Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421090 | XP_003601572.2 | 93.519 | 216 | 10 | 1 | 1 | 216 | 1 | 212 | 2.78e-131 | 378 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421090 | G7J9I4 | 93.519 | 216 | 10 | 1 | 1 | 216 | 1 | 212 | 1.33e-131 | 378 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0421090 | Msa0453050 | -0.816295 | 5.952492e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421090 | MtrunA17_Chr3g0121011 | 93.519 | 216 | 10 | 1 | 1 | 216 | 22 | 233 | 7.82e-135 | 377 |
| Msa0421090 | MtrunA17_Chr3g0120991 | 46.277 | 188 | 78 | 5 | 45 | 216 | 39 | 219 | 1.70e-39 | 135 |
| Msa0421090 | MtrunA17_Chr3g0120981 | 40.455 | 220 | 111 | 8 | 1 | 215 | 1 | 205 | 2.51e-35 | 124 |
| Msa0421090 | MtrunA17_Chr3g0120941 | 37.238 | 239 | 118 | 8 | 1 | 216 | 14 | 243 | 6.08e-35 | 124 |
| Msa0421090 | MtrunA17_Chr3g0120951 | 38.288 | 222 | 116 | 7 | 1 | 216 | 1 | 207 | 7.88e-35 | 122 |
| Msa0421090 | MtrunA17_Chr3g0120591 | 37.555 | 229 | 122 | 10 | 1 | 215 | 1 | 222 | 8.91e-30 | 110 |
| Msa0421090 | MtrunA17_Chr3g0120641 | 36.087 | 230 | 125 | 12 | 1 | 215 | 19 | 241 | 4.17e-23 | 93.2 |
| Msa0421090 | MtrunA17_Chr3g0120961 | 33.636 | 220 | 111 | 6 | 1 | 216 | 1 | 189 | 8.96e-23 | 90.9 |
| Msa0421090 | MtrunA17_Chr3g0119711 | 33.173 | 208 | 115 | 9 | 21 | 215 | 2 | 198 | 2.65e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 106 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCTTTAGCAAATAAATT+TGG | 0.179740 | 3_2:+69981671 | Msa0421090:CDS |
| GGGTTTGAAGTACGAGTTTA+AGG | 0.181770 | 3_2:+69981882 | Msa0421090:intron |
| GTATACATGCTTAGATATTT+AGG | 0.218429 | 3_2:+69983700 | Msa0421090:three_prime_UTR |
| TATTTAGGATGTTCTATTCT+AGG | 0.222219 | 3_2:+69983715 | Msa0421090:three_prime_UTR |
| TCAAATTGGTAACAATTTAT+AGG | 0.243596 | 3_2:+69983760 | Msa0421090:three_prime_UTR |
| CAAATAAATTTGGCCATAAC+TGG | 0.265315 | 3_2:+69981681 | Msa0421090:CDS |
| TCAGATTCCGAATCCGATTC+TGG | 0.272868 | 3_2:-69979824 | None:intergenic |
| GGATGAACATCTTCTGGTTT+TGG | 0.280325 | 3_2:-69981970 | None:intergenic |
| CTTCCCTGCTATTACTTTCC+TGG | 0.281090 | 3_2:+69983572 | Msa0421090:three_prime_UTR |
| TTGGAAGGATGAACATCTTC+TGG | 0.298673 | 3_2:-69981976 | None:intergenic |
| TTATTTGCTAAAGGTGGAAT+AGG | 0.323459 | 3_2:-69981665 | None:intergenic |
| TACTCTTATAGACTTCAAAT+TGG | 0.335668 | 3_2:+69983746 | Msa0421090:three_prime_UTR |
| GCCATTAGTCATATTCCTTT+AGG | 0.349715 | 3_2:+69981919 | Msa0421090:CDS |
| CGGCGTCACCCCACCTCCTC+TGG | 0.352863 | 3_2:+69979763 | Msa0421090:CDS |
| ATCGTCTATAGGAACGGGTC+TGG | 0.358535 | 3_2:-69981705 | None:intergenic |
| ATCTGTTATGTGAAACGGTC+TGG | 0.364592 | 3_2:-69983276 | None:intergenic |
| TCGACTCTCCAAGTGTGCTT+TGG | 0.365473 | 3_2:+69981748 | Msa0421090:CDS |
| ACATTTGCTAAGGTTGGAAC+AGG | 0.370038 | 3_2:-69983236 | None:intergenic |
| CGGAACCGGAACCAATTGAT+TGG | 0.370659 | 3_2:+69979849 | Msa0421090:CDS |
| TAGGACAGGTTGCCCGGCAT+TGG | 0.405122 | 3_2:+69983603 | Msa0421090:three_prime_UTR |
| CAGTCCCAATCAATTGGTTC+CGG | 0.406500 | 3_2:-69979854 | None:intergenic |
| TTGAAGAATGTCGATGGAAT+TGG | 0.407957 | 3_2:+69979727 | Msa0421090:exon |
| AACGTCTAGGACAGGTTGCC+CGG | 0.415859 | 3_2:+69983597 | Msa0421090:three_prime_UTR |
| TATTTGCTAAAGGTGGAATA+GGG | 0.418257 | 3_2:-69981664 | None:intergenic |
| AGGTAATGTAATAAGTAGTA+AGG | 0.419396 | 3_2:-69983506 | None:intergenic |
| CGACATTCTTCAACACTTGA+CGG | 0.430458 | 3_2:-69979717 | None:intergenic |
| AAAATACAATCATGACAATC+AGG | 0.434603 | 3_2:+69983343 | Msa0421090:three_prime_UTR |
| TGGCCAAATTTATTTGCTAA+AGG | 0.435844 | 3_2:-69981674 | None:intergenic |
| CCACATACATTTGCTAAGGT+TGG | 0.436602 | 3_2:-69983242 | None:intergenic |
| TTATCCTGAAGATATTCAAT+TGG | 0.436706 | 3_2:-69979887 | None:intergenic |
| TACAGTCACAGACGTGGGTC+TGG | 0.437710 | 3_2:-69982017 | None:intergenic |
| TCGCAGCTTTCCAGAGGAGG+TGG | 0.437827 | 3_2:-69979773 | None:intergenic |
| GATACCCAGTCCCAATCAAT+TGG | 0.444473 | 3_2:-69979860 | None:intergenic |
| CACGACTTGATCACAGGTTC+AGG | 0.445281 | 3_2:-69982042 | None:intergenic |
| GAAACCAATTGAATATCTTC+AGG | 0.445477 | 3_2:+69979883 | Msa0421090:CDS |
| AAAGTACAACAAGGACAATC+AGG | 0.451367 | 3_2:+69981772 | Msa0421090:CDS |
| AACCACAGGTGGTCCAATGC+CGG | 0.454866 | 3_2:-69983616 | None:intergenic |
| GAACGGGTCTGGGCCAGTTA+TGG | 0.459899 | 3_2:-69981694 | None:intergenic |
| TTCGGAATCTGATTCGGAAC+CGG | 0.461844 | 3_2:+69979835 | Msa0421090:CDS |
| CGGAACCAATTGATTGGGAC+TGG | 0.463007 | 3_2:+69979855 | Msa0421090:CDS |
| CGACCTCTCCAAACTTGCCC+TGG | 0.465045 | 3_2:+69983319 | Msa0421090:three_prime_UTR |
| GAAAGTAATAGCAGGGAAGT+TGG | 0.467046 | 3_2:-69983568 | None:intergenic |
| ACAAGAAGAGGCTGAAGAAA+AGG | 0.467705 | 3_2:+69979982 | Msa0421090:CDS |
| ATGATGATCCTTTGCTTCAA+AGG | 0.469702 | 3_2:-69983526 | None:intergenic |
