AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0423540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0423540 MtrunA17_Chr3g0117751 98.571 630 9 0 1 630 1 630 0.0 1281
Msa0423540 MtrunA17_Chr4g0049841 38.679 636 318 15 53 630 87 708 2.32e-131 402
Msa0423540 MtrunA17_Chr4g0059151 52.128 94 42 2 237 330 1 91 4.64e-18 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0423540 AT1G27510.1 58.467 561 223 6 77 630 94 651 0.0 630
Msa0423540 AT4G33630.1 37.902 591 308 15 74 628 115 682 9.67e-113 353
Msa0423540 AT4G33630.2 37.902 591 308 15 74 628 115 682 9.67e-113 353
Msa0423540 AT4G33630.3 37.902 591 308 15 74 628 115 682 9.67e-113 353

Find 216 sgRNAs with CRISPR-Local

Find 455 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAAGGTGGGTGGTTTATT+AGG 0.161975 3_2:-73455240 None:intergenic
CTGATGTTGCTAAGGCCTTT+TGG 0.172201 3_2:+73458348 Msa0423540:CDS
CCCCATCTTTACTTGCTAAA+AGG 0.204998 3_2:+73457766 Msa0423540:CDS
AAGAAGCAGCAAAGCTAAAA+AGG 0.212205 3_2:+73456286 Msa0423540:CDS
GTCCAATTGAGACGAAAATT+TGG 0.216706 3_2:+73459508 Msa0423540:CDS
GGGGAATTGCTTCAACTTAA+TGG 0.218721 3_2:+73460636 Msa0423540:CDS
AATTCCCCATCAACCCATTT+TGG 0.219963 3_2:-73460621 None:intergenic
ACCACATAAATTTCAAATAA+TGG 0.225854 3_2:-73457316 None:intergenic
ACTATATATATTTATATATA+GGG 0.243141 3_2:-73461675 None:intergenic
CGATGTTTCATTGGTGGAAT+TGG 0.248055 3_2:-73455334 None:intergenic
GGGATCCTTTATGTGCATTA+TGG 0.255430 3_2:+73461157 Msa0423540:three_prime_UTR
TTAGATATGAAGCTCTTTAT+TGG 0.256773 3_2:+73458125 Msa0423540:CDS
CTCTCCTCAACCTTGTCTTC+AGG 0.264597 3_2:-73457837 None:intergenic
GACAATTTCACGCATGCTTT+TGG 0.267932 3_2:-73459255 None:intergenic
ATGAAACATCGTCTCTTAAC+TGG 0.278764 3_2:+73455346 Msa0423540:CDS
GGACTCTATGTTGGTGCATT+TGG 0.288125 3_2:+73459466 Msa0423540:intron
TACTATATATATTTATATAT+AGG 0.294292 3_2:-73461676 None:intergenic
CTTTATGTGCATTATGGTTA+TGG 0.295677 3_2:+73461163 Msa0423540:three_prime_UTR
GTGACATTCCGTGCTAAAAT+TGG 0.301622 3_2:+73459752 Msa0423540:CDS
GTTGGTGCATTTGGACCTTA+TGG 0.309966 3_2:+73459475 Msa0423540:CDS
CAATTTCGGTTTGGCTAGTT+TGG 0.327565 3_2:+73461585 Msa0423540:three_prime_UTR
GAACCTTCTTAAAACTCTTC+TGG 0.328947 3_2:+73461324 Msa0423540:three_prime_UTR
AAAAGGTGGGTGGTTTATTA+GGG 0.340290 3_2:-73455239 None:intergenic
AAACAGAATGCAAGTTATAA+AGG 0.347493 3_2:+73460564 Msa0423540:intron
AATGAAGCCATCACCATGTT+TGG 0.355124 3_2:-73455153 None:intergenic
CTGTGTGCCTTCTTGTTTGT+GGG 0.355176 3_2:+73461186 Msa0423540:three_prime_UTR
AAACATGGTGATGGCTTCAT+TGG 0.355898 3_2:+73455155 Msa0423540:exon
CGAAATCCAAAATGGGTTGA+TGG 0.365952 3_2:+73460615 Msa0423540:CDS
GTTACTCGTTGAATTTCCTT+TGG 0.371590 3_2:-73457739 None:intergenic
ATTGTCCCCGATGTCAATTT+CGG 0.372554 3_2:+73461571 Msa0423540:three_prime_UTR
TGGACTGTATCCTGATGAAT+TGG 0.374202 3_2:+73459799 Msa0423540:CDS
CAATGAAGATAATTCTTCTA+AGG 0.375818 3_2:+73458163 Msa0423540:CDS
TGCAGGTGGGTTGGTGGGTA+GGG 0.377171 3_2:+73457105 Msa0423540:intron
ATGCAGGTGGGTTGGTGGGT+AGG 0.378183 3_2:+73457104 Msa0423540:intron
GGTGATGTGTAGAGATAAAA+AGG 0.383930 3_2:+73461707 Msa0423540:three_prime_UTR
ATTATTTAGTCTTAAAAGAA+AGG 0.384034 3_2:+73461447 Msa0423540:three_prime_UTR
CAGTTGCTCACGGCATCTAC+TGG 0.384126 3_2:+73457289 Msa0423540:CDS
CAGGGAAGAAAGAAATTTAG+AGG 0.388405 3_2:-73460901 None:intergenic
TGAAATTATGTCTCAGTTGA+AGG 0.389115 3_2:+73456344 Msa0423540:CDS
CCCCGATGTCAATTTCGGTT+TGG 0.393772 3_2:+73461576 Msa0423540:three_prime_UTR
CTTGAAAAGATTGAGATTGA+AGG 0.405945 3_2:-73455276 None:intergenic
CACATGAAAGGAGCAGATCT+TGG 0.407586 3_2:+73460801 Msa0423540:CDS
CATCGTCTCTTAACTGGGAT+TGG 0.411910 3_2:+73455352 Msa0423540:CDS
TTGAGTTGGCCTGGTGGTGT+TGG 0.413303 3_2:+73461506 Msa0423540:three_prime_UTR
GTTAAGAGACGATGTTTCAT+TGG 0.413805 3_2:-73455343 None:intergenic
ATACGTATTATTCTACCAAA+AGG 0.416476 3_2:-73457149 None:intergenic
ACATATGATAACATAGAGAT+TGG 0.417262 3_2:-73461077 None:intergenic
TTCTGCTGTGTTTAGGGCAT+GGG 0.420342 3_2:+73460774 Msa0423540:intron
TTCTGATAAAGTCTCTTCTA+AGG 0.422012 3_2:+73458373 Msa0423540:CDS
CTTCCCTGACGTTGGTGGGT+TGG 0.425330 3_2:+73460916 Msa0423540:three_prime_UTR
CTTTCTTCCCTGACGTTGGT+GGG 0.425639 3_2:+73460912 Msa0423540:three_prime_UTR
CCATTTCGATGATATTGAAC+AGG 0.427605 3_2:+73455389 Msa0423540:CDS
TTTGATGCAGGCAGAATACC+TGG 0.427706 3_2:-73461214 None:intergenic
CATAACCATAATGCACATAA+AGG 0.433042 3_2:-73461162 None:intergenic
TTTGCTCGGGCACAGCATAA+AGG 0.436923 3_2:-73460827 None:intergenic
ATGGTAGCGCTCATCGTCTA+TGG 0.438503 3_2:-73456458 None:intergenic
TGATGGGGAAGATGATAATC+TGG 0.438817 3_2:+73458043 Msa0423540:CDS
AGGAGCTATAGAAAGACCTT+AGG 0.444366 3_2:+73461136 Msa0423540:three_prime_UTR
AATTTCAGCAACACTATCCT+TGG 0.446349 3_2:-73456328 None:intergenic
GATTCTAGAGTGACCTCATC+AGG 0.448858 3_2:-73458071 None:intergenic
GAAGACAAATTCTCAACCTC+TGG 0.449834 3_2:-73457798 None:intergenic
AATACGTATTAGTCCTGGTA+TGG 0.450044 3_2:+73457163 Msa0423540:CDS
TTCTCCTAGGTATGTGTAAG+AGG 0.451576 3_2:-73458238 None:intergenic
CCCCTCTGGGACTTGCAATC+CGG 0.451843 3_2:-73459337 None:intergenic
TTTACCACTCCCAATTCATC+AGG 0.451893 3_2:-73459809 None:intergenic
CCGGTTAAAATATGTATCTT+CGG 0.453570 3_2:-73459318 None:intergenic
TACTCCAACCCACCAACGTC+AGG 0.455413 3_2:-73460920 None:intergenic
TCTTTCTTCCCTGACGTTGG+TGG 0.456581 3_2:+73460911 Msa0423540:three_prime_UTR
TCTTAATGTTCCTGCAGGCC+AGG 0.458683 3_2:+73459615 Msa0423540:CDS
CCTGTTCAATATCATCGAAA+TGG 0.458726 3_2:-73455389 None:intergenic
TGTTGAAGAGGAAGCAAGAG+AGG 0.459335 3_2:+73457974 Msa0423540:CDS
TGGACTATTTCGATGCCATA+AGG 0.462771 3_2:-73459490 None:intergenic
GCTGTGTGCCTTCTTGTTTG+TGG 0.463974 3_2:+73461185 Msa0423540:three_prime_UTR
AAAGAATGTGGTTAAAGTAT+TGG 0.466373 3_2:+73461625 Msa0423540:three_prime_UTR
GCAAATGTTAGTCTGTTAGT+AGG 0.473639 3_2:+73461273 Msa0423540:three_prime_UTR
GTGGTGTTGGCTTAAGACCT+TGG 0.473768 3_2:+73461519 Msa0423540:three_prime_UTR
AACATGGTGATGGCTTCATT+GGG 0.475966 3_2:+73455156 Msa0423540:exon
