergenic |
| TTGGAGATCGCATCTCAACT+TGG | 0.536979 | 3_2:-68109516 | Msa0419900:CDS |
| GCAGATCCGCGTGACGACCT+TGG | 0.541256 | 3_2:-68106737 | Msa0419900:intron |
| AGTTGGTGATAGTAAATCTC+TGG | 0.543805 | 3_2:-68109783 | Msa0419900:CDS |
| GCGATATGTCTGTGTCATTG+AGG | 0.544430 | 3_2:-68106089 | Msa0419900:CDS |
| TTGATGATTTGTTGAATAAG+GGG | 0.549072 | 3_2:-68109754 | Msa0419900:CDS |
| ATAATGGAGGAAGCAGTTTG+TGG | 0.552391 | 3_2:+68110442 | None:intergenic |
| CACCTTGAATAACAAGCGGT+TGG | 0.553741 | 3_2:+68105574 | None:intergenic |
| TATTCAAGAGAGAGTTGAGA+AGG | 0.555589 | 3_2:-68106134 | Msa0419900:CDS |
| ACCTGCAGACTTCATATGGA+TGG | 0.556592 | 3_2:-68105189 | Msa0419900:three_prime_UTR |
| GCGTGACGACCTTGGTGGAA+TGG | 0.557142 | 3_2:-68106729 | Msa0419900:CDS |
| ATTAAGAGGAAGTGATAATG+TGG | 0.560797 | 3_2:-68105817 | Msa0419900:intron |
| AACGGCATGAGACAATGTGT+TGG | 0.562382 | 3_2:+68110278 | None:intergenic |
| ATTCAGGATTTATTTCCTTG+AGG | 0.563190 | 3_2:-68105498 | Msa0419900:exon |
| AGACATTAGAATGTTCTTGA+GGG | 0.563868 | 3_2:+68105133 | None:intergenic |
| AGTGGTATTTAAACAAGTGG+TGG | 0.565038 | 3_2:-68109313 | Msa0419900:CDS |
| TTTATGAAATGGAATAATGG+AGG | 0.565368 | 3_2:+68110429 | None:intergenic |
| TTCAGAACATATATCAATGT+AGG | 0.575977 | 3_2:-68105048 | Msa0419900:three_prime_UTR |
| GAACTTTGTCGGCTCAAGCA+TGG | 0.577642 | 3_2:-68109710 | Msa0419900:CDS |
| CTGATTCTAATGGGTTGTGG+AGG | 0.585102 | 3_2:-68110319 | Msa0419900:CDS |
| AACATATATCAATGTAGGTG+AGG | 0.586653 | 3_2:-68105043 | Msa0419900:three_prime_UTR |
| GATCCGCGTGACGACCTTGG+TGG | 0.590453 | 3_2:-68106734 | Msa0419900:CDS |
| AGCTACTGCAGATTCCTATG+AGG | 0.599853 | 3_2:-68104960 | Msa0419900:three_prime_UTR |
| CCACAACCCATTAGAATCAG+AGG | 0.599933 | 3_2:+68110322 | None:intergenic |
| TATAGTGGTATTTAAACAAG+TGG | 0.603886 | 3_2:-68109316 | Msa0419900:CDS |
| GACATTAGAATGTTCTTGAG+GGG | 0.604387 | 3_2:+68105134 | None:intergenic |
| TCTGTGTCATTGAGGGCCCA+AGG | 0.607852 | 3_2:-68106081 | Msa0419900:intron |
| AGTCTGGGGTACACTGAACC+AGG | 0.614299 | 3_2:-68106880 | Msa0419900:intron |
| GCTCTAACAACTTGGCTCAG+TGG | 0.629836 | 3_2:+68106910 | None:intergenic |
| TACTCTTACTAGGGACATTG+GGG | 0.630998 | 3_2:-68106963 | Msa0419900:intron |
| GCTAGCAGTGCAATCGACAA+AGG | 0.639455 | 3_2:+68109347 | None:intergenic |
| AAAGCCTCTTACATCTACAA+TGG | 0.649979 | 3_2:-68109259 | Msa0419900:intron |
| GTAATGAGTGAGGTTGAAGA+CGG | 0.653533 | 3_2:-68106937 | Msa0419900:CDS |
| ATGAGACAATGTGTTGGAGA+AGG | 0.653825 | 3_2:+68110284 | None:intergenic |
| TGGTGATAGTAAATCTCTGG+TGG | 0.664687 | 3_2:-68109780 | Msa0419900:CDS |
| GCTTACACATATAAGCACAA+AGG | 0.665403 | 3_2:+68110523 | None:intergenic |
| TGGTGTCCTTGCTGATATCG+TGG | 0.665644 | 3_2:-68105523 | Msa0419900:CDS |
| GACAGTTGGAAGTATACACT+CGG | 0.666254 | 3_2:-68105608 | Msa0419900:intron |
| CCAGCACCTTGAATAACAAG+CGG | 0.667197 | 3_2:+68105570 | None:intergenic |
| CTTTGTCGGCTCAAGCATGG+TGG | 0.682934 | 3_2:-68109707 | Msa0419900:CDS |
| TTAGAGCTGCTAAAAGTCTG+GGG | 0.687412 | 3_2:-68106894 | Msa0419900:CDS |
| GAATATCCACGATATCAGCA+AGG | 0.690515 | 3_2:+68105517 | None:intergenic |
| GCTTGTATCCCAAAGAAATG+GGG | 0.691217 | 3_2:-68106216 | Msa0419900:CDS |
| TTTGTGCATCCGGAATCGGA+AGG | 0.691255 | 3_2:-68109546 | Msa0419900:CDS |
| GACTCGTGTCGGATACGACG+TGG | 0.702791 | 3_2:+68108537 | None:intergenic |
| ATTCCACCAAGGTCGTCACG+CGG | 0.703419 | 3_2:+68106731 | None:intergenic |
| ATTGGGGTACGTAATGAGTG+AGG | 0.705523 | 3_2:-68106947 | Msa0419900:CDS |
| TAGCAACATCCATTCCACCA+AGG | 0.709532 | 3_2:+68106720 | None:intergenic |
| CCTGTGAAGAGTGAAGAGAA+CGG | 0.755715 | 3_2:+68110260 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTTTTTTTATTA+CGG | - | chr3_2:68105537-68105556 | Msa0419900:CDS | 0.0% |
| !!! | TTTTTATTTTTTTTATTACG+GGG | - | chr3_2:68105539-68105558 | Msa0419900:CDS | 10.0% |
| !!! | TATAATGAAACTTTATTTTA+GGG | + | chr3_2:68106821-68106840 | None:intergenic | 10.0% |
| !!! | TTATAATGAAACTTTATTTT+AGG | + | chr3_2:68106822-68106841 | None:intergenic | 10.0% |
| !!! | AAAATTTACTTTTAAATTTG+TGG | - | chr3_2:68108726-68108745 | Msa0419900:intron | 10.0% |
| !!! | TTTTTGTTAAAATTTTGATT+TGG | - | chr3_2:68110124-68110143 | Msa0419900:intron | 10.0% |
| !!! | ATTTTATGGATTTTATGAAA+TGG | + | chr3_2:68105095-68105114 | None:intergenic | 15.0% |
| !! | GTGAAATATTAAATTAAAGT+TGG | + | chr3_2:68105125-68105144 | None:intergenic | 15.0% |
| !! | TTAATATTTCACAAAAGAAA+AGG | - | chr3_2:68105133-68105152 | Msa0419900:three_prime_UTR | 15.0% |
| !!! | TTGAATTTTGATTGTTATTT+TGG | - | chr3_2:68105674-68105693 | Msa0419900:intron | 15.0% |
| !! | TTTCATAATAATTGTTGAAA+TGG | - | chr3_2:68106291-68106310 | Msa0419900:intron | 15.0% |
