AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0423060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0423060 MtrunA17_Chr3g0123661 94.371 533 30 0 1 533 1 533 0.0 1040
Msa0423060 MtrunA17_Chr5g0425361 49.790 476 233 4 33 505 35 507 3.87e-170 491
Msa0423060 MtrunA17_Chr5g0425401 47.368 475 246 2 33 505 33 505 4.27e-164 475
Msa0423060 MtrunA17_Chr3g0079451 48.312 474 234 7 36 505 7 473 4.20e-157 457
Msa0423060 MtrunA17_Chr3g0079461 49.156 474 230 8 36 505 31 497 4.36e-156 454
Msa0423060 MtrunA17_Chr8g0382641 46.215 502 255 8 11 505 13 506 2.72e-154 450
Msa0423060 MtrunA17_Chr3g0079441 45.562 507 256 10 3 505 1 491 1.62e-151 442
Msa0423060 MtrunA17_Chr3g0079431 47.158 475 240 8 33 505 24 489 1.91e-150 440
Msa0423060 MtrunA17_Chr5g0425351 37.004 227 101 2 221 447 20 204 1.06e-41 148
Msa0423060 MtrunA17_Chr5g0425301 40.260 77 46 0 376 452 1 77 3.45e-15 70.9
Msa0423060 MtrunA17_Chr5g0425291 46.875 64 33 1 209 272 10 72 1.25e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 163 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTATGCTCCATTCCATTT+TGG 0.078300 3_2:-72732137 None:intergenic
TTTCCTTTGGTTGGTGTTAT+TGG 0.089715 3_2:+72733520 Msa0423060:CDS
GATCCTCCAAGTCCATTTAT+TGG 0.234600 3_2:+72731923 Msa0423060:CDS
CATCTTCATGGGAAACATTC+AGG 0.242720 3_2:+72730408 Msa0423060:CDS
CTCTGCCATTAACTTTATAT+TGG 0.245071 3_2:+72733835 Msa0423060:three_prime_UTR
AATTTCCAATATAAAGTTAA+TGG 0.250672 3_2:-72733840 None:intergenic
CAAAGTCTTGATAATCTGTT+AGG 0.251151 3_2:-72733467 None:intergenic
GCTGCTCCCGGTTCCCAAAA+TGG 0.255158 3_2:+72732123 Msa0423060:CDS
ATATACACTTTGGGACTCTT+TGG 0.258550 3_2:+72733713 Msa0423060:CDS
AGAGCGCCGAAGATGTTCTT+AGG 0.277195 3_2:+72731256 Msa0423060:CDS
TGCAAAGCATCCTGCCTTGC+TGG 0.282128 3_2:+72732503 Msa0423060:CDS
TCAAGACTTCCTCCAATAAA+TGG 0.284259 3_2:-72731935 None:intergenic
AGGATCTACCAACTTAGTTT+TGG 0.303072 3_2:+72732695 Msa0423060:CDS
AGGAACAACTATCTTCAATT+AGG 0.303188 3_2:+72733588 Msa0423060:CDS
ATCAAACCTTCTTTGTTTGA+TGG 0.306412 3_2:+72729569 Msa0423060:CDS
CATGGTGGATTTAAAGTTAG+AGG 0.345081 3_2:+72729509 Msa0423060:CDS
CCACCGTCACATGTAAGAAA+TGG 0.346802 3_2:-72730761 None:intergenic
ACGAATATTTCCGAACGATT+TGG 0.348623 3_2:-72732602 None:intergenic
ATGGTGGTTGGTGGTGGATA+AGG 0.352591 3_2:-72728942 None:intergenic
GTCCATAACCATTTGCTAAC+TGG 0.355159 3_2:-72731230 None:intergenic
TACCAGTTAGCAAATGGTTA+TGG 0.364366 3_2:+72731228 Msa0423060:CDS
CTCAGATAAAACTTATAAGT+TGG 0.379125 3_2:+72733915 Msa0423060:three_prime_UTR
TTGGTAGCCTTGCTTGTAAT+AGG 0.383961 3_2:-72732583 None:intergenic
ATCACTTCTGGAGTATATTC+AGG 0.384374 3_2:+72729366 Msa0423060:CDS
TGGAGTGGGAAGAGTATAAA+GGG 0.385584 3_2:-72729159 None:intergenic
TAACTTTCATTATCATTAGT+TGG 0.392223 3_2:-72729034 None:intergenic
ATTGAAGAATGCAATGATAT+AGG 0.393155 3_2:+72733860 Msa0423060:three_prime_UTR
AAAAGGGAAACTTTGCTTGT+GGG 0.393495 3_2:-72729120 None:intergenic
GGAGGGTGGCTTGTTATTGA+AGG 0.394104 3_2:+72729542 Msa0423060:CDS
GTGGAGTGGGAAGAGTATAA+AGG 0.398834 3_2:-72729160 None:intergenic
AATTGGCAATGCAGATCCTT+TGG 0.399729 3_2:+72732653 Msa0423060:CDS
GTCTATAATGCAGTTTCCTT+TGG 0.400560 3_2:+72733507 Msa0423060:CDS
CTAACAGATTATCAAGACTT+TGG 0.401986 3_2:+72733468 Msa0423060:CDS
ACAGGGATTCCCCATCTTCA+TGG 0.411267 3_2:+72730396 Msa0423060:CDS
AAGTCGGGAAGGTCTGTTGC+AGG 0.412693 3_2:+72732794 Msa0423060:CDS
CTTGGTGCTAGCATACTTGA+TGG 0.413312 3_2:+72729293 Msa0423060:intron
CACTTTGGGACTCTTTGGAT+TGG 0.416831 3_2:+72733718 Msa0423060:CDS
CTTCCTCCAATAAATGGACT+TGG 0.421956 3_2:-72731929 None:intergenic
TATCTTATCTAGATCTTCAA+TGG 0.422642 3_2:-72728961 None:intergenic
AATGACTTTGAAATGTAATC+TGG 0.425615 3_2:-72732195 None:intergenic
TTTCAATTCCGTACCAATCA+AGG 0.427838 3_2:+72730737 Msa0423060:CDS
AGTGTATATATTCTGATTGT+TGG 0.428231 3_2:-72733699 None:intergenic
AAGGATAAATACCTGCAGAT+AGG 0.428937 3_2:-72730888 None:intergenic
ATAATGCAGTTTCCTTTGGT+TGG 0.429534 3_2:+72733511 Msa0423060:CDS
TCTTTGGATTGGCTTTCACC+TGG 0.431793 3_2:+72733729 Msa0423060:CDS
AATATGTATCTGCAGACAAT+GGG 0.437341 3_2:+72730351 Msa0423060:CDS
TCAGATAAAACTTATAAGTT+GGG 0.438228 3_2:+72733916 Msa0423060:three_prime_UTR
ATAAATGGACTTGGAGGATC+AGG 0.438577 3_2:-72731920 None:intergenic
AAAGTTAGAGGAGTGAACTT+AGG 0.438588 3_2:+72729521 Msa0423060:CDS
TTATCATTAGTTGGACTTGA+AGG 0.444952 3_2:-72729025 None:intergenic
CAATCAGAATATATACACTT+TGG 0.445062 3_2:+72733703 Msa0423060:CDS
AATCAGAATATATACACTTT+GGG 0.445440 3_2:+72733704 Msa0423060:CDS
ATAAGTTGGGTTGATATTCA+AGG 0.446697 3_2:+72733929 Msa0423060:three_prime_UTR
GAAATGTAATCTGGAGAAGT+TGG 0.451317 3_2:-72732186 None:intergenic
CGGGCCATTTGAATTGTTGA+AGG 0.451769 3_2:-72732817 None:intergenic
GGTGGCTTGTTATTGAAGGT+TGG 0.451992 3_2:+72729546 Msa0423060:CDS
GTTAGAGGAGTGAACTTAGG+AGG 0.452306 3_2:+72729524 Msa0423060:CDS
TCATCCCACCCTGGTACGCC+TGG 0.454217 3_2:-72731153 None:intergenic
ATTGACCTTCATGCTGCTCC+CGG 0.455176 3_2:+72732111 Msa0423060:CDS
AGTGGACAACACAAAATTAG+TGG 0.459204 3_2:-72733994 None:intergenic
GAATGAATGTGACAGTTGAC+AGG 0.461483 3_2:+72730378 Msa0423060:CDS
TTTGAAGTGGAGGGGTTACA+TGG 0.465385 3_2:+72729491 Msa0423060:intron
CAGGCCTTCAACAATTCAAA+TGG 0.468996 3_2:+72732813 Msa0423060:CDS
TGTAAGAAATGGGCCTTGAT+TGG 0.469804 3_2:-72730750 None:intergenic
GATCTGCATTGCCAATTCTC+TGG 0.470111 3_2:-72732647 None:intergenic