CAGGGGAGAATAGCAGACTT+TGG 0.477233 3_2:+73460588 Msa0423540:CDS
TGTTGTTAAATCACTTGAGT+TGG 0.479925 3_2:+73461492 Msa0423540:three_prime_UTR
CAATATCAAAGTGGCAGCAC+TGG 0.480476 3_2:+73458295 Msa0423540:CDS
TCTTGTTTGTGGGAAGTCCC+AGG 0.481587 3_2:+73461196 Msa0423540:three_prime_UTR
CTAGCGGCTTCCTTTGATGC+AGG 0.482036 3_2:-73461226 None:intergenic
TTCTCAACCTCTGGTTTCGA+TGG 0.484470 3_2:-73457789 None:intergenic
GACTTTATCAGAACCCCAAA+AGG 0.484724 3_2:-73458363 None:intergenic
GAAATCCAAAATGGGTTGAT+GGG 0.485558 3_2:+73460616 Msa0423540:CDS
CTTACTCAGGTAGTTTCAAT+CGG 0.485754 3_2:-73460869 None:intergenic
TACTGACAAAATAGTGTGCC+AGG 0.485915 3_2:+73461116 Msa0423540:three_prime_UTR
GCCAAACCGAAATTGACATC+GGG 0.486810 3_2:-73461577 None:intergenic
TCCATGTTCTTTATTTCCGC+TGG 0.487068 3_2:-73458203 None:intergenic
AGGTATTCTGCCTGCATCAA+AGG 0.487215 3_2:+73461216 Msa0423540:three_prime_UTR
ATTGAAACGAGAAGGGGTTG+TGG 0.487688 3_2:-73455211 None:intergenic
GAAAGGATCAAAATCCCCTC+TGG 0.488511 3_2:-73459351 None:intergenic
TTATGCAGATACACTGGAAG+TGG 0.490425 3_2:+73456493 Msa0423540:CDS
GCCATTATTTGAAATTTATG+TGG 0.490547 3_2:+73457315 Msa0423540:CDS
TTGAAAAGATTGAGATTGAA+GGG 0.492033 3_2:-73455275 None:intergenic
TGAGACGAAAATTTGGACAT+TGG 0.493193 3_2:+73459515 Msa0423540:CDS
TGATTCTATTAAACAAATCA+TGG 0.497999 3_2:+73458001 Msa0423540:CDS
GAATGCAAGTTATAAAGGCC+AGG 0.498164 3_2:+73460569 Msa0423540:intron
TGATGCCTCGGATGAAGAAA+AGG 0.498997 3_2:+73458100 Msa0423540:CDS
TTAAATCACTTGAGTTGGCC+TGG 0.499949 3_2:+73461497 Msa0423540:three_prime_UTR
GGTGGAGATTGAAACGAGAA+GGG 0.500468 3_2:-73455218 None:intergenic
GCATAAACCACCTGGCCTGC+AGG 0.501097 3_2:-73459625 None:intergenic
TATGCCTTCTGATGTTGCTA+AGG 0.502960 3_2:+73458340 Msa0423540:CDS
TATGAACATTAATGTTGAAG+AGG 0.506769 3_2:+73457962 Msa0423540:CDS
TACGTATTATTCTACCAAAA+GGG 0.507649 3_2:-73457148 None:intergenic
TAAGGTCTTTCTATAGCTCC+TGG 0.509013 3_2:-73461134 None:intergenic
GGAAATAAAGAACATGGAAA+GGG 0.510999 3_2:+73458208 Msa0423540:CDS
CCAACGAACCTGCCCATACC+AGG 0.513196 3_2:-73457176 None:intergenic
GAAGATGGTAATAAAACTGA+TGG 0.516351 3_2:+73458026 Msa0423540:CDS
TAGCTCGGTTGGTGCATTGA+GGG 0.518283 3_2:-73461350 None:intergenic
GTTGGTGGGTTGGAGTATGA+AGG 0.520129 3_2:+73460926 Msa0423540:three_prime_UTR
CGGAAATAAAGAACATGGAA+AGG 0.521393 3_2:+73458207 Msa0423540:CDS
AGGTGGGTGGTTTATTAGGG+TGG 0.521884 3_2:-73455236 None:intergenic
TGTTAGAGAAGAAGATGGCT+TGG 0.522355 3_2:-73455185 None:intergenic
GGGTGGAGATTGAAACGAGA+AGG 0.523867 3_2:-73455219 None:intergenic
GGGGATCTTAATGTTCCTGC+AGG 0.523907 3_2:+73459610 Msa0423540:CDS
GTTAGAGAAGAAGATGGCTT+GGG 0.525579 3_2:-73455184 None:intergenic
GATATGAAGCTCTTTATTGG+CGG 0.526968 3_2:+73458128 Msa0423540:CDS
GTAGAGGCAGTAAAATTGAC+TGG 0.527358 3_2:+73459589 Msa0423540:CDS
CATATGATAACATAGAGATT+GGG 0.528542 3_2:-73461076 None:intergenic
CCTGGTATGGGCAGGTTCGT+TGG 0.529200 3_2:+73457176 Msa0423540:CDS
ACTATCGCTCAATCAAGAAA+AGG 0.530223 3_2:-73460978 None:intergenic
AAGAGACGATGTTTCATTGG+TGG 0.531737 3_2:-73455340 None:intergenic
GTTGAAGAGGAAGCAAGAGA+GGG 0.534106 3_2:+73457975 Msa0423540:CDS
TAGCACAAGAAAACTTTGCT+CGG 0.535045 3_2:-73460841 None:intergenic
TGAGAATTTGTCTTCAGTTG+AGG 0.535965 3_2:+73457806 Msa0423540:CDS
TGGAGGTGCATCGTAGAAAG+TGG 0.536801 3_2:-73455314 None:intergenic
GGAGCTATAGAAAGACCTTA+GGG 0.537298 3_2:+73461137 Msa0423540:three_prime_UTR
GGAGAAATCTCGATAATGAC+AGG 0.537424 3_2:+73458255 Msa0423540:CDS
AAACAAATCATGGAGGAAGA+TGG 0.541939 3_2:+73458011 Msa0423540:CDS
AGAATCTGACGGTGATGCCT+CGG 0.543268 3_2:+73458088 Msa0423540:CDS
TGTTTCATTGGTGGAATTGG+AGG 0.543784 3_2:-73455331 None:intergenic
AAGATGGTAATAAAACTGAT+GGG 0.547404 3_2:+73458027 Msa0423540:CDS
CAATGTTGAGGCGGCAACTG+AGG 0.550842 3_2:+73457878 Msa0423540:CDS
CAAAGTCTGCTATTCTCCCC+TGG 0.551350 3_2:-73460587 None:intergenic
TCAAAATTATGCAGATACAC+TGG 0.555623 3_2:+73456487 Msa0423540:CDS
CTTTCCTCTTACACATACCT+AGG 0.559843 3_2:+73458234 Msa0423540:CDS
AGCACAAGAAAACTTTGCTC+GGG 0.559857 3_2:-73460840 None:intergenic
AATAAAACTTTAATTACTAG+CGG 0.560665 3_2:-73461242 None:intergenic
GGAGGTGCATCGTAGAAAGT+GGG 0.560948 3_2:-73455313 None:intergenic
TTAACTGGGATTGGAATCGT+TGG 0.561945 3_2:+73455361 Msa0423540:CDS
ACTTGAAGATGCTATTGAGA+AGG 0.562925 3_2:+73456254 Msa0423540:CDS
AGAATAATACGTATTAGTCC+TGG 0.563260 3_2:+73457158 Msa0423540:CDS
ATTGCTTCAACTTAATGGCA+AGG 0.564516 3_2:+73460641 Msa0423540:CDS
TTGGCAAGAGTTACAGTCCA+AGG 0.564564 3_2:+73457195 Msa0423540:CDS
ATTTCTTTCTTCCCTGACGT+TGG 0.566086 3_2:+73460908 Msa0423540:three_prime_UTR
GTTGAGGCGGCAACTGAGGA+TGG 0.566825 3_2:+73457882 Msa0423540:CDS
AGTTGCTCACGGCATCTACT+GGG 0.567853 3_2:+73457290 Msa0423540:CDS
GTGTATTTGCGACGAGCCAA+AGG 0.568572 3_2:+73457723 Msa0423540:CDS
GGTCTTAAGCCAACACCACC+AGG 0.569425 3_2:-73461515 None:intergenic
AAAGGATCAAAATCCCCTCT+GGG 0.570948 3_2:-73459350 None:intergenic
TGAAACATCGTCTCTTAACT+GGG 0.570992 3_2:+73455347 Msa0423540:CDS
AGATCTGCTCCTTTCATGTG+TGG 0.571340 3_2:-73460798 None:intergenic
GGACTGTATCCTGATGAATT+GGG 0.571701 3_2:+73459800 Msa0423540:CDS
CACAAACAACAAACCAAACA+TGG 0.573403 3_2:+73455140 Msa0423540:exon
GTATTAGTCCTGGTATGGGC+AGG 0.574333 3_2:+73457168 Msa0423540:CDS
TCATTATCGAGATTTCTCCT+AGG 0.575590 3_2:-73458251 None:intergenic
ACCGGATTGCAAGTCCCAGA+GGG 0.577368 3_2:+73459336 Msa0423540:CDS
AAGCTTTGCATCTCTTCTCA+AGG 0.579029 3_2:+73455416 Msa0423540:CDS
CTAGTCTCGCGTAGATAGCT+CGG 0.579515 3_2:-73461365 None:intergenic
AATGCAAGTTATAAAGGCCA+GGG 0.581602 3_2:+73460570 Msa0423540:CDS
ATATATAGGGATCGATGTTG+AGG 0.586196 3_2:-73461662 None:intergenic
TAGAGGCAGTAAAATTGACT+GGG 0.586779 3_2:+73459590 Msa0423540:CDS
AGGGAAGAAAGAAATTTAGA+GGG 0.588063 3_2:-73460900 None:intergenic
ATTTGGACATTGGAATGATG+TGG 0.588530 3_2:+73459525 Msa0423540:CDS
ATAGCTCGGTTGGTGCATTG+AGG 0.591650 3_2:-73461351 None:intergenic
TCCAGCGGAAATAAAGAACA+TGG 0.592636 3_2:+73458202 Msa0423540:CDS
CAGATACACTGGAAGTGGAC+TGG 0.592729 3_2:+73456498 Msa0423540:CDS