| !! | TTCATAATAATTGTTGAAAT+GGG | - | chr3_2:68106292-68106311 | Msa0419900:intron | 15.0% |
| !! | TGATTAAAGATTTATTAACA+AGG | - | chr3_2:68107028-68107047 | Msa0419900:intron | 15.0% |
| !!! | AGTAAGAATTTTCAATAAAA+AGG | - | chr3_2:68107102-68107121 | Msa0419900:intron | 15.0% |
| !! | TAAAATCAAAATCAGAAAAA+AGG | - | chr3_2:68107475-68107494 | Msa0419900:intron | 15.0% |
| !! | AAAATCAAAATCAGAAAAAA+GGG | - | chr3_2:68107476-68107495 | Msa0419900:intron | 15.0% |
| !! | TTAAAATAGAACTCATATAT+TGG | + | chr3_2:68107504-68107523 | None:intergenic | 15.0% |
| !!! | TATTATTTTTTTAACAGAAG+TGG | + | chr3_2:68107970-68107989 | None:intergenic | 15.0% |
| !!! | ACAAAATTTATTACTTTTCT+TGG | - | chr3_2:68108146-68108165 | Msa0419900:intron | 15.0% |
| !! | TTATCAATTGTAGTTTAAAA+TGG | - | chr3_2:68109053-68109072 | Msa0419900:intron | 15.0% |
| !! | GAAGTTATAATTGATATAAA+AGG | + | chr3_2:68109611-68109630 | None:intergenic | 15.0% |
| !!! | TTATTTTATTTTCTCGTTTT+TGG | - | chr3_2:68109721-68109740 | Msa0419900:CDS | 15.0% |
| !! | GTGAATTTAAAGAAAATAAA+AGG | - | chr3_2:68110051-68110070 | Msa0419900:intron | 15.0% |
| !!! | ATTATTATTTTTAAGTTGGT+TGG | - | chr3_2:68110431-68110450 | Msa0419900:five_prime_UTR | 15.0% |
| !!! | GATTTTATGAAATGGAATAA+TGG | + | chr3_2:68105087-68105106 | None:intergenic | 20.0% |
| !!! | AAGTTGGAAATTGAATTTTA+TGG | + | chr3_2:68105109-68105128 | None:intergenic | 20.0% |
| !!! | ATTTTGATTGTTATTTTGGT+TGG | - | chr3_2:68105678-68105697 | Msa0419900:intron | 20.0% |
| !! | ACTATTTGATTGTAATTGAA+AGG | - | chr3_2:68105928-68105947 | Msa0419900:intron | 20.0% |
| !!! | ATATCTGAAATTTTCATTGT+AGG | - | chr3_2:68106135-68106154 | Msa0419900:CDS | 20.0% |
| !! | TCCTTAAACTTTATAATGTA+TGG | - | chr3_2:68106487-68106506 | Msa0419900:intron | 20.0% |
| !! | TCCATACATTATAAAGTTTA+AGG | + | chr3_2:68106491-68106510 | None:intergenic | 20.0% |
| !! | TATATCAACAGAAAATGAAA+TGG | + | chr3_2:68106525-68106544 | None:intergenic | 20.0% |
| !!! | ATATCATGTTTTTTAAGCTT+CGG | - | chr3_2:68106566-68106585 | Msa0419900:intron | 20.0% |
| !! | ATTCTATCAAGTAAAAGATA+AGG | - | chr3_2:68106844-68106863 | Msa0419900:intron | 20.0% |
| !! | ATAAATCTTTAATCATGTTG+AGG | + | chr3_2:68107023-68107042 | None:intergenic | 20.0% |
| !! | TCTATGCAATAAAAACATAA+GGG | + | chr3_2:68108051-68108070 | None:intergenic | 20.0% |
| !! | TAAATAGTTACTGGTATTAT+TGG | - | chr3_2:68108093-68108112 | Msa0419900:intron | 20.0% |
| !! | TTTCCTATCAAAATCTAATT+TGG | - | chr3_2:68108231-68108250 | Msa0419900:intron | 20.0% |
| !!! | TTTGAAATTGCATTATTCAA+TGG | - | chr3_2:68108668-68108687 | Msa0419900:intron | 20.0% |
| !! | TTGAAATTGCATTATTCAAT+GGG | - | chr3_2:68108669-68108688 | Msa0419900:intron | 20.0% |
| !!! | AATACAAACTTTCTGTTTTT+TGG | - | chr3_2:68109087-68109106 | Msa0419900:intron | 20.0% |
| !!! | ATACAAACTTTCTGTTTTTT+GGG | - | chr3_2:68109088-68109107 | Msa0419900:intron | 20.0% |
| !! | AAATACGATAAATAAAGGAA+AGG | + | chr3_2:68109223-68109242 | None:intergenic | 20.0% |
| !! | GGAAAAAATACGATAAATAA+AGG | + | chr3_2:68109228-68109247 | None:intergenic | 20.0% |
| !! | AAAATGACTAACATAACATA+GGG | + | chr3_2:68109249-68109268 | None:intergenic | 20.0% |
| !! | TAAAATGACTAACATAACAT+AGG | + | chr3_2:68109250-68109269 | None:intergenic | 20.0% |
| !!! | GTTATGTTAGTCATTTTATA+TGG | - | chr3_2:68109252-68109271 | Msa0419900:intron | 20.0% |
| !! | AAATCAACATTGAAATTGAT+AGG | + | chr3_2:68110158-68110177 | None:intergenic | 20.0% |
| !! | TTATAATATAATTGCGTTGA+TGG | - | chr3_2:68110209-68110228 | Msa0419900:intron | 20.0% |
| ! | TTTATGAAATGGAATAATGG+AGG | + | chr3_2:68105084-68105103 | None:intergenic | 25.0% |
| ! | TTTGATACTAGAAGACAAAT+GGG | + | chr3_2:68105368-68105387 | None:intergenic | 25.0% |
| !! | TTTTGATACTAGAAGACAAA+TGG | + | chr3_2:68105369-68105388 | None:intergenic | 25.0% |
| ! | TTTGATACTAAAACGCAAAT+GGG | + | chr3_2:68105439-68105458 | None:intergenic | 25.0% |
| !! | TTTTGATACTAAAACGCAAA+TGG | + | chr3_2:68105440-68105459 | None:intergenic | 25.0% |
| ! | AAAAGATCTACTAGTCAAAT+GGG | + | chr3_2:68105510-68105529 | None:intergenic | 25.0% |
| ! | AAAAAGATCTACTAGTCAAA+TGG | + | chr3_2:68105511-68105530 | None:intergenic | 25.0% |
| ! | AATAGCTAGATGAATTTCTA+AGG | + | chr3_2:68105589-68105608 | None:intergenic | 25.0% |
| !!! | TTCAAAAGCACTCAATTTTA+TGG | + | chr3_2:68105659-68105678 | None:intergenic | 25.0% |
| !!! | GTTGATGATTTGTTGAATAA+GGG | - | chr3_2:68105755-68105774 | Msa0419900:intron | 25.0% |
| !!! | TTGATGATTTGTTGAATAAG+GGG | - | chr3_2:68105756-68105775 | Msa0419900:intron | 25.0% |
| !!! | GTTTTTTGTTAGAACTTTGT+CGG | - | chr3_2:68105789-68105808 | Msa0419900:intron | 25.0% |
| !! | TGAAATTTTCATTGTAGGTT+TGG | - | chr3_2:68106140-68106159 | Msa0419900:CDS | 25.0% |