| CCAAATTTATTTGCTAAAGG+TGG | 0.470541 | 3_2:-69981671 | None:intergenic |
| GGCTGCTCGTGATCGTCTAT+AGG | 0.476040 | 3_2:-69981716 | None:intergenic |
| AACGGAACCAGAATCGGATT+CGG | 0.479568 | 3_2:+69979817 | Msa0421090:CDS |
| ACCACAGGTGGTCCAATGCC+GGG | 0.484448 | 3_2:-69983615 | None:intergenic |
| ATCGGATTCGGAATCTGATT+CGG | 0.486643 | 3_2:+69979829 | Msa0421090:CDS |
| GGAACCGGAACCAATTGATT+GGG | 0.488378 | 3_2:+69979850 | Msa0421090:CDS |
| TCGTGATCGTCTATAGGAAC+GGG | 0.489382 | 3_2:-69981710 | None:intergenic |
| TCCTCGCAGCTTTCCAGAGG+AGG | 0.494982 | 3_2:-69979776 | None:intergenic |
| TCTGTTATGTGAAACGGTCT+GGG | 0.495398 | 3_2:-69983275 | None:intergenic |
| TTACATTACCTTTGAAGCAA+AGG | 0.499336 | 3_2:+69983518 | Msa0421090:three_prime_UTR |
| GGTAATGTAATAAGTAGTAA+GGG | 0.503032 | 3_2:-69983505 | None:intergenic |
| CGCAGCTTTCCAGAGGAGGT+GGG | 0.508578 | 3_2:-69979772 | None:intergenic |
| GCCTAAAGGAATATGACTAA+TGG | 0.514370 | 3_2:-69981920 | None:intergenic |
| TGATCATCTGTTATGTGAAA+CGG | 0.521405 | 3_2:-69983281 | None:intergenic |
| TCGTCTATAGGAACGGGTCT+GGG | 0.522661 | 3_2:-69981704 | None:intergenic |
| AAGGTCAACAAACTCGTACT+TGG | 0.523388 | 3_2:-69983457 | None:intergenic |
| TCCTGGCCAACGTCTAGGAC+AGG | 0.532395 | 3_2:+69983589 | Msa0421090:three_prime_UTR |
| CTTGAAAAGAAATTTGGCAT+AGG | 0.532598 | 3_2:-69983822 | None:intergenic |
| CTCGTGATCGTCTATAGGAA+CGG | 0.534266 | 3_2:-69981711 | None:intergenic |
| ACCTGTCCTAGACGTTGGCC+AGG | 0.540084 | 3_2:-69983590 | None:intergenic |
| GCCTCTTAGTTGCCTTGACA+AGG | 0.541690 | 3_2:-69983476 | None:intergenic |
| TTGGCCAGGAAAGTAATAGC+AGG | 0.542715 | 3_2:-69983576 | None:intergenic |
| TACTTTCCTGGCCAACGTCT+AGG | 0.548119 | 3_2:+69983584 | Msa0421090:three_prime_UTR |
| TTGAAGTAACATTATTGTCA+TGG | 0.548143 | 3_2:-69983675 | None:intergenic |
| CGAGTTTAAGGAGCTTGTCA+AGG | 0.553566 | 3_2:+69981894 | Msa0421090:CDS |
| ATGGAACACGACTTGATCAC+AGG | 0.555050 | 3_2:-69982048 | None:intergenic |
| GTTGCCACATACATTTGCTA+AGG | 0.555185 | 3_2:-69983246 | None:intergenic |
| AGTTGGAAGGATGAACATGA+TGG | 0.560819 | 3_2:-69983551 | None:intergenic |
| GTAATGTAGTAGCTGCCTAA+AGG | 0.562791 | 3_2:-69981934 | None:intergenic |
| GCAGCTTTCCAGAGGAGGTG+GGG | 0.563645 | 3_2:-69979771 | None:intergenic |
| CGAGTTTGTTGACCTTGTCA+AGG | 0.564814 | 3_2:+69983464 | Msa0421090:three_prime_UTR |
| TGGAATAGGGATAGCATCGA+AGG | 0.569305 | 3_2:-69981651 | None:intergenic |
| TGGAACAGGGATAGCATCGA+AGG | 0.569305 | 3_2:-69983222 | None:intergenic |
| GCCCGGCATTGGACCACCTG+TGG | 0.570392 | 3_2:+69983614 | Msa0421090:three_prime_UTR |
| GTTGGAAGGATGAACATGAT+GGG | 0.570527 | 3_2:-69983550 | None:intergenic |
| GTAATAGCAGGGAAGTTGGA+AGG | 0.570637 | 3_2:-69983564 | None:intergenic |
| ACAGACGTGGGTCTGGAAAG+TGG | 0.572386 | 3_2:-69982010 | None:intergenic |
| GAAAGTGGCAGCAGACGTGT+TGG | 0.575299 | 3_2:-69981995 | None:intergenic |
| AGTCGTGAGAGAACAAGAAG+AGG | 0.579539 | 3_2:+69979970 | Msa0421090:CDS |
| ATGGAACACGACTCAACCAC+AGG | 0.593707 | 3_2:-69983630 | None:intergenic |
| CCAACCTTAGCAAATGTATG+TGG | 0.599683 | 3_2:+69983242 | Msa0421090:three_prime_UTR |
| CAAGTGTTGAAGAATGTCGA+TGG | 0.604854 | 3_2:+69979721 | Msa0421090:exon |
| GTGGCAGCAGACGTGTTGGA+AGG | 0.607450 | 3_2:-69981991 | None:intergenic |
| ACCTTGTCAAGGCAACTAAG+AGG | 0.608978 | 3_2:+69983475 | Msa0421090:three_prime_UTR |
| AGACCCACGTCTGTGACTGT+AGG | 0.612955 | 3_2:+69982019 | Msa0421090:CDS |
| GTAATGTAATAAGTAGTAAG+GGG | 0.621479 | 3_2:-69983504 | None:intergenic |
| CAGGCCTACAGTCACAGACG+TGG | 0.625811 | 3_2:-69982023 | None:intergenic |
| TTTCCAGGGCAAGTTTGGAG+AGG | 0.627385 | 3_2:-69983322 | None:intergenic |
| GGGCAACCTGTCCTAGACGT+TGG | 0.627717 | 3_2:-69983595 | None:intergenic |
| TTGGAGAGTCGAATGAGAAG+TGG | 0.639275 | 3_2:-69981737 | None:intergenic |
| GGAACCAATTGATTGGGACT+GGG | 0.640773 | 3_2:+69979856 | Msa0421090:CDS |
| CATTTGCTAAGGTTGGAACA+GGG | 0.643988 | 3_2:-69983235 | None:intergenic |
| TGGCCAGGAAAGTAATAGCA+GGG | 0.648257 | 3_2:-69983575 | None:intergenic |
| GAATTGGATACAGTGTTGCA+CGG | 0.652051 | 3_2:+69979743 | Msa0421090:CDS |
| GGAATAGGGATAGCATCGAA+GGG | 0.653007 | 3_2:-69981650 | None:intergenic |
| GGAACAGGGATAGCATCGAA+GGG | 0.668541 | 3_2:-69983221 | None:intergenic |
| ACCTCCTCTGGAAAGCTGCG+AGG | 0.671307 | 3_2:+69979775 | Msa0421090:CDS |
| GAACACGACTCAACCACAGG+TGG | 0.679565 | 3_2:-69983627 | None:intergenic |
| TGCTTTGGAAAAGTACAACA+AGG | 0.694400 | 3_2:+69981763 | Msa0421090:CDS |
| GGTCTTCAAATACTCAGCGA+CGG | 0.718541 | 3_2:-69980005 | None:intergenic |
| ACGTACACTTATGTTACGAG+CGG | 0.729892 | 3_2:-69980026 | None:intergenic |
| AGGCCTACAGTCACAGACGT+GGG | 0.739662 | 3_2:-69982022 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTTATTTGTTCTAAAA+AGG | - | chr3_2:69980449-69980468 | None:intergenic | 10.0% |