ATACGTATTAGTCCTGGTAT+GGG 0.594549 3_2:+73457164 Msa0423540:CDS
GGTTGTGTTAGAGAAGAAGA+TGG 0.598527 3_2:-73455190 None:intergenic
TGACGACACATATCATATGC+AGG 0.602020 3_2:+73457348 Msa0423540:CDS
AGAACCTGAAGACAAGGTTG+AGG 0.605973 3_2:+73457833 Msa0423540:CDS
GTCAACCGCAACGCCAACCG+TGG 0.607012 3_2:+73459779 Msa0423540:CDS
GGGACTTCCCACAAACAAGA+AGG 0.607023 3_2:-73461193 None:intergenic
CAACAAACCAAACATGGTGA+TGG 0.608461 3_2:+73455146 Msa0423540:exon
ATAACTTTGACTTTCAACCC+TGG 0.608548 3_2:-73457942 None:intergenic
GGCATGGGACCACACATGAA+AGG 0.609118 3_2:+73460789 Msa0423540:CDS
TAAAGTTCGCAATATCAAAG+TGG 0.611705 3_2:+73458286 Msa0423540:CDS
AAGGCCTTAGCAACATCAGA+AGG 0.612039 3_2:-73458344 None:intergenic
AGCCAAACCGAAATTGACAT+CGG 0.615980 3_2:-73461578 None:intergenic
ATAATAGAGTTGCGTATCTG+TGG 0.619138 3_2:+73461403 Msa0423540:three_prime_UTR
ATCGAACATAAGATCTTGAG+AGG 0.619247 3_2:-73461550 None:intergenic
AAATCCAAAATGGGTTGATG+GGG 0.623944 3_2:+73460617 Msa0423540:CDS
AATATATATAGTAATACTTG+TGG 0.625084 3_2:+73461686 Msa0423540:three_prime_UTR
ATCAGGATACAGTCCACGGT+TGG 0.625330 3_2:-73459792 None:intergenic
TATAGTTGAAGCGACATCCA+AGG 0.625332 3_2:+73456311 Msa0423540:CDS
ACAGTCCACGGTTGGCGTTG+CGG 0.626828 3_2:-73459784 None:intergenic
TAAGCCAACTCACCGTCGAA+AGG 0.627500 3_2:-73459368 None:intergenic
GTGGCAGCACTGGCAGCACA+AGG 0.629400 3_2:+73458305 Msa0423540:CDS
ATGCACATAAAGGATCCCTA+AGG 0.630826 3_2:-73461152 None:intergenic
TCTCGCGTAGATAGCTCGGT+TGG 0.630897 3_2:-73461361 None:intergenic
GAGGTCACTCTAGAATCTGA+CGG 0.632779 3_2:+73458077 Msa0423540:CDS
CTTGAGAGGAGCAAACTCCA+AGG 0.634030 3_2:-73461536 None:intergenic
TAAAATGCAGGACTCTATGT+TGG 0.634434 3_2:+73459457 Msa0423540:intron
GTATCCTGATGAATTGGGAG+TGG 0.636503 3_2:+73459805 Msa0423540:CDS
GAGGTGCATCGTAGAAAGTG+GGG 0.649102 3_2:-73455312 None:intergenic
ACTCCAACCCACCAACGTCA+GGG 0.651545 3_2:-73460919 None:intergenic
ATACTACAGACAGTTGCTCA+CGG 0.652024 3_2:+73457279 Msa0423540:intron
TGAATTTATACGTCTTCCAG+CGG 0.652090 3_2:+73458187 Msa0423540:CDS
GAAATTATAAAGGCATCGTG+AGG 0.653656 3_2:-73461036 None:intergenic
AGATGGTAATAAAACTGATG+GGG 0.654724 3_2:+73458028 Msa0423540:CDS
ATTCATCAGGATACAGTCCA+CGG 0.657204 3_2:-73459796 None:intergenic
GGTGCAAGAACCTGAAGACA+AGG 0.663351 3_2:+73457827 Msa0423540:CDS
TTGATGCAGGCAGAATACCT+GGG 0.663906 3_2:-73461213 None:intergenic
AACCGGATTGCAAGTCCCAG+AGG 0.666112 3_2:+73459335 Msa0423540:CDS
TAATCTGGATGAACCTGATG+AGG 0.667712 3_2:+73458058 Msa0423540:CDS
GTGGAGATTGAAACGAGAAG+GGG 0.675116 3_2:-73455217 None:intergenic
AATCACTTGAGTTGGCCTGG+TGG 0.675244 3_2:+73461500 Msa0423540:three_prime_UTR
AGGTGCATCGTAGAAAGTGG+GGG 0.682293 3_2:-73455311 None:intergenic
CCGGATTGCAAGTCCCAGAG+GGG 0.701896 3_2:+73459337 Msa0423540:CDS
ATGCAAGTTATAAAGGCCAG+GGG 0.705064 3_2:+73460571 Msa0423540:CDS
GGTGCATCGTAGAAAGTGGG+GGG 0.711235 3_2:-73455310 None:intergenic
TAAAAGGCCATCGAAACCAG+AGG 0.713071 3_2:+73457782 Msa0423540:CDS
TTCTATTAAACAAATCATGG+AGG 0.716498 3_2:+73458004 Msa0423540:CDS
CCAAACCGAAATTGACATCG+GGG 0.737688 3_2:-73461576 None:intergenic
AGAGGCAGTAAAATTGACTG+GGG 0.742487 3_2:+73459591 Msa0423540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAATAAAAAAGAAGAA+AGG - chr3_2:73455444-73455463 None:intergenic 10.0%
!!! TGATTATATCATTTAAAATT+TGG + chr3_2:73459400-73459419 Msa0423540:intron 10.0%
!!! GATTATATCATTTAAAATTT+GGG + chr3_2:73459401-73459420 Msa0423540:intron 10.0%
!!! TTTTAAAATGTATTTTATTG+AGG + chr3_2:73460423-73460442 Msa0423540:intron 10.0%
!!! TTAATTATATGCTTTTCTTT+TGG + chr3_2:73455499-73455518 Msa0423540:intron 15.0%
!! TTGAACTATAGAAATATAAT+AGG + chr3_2:73455887-73455906 Msa0423540:intron 15.0%
!! TGATTTATGAGTATTAATTA+CGG + chr3_2:73457002-73457021 Msa0423540:intron 15.0%
!! ATTTGAACATAAATGAATTA+TGG + chr3_2:73457525-73457544 Msa0423540:intron 15.0%
!!! AGAAAGCAATTTTTTTTTTA+TGG + chr3_2:73459722-73459741 Msa0423540:intron 15.0%
!!! ATTTTTTTTTTATGGTGTAT+AGG + chr3_2:73459730-73459749 Msa0423540:intron 15.0%
!! AATAAAACTTTAATTACTAG+CGG - chr3_2:73461245-73461264 None:intergenic 15.0%
!!! ATTATTTAGTCTTAAAAGAA+AGG + chr3_2:73461447-73461466 Msa0423540:three_prime_UTR 15.0%
!! AATATATATAGTAATACTTG+TGG + chr3_2:73461686-73461705 Msa0423540:three_prime_UTR 15.0%
!! AATAAAACACTATCATTCTA+TGG + chr3_2:73455852-73455871 Msa0423540:intron 20.0%
!! GTAGTATATAAACAATTCAT+CGG + chr3_2:73455909-73455928 Msa0423540:intron 20.0%
!! TGATCTATTGAAAATAGTTT+AGG + chr3_2:73455966-73455985 Msa0423540:intron 20.0%
!! ATATCTCTAGTAAGAATTAT+TGG + chr3_2:73456607-73456626 Msa0423540:intron 20.0%
!!! ACATTGAAATTTGAAATGAA+TGG + chr3_2:73456667-73456686 Msa0423540:intron 20.0%
!! TAGTATACAGAAATAAGTAT+TGG - chr3_2:73457265-73457284 None:intergenic 20.0%
!! ACCACATAAATTTCAAATAA+TGG - chr3_2:73457319-73457338 None:intergenic 20.0%
!! ACATAAATGAATTATGGAAT+TGG + chr3_2:73457531-73457550 Msa0423540:intron 20.0%
!! TTTCTTAAAGAAAAAATTCC+AGG + chr3_2:73457924-73457943 Msa0423540:CDS 20.0%
!! TTCTTAAAGAAAAAATTCCA+GGG + chr3_2:73457925-73457944 Msa0423540:CDS 20.0%
!! TGATTCTATTAAACAAATCA+TGG + chr3_2:73458001-73458020 Msa0423540:CDS 20.0%
!! TAGTATATTATAAACACTAG+AGG + chr3_2:73458596-73458615 Msa0423540:intron 20.0%
!! TTAAATCTAAGCATTTATGT+TGG - chr3_2:73459069-73459088 None:intergenic 20.0%
!! TAAATGATATAATCAACACA+AGG - chr3_2:73459395-73459414 None:intergenic 20.0%
!!! AAAAGTATATGAATGCAAAA+AGG - chr3_2:73459677-73459696 None:intergenic 20.0%
!! TCAAATAAATGTGAGAAAAT+TGG + chr3_2:73459995-73460014 Msa0423540:intron 20.0%
!!! ATTTTACTGATTTACATCTT+TGG + chr3_2:73460451-73460470 Msa0423540:intron 20.0%
!! GCAACAAAAAGAAATTATAA+AGG - chr3_2:73461049-73461068 None:intergenic 20.0%
!! AAAAAAAGAAAGAAAGAATG+TGG + chr3_2:73461613-73461632 Msa0423540:three_prime_UTR 20.0%
!!! TTGTTTTGAAAAGAAAAGGT+GGG - chr3_2:73455255-73455274 None:intergenic 25.0%
! TTGAAAAGATTGAGATTGAA+GGG - chr3_2:73455278-73455297 None:intergenic 25.0%
! TTAAAGACTGAATTGAATGA+AGG - chr3_2:73455659-73455678 None:intergenic 25.0%