GCAAAGCATCCTGCCTTGCT+GGG 0.470714 3_2:+72732504 Msa0423060:CDS
TTCTTTGTTAATATGAGTGC+TGG 0.472804 3_2:+72732747 Msa0423060:CDS
CTGAATGTTTCCCATGAAGA+TGG 0.473464 3_2:-72730407 None:intergenic
AAAGAAACTGTGCCAGATGA+TGG 0.474223 3_2:-72732546 None:intergenic
GTTCACATCAAGATAAAGAA+TGG 0.478186 3_2:+72730863 Msa0423060:CDS
CACCGTCACATGTAAGAAAT+GGG 0.480113 3_2:-72730760 None:intergenic
CTTGTTTCTTTGAAGTGGAG+GGG 0.480230 3_2:+72729483 Msa0423060:intron
CTATCTTTATAGGCTACAAC+TGG 0.482204 3_2:+72731108 Msa0423060:intron
GTGATAATGTGCCAGAGAAT+TGG 0.482707 3_2:+72732636 Msa0423060:CDS
AGCAAGGCTACCAAATCGTT+CGG 0.482834 3_2:+72732592 Msa0423060:CDS
GTTTACCCTAAGAACATCTT+CGG 0.484369 3_2:-72731262 None:intergenic
TCAAATGTCTCAGACGTTGA+AGG 0.487324 3_2:-72730815 None:intergenic
TACAATACATATTCAAAAGT+CGG 0.488429 3_2:+72732778 Msa0423060:CDS
GGAGATTACCAGTTAGCAAA+TGG 0.489034 3_2:+72731222 Msa0423060:CDS
AGGATAAATACCTGCAGATA+GGG 0.489280 3_2:-72730887 None:intergenic
GAAGGGAAAAGTGTCTCAAA+AGG 0.492249 3_2:-72729137 None:intergenic
TGAGGATACCGGTTGGGTGG+TGG 0.493251 3_2:+72731885 Msa0423060:CDS
ACAATACATATTCAAAAGTC+GGG 0.495085 3_2:+72732779 Msa0423060:CDS
CCTCCAATAAATGGACTTGG+AGG 0.495773 3_2:-72731926 None:intergenic
TGAATGTTTCCCATGAAGAT+GGG 0.498897 3_2:-72730406 None:intergenic
ATGCAAATCCAAAACTAAGT+TGG 0.500518 3_2:-72732703 None:intergenic
GTGTATATATTCTGATTGTT+GGG 0.500854 3_2:-72733698 None:intergenic
AGCTCAATTCCCAGCAAGGC+AGG 0.501113 3_2:-72732513 None:intergenic
TCTAGATCTTCAATGGTGGT+TGG 0.504632 3_2:-72728954 None:intergenic
CAGGAGAGTGGGTGAATGAG+TGG 0.505279 3_2:+72733427 Msa0423060:intron
GAGCTTTATCAAGCCAACAT+AGG 0.508387 3_2:+72732675 Msa0423060:CDS
CAGGGATTCCCCATCTTCAT+GGG 0.509969 3_2:+72730397 Msa0423060:CDS
TTGGTGCTAGCATACTTGAT+GGG 0.510478 3_2:+72729294 Msa0423060:intron
CAGCTTACAGCAGACTATCC+AGG 0.511302 3_2:+72731135 Msa0423060:CDS
AAAGCAATCCACCACCCAAC+CGG 0.513130 3_2:-72731893 None:intergenic
ATCTTCATGGGAAACATTCA+GGG 0.514450 3_2:+72730409 Msa0423060:CDS
TACAATTATCATTTCAAATG+TGG 0.515816 3_2:-72731184 None:intergenic
TTGTTTGATGGCATTGCCAA+TGG 0.517521 3_2:+72729581 Msa0423060:CDS
TCTCCACCTTTGTCTAGAAG+TGG 0.518403 3_2:-72734012 None:intergenic
AGTATGCATAACAGCATAAG+TGG 0.520175 3_2:-72733890 None:intergenic
TTAATTTCCTATTACAAGCA+AGG 0.520598 3_2:+72732576 Msa0423060:CDS
TTAGAGGAGTGAACTTAGGA+GGG 0.520834 3_2:+72729525 Msa0423060:CDS
GCAATGCCATCAAACAAAGA+AGG 0.527389 3_2:-72729575 None:intergenic
AATAAATACTGTGAGGATAC+CGG 0.529307 3_2:+72731874 Msa0423060:CDS
AAGAACCGAACCTTGTGGAG+TGG 0.530169 3_2:-72729174 None:intergenic
TCTTCAATGGTGGTTGGTGG+TGG 0.533184 3_2:-72728948 None:intergenic
TTTCTTACATGTGACGGTGG+AGG 0.533853 3_2:+72730764 Msa0423060:CDS
GCAGACTATCCAGGCGTACC+AGG 0.536546 3_2:+72731144 Msa0423060:CDS
AGAACCGAACCTTGTGGAGT+GGG 0.541639 3_2:-72729173 None:intergenic
CAAAAGGGAAACTTTGCTTG+TGG 0.541887 3_2:-72729121 None:intergenic
AAAGTCTTGATAATCTGTTA+GGG 0.544709 3_2:-72733466 None:intergenic
TTCAAATTTCTATATGAACA+TGG 0.547778 3_2:+72731851 Msa0423060:CDS
CCTCCAAGTCCATTTATTGG+AGG 0.547901 3_2:+72731926 Msa0423060:CDS
ACTCACAAGCATGTCTCCAT+TGG 0.548184 3_2:-72729597 None:intergenic
GAGCATAGTGCAAGCAGAGA+TGG 0.549175 3_2:+72732150 Msa0423060:CDS
AGATCTTCAATGGTGGTTGG+TGG 0.553617 3_2:-72728951 None:intergenic
CTAACTGGTAATCTCCATGT+AGG 0.553851 3_2:-72731215 None:intergenic
ATCTCAAATATCAGGAGAGT+GGG 0.554315 3_2:+72733416 Msa0423060:intron
GGCCCATTTCTTACATGTGA+CGG 0.554380 3_2:+72730758 Msa0423060:CDS
GAGCGCCGAAGATGTTCTTA+GGG 0.556572 3_2:+72731257 Msa0423060:CDS
TAAGTTGGTAGATCCTATGT+TGG 0.561236 3_2:-72732688 None:intergenic
TAACAAAGAATGTGTCAAAG+AGG 0.561592 3_2:-72732734 None:intergenic
AAGAAGAGACGGAAGTAGGA+AGG 0.562751 3_2:-72728997 None:intergenic
AAATATGTATCTGCAGACAA+TGG 0.568845 3_2:+72730350 Msa0423060:CDS
AAAGAATGGACCCTATCTGC+AGG 0.569019 3_2:+72730877 Msa0423060:CDS
GTGGGAAGAGTATAAAGGGA+AGG 0.573192 3_2:-72729155 None:intergenic
TGGGAAGAGTATAAAGGGAA+GGG 0.574583 3_2:-72729154 None:intergenic
ATACTGTGAGGATACCGGTT+GGG 0.576799 3_2:+72731879 Msa0423060:CDS
TACATATTCAAAAGTCGGGA+AGG 0.586562 3_2:+72732783 Msa0423060:CDS
TTGGCTTGATAAAGCTCCAA+AGG 0.586731 3_2:-72732669 None:intergenic
AATCTCAAATATCAGGAGAG+TGG 0.589980 3_2:+72733415 Msa0423060:intron
CTATCCAGGCGTACCAGGGT+GGG 0.591770 3_2:+72731149 Msa0423060:CDS
TGTTGTCCACTTCTAGACAA+AGG 0.598520 3_2:+72734006 Msa0423060:three_prime_UTR
CAAAAGCTCAATTCCCAGCA+AGG 0.598883 3_2:-72732517 None:intergenic
ATTGTATCTAATAACCTACA+TGG 0.601786 3_2:+72731201 Msa0423060:CDS
GGGAACCGGGAGCAGCATGA+AGG 0.601896 3_2:-72732116 None:intergenic
AAGGGAAAAGTGTCTCAAAA+GGG 0.604953 3_2:-72729136 None:intergenic
TCCCGGTTCCCAAAATGGAA+TGG 0.613131 3_2:+72732128 Msa0423060:CDS
TATACTCTTCCCACTCCACA+AGG 0.613534 3_2:+72729164 Msa0423060:five_prime_UTR
AAATAGCTATATTACAGTAG+AGG 0.615992 3_2:+72731826 Msa0423060:CDS
CTTATCTAGATCTTCAATGG+TGG 0.624313 3_2:-72728958 None:intergenic
GAGGAGTGAACTTAGGAGGG+TGG 0.625009 3_2:+72729528 Msa0423060:CDS
GAAATGGGCCTTGATTGGTA+CGG 0.632108 3_2:-72730745 None:intergenic
CTGTGAGGATACCGGTTGGG+TGG 0.633143 3_2:+72731882 Msa0423060:CDS
GAATGTTTCCCATGAAGATG+GGG 0.636416 3_2:-72730405 None:intergenic
AGGAGAGTGGGTGAATGAGT+GGG 0.637824 3_2:+72733428 Msa0423060:intron
AGACGGAAGTAGGAAGGACA+AGG 0.649812 3_2:-72728991 None:intergenic
GAAGTGGAGGGGTTACATGG+TGG 0.650799 3_2:+72729494 Msa0423060:intron