| !! | AAAATGTAACATAAATAAAT+TGG | - | chr3_2:69980618-69980637 | None:intergenic | 10.0% |
| !!! | ATTAATATTGATGATTTTAA+TGG | + | chr3_2:69980866-69980885 | Msa0421090:intron | 10.0% |
| !!! | AATTTGAGATAATTTTTTTT+AGG | + | chr3_2:69981274-69981293 | Msa0421090:intron | 10.0% |
| !!! | ATAATATTGTTTTTAATACA+AGG | + | chr3_2:69981381-69981400 | Msa0421090:intron | 10.0% |
| !!! | TAATATTGTTTTTAATACAA+GGG | + | chr3_2:69981382-69981401 | Msa0421090:intron | 10.0% |
| !!! | TATTCTATTTTGTTTTATTT+AGG | + | chr3_2:69981861-69981880 | Msa0421090:intron | 10.0% |
| !!! | ATTCTATTTTGTTTTATTTA+GGG | + | chr3_2:69981862-69981881 | Msa0421090:intron | 10.0% |
| !!! | TTACATGTTTAATATTTTAT+AGG | + | chr3_2:69982121-69982140 | Msa0421090:intron | 10.0% |
| !! | AACATAGATATAATATAATA+TGG | - | chr3_2:69983394-69983413 | None:intergenic | 10.0% |
| !! | TTGTTTGATTGAAATTTAAT+GGG | - | chr3_2:69980134-69980153 | None:intergenic | 15.0% |
| !! | TTTGTTTGATTGAAATTTAA+TGG | - | chr3_2:69980135-69980154 | None:intergenic | 15.0% |
| !! | AAATAATTAATGTACATTGA+GGG | - | chr3_2:69980574-69980593 | None:intergenic | 15.0% |
| !!! | TAATTAGTTAATGTTTTCAT+AGG | - | chr3_2:69980643-69980662 | None:intergenic | 15.0% |
| !! | ATGTTTATCCTTATTAATTA+TGG | + | chr3_2:69980893-69980912 | Msa0421090:intron | 15.0% |
| !! | ATTATAAAAACAAAATGCTT+GGG | - | chr3_2:69982440-69982459 | None:intergenic | 15.0% |
| !! | TATTATAAAAACAAAATGCT+TGG | - | chr3_2:69982441-69982460 | None:intergenic | 15.0% |
| !!! | TGATATGAATATATGTTTTT+TGG | + | chr3_2:69982594-69982613 | Msa0421090:intron | 15.0% |
| !!! | CTTGTATAGAATTTTATTTA+TGG | + | chr3_2:69982642-69982661 | Msa0421090:intron | 15.0% |
| !! | ATAGATATAATATAATATGG+TGG | - | chr3_2:69983391-69983410 | None:intergenic | 15.0% |
| !! | TTTGGATTTATGATATTTGA+TGG | + | chr3_2:69980085-69980104 | Msa0421090:intron | 20.0% |
| !! | ATTTATGATATTTGATGGAA+TGG | + | chr3_2:69980090-69980109 | Msa0421090:intron | 20.0% |
| !! | ACTCAAAAGATCTTATAAAT+GGG | - | chr3_2:69980510-69980529 | None:intergenic | 20.0% |
| !! | AACTCAAAAGATCTTATAAA+TGG | - | chr3_2:69980511-69980530 | None:intergenic | 20.0% |
| !! | GAAATAATTAATGTACATTG+AGG | - | chr3_2:69980575-69980594 | None:intergenic | 20.0% |
| !! | AACATAAATAAATTGGATCA+GGG | - | chr3_2:69980611-69980630 | None:intergenic | 20.0% |
| !! | TAACATAAATAAATTGGATC+AGG | - | chr3_2:69980612-69980631 | None:intergenic | 20.0% |
| !! | TAACTAATTATCTCTCATAA+AGG | + | chr3_2:69980653-69980672 | Msa0421090:intron | 20.0% |
| !! | ACAAGTTAGTAGTATTAATT+AGG | + | chr3_2:69981093-69981112 | Msa0421090:intron | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+GGG | + | chr3_2:69981094-69981113 | Msa0421090:intron | 20.0% |
| !! | AAGTTAGTAGTATTAATTAG+GGG | + | chr3_2:69981095-69981114 | Msa0421090:intron | 20.0% |
| !! | AGACAAAAATAAAGTCAAAT+AGG | + | chr3_2:69981145-69981164 | Msa0421090:intron | 20.0% |
| !! | TGATTAAAATGCAATAGATA+AGG | + | chr3_2:69981196-69981215 | Msa0421090:intron | 20.0% |
| !! | GATTAAAATGCAATAGATAA+GGG | + | chr3_2:69981197-69981216 | Msa0421090:intron | 20.0% |
| !!! | TTTTTAGGAAAGAATTTTGT+TGG | + | chr3_2:69981289-69981308 | Msa0421090:intron | 20.0% |
| !! | ACAAAGATATAAACAGATAT+TGG | - | chr3_2:69981821-69981840 | None:intergenic | 20.0% |
| !! | AAATAGAAATGTTATTACCA+TGG | - | chr3_2:69982094-69982113 | None:intergenic | 20.0% |
| !! | AATATTTGTAGGCTTAAAAA+TGG | + | chr3_2:69982153-69982172 | Msa0421090:intron | 20.0% |
| !! | TTTAAACTTGCATTTGATTA+TGG | + | chr3_2:69982193-69982212 | Msa0421090:intron | 20.0% |
| !! | TTATAAAAACAAAATGCTTG+GGG | - | chr3_2:69982439-69982458 | None:intergenic | 20.0% |
| !! | AACATATATTCATATCACAA+GGG | - | chr3_2:69982591-69982610 | None:intergenic | 20.0% |
| !! | AAACATATATTCATATCACA+AGG | - | chr3_2:69982592-69982611 | None:intergenic | 20.0% |
| !!! | TGAATATATGTTTTTTGGTT+TGG | + | chr3_2:69982599-69982618 | Msa0421090:intron | 20.0% |
| !! | CATAACAATTCTTCATAATT+CGG | - | chr3_2:69982680-69982699 | None:intergenic | 20.0% |
| !!! | GAATTTTCTTGTCTTAAAAA+TGG | + | chr3_2:69982771-69982790 | Msa0421090:intron | 20.0% |
| !! | AAACTAGTACAAGTATTATT+GGG | - | chr3_2:69982907-69982926 | None:intergenic | 20.0% |
| !!! | AGTTTTGTTTCTCTTATATT+AGG | + | chr3_2:69983431-69983450 | Msa0421090:intron | 20.0% |
| !!! | GTTTTGTTTCTCTTATATTA+GGG | + | chr3_2:69983432-69983451 | Msa0421090:intron | 20.0% |
| !!! | TCAAATTGGTAACAATTTAT+AGG | + | chr3_2:69983760-69983779 | Msa0421090:three_prime_UTR | 20.0% |
| !!! | GATTTTCTTGAAAAGAAATT+TGG | - | chr3_2:69983831-69983850 | None:intergenic | 20.0% |
| ! | TTATCCTGAAGATATTCAAT+TGG | - | chr3_2:69979890-69979909 | None:intergenic | 25.0% |
| ! | AAACAATTTGAAGGATTGAA+TGG | - | chr3_2:69980211-69980230 | None:intergenic | 25.0% |