! CTATCATTCTATGGTATATT+TGG + chr3_2:73455861-73455880 Msa0423540:intron 25.0%
!! TTCTCAAGTTCTTTAAGAAT+AGG + chr3_2:73455936-73455955 Msa0423540:intron 25.0%
! GTAAGATTATACCTTCAATT+TGG - chr3_2:73456089-73456108 None:intergenic 25.0%
! ATCACTTATTACAAATCTCA+CGG - chr3_2:73456754-73456773 None:intergenic 25.0%
! ACATCATCTATTATTATCGT+GGG - chr3_2:73456892-73456911 None:intergenic 25.0%
! AGTATTAATTACGGTACTAA+TGG + chr3_2:73457011-73457030 Msa0423540:intron 25.0%
! ATTCACAATTCACAAAAAGA+TGG - chr3_2:73457044-73457063 None:intergenic 25.0%
! AAAGGTAAAAAACAGTTGTT+GGG - chr3_2:73457082-73457101 None:intergenic 25.0%
! AAAAGGTAAAAAACAGTTGT+TGG - chr3_2:73457083-73457102 None:intergenic 25.0%
!!! TGTTTTTTACCTTTTTATGC+AGG + chr3_2:73457088-73457107 Msa0423540:intron 25.0%
! TACGTATTATTCTACCAAAA+GGG - chr3_2:73457151-73457170 None:intergenic 25.0%
! ATACGTATTATTCTACCAAA+AGG - chr3_2:73457152-73457171 None:intergenic 25.0%
! AAACTAGAAAGATTATACCT+TGG - chr3_2:73457215-73457234 None:intergenic 25.0%
!! GCCATTATTTGAAATTTATG+TGG + chr3_2:73457315-73457334 Msa0423540:CDS 25.0%
! TTGTAACTTAATGATACACT+AGG + chr3_2:73457408-73457427 Msa0423540:intron 25.0%
! TGTAACTTAATGATACACTA+GGG + chr3_2:73457409-73457428 Msa0423540:intron 25.0%
!!! CACAAACAAACATTTTAACT+AGG - chr3_2:73457446-73457465 None:intergenic 25.0%
! CTAGTTAAAATGTTTGTTTG+TGG + chr3_2:73457444-73457463 Msa0423540:intron 25.0%
!! ATGAACAAGTTTCTTCTTTT+AGG - chr3_2:73457497-73457516 None:intergenic 25.0%
!!! GAATTGGAATATCATTTTTG+CGG + chr3_2:73457547-73457566 Msa0423540:intron 25.0%
!!! GATTGATGTTTAGGTTTTTT+CGG + chr3_2:73457586-73457605 Msa0423540:intron 25.0%
! TCAGAAAAGGAAAATATCAA+AGG - chr3_2:73457639-73457658 None:intergenic 25.0%
! TAAAGGTGATTATTCAGAAA+AGG - chr3_2:73457652-73457671 None:intergenic 25.0%
! TATTTGACAACACACTTAAT+AGG + chr3_2:73457698-73457717 Msa0423540:intron 25.0%
! TATGAACATTAATGTTGAAG+AGG + chr3_2:73457962-73457981 Msa0423540:CDS 25.0%
! TTCTATTAAACAAATCATGG+AGG + chr3_2:73458004-73458023 Msa0423540:CDS 25.0%
! AAGATGGTAATAAAACTGAT+GGG + chr3_2:73458027-73458046 Msa0423540:CDS 25.0%
! TTAGATATGAAGCTCTTTAT+TGG + chr3_2:73458125-73458144 Msa0423540:CDS 25.0%
! CAATGAAGATAATTCTTCTA+AGG + chr3_2:73458163-73458182 Msa0423540:CDS 25.0%
! ATTATTATCATGATCGTAAC+TGG - chr3_2:73458507-73458526 None:intergenic 25.0%
!! ATTTTCATTTCTCCAAAATC+TGG + chr3_2:73458817-73458836 Msa0423540:intron 25.0%
!! TTTTCATTTCTCCAAAATCT+GGG + chr3_2:73458818-73458837 Msa0423540:intron 25.0%
!!! TTCTTACTTTCAAGTTTCAA+CGG - chr3_2:73458863-73458882 None:intergenic 25.0%
! ATAGCCAACTAAAAATTGAT+GGG - chr3_2:73458960-73458979 None:intergenic 25.0%
! AACATAATGTCATATTCTTG+AGG + chr3_2:73459093-73459112 Msa0423540:intron 25.0%
!!! AAGAAAAAGCAGTATTTTTG+AGG - chr3_2:73459196-73459215 None:intergenic 25.0%
! ATAACAGATTGTTTGAAAAC+AGG - chr3_2:73459892-73459911 None:intergenic 25.0%
!! AACTTTTCAAAAGAAGAATG+AGG - chr3_2:73460212-73460231 None:intergenic 25.0%
! GTTAAATATTAGCACATGTT+AGG + chr3_2:73460229-73460248 Msa0423540:intron 25.0%
! AGTTAATTACTATTCGAAAG+AGG - chr3_2:73460313-73460332 None:intergenic 25.0%
! ATGAAAACTCAAGAAAACTT+GGG - chr3_2:73460484-73460503 None:intergenic 25.0%
! AATGAAAACTCAAGAAAACT+TGG - chr3_2:73460485-73460504 None:intergenic 25.0%
!! GTTTTCTTGAGTTTTCATTT+TGG + chr3_2:73460486-73460505 Msa0423540:intron 25.0%
! AAACAGAATGCAAGTTATAA+AGG + chr3_2:73460564-73460583 Msa0423540:intron 25.0%
! CATATGATAACATAGAGATT+GGG - chr3_2:73461079-73461098 None:intergenic 25.0%
! ACATATGATAACATAGAGAT+TGG - chr3_2:73461080-73461099 None:intergenic 25.0%
! AAAGAATGTGGTTAAAGTAT+TGG + chr3_2:73461625-73461644 Msa0423540:three_prime_UTR 25.0%
!!! GTTGTTTTGAAAAGAAAAGG+TGG - chr3_2:73455256-73455275 None:intergenic 30.0%
!!! AGGGTTGTTTTGAAAAGAAA+AGG - chr3_2:73455259-73455278 None:intergenic 30.0%
CTTGAAAAGATTGAGATTGA+AGG - chr3_2:73455279-73455298 None:intergenic 30.0%
!! CAATCTCAATCTTTTCAAGA+AGG + chr3_2:73455280-73455299 Msa0423540:CDS 30.0%
! GCTTTTCTTTTGGCAAATTT+TGG + chr3_2:73455509-73455528 Msa0423540:intron 30.0%
TCAGAAATCTTGCAACATAA+AGG + chr3_2:73455556-73455575 Msa0423540:intron 30.0%
CAGAAATCTTGCAACATAAA+GGG + chr3_2:73455557-73455576 Msa0423540:intron 30.0%
AGAGAGAGAGTGATAATTTA+GGG + chr3_2:73456062-73456081 Msa0423540:intron 30.0%
TAATTTAGGGACCAAATTGA+AGG + chr3_2:73456075-73456094 Msa0423540:intron 30.0%
TGAAATTATGTCTCAGTTGA+AGG + chr3_2:73456344-73456363 Msa0423540:CDS 30.0%
! TCTCTTGATTTTCCTACTTA+TGG + chr3_2:73456399-73456418 Msa0423540:intron 30.0%
!!! TGCATAATTTTGAAGCATCA+TGG - chr3_2:73456480-73456499 None:intergenic 30.0%
TCAAAATTATGCAGATACAC+TGG + chr3_2:73456487-73456506 Msa0423540:CDS 30.0%
TCACTTATTACAAATCTCAC+GGG - chr3_2:73456753-73456772 None:intergenic 30.0%
CACATCATCTATTATTATCG+TGG - chr3_2:73456893-73456912 None:intergenic 30.0%
ATTGTGAATAATGCAGTTTC+CGG + chr3_2:73456919-73456938 Msa0423540:intron 30.0%
ACAAATCCATTTGAAAGATG+AGG - chr3_2:73456961-73456980 None:intergenic 30.0%
TCATAAATCATGACAACACT+TGG - chr3_2:73456992-73457011 None:intergenic 30.0%
! TTTTTACCTTTTTATGCAGG+TGG + chr3_2:73457091-73457110 Msa0423540:intron 30.0%
! TTTTACCTTTTTATGCAGGT+GGG + chr3_2:73457092-73457111 Msa0423540:intron 30.0%
AGAATAATACGTATTAGTCC+TGG + chr3_2:73457158-73457177 Msa0423540:CDS 30.0%
!!! CTTTTTTCCTTCAAGTGATT+GGG + chr3_2:73457236-73457255 Msa0423540:intron 30.0%
!!! TTTTTTCCTTCAAGTGATTG+GGG + chr3_2:73457237-73457256 Msa0423540:intron 30.0%
TACAAACAACAAGCATCATT+TGG - chr3_2:73457393-73457412 None:intergenic 30.0%
!! CAAGCTTTTGATTGATGTTT+AGG + chr3_2:73457577-73457596 Msa0423540:intron 30.0%
AGCATTACGTAAACTACTAA+AGG - chr3_2:73457669-73457688 None:intergenic 30.0%
GAAGATGGTAATAAAACTGA+TGG + chr3_2:73458026-73458045 Msa0423540:CDS 30.0%
AGATGGTAATAAAACTGATG+GGG + chr3_2:73458028-73458047 Msa0423540:CDS 30.0%
GGAAATAAAGAACATGGAAA+GGG + chr3_2:73458208-73458227 Msa0423540:CDS 30.0%