AATACTGTGAGGATACCGGT+TGG 0.651527 3_2:+72731878 Msa0423060:CDS
ACTATCCAGGCGTACCAGGG+TGG 0.651751 3_2:+72731148 Msa0423060:CDS
AGATTATCAAGACTTTGGAA+AGG 0.657543 3_2:+72733473 Msa0423060:CDS
AAAGTAAACAAGACAAAACC+AGG 0.661016 3_2:-72733747 None:intergenic
CAGACTATCCAGGCGTACCA+GGG 0.663790 3_2:+72731145 Msa0423060:CDS
AATGAATGTGACAGTTGACA+GGG 0.671114 3_2:+72730379 Msa0423060:CDS
AGTCCAATAACACCAACCAA+AGG 0.673079 3_2:-72733523 None:intergenic
TATGTATCTGCAGACAATGG+GGG 0.679750 3_2:+72730353 Msa0423060:CDS
ATATGTATCTGCAGACAATG+GGG 0.684552 3_2:+72730352 Msa0423060:CDS
TGTCCACTTCTAGACAAAGG+TGG 0.692797 3_2:+72734009 Msa0423060:three_prime_UTR
AACATGGAATAAATACTGTG+AGG 0.697922 3_2:+72731867 Msa0423060:CDS
GCTGAATTATCATCCCACCC+TGG 0.707594 3_2:-72731162 None:intergenic
CCATTTCTTACATGTGACGG+TGG 0.710780 3_2:+72730761 Msa0423060:CDS
AATGAGTGGGATGTGACAAG+CGG 0.726351 3_2:+72733441 Msa0423060:CDS
CGGAAGTAGGAAGGACAAGG+TGG 0.734111 3_2:-72728988 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTGAATTTTTAATTTCT+AGG + chr3_2:72732223-72732242 Msa0423060:CDS 10.0%
!! ATTTGAGTAAATATTAAATG+TGG + chr3_2:72729664-72729683 Msa0423060:intron 15.0%
!! ATAAATCAATACAAATAAGT+TGG - chr3_2:72731700-72731719 None:intergenic 15.0%
!!! TTGTTTTTCAATATTATGTA+TGG - chr3_2:72731748-72731767 None:intergenic 15.0%
!! AATTTCCAATATAAAGTTAA+TGG - chr3_2:72733843-72733862 None:intergenic 15.0%
!! TAACTTTCATTATCATTAGT+TGG - chr3_2:72729037-72729056 None:intergenic 20.0%
!! AAATGAAACAAATGAGATAT+TGG - chr3_2:72729446-72729465 None:intergenic 20.0%
!! ATGATATATGTACAAAATGT+AGG + chr3_2:72730289-72730308 Msa0423060:intron 20.0%
!!! GATTTGATTTTTTCAGATTA+AGG + chr3_2:72730494-72730513 Msa0423060:intron 20.0%
!!! AAACAGCATTACATTTTTTA+TGG - chr3_2:72730946-72730965 None:intergenic 20.0%
!!! TTAAAAGTCTAAGATCAATA+TGG - chr3_2:72731063-72731082 None:intergenic 20.0%
!! TACAATTATCATTTCAAATG+TGG - chr3_2:72731187-72731206 None:intergenic 20.0%
!! TTCAAATTTCTATATGAACA+TGG + chr3_2:72731851-72731870 Msa0423060:CDS 20.0%
!!! TTTAATTTCTAGGTATGTTT+TGG + chr3_2:72732233-72732252 Msa0423060:intron 20.0%
!! TTTGTAGAAGTTCTTATTAT+TGG + chr3_2:72732270-72732289 Msa0423060:intron 20.0%
!! TTGTAGAAGTTCTTATTATT+GGG + chr3_2:72732271-72732290 Msa0423060:intron 20.0%
!! TACAATACATATTCAAAAGT+CGG + chr3_2:72732778-72732797 Msa0423060:CDS 20.0%
!! ATTTGATACATGATTGAAAA+CGG + chr3_2:72733371-72733390 Msa0423060:intron 20.0%
!! AATCAGAATATATACACTTT+GGG + chr3_2:72733704-72733723 Msa0423060:CDS 20.0%
!! TCAGATAAAACTTATAAGTT+GGG + chr3_2:72733916-72733935 Msa0423060:three_prime_UTR 20.0%
! TATCTTATCTAGATCTTCAA+TGG - chr3_2:72728964-72728983 None:intergenic 25.0%
!! TTACATTCTTTTTCCTATGA+TGG + chr3_2:72729252-72729271 Msa0423060:intron 25.0%
! TGACTAACAAAAAACACATT+CGG - chr3_2:72729753-72729772 None:intergenic 25.0%
!!! GTGTTTTTTGTTAGTCAATT+TGG + chr3_2:72729756-72729775 Msa0423060:intron 25.0%
!!! TACATGTTTTCTGGTTAATT+TGG + chr3_2:72729785-72729804 Msa0423060:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr3_2:72729860-72729879 Msa0423060:intron 25.0%
!! TTTTCAAATGGTTTCTCTAA+TGG - chr3_2:72729995-72730014 None:intergenic 25.0%
! AACCATTTGAAAAGATTTAG+AGG + chr3_2:72730002-72730021 Msa0423060:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG - chr3_2:72730042-72730061 None:intergenic 25.0%
! TACTAACAGAAGATACATTT+AGG + chr3_2:72730171-72730190 Msa0423060:intron 25.0%
! ACTAACAGAAGATACATTTA+GGG + chr3_2:72730172-72730191 Msa0423060:intron 25.0%
! TATATGTACAAAATGTAGGA+TGG + chr3_2:72730293-72730312 Msa0423060:intron 25.0%
! ATATGTACAAAATGTAGGAT+GGG + chr3_2:72730294-72730313 Msa0423060:intron 25.0%
!! TTCAGAAATTCAACTGATTT+AGG - chr3_2:72730581-72730600 None:intergenic 25.0%
! TAAGCGTAATGAGAAAAATA+AGG + chr3_2:72730841-72730860 Msa0423060:CDS 25.0%
!! TATATGAAGTTGCTTTACTA+TGG + chr3_2:72731033-72731052 Msa0423060:intron 25.0%
! ATTGTATCTAATAACCTACA+TGG + chr3_2:72731201-72731220 Msa0423060:CDS 25.0%
! ATGACTATCACATTGAAAAT+CGG + chr3_2:72731368-72731387 Msa0423060:intron 25.0%
! CTTATAACTTACTGAAAAGA+CGG - chr3_2:72731430-72731449 None:intergenic 25.0%
! AATAAGATGAAAACAACTTG+TGG + chr3_2:72731552-72731571 Msa0423060:intron 25.0%
!! AATCAATACAAATAAGTTGG+AGG - chr3_2:72731697-72731716 None:intergenic 25.0%
! AAATAGCTATATTACAGTAG+AGG + chr3_2:72731826-72731845 Msa0423060:CDS 25.0%
!! TCTAGATAATGCATTTTCAT+GGG + chr3_2:72731961-72731980 Msa0423060:CDS 25.0%
!!! AAACTTCTTTTTTCCTTTTG+AGG + chr3_2:72732041-72732060 Msa0423060:intron 25.0%
!!! AATGACTTTGAAATGTAATC+TGG - chr3_2:72732198-72732217 None:intergenic 25.0%
! ATTGATATTCTTGAGTACAT+GGG - chr3_2:72732306-72732325 None:intergenic 25.0%
! AATTGATATTCTTGAGTACA+TGG - chr3_2:72732307-72732326 None:intergenic 25.0%
! TACTCAAGAATATCAATTAG+AGG + chr3_2:72732309-72732328 Msa0423060:intron 25.0%
! ACTCAAGAATATCAATTAGA+GGG + chr3_2:72732310-72732329 Msa0423060:intron 25.0%
! TTAATTTCCTATTACAAGCA+AGG + chr3_2:72732576-72732595 Msa0423060:CDS 25.0%
! ACAATACATATTCAAAAGTC+GGG + chr3_2:72732779-72732798 Msa0423060:CDS 25.0%
! TCTTACCAATAAAAATTAGC+GGG - chr3_2:72732839-72732858 None:intergenic 25.0%
! GTCTTACCAATAAAAATTAG+CGG - chr3_2:72732840-72732859 None:intergenic 25.0%
! TTCAGATAATTATGCATTCA+AGG - chr3_2:72732938-72732957 None:intergenic 25.0%
!! ATCAGACCATTTTCAATTTA+TGG - chr3_2:72733011-72733030 None:intergenic 25.0%