| !! | ATATACAGAGCATTATGTAA+GGG | - | chr3_2:69980325-69980344 | None:intergenic | 25.0% |
| !! | AATATACAGAGCATTATGTA+AGG | - | chr3_2:69980326-69980345 | None:intergenic | 25.0% |
| !! | TTTTCAATTCAAAATGTCTC+AGG | + | chr3_2:69980363-69980382 | Msa0421090:intron | 25.0% |
| ! | CTCAAAAGATCTTATAAATG+GGG | - | chr3_2:69980509-69980528 | None:intergenic | 25.0% |
| ! | ACATAAATAAATTGGATCAG+GGG | - | chr3_2:69980610-69980629 | None:intergenic | 25.0% |
| !!! | TGTTCTATTTGAGTTTTACA+CGG | + | chr3_2:69980831-69980850 | Msa0421090:intron | 25.0% |
| ! | TCCTTATTAATTATGGTTAG+TGG | + | chr3_2:69980900-69980919 | Msa0421090:intron | 25.0% |
| ! | TCCACTAACCATAATTAATA+AGG | - | chr3_2:69980904-69980923 | None:intergenic | 25.0% |
| ! | AAAAGTGAAAAAAGCAAAAG+GGG | - | chr3_2:69980965-69980984 | None:intergenic | 25.0% |
| ! | GAAAAGTGAAAAAAGCAAAA+GGG | - | chr3_2:69980966-69980985 | None:intergenic | 25.0% |
| ! | AGAAAAGTGAAAAAAGCAAA+AGG | - | chr3_2:69980967-69980986 | None:intergenic | 25.0% |
| ! | TAATACACACATACAAACAA+AGG | - | chr3_2:69981050-69981069 | None:intergenic | 25.0% |
| !! | AATTAGGGGTATATTTGAAA+AGG | + | chr3_2:69981109-69981128 | Msa0421090:intron | 25.0% |
| !! | ATTAGGGGTATATTTGAAAA+GGG | + | chr3_2:69981110-69981129 | Msa0421090:intron | 25.0% |
| ! | TGTTGTATTAACATCTTAGA+AGG | + | chr3_2:69981244-69981263 | Msa0421090:intron | 25.0% |
| ! | GTTGTATTAACATCTTAGAA+GGG | + | chr3_2:69981245-69981264 | Msa0421090:intron | 25.0% |
| !! | TTTTAATACAAGGGTAGAAA+TGG | + | chr3_2:69981391-69981410 | Msa0421090:intron | 25.0% |
| !! | TAATTTTCCATTCCATTGTT+TGG | - | chr3_2:69981454-69981473 | None:intergenic | 25.0% |
| !! | CAGAATGAAATATAATGGAA+TGG | - | chr3_2:69981533-69981552 | None:intergenic | 25.0% |
| !!! | ATAACATTGAAGTTGATAAC+TGG | - | chr3_2:69981844-69981863 | None:intergenic | 25.0% |
| ! | GGAGAAGAATAAATATTTGT+AGG | + | chr3_2:69982142-69982161 | Msa0421090:intron | 25.0% |
| ! | ATCATATACTAACTTATTGC+TGG | - | chr3_2:69982290-69982309 | None:intergenic | 25.0% |
| ! | AAGTTAGTATATGATAGTCT+TGG | + | chr3_2:69982295-69982314 | Msa0421090:intron | 25.0% |
| !!! | TTCCTAGTCATTTTACTTTT+GGG | + | chr3_2:69982366-69982385 | Msa0421090:intron | 25.0% |
| ! | TACAAATCATTCAAAGACAA+AGG | - | chr3_2:69982470-69982489 | None:intergenic | 25.0% |
| ! | CACACAAATAGAGTTAAAAA+AGG | - | chr3_2:69982558-69982577 | None:intergenic | 25.0% |
| ! | GAAACTAGTACAAGTATTAT+TGG | - | chr3_2:69982908-69982927 | None:intergenic | 25.0% |
| !! | AAAAGCCTTATATCTCATTA+AGG | - | chr3_2:69982942-69982961 | None:intergenic | 25.0% |
| !! | TAATGAGATATAAGGCTTTT+AGG | + | chr3_2:69982942-69982961 | Msa0421090:intron | 25.0% |
| ! | TTGTTTCCATCTTAAATTGT+TGG | + | chr3_2:69982968-69982987 | Msa0421090:intron | 25.0% |
| ! | ATGATTCCAACAATTTAAGA+TGG | - | chr3_2:69982977-69982996 | None:intergenic | 25.0% |
| ! | AAAATACAATCATGACAATC+AGG | + | chr3_2:69983343-69983362 | Msa0421090:three_prime_UTR | 25.0% |
| ! | GTAATGTAATAAGTAGTAAG+GGG | - | chr3_2:69983507-69983526 | None:intergenic | 25.0% |
| ! | GGTAATGTAATAAGTAGTAA+GGG | - | chr3_2:69983508-69983527 | None:intergenic | 25.0% |
| ! | AGGTAATGTAATAAGTAGTA+AGG | - | chr3_2:69983509-69983528 | None:intergenic | 25.0% |
| !! | ATTTTGTTACATAAGCTTCA+TGG | - | chr3_2:69983652-69983671 | None:intergenic | 25.0% |
| ! | TTGAAGTAACATTATTGTCA+TGG | - | chr3_2:69983678-69983697 | None:intergenic | 25.0% |
| ! | GTATACATGCTTAGATATTT+AGG | + | chr3_2:69983700-69983719 | Msa0421090:three_prime_UTR | 25.0% |
| !! | TATTTAGGATGTTCTATTCT+AGG | + | chr3_2:69983715-69983734 | Msa0421090:three_prime_UTR | 25.0% |
| ! | TACTCTTATAGACTTCAAAT+TGG | + | chr3_2:69983746-69983765 | Msa0421090:three_prime_UTR | 25.0% |
| GAAACCAATTGAATATCTTC+AGG | + | chr3_2:69979883-69979902 | Msa0421090:CDS | 30.0% | |
| TGATATTTGATGGAATGGAT+TGG | + | chr3_2:69980095-69980114 | Msa0421090:intron | 30.0% | |
| TTTGAAGGATTGAATGGTAA+AGG | - | chr3_2:69980205-69980224 | None:intergenic | 30.0% | |
| ! | TATACAGAGCATTATGTAAG+GGG | - | chr3_2:69980324-69980343 | None:intergenic | 30.0% |
| !!! | AGCTTTACTTTTTTAGTCTC+AGG | + | chr3_2:69980399-69980418 | Msa0421090:intron | 30.0% |
| AAAGATCTTATAAATGGGGA+TGG | - | chr3_2:69980505-69980524 | None:intergenic | 30.0% | |
| ATCTCTCATAAAGGTAAACA+TGG | + | chr3_2:69980662-69980681 | Msa0421090:intron | 30.0% | |
| ! | ATTCACGTGTTTTTCTCTAA+AGG | + | chr3_2:69980734-69980753 | Msa0421090:intron | 30.0% |
| ! | TTCACGTGTTTTTCTCTAAA+GGG | + | chr3_2:69980735-69980754 | Msa0421090:intron | 30.0% |
| ! | ACGGATAGAGTATTAACTTA+TGG | - | chr3_2:69980800-69980819 | None:intergenic | 30.0% |
| !! | GTTCTATTTGAGTTTTACAC+GGG | + | chr3_2:69980832-69980851 | Msa0421090:intron | 30.0% |
| CATACAAACAAAGGACAATT+TGG | - | chr3_2:69981041-69981060 | None:intergenic | 30.0% | |