| ! | TATAGTGGTATTTAAACAAG+TGG | - | chr3_2:68106194-68106213 | Msa0419900:CDS | 25.0% |
| ! | ATAATAATTGTTGAAATGGG+AGG | - | chr3_2:68106295-68106314 | Msa0419900:intron | 25.0% |
| ! | AAACATGACCATAAATTAGA+GGG | + | chr3_2:68106442-68106461 | None:intergenic | 25.0% |
| ! | TAAACATGACCATAAATTAG+AGG | + | chr3_2:68106443-68106462 | None:intergenic | 25.0% |
| ! | ATTTATGGTCATGTTTAGTT+TGG | - | chr3_2:68106446-68106465 | Msa0419900:intron | 25.0% |
| !! | ATAAACTGCAAATTTGTTTC+TGG | - | chr3_2:68107128-68107147 | Msa0419900:CDS | 25.0% |
| ! | TCTGTATTTAACTGTAATCT+CGG | - | chr3_2:68107173-68107192 | Msa0419900:CDS | 25.0% |
| ! | TTGTTGTATGGATCTATAAT+CGG | - | chr3_2:68107230-68107249 | Msa0419900:intron | 25.0% |
| ! | AATTCTTCCATTAAAGAACT+TGG | - | chr3_2:68107350-68107369 | Msa0419900:intron | 25.0% |
| ! | CATAATACCAAGTTCTTTAA+TGG | + | chr3_2:68107360-68107379 | None:intergenic | 25.0% |
| !! | GAAGGAAATTTTTGAATTTG+AGG | - | chr3_2:68107401-68107420 | Msa0419900:intron | 25.0% |
| ! | CTGATGCATATATACAAATA+TGG | - | chr3_2:68107447-68107466 | Msa0419900:intron | 25.0% |
| ! | AAAATCTAAATGCATGTTCT+CGG | - | chr3_2:68107633-68107652 | Msa0419900:intron | 25.0% |
| ! | CATTATATCTGTTTACTTTC+TGG | - | chr3_2:68107716-68107735 | Msa0419900:intron | 25.0% |
| ! | CTCTATGCAATAAAAACATA+AGG | + | chr3_2:68108052-68108071 | None:intergenic | 25.0% |
| !!! | TATGTTTTTATTGCATAGAG+AGG | - | chr3_2:68108052-68108071 | Msa0419900:intron | 25.0% |
| ! | ATGAGATGATAAATAGTTAC+TGG | - | chr3_2:68108084-68108103 | Msa0419900:intron | 25.0% |
| !!! | AAGCCAAATTAGATTTTGAT+AGG | + | chr3_2:68108237-68108256 | None:intergenic | 25.0% |
| !! | AAAATCTAATTTGGCTTCAT+GGG | - | chr3_2:68108240-68108259 | Msa0419900:intron | 25.0% |
| !! | TTGAAAAATCATGGATTTTG+AGG | - | chr3_2:68108267-68108286 | Msa0419900:intron | 25.0% |
| !!! | TCTGGTTGTGATATTTTTAA+AGG | - | chr3_2:68108302-68108321 | Msa0419900:intron | 25.0% |
| !!! | GTTGTGATATTTTTAAAGGT+AGG | - | chr3_2:68108306-68108325 | Msa0419900:intron | 25.0% |
| !! | AGGTATTGTTATGTTGATAT+TGG | - | chr3_2:68108511-68108530 | Msa0419900:intron | 25.0% |
| ! | AATTGAACACAGAATATGAA+GGG | + | chr3_2:68109469-68109488 | None:intergenic | 25.0% |
| ! | GATTGAATTGAACATGAAAA+AGG | + | chr3_2:68109532-68109551 | None:intergenic | 25.0% |
| ! | TTCAATCTTTGCATATGATT+TGG | - | chr3_2:68109545-68109564 | Msa0419900:CDS | 25.0% |
| !!! | GGCGTTAAGTATTTTTAATT+AGG | - | chr3_2:68109742-68109761 | Msa0419900:CDS | 25.0% |
| ! | ATTTGCATCAACATACAAAA+TGG | + | chr3_2:68109882-68109901 | None:intergenic | 25.0% |
| !!! | TTTGACTTGAAATGTATTCA+GGG | + | chr3_2:68110274-68110293 | None:intergenic | 25.0% |
| !!! | TTTTGACTTGAAATGTATTC+AGG | + | chr3_2:68110275-68110294 | None:intergenic | 25.0% |
| !!! | ATTCTAATGTCTGTTTTTGA+TGG | - | chr3_2:68110388-68110407 | Msa0419900:five_prime_UTR | 25.0% |
| ! | TTCAGAACATATATCAATGT+AGG | - | chr3_2:68110462-68110481 | Msa0419900:five_prime_UTR | 25.0% |
| ! | ACTTACTCTTAAAGCTTATT+AGG | - | chr3_2:68110588-68110607 | Msa0419900:five_prime_UTR | 25.0% |
| CTTACACATATAAGCACAAA+GGG | + | chr3_2:68104989-68105008 | None:intergenic | 30.0% | |
| TGTGGAAATGTTAGTAGTAA+GGG | + | chr3_2:68105053-68105072 | None:intergenic | 30.0% | |
| TTGTGGAAATGTTAGTAGTA+AGG | + | chr3_2:68105054-68105073 | None:intergenic | 30.0% | |
| ACTATTCCTCTGATTCTAAT+GGG | - | chr3_2:68105182-68105201 | Msa0419900:three_prime_UTR | 30.0% | |
| ! | TGATCATTTTCTGACATTGT+TGG | - | chr3_2:68105624-68105643 | Msa0419900:intron | 30.0% |
| !! | CGTTGATGATTTGTTGAATA+AGG | - | chr3_2:68105754-68105773 | Msa0419900:intron | 30.0% |
| ! | TTATCAAAACTTGGTGATCT+TGG | - | chr3_2:68105833-68105852 | Msa0419900:CDS | 30.0% |
| !! | ACACAGTTTTGCTCTTATTT+AGG | + | chr3_2:68106092-68106111 | None:intergenic | 30.0% |
| GTGTGTATGAAAAATTGCTT+AGG | - | chr3_2:68106108-68106127 | Msa0419900:CDS | 30.0% | |
| !! | ATTTAAACAAGTGGTGGATT+TGG | - | chr3_2:68106203-68106222 | Msa0419900:CDS | 30.0% |
| !! | TTTAAACAAGTGGTGGATTT+GGG | - | chr3_2:68106204-68106223 | Msa0419900:CDS | 30.0% |
| AATTTACCCCCTCTAATTTA+TGG | - | chr3_2:68106431-68106450 | Msa0419900:intron | 30.0% | |
| AACATGACCATAAATTAGAG+GGG | + | chr3_2:68106441-68106460 | None:intergenic | 30.0% | |
| ! | TTTTCAGCGAATTTCAAGAT+TGG | + | chr3_2:68106633-68106652 | None:intergenic | 30.0% |
| TGTGCATGTCAAAAAGTTTA+TGG | - | chr3_2:68106724-68106743 | Msa0419900:CDS | 30.0% | |
| ACAATAGAACAAAGTAACGT+GGG | + | chr3_2:68106881-68106900 | None:intergenic | 30.0% | |
| AACAATAGAACAAAGTAACG+TGG | + | chr3_2:68106882-68106901 | None:intergenic | 30.0% | |
| AACAATAACTCTCTCTTACA+TGG | - | chr3_2:68106918-68106937 | Msa0419900:CDS | 30.0% | |