!! AAAGTCTTGATAATCTGTTA+GGG - chr3_2:72733469-72733488 None:intergenic 25.0%
!! ATTGGACTTTAAAAAATGAC+AGG + chr3_2:72733538-72733557 Msa0423060:CDS 25.0%
!! TTGGACTTTAAAAAATGACA+GGG + chr3_2:72733539-72733558 Msa0423060:CDS 25.0%
!!! AATTACATGTTTGATTTTGC+AGG + chr3_2:72733668-72733687 Msa0423060:intron 25.0%
!!! ATTACATGTTTGATTTTGCA+GGG + chr3_2:72733669-72733688 Msa0423060:intron 25.0%
! GTGTATATATTCTGATTGTT+GGG - chr3_2:72733701-72733720 None:intergenic 25.0%
! AGTGTATATATTCTGATTGT+TGG - chr3_2:72733702-72733721 None:intergenic 25.0%
! CAATCAGAATATATACACTT+TGG + chr3_2:72733703-72733722 Msa0423060:CDS 25.0%
!! ACAACTTTTACTTAGATTGA+AGG + chr3_2:72733775-72733794 Msa0423060:exon 25.0%
! ATTGAAGAATGCAATGATAT+AGG + chr3_2:72733860-72733879 Msa0423060:three_prime_UTR 25.0%
! CTCAGATAAAACTTATAAGT+TGG + chr3_2:72733915-72733934 Msa0423060:three_prime_UTR 25.0%
TTATCATTAGTTGGACTTGA+AGG - chr3_2:72729028-72729047 None:intergenic 30.0%
CATCCTCATTTCATTGAATA+CGG + chr3_2:72729220-72729239 Msa0423060:intron 30.0%
AAACCGTATTCAATGAAATG+AGG - chr3_2:72729226-72729245 None:intergenic 30.0%
TAAAAAAATGCATGCCCATT+TGG - chr3_2:72729331-72729350 None:intergenic 30.0%
!!! TCTTGTTTTTTCATCACTTC+TGG + chr3_2:72729354-72729373 Msa0423060:CDS 30.0%
! TTGTTCTTGTTTCTTTGAAG+TGG + chr3_2:72729478-72729497 Msa0423060:intron 30.0%
! ATCAAACCTTCTTTGTTTGA+TGG + chr3_2:72729569-72729588 Msa0423060:CDS 30.0%
AGTATCTTGCTGAAAATTGA+GGG - chr3_2:72729639-72729658 None:intergenic 30.0%
AAGTATCTTGCTGAAAATTG+AGG - chr3_2:72729640-72729659 None:intergenic 30.0%
GACTAACAAAAAACACATTC+GGG - chr3_2:72729752-72729771 None:intergenic 30.0%
TTAACCAGAAAACATGTAAG+AGG - chr3_2:72729783-72729802 None:intergenic 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr3_2:72729856-72729875 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG - chr3_2:72729926-72729945 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + chr3_2:72729927-72729946 Msa0423060:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG - chr3_2:72729985-72730004 None:intergenic 30.0%
! GACCTCTAAATCTTTTCAAA+TGG - chr3_2:72730007-72730026 None:intergenic 30.0%
! TGGTTTTTGATAGAACACTA+TGG + chr3_2:72730046-72730065 Msa0423060:intron 30.0%
AAATATGTATCTGCAGACAA+TGG + chr3_2:72730350-72730369 Msa0423060:CDS 30.0%
AATATGTATCTGCAGACAAT+GGG + chr3_2:72730351-72730370 Msa0423060:CDS 30.0%
TGCTTACTTTATCCATTTCA+CGG + chr3_2:72730548-72730567 Msa0423060:intron 30.0%
GTTCACATCAAGATAAAGAA+TGG + chr3_2:72730863-72730882 Msa0423060:CDS 30.0%
GATTTATAGAGAGACTAACA+TGG - chr3_2:72730981-72731000 None:intergenic 30.0%
GCTTATACCACTATCTTTAT+AGG + chr3_2:72731098-72731117 Msa0423060:intron 30.0%
GTTATCTACTGTCACAATTA+AGG + chr3_2:72731314-72731333 Msa0423060:intron 30.0%
ATCACATTGAAAATCGGTAA+AGG + chr3_2:72731374-72731393 Msa0423060:intron 30.0%
! GGTTTATTTGAGTTTACCTA+CGG - chr3_2:72731634-72731653 None:intergenic 30.0%
GAAGTAAACAGACAAATTTG+TGG - chr3_2:72731675-72731694 None:intergenic 30.0%
AACATGGAATAAATACTGTG+AGG + chr3_2:72731867-72731886 Msa0423060:CDS 30.0%
AATAAATACTGTGAGGATAC+CGG + chr3_2:72731874-72731893 Msa0423060:CDS 30.0%
! CTCTAGATAATGCATTTTCA+TGG + chr3_2:72731960-72731979 Msa0423060:CDS 30.0%
TTTCTCTGTATTTATCATCC+AGG + chr3_2:72731999-72732018 Msa0423060:intron 30.0%
TTCTCTGTATTTATCATCCA+GGG + chr3_2:72732000-72732019 Msa0423060:intron 30.0%
TTATCATCCAGGGTTTATTA+CGG + chr3_2:72732010-72732029 Msa0423060:intron 30.0%
AATTAAGCACATTCCTCAAA+AGG - chr3_2:72732057-72732076 None:intergenic 30.0%
ATCACAAAGTCTATTCTGTA+AGG - chr3_2:72732474-72732493 None:intergenic 30.0%
ATGCAAATCCAAAACTAAGT+TGG - chr3_2:72732706-72732725 None:intergenic 30.0%
TAACAAAGAATGTGTCAAAG+AGG - chr3_2:72732737-72732756 None:intergenic 30.0%
TTCTTTGTTAATATGAGTGC+TGG + chr3_2:72732747-72732766 Msa0423060:CDS 30.0%
TAGTGTCAAACAAAACTGAA+AGG - chr3_2:72732869-72732888 None:intergenic 30.0%
!! GATTTTCATGAAGTTGATTG+AGG - chr3_2:72732916-72732935 None:intergenic 30.0%
! TGTTTTTCTTCTCCTTAAAG+TGG + chr3_2:72732985-72733004 Msa0423060:intron 30.0%
! TTCAATTTATGGCCACTTTA+AGG - chr3_2:72733000-72733019 None:intergenic 30.0%
AAGTGGCCATAAATTGAAAA+TGG + chr3_2:72733002-72733021 Msa0423060:intron 30.0%
ACACAACAATCTGTAACTAT+TGG - chr3_2:72733114-72733133 None:intergenic 30.0%
!! GAATGTGCTTTTTATTTGAG+AGG + chr3_2:72733179-72733198 Msa0423060:intron 30.0%
CAAAGTGACAAAAAAACAGT+TGG - chr3_2:72733228-72733247 None:intergenic 30.0%
! CAAAGTCTTGATAATCTGTT+AGG - chr3_2:72733470-72733489 None:intergenic 30.0%
CTAACAGATTATCAAGACTT+TGG + chr3_2:72733468-72733487 Msa0423060:CDS 30.0%
! AGATTATCAAGACTTTGGAA+AGG + chr3_2:72733473-72733492 Msa0423060:CDS 30.0%
AGGAACAACTATCTTCAATT+AGG + chr3_2:72733588-72733607 Msa0423060:CDS 30.0%
CAACTATCTTCAATTAGGTA+AGG + chr3_2:72733593-72733612 Msa0423060:intron 30.0%
TTAGGTAAGGACTATAGATT+TGG + chr3_2:72733606-72733625 Msa0423060:intron 30.0%
AAAGTAAACAAGACAAAACC+AGG - chr3_2:72733750-72733769 None:intergenic 30.0%
CTCTGCCATTAACTTTATAT+TGG + chr3_2:72733835-72733854 Msa0423060:three_prime_UTR 30.0%
!! ATAAGTTGGGTTGATATTCA+AGG + chr3_2:72733929-72733948 Msa0423060:three_prime_UTR 30.0%
! CACAAAATTAGTGGTTTTTC+TGG - chr3_2:72733988-72734007 None:intergenic 30.0%
CTTATCTAGATCTTCAATGG+TGG - chr3_2:72728961-72728980 None:intergenic 35.0%