TAAAGTTCGCAATATCAAAG+TGG + chr3_2:73458286-73458305 Msa0423540:CDS 30.0%
TTCTGATAAAGTCTCTTCTA+AGG + chr3_2:73458373-73458392 Msa0423540:CDS 30.0%
TATTATAAACACTAGAGGTG+TGG + chr3_2:73458601-73458620 Msa0423540:intron 30.0%
ACGTATATTAGAGAAGAAAG+TGG + chr3_2:73458691-73458710 Msa0423540:intron 30.0%
TTTCATTTCTCCAAAATCTG+GGG + chr3_2:73458819-73458838 Msa0423540:intron 30.0%
TAGCCAACTAAAAATTGATG+GGG - chr3_2:73458959-73458978 None:intergenic 30.0%
CATAGCCAACTAAAAATTGA+TGG - chr3_2:73458961-73458980 None:intergenic 30.0%
!!! ATCTACTTTTTTTCTGTGCT+TGG - chr3_2:73459295-73459314 None:intergenic 30.0%
CCGGTTAAAATATGTATCTT+CGG - chr3_2:73459321-73459340 None:intergenic 30.0%
!!! CCGAAGATACATATTTTAAC+CGG + chr3_2:73459318-73459337 Msa0423540:CDS 30.0%
!! GCTTATAGAATGGATTTTTC+TGG + chr3_2:73459433-73459452 Msa0423540:intron 30.0%
!!! GATTTTTCTGGTTAAAATGC+AGG + chr3_2:73459445-73459464 Msa0423540:intron 30.0%
!!! CGAGTTTTTTGAATATGTAG+AGG + chr3_2:73459573-73459592 Msa0423540:CDS 30.0%
!! TGACTTTACCAATTTTAGCA+CGG - chr3_2:73459763-73459782 None:intergenic 30.0%
GTGGTAAATACATATTCACA+TGG + chr3_2:73459824-73459843 Msa0423540:intron 30.0%
! TTCTCACATTTATTTGAAGC+CGG - chr3_2:73459992-73460011 None:intergenic 30.0%
TTTGAAAAAAGCTATTCCAC+CGG + chr3_2:73460039-73460058 Msa0423540:intron 30.0%
TTATGTAAAGACAATGCATG+TGG + chr3_2:73460083-73460102 Msa0423540:intron 30.0%
! GCAAAACAACTTAAGCTTTT+TGG + chr3_2:73460107-73460126 Msa0423540:intron 30.0%
! TTTTGGATAGTTAGTTCAGT+CGG + chr3_2:73460124-73460143 Msa0423540:intron 30.0%
TTCACACTATTTGATCAAAG+AGG - chr3_2:73460174-73460193 None:intergenic 30.0%
! TTTTCAAAAGAAGAATGAGG+TGG - chr3_2:73460209-73460228 None:intergenic 30.0%
AAATATTAGCACATGTTAGG+CGG + chr3_2:73460232-73460251 Msa0423540:intron 30.0%
GAATGACTTCAGCATTAAAT+TGG - chr3_2:73460274-73460293 None:intergenic 30.0%
TTCAACTATGAGGAAATTGA+TGG - chr3_2:73460355-73460374 None:intergenic 30.0%
TTTCCTCATAGTTGAAATGT+TGG + chr3_2:73460359-73460378 Msa0423540:intron 30.0%
!! TTGGTTTTCGAAATCCAAAA+TGG + chr3_2:73460607-73460626 Msa0423540:CDS 30.0%
! TGGTTTTCGAAATCCAAAAT+GGG + chr3_2:73460608-73460627 Msa0423540:CDS 30.0%
TTAATGGCAAGGTAAATTAG+TGG + chr3_2:73460652-73460671 Msa0423540:intron 30.0%
! CAATATCCAAGCATGATTTT+TGG + chr3_2:73460697-73460716 Msa0423540:intron 30.0%
ATTAATGTTCTGCTGTGTTT+AGG + chr3_2:73460767-73460786 Msa0423540:intron 30.0%
TTAATGTTCTGCTGTGTTTA+GGG + chr3_2:73460768-73460787 Msa0423540:intron 30.0%
AGGGAAGAAAGAAATTTAGA+GGG - chr3_2:73460903-73460922 None:intergenic 30.0%
CATAACCATAATGCACATAA+AGG - chr3_2:73461165-73461184 None:intergenic 30.0%
CTTTATGTGCATTATGGTTA+TGG + chr3_2:73461163-73461182 Msa0423540:three_prime_UTR 30.0%
TGTTGTTAAATCACTTGAGT+TGG + chr3_2:73461492-73461511 Msa0423540:three_prime_UTR 30.0%
!! TTGGTTTGTTGTTTGTGACA+AGG - chr3_2:73455137-73455156 None:intergenic 35.0%
CACAAACAACAAACCAAACA+TGG + chr3_2:73455140-73455159 Msa0423540:exon 35.0%
AAAAGGTGGGTGGTTTATTA+GGG - chr3_2:73455242-73455261 None:intergenic 35.0%
!! TTTTGAAAAGAAAAGGTGGG+TGG - chr3_2:73455252-73455271 None:intergenic 35.0%
GTTAAGAGACGATGTTTCAT+TGG - chr3_2:73455346-73455365 None:intergenic 35.0%
ATGAAACATCGTCTCTTAAC+TGG + chr3_2:73455346-73455365 Msa0423540:CDS 35.0%
TGAAACATCGTCTCTTAACT+GGG + chr3_2:73455347-73455366 Msa0423540:CDS 35.0%
CCTGTTCAATATCATCGAAA+TGG - chr3_2:73455392-73455411 None:intergenic 35.0%
CCATTTCGATGATATTGAAC+AGG + chr3_2:73455389-73455408 Msa0423540:CDS 35.0%
CAAGATTTCTGAGCAAAAAG+GGG - chr3_2:73455548-73455567 None:intergenic 35.0%
GCAAGATTTCTGAGCAAAAA+GGG - chr3_2:73455549-73455568 None:intergenic 35.0%
TGCAAGATTTCTGAGCAAAA+AGG - chr3_2:73455550-73455569 None:intergenic 35.0%
AGTGTAAGTAAAGTTTAGCC+AGG - chr3_2:73455777-73455796 None:intergenic 35.0%
!! GTGTTTTATTGTTAACCCTC+CGG - chr3_2:73455842-73455861 None:intergenic 35.0%
TCGTAGACTGAAAATAGTTG+AGG + chr3_2:73455996-73456015 Msa0423540:intron 35.0%
GAGAGAGAGAGTGATAATTT+AGG + chr3_2:73456061-73456080 Msa0423540:intron 35.0%
ACTTGAAGATGCTATTGAGA+AGG + chr3_2:73456254-73456273 Msa0423540:CDS 35.0%
AAGAAGCAGCAAAGCTAAAA+AGG + chr3_2:73456286-73456305 Msa0423540:CDS 35.0%
AGAAGCAGCAAAGCTAAAAA+GGG + chr3_2:73456287-73456306 Msa0423540:CDS 35.0%
AATTTCAGCAACACTATCCT+TGG - chr3_2:73456331-73456350 None:intergenic 35.0%
ACGATAAACAAGCCATAAGT+AGG - chr3_2:73456414-73456433 None:intergenic 35.0%
TTGTGAATAATGCAGTTTCC+GGG + chr3_2:73456920-73456939 Msa0423540:intron 35.0%
AGATGACCTCATCTTTCAAA+TGG + chr3_2:73456952-73456971 Msa0423540:intron 35.0%
ATTCACAAAAAGATGGCTTG+AGG - chr3_2:73457037-73457056 None:intergenic 35.0%
! AGGGTACTCAAAAAATTCAG+AGG + chr3_2:73457124-73457143 Msa0423540:CDS 35.0%
! AAAAATTCAGAGGACCCTTT+TGG + chr3_2:73457134-73457153 Msa0423540:CDS 35.0%
AATACGTATTAGTCCTGGTA+TGG + chr3_2:73457163-73457182 Msa0423540:CDS 35.0%
ATACGTATTAGTCCTGGTAT+GGG + chr3_2:73457164-73457183 Msa0423540:CDS 35.0%
CCAATCACTTGAAGGAAAAA+AGG - chr3_2:73457238-73457257 None:intergenic 35.0%
!!! CCTTTTTTCCTTCAAGTGAT+TGG + chr3_2:73457235-73457254 Msa0423540:intron 35.0%
GTTACTCGTTGAATTTCCTT+TGG - chr3_2:73457742-73457761 None:intergenic 35.0%
! CTTTTAGCAAGTAAAGATGG+GGG - chr3_2:73457768-73457787 None:intergenic 35.0%
! CCTTTTAGCAAGTAAAGATG+GGG - chr3_2:73457769-73457788 None:intergenic 35.0%
! GCCTTTTAGCAAGTAAAGAT+GGG - chr3_2:73457770-73457789 None:intergenic 35.0%
TGAGAATTTGTCTTCAGTTG+AGG + chr3_2:73457806-73457825 Msa0423540:CDS 35.0%
TGAGAAAAACAGCAATGTTG+AGG + chr3_2:73457866-73457885 Msa0423540:CDS 35.0%
! ATAACTTTGACTTTCAACCC+TGG - chr3_2:73457945-73457964 None:intergenic 35.0%
AAACAAATCATGGAGGAAGA+TGG + chr3_2:73458011-73458030 Msa0423540:CDS 35.0%
! TAAATCCTTTTCTTCATCCG+AGG - chr3_2:73458108-73458127 None:intergenic 35.0%
GATATGAAGCTCTTTATTGG+CGG + chr3_2:73458128-73458147 Msa0423540:CDS 35.0%
TGAATTTATACGTCTTCCAG+CGG + chr3_2:73458187-73458206 Msa0423540:CDS 35.0%
CGGAAATAAAGAACATGGAA+AGG + chr3_2:73458207-73458226 Msa0423540:CDS 35.0%