| GACTGTATTAAAAGAAAGTG+TGG | - | chr3_2:68107067-68107086 | Msa0419900:intron | 30.0% | |
| !! | GTTTCTGGAATTTCTTTGAT+TGG | - | chr3_2:68107143-68107162 | Msa0419900:CDS | 30.0% |
| AACAAATCCAGAACTTATAC+AGG | + | chr3_2:68107215-68107234 | None:intergenic | 30.0% | |
| !! | TAAGTTCTGGATTTGTTGTA+TGG | - | chr3_2:68107218-68107237 | Msa0419900:intron | 30.0% |
| ATTTCATTCCTTGTCTACTA+AGG | + | chr3_2:68107279-68107298 | None:intergenic | 30.0% | |
| TAGACAAGGAATGAAATCTA+GGG | - | chr3_2:68107282-68107301 | Msa0419900:intron | 30.0% | |
| GTCATCTTCATCTAGAAATA+AGG | - | chr3_2:68107379-68107398 | Msa0419900:intron | 30.0% | |
| TCTTCATCTAGAAATAAGGA+AGG | - | chr3_2:68107383-68107402 | Msa0419900:intron | 30.0% | |
| GTTTAAATCAACTCTTTCCT+CGG | - | chr3_2:68107763-68107782 | Msa0419900:intron | 30.0% | |
| AGTGAAATCTAATACTTCCT+CGG | - | chr3_2:68107905-68107924 | Msa0419900:intron | 30.0% | |
| !! | CTTTAAAGCGACAACTAAAA+AGG | - | chr3_2:68108188-68108207 | Msa0419900:intron | 30.0% |
| ! | CAAAATCTAATTTGGCTTCA+TGG | - | chr3_2:68108239-68108258 | Msa0419900:intron | 30.0% |
| ! | AAATCTAATTTGGCTTCATG+GGG | - | chr3_2:68108241-68108260 | Msa0419900:intron | 30.0% |
| ATGGGGATATTGAAAAATCA+TGG | - | chr3_2:68108258-68108277 | Msa0419900:intron | 30.0% | |
| !! | ATATTTTTAAAGGTAGGTGC+TGG | - | chr3_2:68108312-68108331 | Msa0419900:intron | 30.0% |
| !! | TATTTTTAAAGGTAGGTGCT+GGG | - | chr3_2:68108313-68108332 | Msa0419900:intron | 30.0% |
| CTTGATCACATATTCATTGT+TGG | - | chr3_2:68108468-68108487 | Msa0419900:intron | 30.0% | |
| TTATTCTGCATACTCTTACT+AGG | - | chr3_2:68108537-68108556 | Msa0419900:CDS | 30.0% | |
| TATTCTGCATACTCTTACTA+GGG | - | chr3_2:68108538-68108557 | Msa0419900:CDS | 30.0% | |
| ATTGTGTAGCAATTAGCAAA+TGG | + | chr3_2:68108697-68108716 | None:intergenic | 30.0% | |
| !! | AACGCATAAATTTGCTAACA+CGG | + | chr3_2:68108907-68108926 | None:intergenic | 30.0% |
| TGTTAGCAAATTTATGCGTT+GGG | - | chr3_2:68108907-68108926 | Msa0419900:intron | 30.0% | |
| !! | CAGTTTCGAAGTTTTGATAT+TGG | - | chr3_2:68108953-68108972 | Msa0419900:intron | 30.0% |
| TAGTTGACCATTTCTTATCA+CGG | - | chr3_2:68108991-68109010 | Msa0419900:intron | 30.0% | |
| ! | TTTGGGCTAATATTTGAAAC+AGG | - | chr3_2:68109105-68109124 | Msa0419900:intron | 30.0% |
| GATTAATATGGATAGCATTC+AGG | - | chr3_2:68109159-68109178 | Msa0419900:intron | 30.0% | |
| ACGATAAATAAAGGAAAGGT+AGG | + | chr3_2:68109219-68109238 | None:intergenic | 30.0% | |
| GAATTGAACACAGAATATGA+AGG | + | chr3_2:68109470-68109489 | None:intergenic | 30.0% | |
| !! | ATAACTTCTCTCCTTTTTCA+AGG | - | chr3_2:68109623-68109642 | Msa0419900:intron | 30.0% |
| ! | ATTAAGAGGAAGTGATAATG+TGG | - | chr3_2:68109693-68109712 | Msa0419900:CDS | 30.0% |
| ! | AGGATTTTTGTCCATTTTAG+AGG | - | chr3_2:68109762-68109781 | Msa0419900:CDS | 30.0% |
| AAAGATGAACTTGTACTGTA+CGG | + | chr3_2:68109833-68109852 | None:intergenic | 30.0% | |
| ATTCAGGATTTATTTCCTTG+AGG | - | chr3_2:68110012-68110031 | Msa0419900:intron | 30.0% | |
| TTCAGGATTTATTTCCTTGA+GGG | - | chr3_2:68110013-68110032 | Msa0419900:intron | 30.0% | |
| ! | AAATAAAAGGTACAGCTTCT+TGG | - | chr3_2:68110064-68110083 | Msa0419900:intron | 30.0% |
| !! | AAGTCAAAATCTCAAGTTGA+TGG | - | chr3_2:68110286-68110305 | Msa0419900:CDS | 30.0% |
| AGACATTAGAATGTTCTTGA+GGG | + | chr3_2:68110380-68110399 | None:intergenic | 30.0% | |
| AACATATATCAATGTAGGTG+AGG | - | chr3_2:68110467-68110486 | Msa0419900:five_prime_UTR | 30.0% | |
| ! | ATGTATGGTTTATGACTTGT+AGG | - | chr3_2:68110499-68110518 | Msa0419900:five_prime_UTR | 30.0% |
| GCTTACACATATAAGCACAA+AGG | + | chr3_2:68104990-68105009 | None:intergenic | 35.0% | |
| TTGTGCTTATATGTGTAAGC+TGG | - | chr3_2:68104990-68105009 | Msa0419900:three_prime_UTR | 35.0% | |
| GACTATTCCTCTGATTCTAA+TGG | - | chr3_2:68105181-68105200 | Msa0419900:three_prime_UTR | 35.0% | |
| !!! | TGATTGTTATTTTGGTTGGC+AGG | - | chr3_2:68105682-68105701 | Msa0419900:intron | 35.0% |
| !!! | GATTGTTATTTTGGTTGGCA+GGG | - | chr3_2:68105683-68105702 | Msa0419900:intron | 35.0% |
| !! | AGTTGGTGATAGTAAATCTC+TGG | - | chr3_2:68105727-68105746 | Msa0419900:intron | 35.0% |
| ATGTCAAGTATTTGTGCATC+CGG | - | chr3_2:68105954-68105973 | Msa0419900:intron | 35.0% | |
| AAAATCTTTCCTTCCGATTC+CGG | + | chr3_2:68105976-68105995 | None:intergenic | 35.0% | |
| TCTCAACTTGGTAAAAAGAC+AGG | - | chr3_2:68106006-68106025 | Msa0419900:intron | 35.0% | |
| TGAAACCAATCACATTAAGC+AGG | + | chr3_2:68106061-68106080 | None:intergenic | 35.0% | |
| AGTGGTATTTAAACAAGTGG+TGG | - | chr3_2:68106197-68106216 | Msa0419900:CDS | 35.0% | |
| !! | TTTGGGTTGTTGTGTTGTTA+TGG | - | chr3_2:68106221-68106240 | Msa0419900:CDS | 35.0% |
| AAAGCCTCTTACATCTACAA+TGG | - | chr3_2:68106251-68106270 | Msa0419900:intron | 35.0% | |