TGAAGGAGAAAAAGAAGAGA+CGG - chr3_2:72729011-72729030 None:intergenic 35.0%
AAAAGGGAAACTTTGCTTGT+GGG - chr3_2:72729123-72729142 None:intergenic 35.0%
!! AAGGGAAAAGTGTCTCAAAA+GGG - chr3_2:72729139-72729158 None:intergenic 35.0%
TAAAAAAGAACCGAACCTTG+TGG - chr3_2:72729182-72729201 None:intergenic 35.0%
GAAAATGCAGAATCCATCAT+AGG - chr3_2:72729268-72729287 None:intergenic 35.0%
! ATTCTGCATTTTCGCTTTCT+TGG + chr3_2:72729275-72729294 Msa0423060:intron 35.0%
!!! TGGGACTTGTTTTTACCAAA+TGG + chr3_2:72729313-72729332 Msa0423060:CDS 35.0%
!!! GGGACTTGTTTTTACCAAAT+GGG + chr3_2:72729314-72729333 Msa0423060:CDS 35.0%
!! ATCACTTCTGGAGTATATTC+AGG + chr3_2:72729366-72729385 Msa0423060:CDS 35.0%
!! TTCTGGAGTATATTCAGGTA+AGG + chr3_2:72729371-72729390 Msa0423060:intron 35.0%
!! TTCTTGTTTCTTTGAAGTGG+AGG + chr3_2:72729481-72729500 Msa0423060:intron 35.0%
!! TCTTGTTTCTTTGAAGTGGA+GGG + chr3_2:72729482-72729501 Msa0423060:intron 35.0%
!! CATGGTGGATTTAAAGTTAG+AGG + chr3_2:72729509-72729528 Msa0423060:CDS 35.0%
AAAGTTAGAGGAGTGAACTT+AGG + chr3_2:72729521-72729540 Msa0423060:CDS 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr3_2:72729849-72729868 Msa0423060:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr3_2:72729869-72729888 Msa0423060:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr3_2:72729874-72729893 Msa0423060:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG + chr3_2:72729930-72729949 Msa0423060:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG + chr3_2:72730014-72730033 Msa0423060:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr3_2:72730026-72730045 Msa0423060:intron 35.0%
TTCGTGCACAAATTGACTAA+GGG - chr3_2:72730149-72730168 None:intergenic 35.0%
TTTCGTGCACAAATTGACTA+AGG - chr3_2:72730150-72730169 None:intergenic 35.0%
! TGGGACTAAATTGACTTATC+TGG + chr3_2:72730251-72730270 Msa0423060:intron 35.0%
ATATGTATCTGCAGACAATG+GGG + chr3_2:72730352-72730371 Msa0423060:CDS 35.0%
AATGAATGTGACAGTTGACA+GGG + chr3_2:72730379-72730398 Msa0423060:CDS 35.0%
TGAATGTTTCCCATGAAGAT+GGG - chr3_2:72730409-72730428 None:intergenic 35.0%
ATCTTCATGGGAAACATTCA+GGG + chr3_2:72730409-72730428 Msa0423060:CDS 35.0%
ATCGTAGCAACATATAATGC+TGG - chr3_2:72730477-72730496 None:intergenic 35.0%
GATAAAGTAAGCACAGGAAA+TGG - chr3_2:72730541-72730560 None:intergenic 35.0%
GAAATGGATAAAGTAAGCAC+AGG - chr3_2:72730547-72730566 None:intergenic 35.0%
TTAGGTATGAAACCGTGAAA+TGG - chr3_2:72730563-72730582 None:intergenic 35.0%
TTTCAATTCCGTACCAATCA+AGG + chr3_2:72730737-72730756 Msa0423060:CDS 35.0%
AGGATAAATACCTGCAGATA+GGG - chr3_2:72730890-72730909 None:intergenic 35.0%
AAGGATAAATACCTGCAGAT+AGG - chr3_2:72730891-72730910 None:intergenic 35.0%
CCAATTTAGCAGAAAGCAAA+AGG - chr3_2:72730910-72730929 None:intergenic 35.0%
! CCTTTTGCTTTCTGCTAAAT+TGG + chr3_2:72730907-72730926 Msa0423060:intron 35.0%
TTATAGAGAGACTAACATGG+TGG - chr3_2:72730978-72730997 None:intergenic 35.0%
GTTGTAGCCTATAAAGATAG+TGG - chr3_2:72731108-72731127 None:intergenic 35.0%
CTATCTTTATAGGCTACAAC+TGG + chr3_2:72731108-72731127 Msa0423060:intron 35.0%
TACCAGTTAGCAAATGGTTA+TGG + chr3_2:72731228-72731247 Msa0423060:CDS 35.0%
GTTTACCCTAAGAACATCTT+CGG - chr3_2:72731265-72731284 None:intergenic 35.0%
! TGTCACAATTAAGGCTTGTT+AGG + chr3_2:72731323-72731342 Msa0423060:intron 35.0%
CTTACTTTCAAAAACTCTCC+AGG - chr3_2:72731469-72731488 None:intergenic 35.0%
!! GCTGTTTTCATAAGCTATAC+TGG + chr3_2:72731517-72731536 Msa0423060:intron 35.0%
AAGCTATACTGGAGAGTTTA+TGG + chr3_2:72731528-72731547 Msa0423060:intron 35.0%
AGACTATTTGGGAAAGCTTA+TGG - chr3_2:72731596-72731615 None:intergenic 35.0%
AAGCACTTGTGAGACTATTT+GGG - chr3_2:72731607-72731626 None:intergenic 35.0%
TAAGCACTTGTGAGACTATT+TGG - chr3_2:72731608-72731627 None:intergenic 35.0%
GACAAATTTGTGGAGACTTA+GGG - chr3_2:72731665-72731684 None:intergenic 35.0%
AGACAAATTTGTGGAGACTT+AGG - chr3_2:72731666-72731685 None:intergenic 35.0%
AGAAAGCGGAACAATTAACT+AGG - chr3_2:72731788-72731807 None:intergenic 35.0%
TCAAGACTTCCTCCAATAAA+TGG - chr3_2:72731938-72731957 None:intergenic 35.0%
! ACTATGCTCCATTCCATTTT+GGG - chr3_2:72732139-72732158 None:intergenic 35.0%
GAAATGTAATCTGGAGAAGT+TGG - chr3_2:72732189-72732208 None:intergenic 35.0%
! CTTTTGAATGAACCATCATC+TGG + chr3_2:72732534-72732553 Msa0423060:CDS 35.0%
ACGAATATTTCCGAACGATT+TGG - chr3_2:72732605-72732624 None:intergenic 35.0%
!! TAAGTTGGTAGATCCTATGT+TGG - chr3_2:72732691-72732710 None:intergenic 35.0%
! AGGATCTACCAACTTAGTTT+TGG + chr3_2:72732695-72732714 Msa0423060:CDS 35.0%
TACATATTCAAAAGTCGGGA+AGG + chr3_2:72732783-72732802 Msa0423060:CDS 35.0%
! AATGGCCCGCTAATTTTTAT+TGG + chr3_2:72732831-72732850 Msa0423060:CDS 35.0%
AAATGGTCTGATTTCAGACA+TGG + chr3_2:72733019-72733038 Msa0423060:intron 35.0%
AACAGTATCTAATGACACAC+AGG + chr3_2:72733048-72733067 Msa0423060:intron 35.0%
GTCTATAATGCAGTTTCCTT+TGG + chr3_2:72733507-72733526 Msa0423060:CDS 35.0%
ATAATGCAGTTTCCTTTGGT+TGG + chr3_2:72733511-72733530 Msa0423060:CDS 35.0%
!! TTTCCTTTGGTTGGTGTTAT+TGG + chr3_2:72733520-72733539 Msa0423060:CDS 35.0%
! GGGATTTTGAATGGAACATT+AGG + chr3_2:72733568-72733587 Msa0423060:CDS 35.0%
!! ATATACACTTTGGGACTCTT+TGG + chr3_2:72733713-72733732 Msa0423060:CDS 35.0%
AGTATGCATAACAGCATAAG+TGG - chr3_2:72733893-72733912 None:intergenic 35.0%
AGTGGACAACACAAAATTAG+TGG - chr3_2:72733997-72734016 None:intergenic 35.0%