TCATTATCGAGATTTCTCCT+AGG - chr3_2:73458254-73458273 None:intergenic 35.0%
!! GAAAGCATTTGTCATTGGTA+AGG - chr3_2:73458790-73458809 None:intergenic 35.0%
!! TGTGTGAAAGCATTTGTCAT+TGG - chr3_2:73458795-73458814 None:intergenic 35.0%
TTCATTTCTCCAAAATCTGG+GGG + chr3_2:73458820-73458839 Msa0423540:intron 35.0%
CAATGTAGATTATGACCACA+TGG - chr3_2:73458991-73459010 None:intergenic 35.0%
CTTGTCAATGAACTGACTAA+TGG + chr3_2:73459213-73459232 Msa0423540:intron 35.0%
TAAAATGCAGGACTCTATGT+TGG + chr3_2:73459457-73459476 Msa0423540:intron 35.0%
GTCCAATTGAGACGAAAATT+TGG + chr3_2:73459508-73459527 Msa0423540:CDS 35.0%
! GTCCAAATTTTCGTCTCAAT+TGG - chr3_2:73459513-73459532 None:intergenic 35.0%
TGAGACGAAAATTTGGACAT+TGG + chr3_2:73459515-73459534 Msa0423540:CDS 35.0%
ATTTGGACATTGGAATGATG+TGG + chr3_2:73459525-73459544 Msa0423540:CDS 35.0%
TAGAGGCAGTAAAATTGACT+GGG + chr3_2:73459590-73459609 Msa0423540:CDS 35.0%
GGAAAAAATAGTGCACACAT+AGG - chr3_2:73459952-73459971 None:intergenic 35.0%
!!! CCTATTTGTGCACTTTTTTC+CGG + chr3_2:73459970-73459989 Msa0423540:intron 35.0%
TTTGGATAGTTAGTTCAGTC+GGG + chr3_2:73460125-73460144 Msa0423540:intron 35.0%
TACTATTCGAAAGAGGAATG+AGG - chr3_2:73460306-73460325 None:intergenic 35.0%
CAACCAACATTTCAACTATG+AGG - chr3_2:73460365-73460384 None:intergenic 35.0%
TGCATTCTGTTTGTATACGA+GGG - chr3_2:73460556-73460575 None:intergenic 35.0%
TTGCATTCTGTTTGTATACG+AGG - chr3_2:73460557-73460576 None:intergenic 35.0%
AATGCAAGTTATAAAGGCCA+GGG + chr3_2:73460570-73460589 Msa0423540:CDS 35.0%
!! GAAATCCAAAATGGGTTGAT+GGG + chr3_2:73460616-73460635 Msa0423540:CDS 35.0%
!! AAATCCAAAATGGGTTGATG+GGG + chr3_2:73460617-73460636 Msa0423540:CDS 35.0%
ATTGCTTCAACTTAATGGCA+AGG + chr3_2:73460641-73460660 Msa0423540:CDS 35.0%
TAGCACAAGAAAACTTTGCT+CGG - chr3_2:73460844-73460863 None:intergenic 35.0%
CTTACTCAGGTAGTTTCAAT+CGG - chr3_2:73460872-73460891 None:intergenic 35.0%
CAGGGAAGAAAGAAATTTAG+AGG - chr3_2:73460904-73460923 None:intergenic 35.0%
ACTATCGCTCAATCAAGAAA+AGG - chr3_2:73460981-73461000 None:intergenic 35.0%
!! GAAATTATAAAGGCATCGTG+AGG - chr3_2:73461039-73461058 None:intergenic 35.0%
! GCAAATGTTAGTCTGTTAGT+AGG + chr3_2:73461273-73461292 Msa0423540:three_prime_UTR 35.0%
! TAGTTTTCGTGGTTTGAACT+CGG + chr3_2:73461301-73461320 Msa0423540:three_prime_UTR 35.0%
GAACCTTCTTAAAACTCTTC+TGG + chr3_2:73461324-73461343 Msa0423540:three_prime_UTR 35.0%
!!! ACACCAGAAGAGTTTTAAGA+AGG - chr3_2:73461330-73461349 None:intergenic 35.0%
ATAATAGAGTTGCGTATCTG+TGG + chr3_2:73461403-73461422 Msa0423540:three_prime_UTR 35.0%
ATCGAACATAAGATCTTGAG+AGG - chr3_2:73461553-73461572 None:intergenic 35.0%
ATATATAGGGATCGATGTTG+AGG - chr3_2:73461665-73461684 None:intergenic 35.0%
GGTGATGTGTAGAGATAAAA+AGG + chr3_2:73461707-73461726 Msa0423540:three_prime_UTR 35.0%
CAACAAACCAAACATGGTGA+TGG + chr3_2:73455146-73455165 Msa0423540:exon 40.0%
AATGAAGCCATCACCATGTT+TGG - chr3_2:73455156-73455175 None:intergenic 40.0%
!! AAACATGGTGATGGCTTCAT+TGG + chr3_2:73455155-73455174 Msa0423540:exon 40.0%
!! AACATGGTGATGGCTTCATT+GGG + chr3_2:73455156-73455175 Msa0423540:exon 40.0%
GTTAGAGAAGAAGATGGCTT+GGG - chr3_2:73455187-73455206 None:intergenic 40.0%
TGTTAGAGAAGAAGATGGCT+TGG - chr3_2:73455188-73455207 None:intergenic 40.0%
GGTTGTGTTAGAGAAGAAGA+TGG - chr3_2:73455193-73455212 None:intergenic 40.0%
GAAAAGGTGGGTGGTTTATT+AGG - chr3_2:73455243-73455262 None:intergenic 40.0%
TGTTTCATTGGTGGAATTGG+AGG - chr3_2:73455334-73455353 None:intergenic 40.0%
CGATGTTTCATTGGTGGAAT+TGG - chr3_2:73455337-73455356 None:intergenic 40.0%
AAGAGACGATGTTTCATTGG+TGG - chr3_2:73455343-73455362 None:intergenic 40.0%
TTAACTGGGATTGGAATCGT+TGG + chr3_2:73455361-73455380 Msa0423540:CDS 40.0%
AAGCTTTGCATCTCTTCTCA+AGG + chr3_2:73455416-73455435 Msa0423540:CDS 40.0%
AACACTTGAGCTCAATCACT+TGG - chr3_2:73455683-73455702 None:intergenic 40.0%
CCAAAAGATTCGTCCTTAAG+TGG - chr3_2:73455714-73455733 None:intergenic 40.0%
! CCACTTAAGGACGAATCTTT+TGG + chr3_2:73455711-73455730 Msa0423540:intron 40.0%
TTTACTTACACTTCCGACCA+AGG + chr3_2:73455785-73455804 Msa0423540:intron 40.0%
CACTCTCTCTCTCTCTTATT+TGG - chr3_2:73456054-73456073 None:intergenic 40.0%
TATAGTTGAAGCGACATCCA+AGG + chr3_2:73456311-73456330 Msa0423540:CDS 40.0%
TTATGCAGATACACTGGAAG+TGG + chr3_2:73456493-73456512 Msa0423540:CDS 40.0%
CACGGGATCTTAATTTCAGT+AGG - chr3_2:73456736-73456755 None:intergenic 40.0%
TTTCCCAACCAATTGTGTGT+GGG - chr3_2:73456867-73456886 None:intergenic 40.0%
! TTTTCCCAACCAATTGTGTG+TGG - chr3_2:73456868-73456887 None:intergenic 40.0%
TGTGAATAATGCAGTTTCCG+GGG + chr3_2:73456921-73456940 Msa0423540:intron 40.0%
AGGTCATCTGTTATATTCCC+CGG - chr3_2:73456941-73456960 None:intergenic 40.0%
AAACAGTTGTTGGGCATCAA+AGG - chr3_2:73457073-73457092 None:intergenic 40.0%
ATACTACAGACAGTTGCTCA+CGG + chr3_2:73457279-73457298 Msa0423540:intron 40.0%
TGACGACACATATCATATGC+AGG + chr3_2:73457348-73457367 Msa0423540:CDS 40.0%
AACAACAAGCATCATTTGGC+TGG - chr3_2:73457389-73457408 None:intergenic 40.0%
! CCCCATCTTTACTTGCTAAA+AGG + chr3_2:73457766-73457785 Msa0423540:CDS 40.0%
! GGCCTTTTAGCAAGTAAAGA+TGG - chr3_2:73457771-73457790 None:intergenic 40.0%
GAAGACAAATTCTCAACCTC+TGG - chr3_2:73457801-73457820 None:intergenic 40.0%
GAAAAACAGCAATGTTGAGG+CGG + chr3_2:73457869-73457888 Msa0423540:CDS 40.0%
TGATGGGGAAGATGATAATC+TGG + chr3_2:73458043-73458062 Msa0423540:CDS 40.0%
TAATCTGGATGAACCTGATG+AGG + chr3_2:73458058-73458077 Msa0423540:CDS 40.0%
TCCAGCGGAAATAAAGAACA+TGG + chr3_2:73458202-73458221 Msa0423540:CDS 40.0%
! TCCATGTTCTTTATTTCCGC+TGG - chr3_2:73458206-73458225 None:intergenic 40.0%
CTTTCCTCTTACACATACCT+AGG + chr3_2:73458234-73458253 Msa0423540:CDS 40.0%
TTCTCCTAGGTATGTGTAAG+AGG - chr3_2:73458241-73458260 None:intergenic 40.0%
GGAGAAATCTCGATAATGAC+AGG + chr3_2:73458255-73458274 Msa0423540:CDS 40.0%
TATGCCTTCTGATGTTGCTA+AGG + chr3_2:73458340-73458359 Msa0423540:CDS 40.0%
! TGATGTTGCTAAGGCCTTTT+GGG + chr3_2:73458349-73458368 Msa0423540:CDS 40.0%