| CTTACCATTGTAGATGTAAG+AGG | + | chr3_2:68106258-68106277 | None:intergenic | 35.0% | |
| AATTGTTGAAATGGGAGGTT+AGG | - | chr3_2:68106300-68106319 | Msa0419900:intron | 35.0% | |
| ACATGACCATAAATTAGAGG+GGG | + | chr3_2:68106440-68106459 | None:intergenic | 35.0% | |
| !! | TTTTTAAGCTTCGGCATCAA+TGG | - | chr3_2:68106575-68106594 | Msa0419900:intron | 35.0% |
| TCATATGATCCTTCTTGAAG+TGG | - | chr3_2:68106601-68106620 | Msa0419900:intron | 35.0% | |
| TATGGCATTGCTTGTTTCAA+AGG | - | chr3_2:68106742-68106761 | Msa0419900:intron | 35.0% | |
| AGAGAGTTATTGTTTAGACG+AGG | + | chr3_2:68106912-68106931 | None:intergenic | 35.0% | |
| !! | AACAAGGTATTGCAAAGAGA+TGG | - | chr3_2:68107044-68107063 | Msa0419900:intron | 35.0% |
| !! | ACAAGGTATTGCAAAGAGAT+GGG | - | chr3_2:68107045-68107064 | Msa0419900:intron | 35.0% |
| ! | AACTTATACAGGCTCTAGTT+TGG | + | chr3_2:68107204-68107223 | None:intergenic | 35.0% |
| AATTCAGACCTTAGTAGACA+AGG | - | chr3_2:68107268-68107287 | Msa0419900:intron | 35.0% | |
| GTAGACAAGGAATGAAATCT+AGG | - | chr3_2:68107281-68107300 | Msa0419900:intron | 35.0% | |
| ! | TGTATAATCAACTGATTCCG+AGG | + | chr3_2:68107783-68107802 | None:intergenic | 35.0% |
| TTCCTTAGACCATCTACAAT+GGG | - | chr3_2:68107928-68107947 | Msa0419900:intron | 35.0% | |
| TATTGCATAGAGAGGAATGA+TGG | - | chr3_2:68108060-68108079 | Msa0419900:intron | 35.0% | |
| CGACAACTAAAAAGGAATTG+AGG | - | chr3_2:68108196-68108215 | Msa0419900:intron | 35.0% | |
| GATCCAGTTAATCGCATTAT+TGG | - | chr3_2:68108378-68108397 | Msa0419900:intron | 35.0% | |
| CTTCCAATAATGCGATTAAC+TGG | + | chr3_2:68108384-68108403 | None:intergenic | 35.0% | |
| AACAATACCTTACACTTACG+TGG | + | chr3_2:68108501-68108520 | None:intergenic | 35.0% | |
| ATACTCTTACTAGGGACATT+GGG | - | chr3_2:68108546-68108565 | Msa0419900:CDS | 35.0% | |
| !! | TTTTAGCAGCTCTAACAACT+TGG | + | chr3_2:68108611-68108630 | None:intergenic | 35.0% |
| AAAAGTAGCTGTCAATAACC+TGG | + | chr3_2:68108651-68108670 | None:intergenic | 35.0% | |
| ! | GATACAGATTTGTGAGCTTT+TGG | + | chr3_2:68108875-68108894 | None:intergenic | 35.0% |
| AGCTCACAAATCTGTATCAT+TGG | - | chr3_2:68108877-68108896 | Msa0419900:intron | 35.0% | |
| !! | CATAAATTTGCTAACACGGT+GGG | + | chr3_2:68108903-68108922 | None:intergenic | 35.0% |
| GTGTTAGCAAATTTATGCGT+TGG | - | chr3_2:68108906-68108925 | Msa0419900:intron | 35.0% | |
| AGTTGACCATTTCTTATCAC+GGG | - | chr3_2:68108992-68109011 | Msa0419900:intron | 35.0% | |
| ! | TTTGAAACAGGCTTTGATTC+TGG | - | chr3_2:68109117-68109136 | Msa0419900:intron | 35.0% |
| ACTTGGTTGTCGGATTAATA+TGG | - | chr3_2:68109147-68109166 | Msa0419900:intron | 35.0% | |
| AAGCTTGTATCCCAAAGAAA+TGG | - | chr3_2:68109292-68109311 | Msa0419900:CDS | 35.0% | |
| AGCTTGTATCCCAAAGAAAT+GGG | - | chr3_2:68109293-68109312 | Msa0419900:CDS | 35.0% | |
| TCATCAACAGTCATTACATC+AGG | + | chr3_2:68109320-68109339 | None:intergenic | 35.0% | |
| TATTCAAGAGAGAGTTGAGA+AGG | - | chr3_2:68109376-68109395 | Msa0419900:intron | 35.0% | |
| GGAGGAAACAAATATACCTT+GGG | + | chr3_2:68109448-68109467 | None:intergenic | 35.0% | |
| CTTCCTAAAGCAGAATTCTT+CGG | + | chr3_2:68109673-68109692 | None:intergenic | 35.0% | |
| !! | TCTGCTTTAGGAAGATTAAG+AGG | - | chr3_2:68109679-68109698 | Msa0419900:CDS | 35.0% |
| ! | GAAAGAAACCATTTTGTGCA+AGG | + | chr3_2:68109793-68109812 | None:intergenic | 35.0% |
| ACAGTACAAGTTCATCTTTC+TGG | - | chr3_2:68109834-68109853 | Msa0419900:intron | 35.0% | |
| GAATAAAAACGTTTCCCTCA+AGG | + | chr3_2:68110030-68110049 | None:intergenic | 35.0% | |
| !! | ATTGCGTTGATGGTTTATAG+CGG | - | chr3_2:68110219-68110238 | Msa0419900:intron | 35.0% |
| GACATTAGAATGTTCTTGAG+GGG | + | chr3_2:68110379-68110398 | None:intergenic | 35.0% | |
| CAGACATTAGAATGTTCTTG+AGG | + | chr3_2:68110381-68110400 | None:intergenic | 35.0% | |
| GTGAGGATAGAGAAAATGTA+TGG | - | chr3_2:68110484-68110503 | Msa0419900:five_prime_UTR | 35.0% | |
| ATATCCTTGAAATGCCTCAT+AGG | + | chr3_2:68110567-68110586 | None:intergenic | 35.0% | |
| ! | ATAATGGAGGAAGCAGTTTG+TGG | + | chr3_2:68105071-68105090 | None:intergenic | 40.0% |
| ATGAGACAATGTGTTGGAGA+AGG | + | chr3_2:68105229-68105248 | None:intergenic | 40.0% | |
| TGGTGATAGTAAATCTCTGG+TGG | - | chr3_2:68105730-68105749 | Msa0419900:intron | 40.0% | |
| GGCGACTCTTTATCAAAACT+TGG | - | chr3_2:68105824-68105843 | Msa0419900:CDS | 40.0% | |
| CTAAGACAAGCTAAACAAGC+TGG | + | chr3_2:68105871-68105890 | None:intergenic | 40.0% | |
| AGTATTTGTGCATCCGGAAT+CGG | - | chr3_2:68105960-68105979 | Msa0419900:intron | 40.0% | |
| ! | GGAATCGGAAGGAAAGATTT+TGG | - | chr3_2:68105975-68105994 | Msa0419900:intron | 40.0% |
| TGGTAAAAAGACAGGTGTGT+TGG | - | chr3_2:68106014-68106033 | Msa0419900:intron | 40.0% | |