TCTAGATCTTCAATGGTGGT+TGG - chr3_2:72728957-72728976 None:intergenic 40.0%
GAAAAAGAAGAGACGGAAGT+AGG - chr3_2:72729004-72729023 None:intergenic 40.0%
CAAAAGGGAAACTTTGCTTG+TGG - chr3_2:72729124-72729143 None:intergenic 40.0%
!! GAAGGGAAAAGTGTCTCAAA+AGG - chr3_2:72729140-72729159 None:intergenic 40.0%
! TGGGAAGAGTATAAAGGGAA+GGG - chr3_2:72729157-72729176 None:intergenic 40.0%
! TGGAGTGGGAAGAGTATAAA+GGG - chr3_2:72729162-72729181 None:intergenic 40.0%
!! TTGGTGCTAGCATACTTGAT+GGG + chr3_2:72729294-72729313 Msa0423060:intron 40.0%
!! CTTGTTTCTTTGAAGTGGAG+GGG + chr3_2:72729483-72729502 Msa0423060:intron 40.0%
TTAGAGGAGTGAACTTAGGA+GGG + chr3_2:72729525-72729544 Msa0423060:CDS 40.0%
GCAATGCCATCAAACAAAGA+AGG - chr3_2:72729578-72729597 None:intergenic 40.0%
! TTGTTTGATGGCATTGCCAA+TGG + chr3_2:72729581-72729600 Msa0423060:CDS 40.0%
! TGGTCCTCTTACATGTTTTC+TGG + chr3_2:72729776-72729795 Msa0423060:intron 40.0%
TTCCCTTAGAAAAGAGTGAG+TGG + chr3_2:72729822-72729841 Msa0423060:intron 40.0%
TCCCTTAGAAAAGAGTGAGT+GGG + chr3_2:72729823-72729842 Msa0423060:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG - chr3_2:72729917-72729936 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr3_2:72729955-72729974 Msa0423060:intron 40.0%
!! GGTGGTGTCATTATAATCTC+TGG - chr3_2:72730221-72730240 None:intergenic 40.0%
TATGTATCTGCAGACAATGG+GGG + chr3_2:72730353-72730372 Msa0423060:CDS 40.0%
GAATGAATGTGACAGTTGAC+AGG + chr3_2:72730378-72730397 Msa0423060:CDS 40.0%
GAATGTTTCCCATGAAGATG+GGG - chr3_2:72730408-72730427 None:intergenic 40.0%
CTGAATGTTTCCCATGAAGA+TGG - chr3_2:72730410-72730429 None:intergenic 40.0%
CATCTTCATGGGAAACATTC+AGG + chr3_2:72730408-72730427 Msa0423060:CDS 40.0%
TGTAAGAAATGGGCCTTGAT+TGG - chr3_2:72730753-72730772 None:intergenic 40.0%
CACCGTCACATGTAAGAAAT+GGG - chr3_2:72730763-72730782 None:intergenic 40.0%
TCAAATGTCTCAGACGTTGA+AGG - chr3_2:72730818-72730837 None:intergenic 40.0%
CTAACTGGTAATCTCCATGT+AGG - chr3_2:72731218-72731237 None:intergenic 40.0%
GGAGATTACCAGTTAGCAAA+TGG + chr3_2:72731222-72731241 Msa0423060:CDS 40.0%
! GTCCATAACCATTTGCTAAC+TGG - chr3_2:72731233-72731252 None:intergenic 40.0%
!! AGCTGTTTTCAAAGCAATCC+TGG + chr3_2:72731448-72731467 Msa0423060:intron 40.0%
! ATAAATGGACTTGGAGGATC+AGG - chr3_2:72731923-72731942 None:intergenic 40.0%
GATCCTCCAAGTCCATTTAT+TGG + chr3_2:72731923-72731942 Msa0423060:CDS 40.0%
! CTTCCTCCAATAAATGGACT+TGG - chr3_2:72731932-72731951 None:intergenic 40.0%
! CACTATGCTCCATTCCATTT+TGG - chr3_2:72732140-72732159 None:intergenic 40.0%
CTATTCTGTAAGGTCGACAA+AGG - chr3_2:72732464-72732483 None:intergenic 40.0%
AAAGAAACTGTGCCAGATGA+TGG - chr3_2:72732549-72732568 None:intergenic 40.0%
! TTGGTAGCCTTGCTTGTAAT+AGG - chr3_2:72732586-72732605 None:intergenic 40.0%
! GTGATAATGTGCCAGAGAAT+TGG + chr3_2:72732636-72732655 Msa0423060:CDS 40.0%
AATTGGCAATGCAGATCCTT+TGG + chr3_2:72732653-72732672 Msa0423060:CDS 40.0%
! TTGGCTTGATAAAGCTCCAA+AGG - chr3_2:72732672-72732691 None:intergenic 40.0%
! GAGCTTTATCAAGCCAACAT+AGG + chr3_2:72732675-72732694 Msa0423060:CDS 40.0%
CAGGCCTTCAACAATTCAAA+TGG + chr3_2:72732813-72732832 Msa0423060:CDS 40.0%
! AGTCATTTCAAGTCGTGTCT+CGG + chr3_2:72733071-72733090 Msa0423060:intron 40.0%
AGTCCAATAACACCAACCAA+AGG - chr3_2:72733526-72733545 None:intergenic 40.0%
! TAAAAAATGACAGGGAGCAC+TGG + chr3_2:72733547-72733566 Msa0423060:CDS 40.0%
!! AAAAAATGACAGGGAGCACT+GGG + chr3_2:72733548-72733567 Msa0423060:CDS 40.0%
GGTAAGGACTATAGATTTGG+TGG + chr3_2:72733609-72733628 Msa0423060:intron 40.0%
TGTTGTCCACTTCTAGACAA+AGG + chr3_2:72734006-72734025 Msa0423060:three_prime_UTR 40.0%
AGATCTTCAATGGTGGTTGG+TGG - chr3_2:72728954-72728973 None:intergenic 45.0%
AAGAAGAGACGGAAGTAGGA+AGG - chr3_2:72729000-72729019 None:intergenic 45.0%
! GTGGGAAGAGTATAAAGGGA+AGG - chr3_2:72729158-72729177 None:intergenic 45.0%
! GTGGAGTGGGAAGAGTATAA+AGG - chr3_2:72729163-72729182 None:intergenic 45.0%
TATACTCTTCCCACTCCACA+AGG + chr3_2:72729164-72729183 Msa0423060:five_prime_UTR 45.0%
!! CTTGGTGCTAGCATACTTGA+TGG + chr3_2:72729293-72729312 Msa0423060:intron 45.0%
! TTTGAAGTGGAGGGGTTACA+TGG + chr3_2:72729491-72729510 Msa0423060:intron 45.0%
GTTAGAGGAGTGAACTTAGG+AGG + chr3_2:72729524-72729543 Msa0423060:CDS 45.0%
!! GGTGGCTTGTTATTGAAGGT+TGG + chr3_2:72729546-72729565 Msa0423060:CDS 45.0%
ACTCACAAGCATGTCTCCAT+TGG - chr3_2:72729600-72729619 None:intergenic 45.0%
TCTAAGGGAAGACACACATG+AGG - chr3_2:72729812-72729831 None:intergenic 45.0%
! CCCCACTCACTCTTTTCTAA+GGG - chr3_2:72729827-72729846 None:intergenic 45.0%
CCCTTAGAAAAGAGTGAGTG+GGG + chr3_2:72729824-72729843 Msa0423060:intron 45.0%
CCTTAGAAAAGAGTGAGTGG+GGG + chr3_2:72729825-72729844 Msa0423060:intron 45.0%
CTTCTTACAACGGCATCTAC+GGG - chr3_2:72729916-72729935 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG + chr3_2:72729939-72729958 Msa0423060:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + chr3_2:72729949-72729968 Msa0423060:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr3_2:72730095-72730114 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr3_2:72730096-72730115 None:intergenic 45.0%
CCACAACTGCAACAGGAAAA+AGG - chr3_2:72730699-72730718 None:intergenic 45.0%
! CCTTTTTCCTGTTGCAGTTG+TGG + chr3_2:72730696-72730715 Msa0423060:intron 45.0%
ATACTCTCCACAACTGCAAC+AGG - chr3_2:72730706-72730725 None:intergenic 45.0%
GAAATGGGCCTTGATTGGTA+CGG - chr3_2:72730748-72730767 None:intergenic 45.0%