GACTTTATCAGAACCCCAAA+AGG - chr3_2:73458366-73458385 None:intergenic 40.0%
ATGTTGTTGCACATCAAGAG+AGG + chr3_2:73458627-73458646 Msa0423540:intron 40.0%
!!! CAGCCCCATCAATTTTTAGT+TGG + chr3_2:73458953-73458972 Msa0423540:intron 40.0%
TGGCTATGTACATATCCATG+TGG + chr3_2:73458973-73458992 Msa0423540:intron 40.0%
TCATATTCTTGAGGTCTGTG+CGG + chr3_2:73459102-73459121 Msa0423540:intron 40.0%
TTGGATACCTAAGTCAAGTG+AGG - chr3_2:73459239-73459258 None:intergenic 40.0%
! GACAATTTCACGCATGCTTT+TGG - chr3_2:73459258-73459277 None:intergenic 40.0%
AAAGGATCAAAATCCCCTCT+GGG - chr3_2:73459353-73459372 None:intergenic 40.0%
TGGACTATTTCGATGCCATA+AGG - chr3_2:73459493-73459512 None:intergenic 40.0%
GTAGAGGCAGTAAAATTGAC+TGG + chr3_2:73459589-73459608 Msa0423540:CDS 40.0%
AGAGGCAGTAAAATTGACTG+GGG + chr3_2:73459591-73459610 Msa0423540:CDS 40.0%
! TTGAAAAGGCATAAACCACC+TGG - chr3_2:73459636-73459655 None:intergenic 40.0%
GTGACATTCCGTGCTAAAAT+TGG + chr3_2:73459752-73459771 Msa0423540:CDS 40.0%
ATTCATCAGGATACAGTCCA+CGG - chr3_2:73459799-73459818 None:intergenic 40.0%
TGGACTGTATCCTGATGAAT+TGG + chr3_2:73459799-73459818 Msa0423540:CDS 40.0%
GGACTGTATCCTGATGAATT+GGG + chr3_2:73459800-73459819 Msa0423540:CDS 40.0%
TTTACCACTCCCAATTCATC+AGG - chr3_2:73459812-73459831 None:intergenic 40.0%
TTTCCCTTACATCATCATGC+TGG + chr3_2:73459865-73459884 Msa0423540:intron 40.0%
AATAGTGCACACATAGGCAT+AGG - chr3_2:73459946-73459965 None:intergenic 40.0%
! CCGGAAAAAAGTGCACAAAT+AGG - chr3_2:73459973-73459992 None:intergenic 40.0%
GAATGCAAGTTATAAAGGCC+AGG + chr3_2:73460569-73460588 Msa0423540:intron 40.0%
ATGCAAGTTATAAAGGCCAG+GGG + chr3_2:73460571-73460590 Msa0423540:CDS 40.0%
!! CGAAATCCAAAATGGGTTGA+TGG + chr3_2:73460615-73460634 Msa0423540:CDS 40.0%
! AATTCCCCATCAACCCATTT+TGG - chr3_2:73460624-73460643 None:intergenic 40.0%
GGGGAATTGCTTCAACTTAA+TGG + chr3_2:73460636-73460655 Msa0423540:CDS 40.0%
GTGAGACCAAAAATCATGCT+TGG - chr3_2:73460706-73460725 None:intergenic 40.0%
AGCACAAGAAAACTTTGCTC+GGG - chr3_2:73460843-73460862 None:intergenic 40.0%
ATTTCTTTCTTCCCTGACGT+TGG + chr3_2:73460908-73460927 Msa0423540:three_prime_UTR 40.0%
TACTGACAAAATAGTGTGCC+AGG + chr3_2:73461116-73461135 Msa0423540:three_prime_UTR 40.0%
TAAGGTCTTTCTATAGCTCC+TGG - chr3_2:73461137-73461156 None:intergenic 40.0%
AGGAGCTATAGAAAGACCTT+AGG + chr3_2:73461136-73461155 Msa0423540:three_prime_UTR 40.0%
GGAGCTATAGAAAGACCTTA+GGG + chr3_2:73461137-73461156 Msa0423540:three_prime_UTR 40.0%
ATGCACATAAAGGATCCCTA+AGG - chr3_2:73461155-73461174 None:intergenic 40.0%
GGGATCCTTTATGTGCATTA+TGG + chr3_2:73461157-73461176 Msa0423540:three_prime_UTR 40.0%
!!! AGTAGGCATGTTAGTTTTCG+TGG + chr3_2:73461290-73461309 Msa0423540:three_prime_UTR 40.0%
! AGTTTTCGTGGTTTGAACTC+GGG + chr3_2:73461302-73461321 Msa0423540:three_prime_UTR 40.0%
!! TTAAATCACTTGAGTTGGCC+TGG + chr3_2:73461497-73461516 Msa0423540:three_prime_UTR 40.0%
ATTGTCCCCGATGTCAATTT+CGG + chr3_2:73461571-73461590 Msa0423540:three_prime_UTR 40.0%
AGCCAAACCGAAATTGACAT+CGG - chr3_2:73461581-73461600 None:intergenic 40.0%
!! CAATTTCGGTTTGGCTAGTT+TGG + chr3_2:73461585-73461604 Msa0423540:three_prime_UTR 40.0%
ATTGAAACGAGAAGGGGTTG+TGG - chr3_2:73455214-73455233 None:intergenic 45.0%
GTGGAGATTGAAACGAGAAG+GGG - chr3_2:73455220-73455239 None:intergenic 45.0%
GGTGGAGATTGAAACGAGAA+GGG - chr3_2:73455221-73455240 None:intergenic 45.0%
CATCGTCTCTTAACTGGGAT+TGG + chr3_2:73455352-73455371 Msa0423540:CDS 45.0%
GTGTTAACGAGCTCCACTTA+AGG + chr3_2:73455698-73455717 Msa0423540:intron 45.0%
CGAACCCAAGTTCGATTTCT+CGG + chr3_2:73455735-73455754 Msa0423540:intron 45.0%
TCCACCGAGAAATCGAACTT+GGG - chr3_2:73455742-73455761 None:intergenic 45.0%
TTCCACCGAGAAATCGAACT+TGG - chr3_2:73455743-73455762 None:intergenic 45.0%
GGTGGAAGTGGAATTATTCC+TGG + chr3_2:73455756-73455775 Msa0423540:intron 45.0%
! GGTCAGAGCAGATTTTGTCT+TGG + chr3_2:73456365-73456384 Msa0423540:intron 45.0%
AGTTCACACCCACACACAAT+TGG + chr3_2:73456856-73456875 Msa0423540:intron 45.0%
ACACCCACACACAATTGGTT+GGG + chr3_2:73456861-73456880 Msa0423540:intron 45.0%
! ACCTTTTTATGCAGGTGGGT+TGG + chr3_2:73457096-73457115 Msa0423540:intron 45.0%
ACCAACCCACCTGCATAAAA+AGG - chr3_2:73457100-73457119 None:intergenic 45.0%
!!! TTTTTATGCAGGTGGGTTGG+TGG + chr3_2:73457099-73457118 Msa0423540:intron 45.0%
!!! TTTTATGCAGGTGGGTTGGT+GGG + chr3_2:73457100-73457119 Msa0423540:intron 45.0%
TTGGCAAGAGTTACAGTCCA+AGG + chr3_2:73457195-73457214 Msa0423540:CDS 45.0%
TAGCAAGTAAAGATGGGGGA+AGG - chr3_2:73457764-73457783 None:intergenic 45.0%
TAAAAGGCCATCGAAACCAG+AGG + chr3_2:73457782-73457801 Msa0423540:CDS 45.0%
! TTCTCAACCTCTGGTTTCGA+TGG - chr3_2:73457792-73457811 None:intergenic 45.0%
AGAACCTGAAGACAAGGTTG+AGG + chr3_2:73457833-73457852 Msa0423540:CDS 45.0%
TGTTGAAGAGGAAGCAAGAG+AGG + chr3_2:73457974-73457993 Msa0423540:CDS 45.0%
GTTGAAGAGGAAGCAAGAGA+GGG + chr3_2:73457975-73457994 Msa0423540:CDS 45.0%
!! GATTCTAGAGTGACCTCATC+AGG - chr3_2:73458074-73458093 None:intergenic 45.0%
!! GAGGTCACTCTAGAATCTGA+CGG + chr3_2:73458077-73458096 Msa0423540:CDS 45.0%
TGATGCCTCGGATGAAGAAA+AGG + chr3_2:73458100-73458119 Msa0423540:CDS 45.0%
CAATATCAAAGTGGCAGCAC+TGG + chr3_2:73458295-73458314 Msa0423540:CDS 45.0%
AAGGCCTTAGCAACATCAGA+AGG - chr3_2:73458347-73458366 None:intergenic 45.0%
! CTGATGTTGCTAAGGCCTTT+TGG + chr3_2:73458348-73458367 Msa0423540:CDS 45.0%
! GATGTTGCTAAGGCCTTTTG+GGG + chr3_2:73458350-73458369 Msa0423540:CDS 45.0%
! TACTTGACACCCCCAGATTT+TGG - chr3_2:73458832-73458851 None:intergenic 45.0%
TGGGATATGTAGTTTCCGTC+TGG + chr3_2:73459147-73459166 Msa0423540:intron 45.0%
ACAGCTGAATACCACGCATT+GGG - chr3_2:73459173-73459192 None:intergenic 45.0%
CTAATGGCCTCACTTGACTT+AGG + chr3_2:73459229-73459248 Msa0423540:intron 45.0%
GAAAGGATCAAAATCCCCTC+TGG - chr3_2:73459354-73459373 None:intergenic 45.0%
!! GGGGATTTTGATCCTTTCGA+CGG + chr3_2:73459356-73459375 Msa0423540:CDS 45.0%
GCAGAGCAGAGCTTATAGAA+TGG + chr3_2:73459423-73459442 Msa0423540:intron 45.0%