| ! | TTAGGGGTATATTTGAAAAG+GGG | + | chr3_2:69981111-69981130 | Msa0421090:intron | 30.0% |
| TCAAATAGGTGCTTAGATAT+AGG | + | chr3_2:69981159-69981178 | Msa0421090:intron | 30.0% | |
| CAAATAGGTGCTTAGATATA+GGG | + | chr3_2:69981160-69981179 | Msa0421090:intron | 30.0% | |
| CATTCCATTGTTTGGAAATT+GGG | - | chr3_2:69981446-69981465 | None:intergenic | 30.0% | |
| CATCATAAAGTAACCAAACA+AGG | + | chr3_2:69981482-69981501 | Msa0421090:intron | 30.0% | |
| TAAAGTAACCAAACAAGGAA+TGG | + | chr3_2:69981487-69981506 | Msa0421090:intron | 30.0% | |
| ! | TGAAATATAATGGAATGGAG+CGG | - | chr3_2:69981528-69981547 | None:intergenic | 30.0% |
| GAGAGCAGAATGAAATATAA+TGG | - | chr3_2:69981538-69981557 | None:intergenic | 30.0% | |
| TTTGGATTAATGGAACAGAA+CGG | - | chr3_2:69981563-69981582 | None:intergenic | 30.0% | |
| AACAAAAATTAGGCTCTGTT+TGG | - | chr3_2:69981581-69981600 | None:intergenic | 30.0% | |
| ! | TATTTGCTAAAGGTGGAATA+GGG | - | chr3_2:69981667-69981686 | None:intergenic | 30.0% |
| ! | TTATTTGCTAAAGGTGGAAT+AGG | - | chr3_2:69981668-69981687 | None:intergenic | 30.0% |
| ! | CCAAATTTATTTGCTAAAGG+TGG | - | chr3_2:69981674-69981693 | None:intergenic | 30.0% |
| CCACCTTTAGCAAATAAATT+TGG | + | chr3_2:69981671-69981690 | Msa0421090:CDS | 30.0% | |
| ! | TGGCCAAATTTATTTGCTAA+AGG | - | chr3_2:69981677-69981696 | None:intergenic | 30.0% |
| CAAATAAATTTGGCCATAAC+TGG | + | chr3_2:69981681-69981700 | Msa0421090:CDS | 30.0% | |
| ! | GATATAAACAGATATTGGCT+TGG | - | chr3_2:69981816-69981835 | None:intergenic | 30.0% |
| !! | CTTCCTAGTCATTTTACTTT+TGG | + | chr3_2:69982365-69982384 | Msa0421090:intron | 30.0% |
| TTCCCAAAAGTAAAATGACT+AGG | - | chr3_2:69982371-69982390 | None:intergenic | 30.0% | |
| TAGCAAACATTCAAACACAA+TGG | - | chr3_2:69982513-69982532 | None:intergenic | 30.0% | |
| AACAATTCTTCATAATTCGG+TGG | - | chr3_2:69982677-69982696 | None:intergenic | 30.0% | |
| AATAAAGATATCAGCTGAAC+AGG | - | chr3_2:69982716-69982735 | None:intergenic | 30.0% | |
| TCTGACCTTAATGAGATATA+AGG | + | chr3_2:69982934-69982953 | Msa0421090:intron | 30.0% | |
| CTGTGCAAGTCATAAATATA+TGG | + | chr3_2:69983029-69983048 | Msa0421090:intron | 30.0% | |
| GAAAAGGATCATCTTCATAA+CGG | - | chr3_2:69983084-69983103 | None:intergenic | 30.0% | |
| !!! | ATCTTGTTCTTGTTTTCTCA+TGG | - | chr3_2:69983145-69983164 | None:intergenic | 30.0% |
| TGATCATCTGTTATGTGAAA+CGG | - | chr3_2:69983284-69983303 | None:intergenic | 30.0% | |
| ! | GTCATGATTGTATTTTTCCA+GGG | - | chr3_2:69983339-69983358 | None:intergenic | 30.0% |
| ! | TGTCATGATTGTATTTTTCC+AGG | - | chr3_2:69983340-69983359 | None:intergenic | 30.0% |
| !! | TTACATTACCTTTGAAGCAA+AGG | + | chr3_2:69983518-69983537 | Msa0421090:three_prime_UTR | 30.0% |
| CTTGAAAAGAAATTTGGCAT+AGG | - | chr3_2:69983825-69983844 | None:intergenic | 30.0% | |
| TTGAAGAATGTCGATGGAAT+TGG | + | chr3_2:69979727-69979746 | Msa0421090:exon | 35.0% | |
| !! | TTTGATGGAATGGATTGGAT+TGG | + | chr3_2:69980100-69980119 | Msa0421090:intron | 35.0% |
| CAAACAAACAAGTAAGCGAA+TGG | + | chr3_2:69980147-69980166 | Msa0421090:intron | 35.0% | |
| TGGAGTGAAATGTAACACAA+TGG | + | chr3_2:69980167-69980186 | Msa0421090:intron | 35.0% | |
| AAGGATTGAATGGTAAAGGA+TGG | - | chr3_2:69980201-69980220 | None:intergenic | 35.0% | |
| GAGGGAATGAAACAATTTGA+AGG | - | chr3_2:69980220-69980239 | None:intergenic | 35.0% | |
| CATTTAGTAGGAGGGTAAAA+GGG | - | chr3_2:69980285-69980304 | None:intergenic | 35.0% | |
| ACATTTAGTAGGAGGGTAAA+AGG | - | chr3_2:69980286-69980305 | None:intergenic | 35.0% | |
| !! | TCACGTGTTTTTCTCTAAAG+GGG | + | chr3_2:69980736-69980755 | Msa0421090:intron | 35.0% |
| TAAAGGGGGTCCTATATTTA+GGG | + | chr3_2:69980751-69980770 | Msa0421090:intron | 35.0% | |
| ATAGAACAACTACAGTGAGA+CGG | - | chr3_2:69980819-69980838 | None:intergenic | 35.0% | |
| !! | TTTGAGTTTTACACGGGTTA+AGG | + | chr3_2:69980838-69980857 | Msa0421090:intron | 35.0% |
| ! | AATAGATAAGGGTATGTCAG+TGG | + | chr3_2:69981208-69981227 | Msa0421090:intron | 35.0% |
| CCATTCCATTGTTTGGAAAT+TGG | - | chr3_2:69981447-69981466 | None:intergenic | 35.0% | |
| CCAATTTCCAAACAATGGAA+TGG | + | chr3_2:69981444-69981463 | Msa0421090:intron | 35.0% | |
| CAAAGATTCCATTCCTTGTT+TGG | - | chr3_2:69981498-69981517 | None:intergenic | 35.0% | |
| TTAGGCTCTGTTTGGATTAA+TGG | - | chr3_2:69981573-69981592 | None:intergenic | 35.0% | |
| !! | TGCTTTGGAAAAGTACAACA+AGG | + | chr3_2:69981763-69981782 | Msa0421090:CDS | 35.0% |
| AAAGTACAACAAGGACAATC+AGG | + | chr3_2:69981772-69981791 | Msa0421090:CDS | 35.0% | |
| !! | ATAAACAGATATTGGCTTGG+TGG | - | chr3_2:69981813-69981832 | None:intergenic | 35.0% |
| GCCATTAGTCATATTCCTTT+AGG | + | chr3_2:69981919-69981938 | Msa0421090:CDS | 35.0% | |
| GCCTAAAGGAATATGACTAA+TGG | - | chr3_2:69981923-69981942 | None:intergenic | 35.0% | |