GGCCCATTTCTTACATGTGA+CGG + chr3_2:72730758-72730777 Msa0423060:CDS 45.0%
CCACCGTCACATGTAAGAAA+TGG - chr3_2:72730764-72730783 None:intergenic 45.0%
CCATTTCTTACATGTGACGG+TGG + chr3_2:72730761-72730780 Msa0423060:CDS 45.0%
TTTCTTACATGTGACGGTGG+AGG + chr3_2:72730764-72730783 Msa0423060:CDS 45.0%
AAAGAATGGACCCTATCTGC+AGG + chr3_2:72730877-72730896 Msa0423060:CDS 45.0%
TCACAAGTGCTTATGTCCGT+AGG + chr3_2:72731615-72731634 Msa0423060:intron 45.0%
ATTTGTGGAGACTTAGGGCT+TGG - chr3_2:72731660-72731679 None:intergenic 45.0%
GTCTCTGCAGTTACAGAAAG+CGG - chr3_2:72731802-72731821 None:intergenic 45.0%
AATACTGTGAGGATACCGGT+TGG + chr3_2:72731878-72731897 Msa0423060:CDS 45.0%
! ATACTGTGAGGATACCGGTT+GGG + chr3_2:72731879-72731898 Msa0423060:CDS 45.0%
! CCTCCAATAAATGGACTTGG+AGG - chr3_2:72731929-72731948 None:intergenic 45.0%
CCTCCAAGTCCATTTATTGG+AGG + chr3_2:72731926-72731945 Msa0423060:CDS 45.0%
! TGCATTTTCATGGGCACAGT+AGG + chr3_2:72731970-72731989 Msa0423060:intron 45.0%
AGTTGTGCCGTAATAAACCC+TGG - chr3_2:72732020-72732039 None:intergenic 45.0%
!! TCCATTCCATTTTGGGAACC+GGG - chr3_2:72732132-72732151 None:intergenic 45.0%
!! CTCCATTCCATTTTGGGAAC+CGG - chr3_2:72732133-72732152 None:intergenic 45.0%
!! GCAAGCAGAGATGGTTTTAC+AGG + chr3_2:72732159-72732178 Msa0423060:CDS 45.0%
CAAAAGCTCAATTCCCAGCA+AGG - chr3_2:72732520-72732539 None:intergenic 45.0%
AGCAAGGCTACCAAATCGTT+CGG + chr3_2:72732592-72732611 Msa0423060:CDS 45.0%
GATCTGCATTGCCAATTCTC+TGG - chr3_2:72732650-72732669 None:intergenic 45.0%
CGGGCCATTTGAATTGTTGA+AGG - chr3_2:72732820-72732839 None:intergenic 45.0%
AATGAGTGGGATGTGACAAG+CGG + chr3_2:72733441-72733460 Msa0423060:CDS 45.0%
!! CACTTTGGGACTCTTTGGAT+TGG + chr3_2:72733718-72733737 Msa0423060:CDS 45.0%
!! TCTTTGGATTGGCTTTCACC+TGG + chr3_2:72733729-72733748 Msa0423060:CDS 45.0%
TGTCCACTTCTAGACAAAGG+TGG + chr3_2:72734009-72734028 Msa0423060:three_prime_UTR 45.0%
TCTCCACCTTTGTCTAGAAG+TGG - chr3_2:72734015-72734034 None:intergenic 45.0%
!! ATGGTGGTTGGTGGTGGATA+AGG - chr3_2:72728945-72728964 None:intergenic 50.0%
!! TCTTCAATGGTGGTTGGTGG+TGG - chr3_2:72728951-72728970 None:intergenic 50.0%
AGACGGAAGTAGGAAGGACA+AGG - chr3_2:72728994-72729013 None:intergenic 50.0%
TCTTCCCACTCCACAAGGTT+CGG + chr3_2:72729169-72729188 Msa0423060:intron 50.0%
AGAACCGAACCTTGTGGAGT+GGG - chr3_2:72729176-72729195 None:intergenic 50.0%
AAGAACCGAACCTTGTGGAG+TGG - chr3_2:72729177-72729196 None:intergenic 50.0%
!! GGAGGGTGGCTTGTTATTGA+AGG + chr3_2:72729542-72729561 Msa0423060:CDS 50.0%
! CCCCCACTCACTCTTTTCTA+AGG - chr3_2:72729828-72729847 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr3_2:72730091-72730110 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr3_2:72730097-72730116 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr3_2:72730094-72730113 Msa0423060:intron 50.0%
ATTTAGTCCCACAACGAGCG+AGG - chr3_2:72730242-72730261 None:intergenic 50.0%
ACAGGGATTCCCCATCTTCA+TGG + chr3_2:72730396-72730415 Msa0423060:CDS 50.0%
CAGGGATTCCCCATCTTCAT+GGG + chr3_2:72730397-72730416 Msa0423060:CDS 50.0%
CAGCTTACAGCAGACTATCC+AGG + chr3_2:72731135-72731154 Msa0423060:CDS 50.0%
GCTGAATTATCATCCCACCC+TGG - chr3_2:72731165-72731184 None:intergenic 50.0%
!! AGAGCGCCGAAGATGTTCTT+AGG + chr3_2:72731256-72731275 Msa0423060:CDS 50.0%
!! GAGCGCCGAAGATGTTCTTA+GGG + chr3_2:72731257-72731276 Msa0423060:CDS 50.0%
TGGAGACTTAGGGCTTGGAT+TGG - chr3_2:72731655-72731674 None:intergenic 50.0%
AAAGCAATCCACCACCCAAC+CGG - chr3_2:72731896-72731915 None:intergenic 50.0%
ATTGACCTTCATGCTGCTCC+CGG + chr3_2:72732111-72732130 Msa0423060:CDS 50.0%
TCCCGGTTCCCAAAATGGAA+TGG + chr3_2:72732128-72732147 Msa0423060:CDS 50.0%
GAGCATAGTGCAAGCAGAGA+TGG + chr3_2:72732150-72732169 Msa0423060:CDS 50.0%
!! GCAGAGATGGTTTTACAGGC+TGG + chr3_2:72732163-72732182 Msa0423060:CDS 50.0%
AGGAGAGTGGGTGAATGAGT+GGG + chr3_2:72733428-72733447 Msa0423060:intron 50.0%
!!! GGGAGCACTGGGATTTTGAA+TGG + chr3_2:72733559-72733578 Msa0423060:CDS 50.0%
CGGAAGTAGGAAGGACAAGG+TGG - chr3_2:72728991-72729010 None:intergenic 55.0%
GAAGTGGAGGGGTTACATGG+TGG + chr3_2:72729494-72729513 Msa0423060:intron 55.0%
GAGGAGTGAACTTAGGAGGG+TGG + chr3_2:72729528-72729547 Msa0423060:CDS 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr3_2:72730083-72730102 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr3_2:72730082-72730101 Msa0423060:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr3_2:72730083-72730102 Msa0423060:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr3_2:72730089-72730108 Msa0423060:intron 55.0%
GTATCTGCAGACAATGGGGG+AGG + chr3_2:72730356-72730375 Msa0423060:CDS 55.0%
CAGACTATCCAGGCGTACCA+GGG + chr3_2:72731145-72731164 Msa0423060:CDS 55.0%
! TGCAAAGCATCCTGCCTTGC+TGG + chr3_2:72732503-72732522 Msa0423060:CDS 55.0%
! GCAAAGCATCCTGCCTTGCT+GGG + chr3_2:72732504-72732523 Msa0423060:CDS 55.0%
AGCTCAATTCCCAGCAAGGC+AGG - chr3_2:72732516-72732535 None:intergenic 55.0%
AAGTCGGGAAGGTCTGTTGC+AGG + chr3_2:72732794-72732813 Msa0423060:CDS 55.0%
CAGGAGAGTGGGTGAATGAG+TGG + chr3_2:72733427-72733446 Msa0423060:intron 55.0%
TGACACCACCTCGCTCGTTG+TGG + chr3_2:72730231-72730250 Msa0423060:intron 60.0%
GACACCACCTCGCTCGTTGT+GGG + chr3_2:72730232-72730251 Msa0423060:intron 60.0%
TAGTCCCACAACGAGCGAGG+TGG - chr3_2:72730239-72730258 None:intergenic 60.0%