| GGTAAAAAGACAGGTGTGTT+GGG | - | chr3_2:68106015-68106034 | Msa0419900:intron | 40.0% | |
| TAGAATGTATCAAGTGCCAC+TGG | + | chr3_2:68106392-68106411 | None:intergenic | 40.0% | |
| GGCACTTGATACATTCTAGA+AGG | - | chr3_2:68106394-68106413 | Msa0419900:intron | 40.0% | |
| TGGAAAAGTCCACTTCAAGA+AGG | + | chr3_2:68106613-68106632 | None:intergenic | 40.0% | |
| AATCAACCCCCTTTAACCTA+GGG | + | chr3_2:68106790-68106809 | None:intergenic | 40.0% | |
| TAATCAACCCCCTTTAACCT+AGG | + | chr3_2:68106791-68106810 | None:intergenic | 40.0% | |
| AGTTATTGTTTAGACGAGGC+AGG | + | chr3_2:68106908-68106927 | None:intergenic | 40.0% | |
| AACTCTCTCTTACATGGAAC+AGG | - | chr3_2:68106924-68106943 | Msa0419900:CDS | 40.0% | |
| ACTAGAGCCTGTATAAGTTC+TGG | - | chr3_2:68107205-68107224 | Msa0419900:intron | 40.0% | |
| GTTCCTTAGACCATCTACAA+TGG | - | chr3_2:68107927-68107946 | Msa0419900:intron | 40.0% | |
| TCCTTAGACCATCTACAATG+GGG | - | chr3_2:68107929-68107948 | Msa0419900:intron | 40.0% | |
| AACAGAAGTGGCAAGTAACT+AGG | + | chr3_2:68107958-68107977 | None:intergenic | 40.0% | |
| CGATTCAGGGATGATATAAC+AGG | + | chr3_2:68108342-68108361 | None:intergenic | 40.0% | |
| AGACGAGATTATGCGATTCA+GGG | + | chr3_2:68108355-68108374 | None:intergenic | 40.0% | |
| CGCATTATTGGAAGTTTGAG+TGG | - | chr3_2:68108390-68108409 | Msa0419900:intron | 40.0% | |
| CATACTCTTACTAGGGACAT+TGG | - | chr3_2:68108545-68108564 | Msa0419900:CDS | 40.0% | |
| TACTCTTACTAGGGACATTG+GGG | - | chr3_2:68108547-68108566 | Msa0419900:CDS | 40.0% | |
| GTAATGAGTGAGGTTGAAGA+CGG | - | chr3_2:68108573-68108592 | Msa0419900:intron | 40.0% | |
| TGTTAGAGCTGCTAAAAGTC+TGG | - | chr3_2:68108614-68108633 | Msa0419900:intron | 40.0% | |
| GTTAGAGCTGCTAAAAGTCT+GGG | - | chr3_2:68108615-68108634 | Msa0419900:intron | 40.0% | |
| TTAGAGCTGCTAAAAGTCTG+GGG | - | chr3_2:68108616-68108635 | Msa0419900:intron | 40.0% | |
| TGGAATGGATGTTGCTAGAA+AGG | - | chr3_2:68108796-68108815 | Msa0419900:CDS | 40.0% | |
| ! | TGTGAGCTTTTGGATAAAGC+AGG | + | chr3_2:68108865-68108884 | None:intergenic | 40.0% |
| !! | GCATAAATTTGCTAACACGG+TGG | + | chr3_2:68108904-68108923 | None:intergenic | 40.0% |
| GAATGACCCGTGATAAGAAA+TGG | + | chr3_2:68109001-68109020 | None:intergenic | 40.0% | |
| !! | TTGATTCTGGCTCGAATACT+TGG | - | chr3_2:68109130-68109149 | Msa0419900:intron | 40.0% |
| GCTTGTATCCCAAAGAAATG+GGG | - | chr3_2:68109294-68109313 | Msa0419900:CDS | 40.0% | |
| !!! | GTTGATGACTTTTTGAGACG+TGG | - | chr3_2:68109332-68109351 | Msa0419900:CDS | 40.0% |
| ! | CGATATGTCTGTGTCATTGA+GGG | - | chr3_2:68109422-68109441 | Msa0419900:intron | 40.0% |
| GGGAGGAAACAAATATACCT+TGG | + | chr3_2:68109449-68109468 | None:intergenic | 40.0% | |
| TGAACACAGAATATGAAGGG+AGG | + | chr3_2:68109466-68109485 | None:intergenic | 40.0% | |
| AAAGGAGAAAACCATGTGTG+TGG | + | chr3_2:68109514-68109533 | None:intergenic | 40.0% | |
| CCAACTTCACACCTTGAAAA+AGG | + | chr3_2:68109637-68109656 | None:intergenic | 40.0% | |
| !!! | CCTTTTTCAAGGTGTGAAGT+TGG | - | chr3_2:68109634-68109653 | Msa0419900:intron | 40.0% |
| CTTCCGAAGAATTCTGCTTT+AGG | - | chr3_2:68109667-68109686 | Msa0419900:intron | 40.0% | |
| !! | AACCAACCGCTTGTTATTCA+AGG | - | chr3_2:68109934-68109953 | Msa0419900:intron | 40.0% |
| GAATATCCACGATATCAGCA+AGG | + | chr3_2:68109996-68110015 | None:intergenic | 40.0% | |
| TGCTGATATCGTGGATATTC+AGG | - | chr3_2:68109996-68110015 | Msa0419900:intron | 40.0% | |
| !! | TTGCGTTGATGGTTTATAGC+GGG | - | chr3_2:68110220-68110239 | Msa0419900:intron | 40.0% |
| ! | GATTCCTATGAGGCATTTCA+AGG | - | chr3_2:68110560-68110579 | Msa0419900:five_prime_UTR | 40.0% |
| CCACAACCCATTAGAATCAG+AGG | + | chr3_2:68105191-68105210 | None:intergenic | 45.0% | |
| !! | CCTCTGATTCTAATGGGTTG+TGG | - | chr3_2:68105188-68105207 | Msa0419900:three_prime_UTR | 45.0% |
| !! | CTGATTCTAATGGGTTGTGG+AGG | - | chr3_2:68105191-68105210 | Msa0419900:three_prime_UTR | 45.0% |
| AACGGCATGAGACAATGTGT+TGG | + | chr3_2:68105235-68105254 | None:intergenic | 45.0% | |
| CCTGTGAAGAGTGAAGAGAA+CGG | + | chr3_2:68105253-68105272 | None:intergenic | 45.0% | |
| TTGGAGATCGCATCTCAACT+TGG | - | chr3_2:68105994-68106013 | Msa0419900:intron | 45.0% | |
| CAGCACCTGCTTAATGTGAT+TGG | - | chr3_2:68106053-68106072 | Msa0419900:intron | 45.0% | |
| !! | TGCTAGCTCTGACACTATAG+TGG | - | chr3_2:68106179-68106198 | Msa0419900:CDS | 45.0% |
| CGTTATCCTCTTGAAACCAG+TGG | - | chr3_2:68106373-68106392 | Msa0419900:CDS | 45.0% | |
| TGCACAAGACCCTAGGTTAA+AGG | - | chr3_2:68106778-68106797 | Msa0419900:intron | 45.0% | |
| GCACAAGACCCTAGGTTAAA+GGG | - | chr3_2:68106779-68106798 | Msa0419900:intron | 45.0% | |
| CACAAGACCCTAGGTTAAAG+GGG | - | chr3_2:68106780-68106799 | Msa0419900:intron | 45.0% | |