| !! | GTGTGTGTGTTAGGTTTTAA+TGG | - | chr3_2:69982070-69982089 | None:intergenic | 35.0% |
| GACTTTCTTGATCAGAAGTT+GGG | - | chr3_2:69982238-69982257 | None:intergenic | 35.0% | |
| TGACTTTCTTGATCAGAAGT+TGG | - | chr3_2:69982239-69982258 | None:intergenic | 35.0% | |
| !! | TATTGCTGGTTTGTGCTATT+TGG | - | chr3_2:69982276-69982295 | None:intergenic | 35.0% |
| ! | ACTTTTCGAATGTTACGCTT+GGG | + | chr3_2:69982403-69982422 | Msa0421090:intron | 35.0% |
| GACAAGAAAATTCAGATCTC+AGG | - | chr3_2:69982764-69982783 | None:intergenic | 35.0% | |
| CTTGCTAACAAATGTCCTTA+GGG | - | chr3_2:69982883-69982902 | None:intergenic | 35.0% | |
| TCTTGCTAACAAATGTCCTT+AGG | - | chr3_2:69982884-69982903 | None:intergenic | 35.0% | |
| AAATTGCAGACACGTGAAAA+AGG | - | chr3_2:69983106-69983125 | None:intergenic | 35.0% | |
| ATGATGATCCTTTGCTTCAA+AGG | - | chr3_2:69983529-69983548 | None:intergenic | 35.0% | |
| CGACATTCTTCAACACTTGA+CGG | - | chr3_2:69979720-69979739 | None:intergenic | 40.0% | |
| !! | CAAGTGTTGAAGAATGTCGA+TGG | + | chr3_2:69979721-69979740 | Msa0421090:exon | 40.0% |
| GAATTGGATACAGTGTTGCA+CGG | + | chr3_2:69979743-69979762 | Msa0421090:CDS | 40.0% | |
| AAAAGCGAAGCGGCAAAAAA+CGG | + | chr3_2:69979799-69979818 | Msa0421090:CDS | 40.0% | |
| GCAAAAAACGGAACCAGAAT+CGG | + | chr3_2:69979811-69979830 | Msa0421090:CDS | 40.0% | |
| ATCGGATTCGGAATCTGATT+CGG | + | chr3_2:69979829-69979848 | Msa0421090:CDS | 40.0% | |
| ! | ACGAAAAATAGCGGGGAATA+GGG | - | chr3_2:69979925-69979944 | None:intergenic | 40.0% |
| ACAAGAAGAGGCTGAAGAAA+AGG | + | chr3_2:69979982-69980001 | Msa0421090:CDS | 40.0% | |
| ACGTACACTTATGTTACGAG+CGG | - | chr3_2:69980029-69980048 | None:intergenic | 40.0% | |
| ! | TTTTTCTCTCCCTCTCTCTT+AGG | + | chr3_2:69980050-69980069 | Msa0421090:intron | 40.0% |
| CTTAGGACTTAGGCTATGTT+TGG | + | chr3_2:69980067-69980086 | Msa0421090:intron | 40.0% | |
| CATTGCATACGTCTAACAGA+GGG | - | chr3_2:69980238-69980257 | None:intergenic | 40.0% | |
| GCTGAACACATTTAGTAGGA+GGG | - | chr3_2:69980293-69980312 | None:intergenic | 40.0% | |
| TGCTGAACACATTTAGTAGG+AGG | - | chr3_2:69980294-69980313 | None:intergenic | 40.0% | |
| TCGTGCTGAACACATTTAGT+AGG | - | chr3_2:69980297-69980316 | None:intergenic | 40.0% | |
| GATCTTATAAATGGGGATGG+AGG | - | chr3_2:69980502-69980521 | None:intergenic | 40.0% | |
| ! | AAATTGGATCAGGGGTATAG+TGG | - | chr3_2:69980602-69980621 | None:intergenic | 40.0% |
| !! | CACGTGTTTTTCTCTAAAGG+GGG | + | chr3_2:69980737-69980756 | Msa0421090:intron | 40.0% |
| CTAAAGGGGGTCCTATATTT+AGG | + | chr3_2:69980750-69980769 | Msa0421090:intron | 40.0% | |
| AAAGGGGGTCCTATATTTAG+GGG | + | chr3_2:69980752-69980771 | Msa0421090:intron | 40.0% | |
| TAGGTGCTTAGATATAGGGA+CGG | + | chr3_2:69981164-69981183 | Msa0421090:intron | 40.0% | |
| TGTTTGGAAATTGGGTGGAA+CGG | - | chr3_2:69981438-69981457 | None:intergenic | 40.0% | |
| TCCACCCAATTTCCAAACAA+TGG | + | chr3_2:69981439-69981458 | Msa0421090:intron | 40.0% | |
| TCCATTGTTTGGAAATTGGG+TGG | - | chr3_2:69981443-69981462 | None:intergenic | 40.0% | |
| ! | TATAATGGAATGGAGCGGAA+TGG | - | chr3_2:69981523-69981542 | None:intergenic | 40.0% |
| ! | GTACTTTTCCAAAGCACACT+TGG | - | chr3_2:69981759-69981778 | None:intergenic | 40.0% |
| ! | GGGTTTGAAGTACGAGTTTA+AGG | + | chr3_2:69981882-69981901 | Msa0421090:intron | 40.0% |
| GTAATGTAGTAGCTGCCTAA+AGG | - | chr3_2:69981937-69981956 | None:intergenic | 40.0% | |
| !!! | TGGTTTTGGTGTTGCTTTGA+AGG | - | chr3_2:69981959-69981978 | None:intergenic | 40.0% |
| !!! | GGATGAACATCTTCTGGTTT+TGG | - | chr3_2:69981973-69981992 | None:intergenic | 40.0% |
| TTGGAAGGATGAACATCTTC+TGG | - | chr3_2:69981979-69981998 | None:intergenic | 40.0% | |
| ! | CACTTTTCGAATGTTACGCT+TGG | + | chr3_2:69982402-69982421 | Msa0421090:intron | 40.0% |
| AACAAAATGCTTGGGGACAA+TGG | - | chr3_2:69982432-69982451 | None:intergenic | 40.0% | |
| ! | TCTTCATAATTCGGTGGTAG+CGG | - | chr3_2:69982671-69982690 | None:intergenic | 40.0% |
| TATCCTTAACAAGTGCCCTA+AGG | + | chr3_2:69982865-69982884 | Msa0421090:intron | 40.0% | |
| CAGACACGTGAAAAAGGAAA+AGG | - | chr3_2:69983100-69983119 | None:intergenic | 40.0% | |
| ! | CATTTGCTAAGGTTGGAACA+GGG | - | chr3_2:69983238-69983257 | None:intergenic | 40.0% |
| ! | ACATTTGCTAAGGTTGGAAC+AGG | - | chr3_2:69983239-69983258 | None:intergenic | 40.0% |
| ! | CCACATACATTTGCTAAGGT+TGG | - | chr3_2:69983245-69983264 | None:intergenic | 40.0% |
| CCAACCTTAGCAAATGTATG+TGG | + | chr3_2:69983242-69983261 | Msa0421090:three_prime_UTR | 40.0% | |
| ! | GTTGCCACATACATTTGCTA+AGG | - | chr3_2:69983249-69983268 | None:intergenic | 40.0% |
| TCTGTTATGTGAAACGGTCT+GGG | - | chr3_2:69983278-69983297 | None:intergenic | 40.0% | |
| ATCTGTTATGTGAAACGGTC+TGG | - | chr3_2:69983279-69983298 | None:intergenic | 40.0% | |