GCAGACTATCCAGGCGTACC+AGG + chr3_2:72731144-72731163 Msa0423060:CDS 60.0%
ACTATCCAGGCGTACCAGGG+TGG + chr3_2:72731148-72731167 Msa0423060:CDS 60.0%
CTATCCAGGCGTACCAGGGT+GGG + chr3_2:72731149-72731168 Msa0423060:CDS 60.0%
! CTGTGAGGATACCGGTTGGG+TGG + chr3_2:72731882-72731901 Msa0423060:CDS 60.0%
! TGAGGATACCGGTTGGGTGG+TGG + chr3_2:72731885-72731904 Msa0423060:CDS 60.0%
GCTGCTCCCGGTTCCCAAAA+TGG + chr3_2:72732123-72732142 Msa0423060:CDS 60.0%
TCATCCCACCCTGGTACGCC+TGG - chr3_2:72731156-72731175 None:intergenic 65.0%
GGGAACCGGGAGCAGCATGA+AGG - chr3_2:72732119-72732138 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 72728918 72734054 72728918 ID=Msa0423060;Name=Msa0423060
chr3_2 mRNA 72728918 72734054 72728918 ID=Msa0423060-mRNA-1;Parent=Msa0423060;Name=Msa0423060-mRNA-1;_AED=0.08;_eAED=0.08;_QI=276|1|1|1|0.9|0.90|11|279|533
chr3_2 exon 72728918 72729185 72728918 ID=Msa0423060-mRNA-1:exon:18007;Parent=Msa0423060-mRNA-1
chr3_2 exon 72729304 72729387 72729304 ID=Msa0423060-mRNA-1:exon:18008;Parent=Msa0423060-mRNA-1
chr3_2 exon 72729498 72729613 72729498 ID=Msa0423060-mRNA-1:exon:18009;Parent=Msa0423060-mRNA-1
chr3_2 exon 72730311 72730430 72730311 ID=Msa0423060-mRNA-1:exon:18010;Parent=Msa0423060-mRNA-1
chr3_2 exon 72730713 72730898 72730713 ID=Msa0423060-mRNA-1:exon:18011;Parent=Msa0423060-mRNA-1
chr3_2 exon 72731120 72731278 72731120 ID=Msa0423060-mRNA-1:exon:18012;Parent=Msa0423060-mRNA-1
chr3_2 exon 72731818 72731987 72731818 ID=Msa0423060-mRNA-1:exon:18013;Parent=Msa0423060-mRNA-1
chr3_2 exon 72732089 72732244 72732089 ID=Msa0423060-mRNA-1:exon:18014;Parent=Msa0423060-mRNA-1
chr3_2 exon 72732500 72732852 72732500 ID=Msa0423060-mRNA-1:exon:18015;Parent=Msa0423060-mRNA-1
chr3_2 exon 72733430 72733609 72733430 ID=Msa0423060-mRNA-1:exon:18016;Parent=Msa0423060-mRNA-1
chr3_2 exon 72733690 72734054 72733690 ID=Msa0423060-mRNA-1:exon:18017;Parent=Msa0423060-mRNA-1
chr3_2 five_prime_UTR 72728918 72729185 72728918 ID=Msa0423060-mRNA-1:five_prime_utr;Parent=Msa0423060-mRNA-1
chr3_2 five_prime_UTR 72729304 72729311 72729304 ID=Msa0423060-mRNA-1:five_prime_utr;Parent=Msa0423060-mRNA-1
chr3_2 CDS 72729312 72729387 72729312 ID=Msa0423060-mRNA-1:cds;Parent=Msa0423060-mRNA-1
chr3_2 CDS 72729498 72729613 72729498 ID=Msa0423060-mRNA-1:cds;Parent=Msa0423060-mRNA-1
chr3_2 CDS 72730311 72730430 72730311 ID=Msa0423060-mRNA-1:cds;Parent=Msa0423060-mRNA-1
chr3_2 CDS 72730713 72730898 72730713 ID=Msa0423060-mRNA-1:cds;Parent=Msa0423060-mRNA-1
chr3_2 CDS 72731120 72731278 72731120 ID=Msa0423060-mRNA-1:cds;Parent=Msa0423060-mRNA-1
chr3_2 CDS 72731818 72731987 72731818 ID=Msa0423060-mRNA-1:cds;Parent=Msa0423060-mRNA-1
chr3_2 CDS 72732089 72732244 72732089 ID=Msa0423060-mRNA-1:cds;Parent=Msa0423060-mRNA-1
chr3_2 CDS 72732500 72732852 72732500 ID=Msa0423060-mRNA-1:cds;Parent=Msa0423060-mRNA-1
chr3_2 CDS 72733430 72733609 72733430 ID=Msa0423060-mRNA-1:cds;Parent=Msa0423060-mRNA-1
chr3_2 CDS 72733690 72733775 72733690 ID=Msa0423060-mRNA-1:cds;Parent=Msa0423060-mRNA-1
chr3_2 three_prime_UTR 72733776 72734054 72733776 ID=Msa0423060-mRNA-1:three_prime_utr;Parent=Msa0423060-mRNA-1
Gene Sequence

>Msa0423060

ATGGGACTTGTTTTTACCAAATGGGCATGCATTTTTTTACTGTCTTGTTTTTTCATCACTTCTGGAGTATATTCAGTGGAGGGGTTACATGGTGGATTTAAAGTTAGAGGAGTGAACTTAGGAGGGTGGCTTGTTATTGAAGGTTGGATCAAACCTTCTTTGTTTGATGGCATTGCCAATGGAGACATGCTTGATGGGACAGAAGTGCAGCTTAAGTCAGTGACATTGCAGAAATATGTATCTGCAGACAATGGGGGAGGAATGAATGTGACAGTTGACAGGGATTCCCCATCTTCATGGGAAACATTCAGGTTGTGGAGAGTATCTGAATCTGAATTTCAATTCCGTACCAATCAAGGCCCATTTCTTACATGTGACGGTGGAGGCTGCACTGTCTCTGCAACAGCAAAATCGCCTTCAACGTCTGAGACATTTGAAGTTAAGCGTAATGAGAAAAATAAGGTTCACATCAAGATAAAGAATGGACCCTATCTGCAGGCTACAACTGGTAATCAGCTTACAGCAGACTATCCAGGCGTACCAGGGTGGGATGATAATTCAGCCACATTTGAAATGATAATTGTATCTAATAACCTACATGGAGATTACCAGTTAGCAAATGGTTATGGACATGAGAGCGCCGAAGATGTTCTTAGGAGACATAGAAATAGCTATATTACAGTAGAGGATTTCAAATTTCTATATGAACATGGAATAAATACTGTGAGGATACCGGTTGGGTGGTGGATTGCTTTTGATCCTGATCCTCCAAGTCCATTTATTGGAGGAAGTCTTGAAGCTCTAGATAATGCATTTTCATGGGCACAAGAATATGATATAAAATGCATTATTGACCTTCATGCTGCTCCCGGTTCCCAAAATGGAATGGAGCATAGTGCAAGCAGAGATGGTTTTACAGGCTGGCCAACTTCTCCAGATTACATTTCAAAGTCATTACATGTTATTGAATTTTTAATTTCTAGATTTGCAAAGCATCCTGCCTTGCTGGGAATTGAGCTTTTGAATGAACCATCATCTGGCACAGTTTCTTTAGATATTTTAATTTCCTATTACAAGCAAGGCTACCAAATCGTTCGGAAATATTCGTCGACAGCTTATGTGATAATGTGCCAGAGAATTGGCAATGCAGATCCTTTGGAGCTTTATCAAGCCAACATAGGATCTACCAACTTAGTTTTGGATTTGCATTTCTACAACCTCTTTGACACATTCTTTGTTAATATGAGTGCTGGTGATAATGTACAATACATATTCAAAAGTCGGGAAGGTCTGTTGCAGGCCTTCAACAATTCAAATGGCCCGCTAATTTTTATTGGAGAGTGGGTGAATGAGTGGGATGTGACAAGCGGATCCCTAACAGATTATCAAGACTTTGGAAAGGCACAATTAGACGTCTATAATGCAGTTTCCTTTGGTTGGTGTTATTGGACTTTAAAAAATGACAGGGAGCACTGGGATTTTGAATGGAACATTAGGAACAACTATCTTCAATTAGGGTTATCACCCAACAATCAGAATATATACACTTTGGGACTCTTTGGATTGGCTTTCACCTGGTTTTGTCTTGTTTACTTTTTGTGA

Protein sequence

>Msa0423060

MGLVFTKWACIFLLSCFFITSGVYSVEGLHGGFKVRGVNLGGWLVIEGWIKPSLFDGIANGDMLDGTEVQLKSVTLQKYVSADNGGGMNVTVDRDSPSSWETFRLWRVSESEFQFRTNQGPFLTCDGGGCTVSATAKSPSTSETFEVKRNEKNKVHIKIKNGPYLQATTGNQLTADYPGVPGWDDNSATFEMIIVSNNLHGDYQLANGYGHESAEDVLRRHRNSYITVEDFKFLYEHGINTVRIPVGWWIAFDPDPPSPFIGGSLEALDNAFSWAQEYDIKCIIDLHAAPGSQNGMEHSASRDGFTGWPTSPDYISKSLHVIEFLISRFAKHPALLGIELLNEPSSGTVSLDILISYYKQGYQIVRKYSSTAYVIMCQRIGNADPLELYQANIGSTNLVLDLHFYNLFDTFFVNMSAGDNVQYIFKSREGLLQAFNNSNGPLIFIGEWVNEWDVTSGSLTDYQDFGKAQLDVYNAVSFGWCYWTLKNDREHWDFEWNIRNNYLQLGLSPNNQNIYTLGLFGLAFTWFCLVYFL*