| ACAAGACCCTAGGTTAAAGG+GGG | - | chr3_2:68106781-68106800 | Msa0419900:intron | 45.0% | |
| TCTCTCTTACATGGAACAGG+AGG | - | chr3_2:68106927-68106946 | Msa0419900:CDS | 45.0% | |
| !! | CACTTACAGTTGACTCGTGT+CGG | + | chr3_2:68106987-68107006 | None:intergenic | 45.0% |
| CCTTAGACCATCTACAATGG+GGG | - | chr3_2:68107930-68107949 | Msa0419900:intron | 45.0% | |
| CTTAGACCATCTACAATGGG+GGG | - | chr3_2:68107931-68107950 | Msa0419900:intron | 45.0% | |
| ! | TTGAGGAGCTTTGACTGATC+TGG | - | chr3_2:68108284-68108303 | Msa0419900:intron | 45.0% |
| CAGACGAGATTATGCGATTC+AGG | + | chr3_2:68108356-68108375 | None:intergenic | 45.0% | |
| CTGAATCGCATAATCTCGTC+TGG | - | chr3_2:68108354-68108373 | Msa0419900:intron | 45.0% | |
| CAGTCTTCCACGTAAGTGTA+AGG | - | chr3_2:68108491-68108510 | Msa0419900:intron | 45.0% | |
| ATTGGGGTACGTAATGAGTG+AGG | - | chr3_2:68108563-68108582 | Msa0419900:CDS | 45.0% | |
| TAGCAACATCCATTCCACCA+AGG | + | chr3_2:68108793-68108812 | None:intergenic | 45.0% | |
| ! | GGGTCATTCTGCACTACTTT+TGG | - | chr3_2:68109012-68109031 | Msa0419900:intron | 45.0% |
| TGGCTCGAATACTTGGTTGT+CGG | - | chr3_2:68109137-68109156 | Msa0419900:intron | 45.0% | |
| ACATCAGGCCCCATTTCTTT+GGG | + | chr3_2:68109305-68109324 | None:intergenic | 45.0% | |
| TACATCAGGCCCCATTTCTT+TGG | + | chr3_2:68109306-68109325 | None:intergenic | 45.0% | |
| GTTGAGAAGGCAGCTTCAAA+CGG | - | chr3_2:68109389-68109408 | Msa0419900:intron | 45.0% | |
| ! | GCGATATGTCTGTGTCATTG+AGG | - | chr3_2:68109421-68109440 | Msa0419900:intron | 45.0% |
| TTGTCACACTTCCACACACA+TGG | - | chr3_2:68109500-68109519 | Msa0419900:intron | 45.0% | |
| ! | GCAAGGTCAAGCCTCTAAAA+TGG | + | chr3_2:68109776-68109795 | None:intergenic | 45.0% |
| AGGCTTGACCTTGCACAAAA+TGG | - | chr3_2:68109782-68109801 | Msa0419900:CDS | 45.0% | |
| CACCTTGAATAACAAGCGGT+TGG | + | chr3_2:68109939-68109958 | None:intergenic | 45.0% | |
| CCAGCACCTTGAATAACAAG+CGG | + | chr3_2:68109943-68109962 | None:intergenic | 45.0% | |
| AGCTTCTTGGTATCTTCTCC+TGG | - | chr3_2:68110077-68110096 | Msa0419900:intron | 45.0% | |
| GCTTACCTGCAGACTTCATA+TGG | - | chr3_2:68110317-68110336 | Msa0419900:CDS | 45.0% | |
| ACCTGCAGACTTCATATGGA+TGG | - | chr3_2:68110321-68110340 | Msa0419900:CDS | 45.0% | |
| TCCATCCATATGAAGTCTGC+AGG | + | chr3_2:68110325-68110344 | None:intergenic | 45.0% | |
| AGCTACTGCAGATTCCTATG+AGG | - | chr3_2:68110550-68110569 | Msa0419900:five_prime_UTR | 45.0% | |
| !!! | TTTTTTATTTTTTTTATTAC+GGG | - | chr3_2:68105538-68105557 | Msa0419900:CDS | 5.0% |
| !! | AATGATTAATTAAAAAATAA+TGG | + | chr3_2:68107700-68107719 | None:intergenic | 5.0% |
| !!! | ATAAATTTTGTTTTTTTTTA+TGG | + | chr3_2:68108137-68108156 | None:intergenic | 5.0% |
| !!! | TATTATTATTATTTTTAAGT+TGG | - | chr3_2:68110427-68110446 | Msa0419900:five_prime_UTR | 5.0% |
| !!! | ATTTTTCATTTAAATAAAAA+AGG | - | chr3_2:68110526-68110545 | Msa0419900:five_prime_UTR | 5.0% |
| !! | CTAATGGGTTGTGGAGGAGT+TGG | - | chr3_2:68105197-68105216 | Msa0419900:three_prime_UTR | 50.0% |
| CCGTTCTCTTCACTCTTCAC+AGG | - | chr3_2:68105250-68105269 | Msa0419900:intron | 50.0% | |
| GGACTCTGCTTGAGAGTTGT+GGG | - | chr3_2:68105704-68105723 | Msa0419900:intron | 50.0% | |
| TGCTTGAGAGTTGTGGGAGT+TGG | - | chr3_2:68105710-68105729 | Msa0419900:intron | 50.0% | |
| !! | GAACTTTGTCGGCTCAAGCA+TGG | - | chr3_2:68105800-68105819 | Msa0419900:intron | 50.0% |
| TTTGTGCATCCGGAATCGGA+AGG | - | chr3_2:68105964-68105983 | Msa0419900:intron | 50.0% | |
| GCTAGCAGTGCAATCGACAA+AGG | + | chr3_2:68106166-68106185 | None:intergenic | 50.0% | |
| !! | CAAGTGCCACTGGTTTCAAG+AGG | + | chr3_2:68106382-68106401 | None:intergenic | 50.0% |
| ACTGAAGTGCACAAGACCCT+AGG | - | chr3_2:68106771-68106790 | Msa0419900:intron | 50.0% | |
| GTAGATGGTCTAAGGAACCG+AGG | + | chr3_2:68107925-68107944 | None:intergenic | 50.0% | |
| CCCCCATTGTAGATGGTCTA+AGG | + | chr3_2:68107933-68107952 | None:intergenic | 50.0% | |
| GCTCTAACAACTTGGCTCAG+TGG | + | chr3_2:68108603-68108622 | None:intergenic | 50.0% | |
| GCAAATTTATGCGTTGGGCG+TGG | - | chr3_2:68108912-68108931 | Msa0419900:intron | 50.0% | |
| !! | CCGCTTGTTATTCAAGGTGC+TGG | - | chr3_2:68109940-68109959 | Msa0419900:intron | 50.0% |
| !! | GTTATTCAAGGTGCTGGAGC+TGG | - | chr3_2:68109946-68109965 | Msa0419900:intron | 50.0% |
| TGGTGTCCTTGCTGATATCG+TGG | - | chr3_2:68109987-68110006 | Msa0419900:intron | 50.0% | |
| AAGCACGTCAGCAAGATTCC+AGG | + | chr3_2:68110098-68110117 | None:intergenic | 50.0% | |
| !! | AGGGGAAAAGAGTGCTTCTC+AGG | + | chr3_2:68110361-68110380 | None:intergenic | 50.0% |
| GGGACTCTGCTTGAGAGTTG+TGG | - | chr3_2:68105703-68105722 | Msa0419900:intron | 55.0% | |
| !! | CTTTGTCGGCTCAAGCATGG+TGG | - | chr3_2:68105803-68105822 | Msa0419900:intron | 55.0% |