| ! | GTATTTTTCCAGGGCAAGTT+TGG | - | chr3_2:69983330-69983349 | None:intergenic | 40.0% |
| AAGGTCAACAAACTCGTACT+TGG | - | chr3_2:69983460-69983479 | None:intergenic | 40.0% | |
| GTTGGAAGGATGAACATGAT+GGG | - | chr3_2:69983553-69983572 | None:intergenic | 40.0% | |
| AGTTGGAAGGATGAACATGA+TGG | - | chr3_2:69983554-69983573 | None:intergenic | 40.0% | |
| GAAAGTAATAGCAGGGAAGT+TGG | - | chr3_2:69983571-69983590 | None:intergenic | 40.0% | |
| AACGGAACCAGAATCGGATT+CGG | + | chr3_2:69979817-69979836 | Msa0421090:CDS | 45.0% | |
| TCAGATTCCGAATCCGATTC+TGG | - | chr3_2:69979827-69979846 | None:intergenic | 45.0% | |
| !! | TTCGGAATCTGATTCGGAAC+CGG | + | chr3_2:69979835-69979854 | Msa0421090:CDS | 45.0% |
| GGAACCGGAACCAATTGATT+GGG | + | chr3_2:69979850-69979869 | Msa0421090:CDS | 45.0% | |
| ! | CAGTCCCAATCAATTGGTTC+CGG | - | chr3_2:69979857-69979876 | None:intergenic | 45.0% |
| GGAACCAATTGATTGGGACT+GGG | + | chr3_2:69979856-69979875 | Msa0421090:CDS | 45.0% | |
| GATACCCAGTCCCAATCAAT+TGG | - | chr3_2:69979863-69979882 | None:intergenic | 45.0% | |
| ! | CACGAAAAATAGCGGGGAAT+AGG | - | chr3_2:69979926-69979945 | None:intergenic | 45.0% |
| AGCGCGTACACGAAAAATAG+CGG | - | chr3_2:69979934-69979953 | None:intergenic | 45.0% | |
| AGTCGTGAGAGAACAAGAAG+AGG | + | chr3_2:69979970-69979989 | Msa0421090:CDS | 45.0% | |
| GGTCTTCAAATACTCAGCGA+CGG | - | chr3_2:69980008-69980027 | None:intergenic | 45.0% | |
| AGCCTAAGTCCTAAGAGAGA+GGG | - | chr3_2:69980062-69980081 | None:intergenic | 45.0% | |
| TAGCCTAAGTCCTAAGAGAG+AGG | - | chr3_2:69980063-69980082 | None:intergenic | 45.0% | |
| CCATTGCATACGTCTAACAG+AGG | - | chr3_2:69980239-69980258 | None:intergenic | 45.0% | |
| CCTCTGTTAGACGTATGCAA+TGG | + | chr3_2:69980236-69980255 | Msa0421090:intron | 45.0% | |
| CTACCTCTGCCCCTAAATAT+AGG | - | chr3_2:69980764-69980783 | None:intergenic | 45.0% | |
| GCAAAAGGGGCTTACATACA+GGG | - | chr3_2:69980952-69980971 | None:intergenic | 45.0% | |
| AGCAAAAGGGGCTTACATAC+AGG | - | chr3_2:69980953-69980972 | None:intergenic | 45.0% | |
| GGATTAATGGAACAGAACGG+AGG | - | chr3_2:69981560-69981579 | None:intergenic | 45.0% | |
| ! | GGAATAGGGATAGCATCGAA+GGG | - | chr3_2:69981653-69981672 | None:intergenic | 45.0% |
| ! | TGGAATAGGGATAGCATCGA+AGG | - | chr3_2:69981654-69981673 | None:intergenic | 45.0% |
| TCGTGATCGTCTATAGGAAC+GGG | - | chr3_2:69981713-69981732 | None:intergenic | 45.0% | |
| CTCGTGATCGTCTATAGGAA+CGG | - | chr3_2:69981714-69981733 | None:intergenic | 45.0% | |
| TTGGAGAGTCGAATGAGAAG+TGG | - | chr3_2:69981740-69981759 | None:intergenic | 45.0% | |
| CGAGTTTAAGGAGCTTGTCA+AGG | + | chr3_2:69981894-69981913 | Msa0421090:CDS | 45.0% | |
| ATGGAACACGACTTGATCAC+AGG | - | chr3_2:69982051-69982070 | None:intergenic | 45.0% | |
| AACCTAACACACACACACCA+TGG | + | chr3_2:69982074-69982093 | Msa0421090:exon | 45.0% | |
| TACCATGGTGTGTGTGTGTT+AGG | - | chr3_2:69982079-69982098 | None:intergenic | 45.0% | |
| ACAATGGATGCATACTACGC+AGG | - | chr3_2:69982497-69982516 | None:intergenic | 45.0% | |
| ! | TGTCCTTAGGGCACTTGTTA+AGG | - | chr3_2:69982871-69982890 | None:intergenic | 45.0% |
| !! | CGAGTTTGTTGACCTTGTCA+AGG | + | chr3_2:69983464-69983483 | Msa0421090:three_prime_UTR | 45.0% |
| ACCTTGTCAAGGCAACTAAG+AGG | + | chr3_2:69983475-69983494 | Msa0421090:three_prime_UTR | 45.0% | |
| GTAATAGCAGGGAAGTTGGA+AGG | - | chr3_2:69983567-69983586 | None:intergenic | 45.0% | |
| CTTCCCTGCTATTACTTTCC+TGG | + | chr3_2:69983572-69983591 | Msa0421090:three_prime_UTR | 45.0% | |
| TGGCCAGGAAAGTAATAGCA+GGG | - | chr3_2:69983578-69983597 | None:intergenic | 45.0% | |
| TTGGCCAGGAAAGTAATAGC+AGG | - | chr3_2:69983579-69983598 | None:intergenic | 45.0% | |
| !! | ATTAAATTAAAACAAAAATT+AGG | - | chr3_2:69981591-69981610 | None:intergenic | 5.0% |
| ! | TTTTCCTCGCAGCTTTCCAG+AGG | - | chr3_2:69979782-69979801 | None:intergenic | 50.0% |
| CGGAACCGGAACCAATTGAT+TGG | + | chr3_2:69979849-69979868 | Msa0421090:CDS | 50.0% | |
| CGGAACCAATTGATTGGGAC+TGG | + | chr3_2:69979855-69979874 | Msa0421090:CDS | 50.0% | |
| CGCGTACACGAAAAATAGCG+GGG | - | chr3_2:69979932-69979951 | None:intergenic | 50.0% | |
| GCGCGTACACGAAAAATAGC+GGG | - | chr3_2:69979933-69979952 | None:intergenic | 50.0% | |
| CTCCCTCTCTCTTAGGACTT+AGG | + | chr3_2:69980057-69980076 | Msa0421090:intron | 50.0% | |
| GGTCCTATATTTAGGGGCAG+AGG | + | chr3_2:69980758-69980777 | Msa0421090:intron | 50.0% | |
| GGCTTACATACAGGGACAGA+GGG | - | chr3_2:69980944-69980963 | None:intergenic | 50.0% | |
| GTGCTTAGATATAGGGACGG+AGG | + | chr3_2:69981167-69981186 | Msa0421090:intron | 50.0% | |
| TCGTCTATAGGAACGGGTCT+GGG | - | chr3_2:69981707-69981726 | None:intergenic | 50.0% | |
| ATCGTCTATAGGAACGGGTC+TGG | - | chr3_2:69981708-69981727 | None:intergenic | 50.0% | |
| TCGACTCTCCAAGTGTGCTT+TGG | + | chr3_2:69981748-69981767 | Msa0421090:CDS | 50.0% | |