| CTAGGACCCCCCATTGTAGA+TGG | + | chr3_2:68107940-68107959 | None:intergenic | 55.0% | |
| ! | AGTCTGGGGTACACTGAACC+AGG | - | chr3_2:68108630-68108649 | Msa0419900:intron | 55.0% |
| ATTCCACCAAGGTCGTCACG+CGG | + | chr3_2:68108782-68108801 | None:intergenic | 55.0% | |
| TATGCGTTGGGCGTGGCTAA+TGG | - | chr3_2:68108919-68108938 | Msa0419900:intron | 55.0% | |
| ATGCGTTGGGCGTGGCTAAT+GGG | - | chr3_2:68108920-68108939 | Msa0419900:intron | 55.0% | |
| ! | TCTGTGTCATTGAGGGCCCA+AGG | - | chr3_2:68109429-68109448 | Msa0419900:intron | 55.0% |
| GGAAATGACACGACTGCAGC+TGG | - | chr3_2:68109967-68109986 | Msa0419900:intron | 55.0% | |
| GACTCGTGTCGGATACGACG+TGG | + | chr3_2:68106976-68106995 | None:intergenic | 60.0% | |
| GCGTGACGACCTTGGTGGAA+TGG | - | chr3_2:68108781-68108800 | Msa0419900:CDS | 60.0% | |
| TGCGTTGGGCGTGGCTAATG+GGG | - | chr3_2:68108921-68108940 | Msa0419900:intron | 60.0% | |
| GCAGATCCGCGTGACGACCT+TGG | - | chr3_2:68108773-68108792 | Msa0419900:CDS | 65.0% | |
| GATCCGCGTGACGACCTTGG+TGG | - | chr3_2:68108776-68108795 | Msa0419900:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 68104906 | 68110626 | 68104906 | ID=Msa0419900;Name=Msa0419900 |
| chr3_2 | mRNA | 68104906 | 68110626 | 68104906 | ID=Msa0419900-mRNA-1;Parent=Msa0419900;Name=Msa0419900-mRNA-1;_AED=0.24;_eAED=0.24;_QI=270|0.84|0.92|0.92|0.92|0.92|14|396|397 |
| chr3_2 | exon | 68104906 | 68105261 | 68104906 | ID=Msa0419900-mRNA-1:exon:16038;Parent=Msa0419900-mRNA-1 |
| chr3_2 | exon | 68105460 | 68105625 | 68105460 | ID=Msa0419900-mRNA-1:exon:16037;Parent=Msa0419900-mRNA-1 |
| chr3_2 | exon | 68105818 | 68105887 | 68105818 | ID=Msa0419900-mRNA-1:exon:16036;Parent=Msa0419900-mRNA-1 |
| chr3_2 | exon | 68106082 | 68106245 | 68106082 | ID=Msa0419900-mRNA-1:exon:16035;Parent=Msa0419900-mRNA-1 |
| chr3_2 | exon | 68106352 | 68106405 | 68106352 | ID=Msa0419900-mRNA-1:exon:16034;Parent=Msa0419900-mRNA-1 |
| chr3_2 | exon | 68106715 | 68106755 | 68106715 | ID=Msa0419900-mRNA-1:exon:16033;Parent=Msa0419900-mRNA-1 |
| chr3_2 | exon | 68106881 | 68106973 | 68106881 | ID=Msa0419900-mRNA-1:exon:16032;Parent=Msa0419900-mRNA-1 |
| chr3_2 | exon | 68107121 | 68107208 | 68107121 | ID=Msa0419900-mRNA-1:exon:16031;Parent=Msa0419900-mRNA-1 |
| chr3_2 | exon | 68108533 | 68108586 | 68108533 | ID=Msa0419900-mRNA-1:exon:16030;Parent=Msa0419900-mRNA-1 |
| chr3_2 | exon | 68108769 | 68108831 | 68108769 | ID=Msa0419900-mRNA-1:exon:16029;Parent=Msa0419900-mRNA-1 |
| chr3_2 | exon | 68109260 | 68109375 | 68109260 | ID=Msa0419900-mRNA-1:exon:16028;Parent=Msa0419900-mRNA-1 |
| chr3_2 | exon | 68109505 | 68109582 | 68109505 | ID=Msa0419900-mRNA-1:exon:16027;Parent=Msa0419900-mRNA-1 |
| chr3_2 | exon | 68109678 | 68109828 | 68109678 | ID=Msa0419900-mRNA-1:exon:16026;Parent=Msa0419900-mRNA-1 |
| chr3_2 | exon | 68110261 | 68110626 | 68110261 | ID=Msa0419900-mRNA-1:exon:16025;Parent=Msa0419900-mRNA-1 |
| chr3_2 | five_prime_UTR | 68110357 | 68110626 | 68110357 | ID=Msa0419900-mRNA-1:five_prime_utr;Parent=Msa0419900-mRNA-1 |
| chr3_2 | CDS | 68110261 | 68110356 | 68110261 | ID=Msa0419900-mRNA-1:cds;Parent=Msa0419900-mRNA-1 |
| chr3_2 | CDS | 68109678 | 68109828 | 68109678 | ID=Msa0419900-mRNA-1:cds;Parent=Msa0419900-mRNA-1 |
| chr3_2 | CDS | 68109505 | 68109582 | 68109505 | ID=Msa0419900-mRNA-1:cds;Parent=Msa0419900-mRNA-1 |
| chr3_2 | CDS | 68109260 | 68109375 | 68109260 | ID=Msa0419900-mRNA-1:cds;Parent=Msa0419900-mRNA-1 |
| chr3_2 | CDS | 68108769 | 68108831 | 68108769 | ID=Msa0419900-mRNA-1:cds;Parent=Msa0419900-mRNA-1 |
| chr3_2 | CDS | 68108533 | 68108586 | 68108533 | ID=Msa0419900-mRNA-1:cds;Parent=Msa0419900-mRNA-1 |
| chr3_2 | CDS | 68107121 | 68107208 | 68107121 | ID=Msa0419900-mRNA-1:cds;Parent=Msa0419900-mRNA-1 |
| chr3_2 | CDS | 68106881 | 68106973 | 68106881 | ID=Msa0419900-mRNA-1:cds;Parent=Msa0419900-mRNA-1 |
| chr3_2 | CDS | 68106715 | 68106755 | 68106715 | ID=Msa0419900-mRNA-1:cds;Parent=Msa0419900-mRNA-1 |
| chr3_2 | CDS | 68106352 | 68106405 | 68106352 | ID=Msa0419900-mRNA-1:cds;Parent=Msa0419900-mRNA-1 |
| chr3_2 | CDS | 68106082 | 68106245 | 68106082 | ID=Msa0419900-mRNA-1:cds;Parent=Msa0419900-mRNA-1 |
| chr3_2 | CDS | 68105818 | 68105887 | 68105818 | ID=Msa0419900-mRNA-1:cds;Parent=Msa0419900-mRNA-1 |
| chr3_2 | CDS | 68105500 | 68105625 | 68105500 | ID=Msa0419900-mRNA-1:cds;Parent=Msa0419900-mRNA-1 |
| chr3_2 | three_prime_UTR | 68105460 | 68105499 | 68105460 | ID=Msa0419900-mRNA-1:three_prime_utr;Parent=Msa0419900-mRNA-1 |
| chr3_2 | three_prime_UTR | 68104906 | 68105261 | 68104906 | ID=Msa0419900-mRNA-1:three_prime_utr;Parent=Msa0419900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