| CACGACTTGATCACAGGTTC+AGG | - | chr3_2:69982045-69982064 | None:intergenic | 50.0% | |
| ! | GGAACAGGGATAGCATCGAA+GGG | - | chr3_2:69983224-69983243 | None:intergenic | 50.0% |
| ! | TGGAACAGGGATAGCATCGA+AGG | - | chr3_2:69983225-69983244 | None:intergenic | 50.0% |
| TTTCCAGGGCAAGTTTGGAG+AGG | - | chr3_2:69983325-69983344 | None:intergenic | 50.0% | |
| GCCTCTTAGTTGCCTTGACA+AGG | - | chr3_2:69983479-69983498 | None:intergenic | 50.0% | |
| TACTTTCCTGGCCAACGTCT+AGG | + | chr3_2:69983584-69983603 | Msa0421090:three_prime_UTR | 50.0% | |
| ATGGAACACGACTCAACCAC+AGG | - | chr3_2:69983633-69983652 | None:intergenic | 50.0% | |
| GCTGCGAGGAAAAAGCGAAG+CGG | + | chr3_2:69979789-69979808 | Msa0421090:CDS | 55.0% | |
| GGGCTTACATACAGGGACAG+AGG | - | chr3_2:69980945-69980964 | None:intergenic | 55.0% | |
| GGCTGCTCGTGATCGTCTAT+AGG | - | chr3_2:69981719-69981738 | None:intergenic | 55.0% | |
| GAAAGTGGCAGCAGACGTGT+TGG | - | chr3_2:69981998-69982017 | None:intergenic | 55.0% | |
| ACAGACGTGGGTCTGGAAAG+TGG | - | chr3_2:69982013-69982032 | None:intergenic | 55.0% | |
| TACAGTCACAGACGTGGGTC+TGG | - | chr3_2:69982020-69982039 | None:intergenic | 55.0% | |
| AGACCCACGTCTGTGACTGT+AGG | + | chr3_2:69982019-69982038 | Msa0421090:CDS | 55.0% | |
| AGGCCTACAGTCACAGACGT+GGG | - | chr3_2:69982025-69982044 | None:intergenic | 55.0% | |
| ! | AACGTCTAGGACAGGTTGCC+CGG | + | chr3_2:69983597-69983616 | Msa0421090:three_prime_UTR | 55.0% |
| AACCACAGGTGGTCCAATGC+CGG | - | chr3_2:69983619-69983638 | None:intergenic | 55.0% | |
| GAACACGACTCAACCACAGG+TGG | - | chr3_2:69983630-69983649 | None:intergenic | 55.0% | |
| GCAGCTTTCCAGAGGAGGTG+GGG | - | chr3_2:69979774-69979793 | None:intergenic | 60.0% | |
| CGCAGCTTTCCAGAGGAGGT+GGG | - | chr3_2:69979775-69979794 | None:intergenic | 60.0% | |
| TCGCAGCTTTCCAGAGGAGG+TGG | - | chr3_2:69979776-69979795 | None:intergenic | 60.0% | |
| ! | ACCTCCTCTGGAAAGCTGCG+AGG | + | chr3_2:69979775-69979794 | Msa0421090:CDS | 60.0% |
| TCCTCGCAGCTTTCCAGAGG+AGG | - | chr3_2:69979779-69979798 | None:intergenic | 60.0% | |
| GAACGGGTCTGGGCCAGTTA+TGG | - | chr3_2:69981697-69981716 | None:intergenic | 60.0% | |
| GTGGCAGCAGACGTGTTGGA+AGG | - | chr3_2:69981994-69982013 | None:intergenic | 60.0% | |
| CAGGCCTACAGTCACAGACG+TGG | - | chr3_2:69982026-69982045 | None:intergenic | 60.0% | |
| CGACCTCTCCAAACTTGCCC+TGG | + | chr3_2:69983319-69983338 | Msa0421090:three_prime_UTR | 60.0% | |
| ! | TCCTGGCCAACGTCTAGGAC+AGG | + | chr3_2:69983589-69983608 | Msa0421090:three_prime_UTR | 60.0% |
| ACCTGTCCTAGACGTTGGCC+AGG | - | chr3_2:69983593-69983612 | None:intergenic | 60.0% | |
| GGGCAACCTGTCCTAGACGT+TGG | - | chr3_2:69983598-69983617 | None:intergenic | 60.0% | |
| TAGGACAGGTTGCCCGGCAT+TGG | + | chr3_2:69983603-69983622 | Msa0421090:three_prime_UTR | 60.0% | |
| ACCACAGGTGGTCCAATGCC+GGG | - | chr3_2:69983618-69983637 | None:intergenic | 60.0% | |
| ! | GCCCGGCATTGGACCACCTG+TGG | + | chr3_2:69983614-69983633 | Msa0421090:three_prime_UTR | 70.0% |
| CGGCGTCACCCCACCTCCTC+TGG | + | chr3_2:69979763-69979782 | Msa0421090:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 69979686 | 69983859 | 69979686 | ID=Msa0421090;Name=Msa0421090 |
| chr3_2 | mRNA | 69979686 | 69983859 | 69979686 | ID=Msa0421090-mRNA-1;Parent=Msa0421090;Name=Msa0421090-mRNA-1;_AED=0.14;_eAED=0.14;_QI=48|1|1|1|0.75|0.8|5|566|216 |
| chr3_2 | exon | 69979686 | 69980042 | 69979686 | ID=Msa0421090-mRNA-1:exon:16637;Parent=Msa0421090-mRNA-1 |
| chr3_2 | exon | 69981650 | 69981793 | 69981650 | ID=Msa0421090-mRNA-1:exon:16638;Parent=Msa0421090-mRNA-1 |
| chr3_2 | exon | 69981883 | 69982095 | 69981883 | ID=Msa0421090-mRNA-1:exon:16639;Parent=Msa0421090-mRNA-1 |
| chr3_2 | exon | 69983221 | 69983364 | 69983221 | ID=Msa0421090-mRNA-1:exon:16640;Parent=Msa0421090-mRNA-1 |
| chr3_2 | exon | 69983453 | 69983859 | 69983453 | ID=Msa0421090-mRNA-1:exon:16641;Parent=Msa0421090-mRNA-1 |
| chr3_2 | five_prime_UTR | 69979686 | 69979733 | 69979686 | ID=Msa0421090-mRNA-1:five_prime_utr;Parent=Msa0421090-mRNA-1 |
| chr3_2 | CDS | 69979734 | 69980042 | 69979734 | ID=Msa0421090-mRNA-1:cds;Parent=Msa0421090-mRNA-1 |
| chr3_2 | CDS | 69981650 | 69981793 | 69981650 | ID=Msa0421090-mRNA-1:cds;Parent=Msa0421090-mRNA-1 |
| chr3_2 | CDS | 69981883 | 69982080 | 69981883 | ID=Msa0421090-mRNA-1:cds;Parent=Msa0421090-mRNA-1 |
| chr3_2 | three_prime_UTR | 69982081 | 69982095 | 69982081 | ID=Msa0421090-mRNA-1:three_prime_utr;Parent=Msa0421090-mRNA-1 |
| chr3_2 | three_prime_UTR | 69983221 | 69983364 | 69983221 | ID=Msa0421090-mRNA-1:three_prime_utr;Parent=Msa0421090-mRNA-1 |
| chr3_2 | three_prime_UTR | 69983453 | 69983859 | 69983453 | ID=Msa0421090-mRNA-1:three_prime_utr;Parent=Msa0421090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