GGACTCTATGTTGGTGCATT+TGG + chr3_2:73459466-73459485 Msa0423540:intron 45.0%
GTTGGTGCATTTGGACCTTA+TGG + chr3_2:73459475-73459494 Msa0423540:CDS 45.0%
CGATGCTCGAGAGATTGAAA+AGG - chr3_2:73459650-73459669 None:intergenic 45.0%
GTATCCTGATGAATTGGGAG+TGG + chr3_2:73459805-73459824 Msa0423540:CDS 45.0%
! GGTCCAGCATGATGATGTAA+GGG - chr3_2:73459871-73459890 None:intergenic 45.0%
! AGGTCCAGCATGATGATGTA+AGG - chr3_2:73459872-73459891 None:intergenic 45.0%
! TCTCTAACAATACCGACTGC+CGG - chr3_2:73460061-73460080 None:intergenic 45.0%
! TTCTGCTGTGTTTAGGGCAT+GGG + chr3_2:73460774-73460793 Msa0423540:intron 45.0%
AGATCTGCTCCTTTCATGTG+TGG - chr3_2:73460801-73460820 None:intergenic 45.0%
CACATGAAAGGAGCAGATCT+TGG + chr3_2:73460801-73460820 Msa0423540:CDS 45.0%
!! GAGGGTTTTGTAGCTTACTC+AGG - chr3_2:73460885-73460904 None:intergenic 45.0%
!! GATAGTTTTACTCGACACGC+AGG + chr3_2:73460995-73461014 Msa0423540:three_prime_UTR 45.0%
! CTGTGTGCCTTCTTGTTTGT+GGG + chr3_2:73461186-73461205 Msa0423540:three_prime_UTR 45.0%
TTGATGCAGGCAGAATACCT+GGG - chr3_2:73461216-73461235 None:intergenic 45.0%
TTTGATGCAGGCAGAATACC+TGG - chr3_2:73461217-73461236 None:intergenic 45.0%
AGGTATTCTGCCTGCATCAA+AGG + chr3_2:73461216-73461235 Msa0423540:three_prime_UTR 45.0%
CCAAACCGAAATTGACATCG+GGG - chr3_2:73461579-73461598 None:intergenic 45.0%
GCCAAACCGAAATTGACATC+GGG - chr3_2:73461580-73461599 None:intergenic 45.0%
!!! TTTAATTTATTTTTTCTAAT+AGG + chr3_2:73455591-73455610 Msa0423540:intron 5.0%
!!! TTAATTTATTTTTTCTAATA+GGG + chr3_2:73455592-73455611 Msa0423540:intron 5.0%
!!! TAAAATGTATTTTTTTTTTT+TGG + chr3_2:73460394-73460413 Msa0423540:intron 5.0%
!!! ATTAAAGTTTTATTTTTTAT+AGG + chr3_2:73461251-73461270 Msa0423540:three_prime_UTR 5.0%
!! ACTATATATATTTATATATA+GGG - chr3_2:73461678-73461697 None:intergenic 5.0%
!! TACTATATATATTTATATAT+AGG - chr3_2:73461679-73461698 None:intergenic 5.0%
GGGTGGAGATTGAAACGAGA+AGG - chr3_2:73455222-73455241 None:intergenic 50.0%
AGGTGGGTGGTTTATTAGGG+TGG - chr3_2:73455239-73455258 None:intergenic 50.0%
AGGTGCATCGTAGAAAGTGG+GGG - chr3_2:73455314-73455333 None:intergenic 50.0%
GAGGTGCATCGTAGAAAGTG+GGG - chr3_2:73455315-73455334 None:intergenic 50.0%
! GGAGGTGCATCGTAGAAAGT+GGG - chr3_2:73455316-73455335 None:intergenic 50.0%
! TGGAGGTGCATCGTAGAAAG+TGG - chr3_2:73455317-73455336 None:intergenic 50.0%
ACCCAAGTTCGATTTCTCGG+TGG + chr3_2:73455738-73455757 Msa0423540:intron 50.0%
GTTCGATTTCTCGGTGGAAG+TGG + chr3_2:73455744-73455763 Msa0423540:intron 50.0%
TTACACTTCCGACCAAGGTC+CGG + chr3_2:73455790-73455809 Msa0423540:intron 50.0%
CTAGTAATCCGGACCTTGGT+CGG - chr3_2:73455801-73455820 None:intergenic 50.0%
TGTTAACCCTCCGGTTCCTA+GGG - chr3_2:73455833-73455852 None:intergenic 50.0%
TTGTTAACCCTCCGGTTCCT+AGG - chr3_2:73455834-73455853 None:intergenic 50.0%
! ATGGTAGCGCTCATCGTCTA+TGG - chr3_2:73456461-73456480 None:intergenic 50.0%
CAGATACACTGGAAGTGGAC+TGG + chr3_2:73456498-73456517 Msa0423540:CDS 50.0%
CACACCCACACACAATTGGT+TGG + chr3_2:73456860-73456879 Msa0423540:intron 50.0%
GTATTAGTCCTGGTATGGGC+AGG + chr3_2:73457168-73457187 Msa0423540:CDS 50.0%
TTGGCTCCCCAATCACTTGA+AGG - chr3_2:73457246-73457265 None:intergenic 50.0%
AGTTGCTCACGGCATCTACT+GGG + chr3_2:73457290-73457309 Msa0423540:CDS 50.0%
GTGTATTTGCGACGAGCCAA+AGG + chr3_2:73457723-73457742 Msa0423540:CDS 50.0%
GGTGCAAGAACCTGAAGACA+AGG + chr3_2:73457827-73457846 Msa0423540:CDS 50.0%
CTCTCCTCAACCTTGTCTTC+AGG - chr3_2:73457840-73457859 None:intergenic 50.0%
AGAATCTGACGGTGATGCCT+CGG + chr3_2:73458088-73458107 Msa0423540:CDS 50.0%
!! ATCTGGGGGTGTCAAGTAAG+TGG + chr3_2:73458834-73458853 Msa0423540:intron 50.0%
GACAGCTGAATACCACGCAT+TGG - chr3_2:73459174-73459193 None:intergenic 50.0%
TGATCCTTTCGACGGTGAGT+TGG + chr3_2:73459364-73459383 Msa0423540:intron 50.0%
TAAGCCAACTCACCGTCGAA+AGG - chr3_2:73459371-73459390 None:intergenic 50.0%
GGGGATCTTAATGTTCCTGC+AGG + chr3_2:73459610-73459629 Msa0423540:CDS 50.0%
TCTTAATGTTCCTGCAGGCC+AGG + chr3_2:73459615-73459634 Msa0423540:CDS 50.0%
ATCAGGATACAGTCCACGGT+TGG - chr3_2:73459795-73459814 None:intergenic 50.0%
AAAGCTATTCCACCGGCAGT+CGG + chr3_2:73460046-73460065 Msa0423540:intron 50.0%
CAAAGTCTGCTATTCTCCCC+TGG - chr3_2:73460590-73460609 None:intergenic 50.0%
CAGGGGAGAATAGCAGACTT+TGG + chr3_2:73460588-73460607 Msa0423540:CDS 50.0%
! GTTCTGCTGTGTTTAGGGCA+TGG + chr3_2:73460773-73460792 Msa0423540:intron 50.0%
TTTGCTCGGGCACAGCATAA+AGG - chr3_2:73460830-73460849 None:intergenic 50.0%
TCTTTCTTCCCTGACGTTGG+TGG + chr3_2:73460911-73460930 Msa0423540:three_prime_UTR 50.0%
CTTTCTTCCCTGACGTTGGT+GGG + chr3_2:73460912-73460931 Msa0423540:three_prime_UTR 50.0%
!! GTTGGTGGGTTGGAGTATGA+AGG + chr3_2:73460926-73460945 Msa0423540:three_prime_UTR 50.0%
! GCTGTGTGCCTTCTTGTTTG+TGG + chr3_2:73461185-73461204 Msa0423540:three_prime_UTR 50.0%
GGGACTTCCCACAAACAAGA+AGG - chr3_2:73461196-73461215 None:intergenic 50.0%
! TCTTGTTTGTGGGAAGTCCC+AGG + chr3_2:73461196-73461215 Msa0423540:three_prime_UTR 50.0%
! TAGCTCGGTTGGTGCATTGA+GGG - chr3_2:73461353-73461372 None:intergenic 50.0%
! ATAGCTCGGTTGGTGCATTG+AGG - chr3_2:73461354-73461373 None:intergenic 50.0%
CTAGTCTCGCGTAGATAGCT+CGG - chr3_2:73461368-73461387 None:intergenic 50.0%
!! AATCACTTGAGTTGGCCTGG+TGG + chr3_2:73461500-73461519 Msa0423540:three_prime_UTR 50.0%
!! GTGGTGTTGGCTTAAGACCT+TGG + chr3_2:73461519-73461538 Msa0423540:three_prime_UTR 50.0%
CTTGAGAGGAGCAAACTCCA+AGG - chr3_2:73461539-73461558 None:intergenic 50.0%
CCCCGATGTCAATTTCGGTT+TGG + chr3_2:73461576-73461595 Msa0423540:three_prime_UTR 50.0%
ATCGTAGAAAGTGGGGGGTG+CGG - chr3_2:73455308-73455327 None:intergenic 55.0%
GGTGCATCGTAGAAAGTGGG+GGG - chr3_2:73455313-73455332 None:intergenic 55.0%
CGACCAAGGTCCGGATTACT+AGG + chr3_2:73455799-73455818 Msa0423540:intron 55.0%
GTTAACCCTCCGGTTCCTAG+GGG - chr3_2:73455832-73455851 None:intergenic 55.0%
CAGTTGCTCACGGCATCTAC+TGG + chr3_2:73457289-73457308 Msa0423540:CDS 55.0%
CAATGTTGAGGCGGCAACTG+AGG + chr3_2:73457878-73457897 Msa0423540:CDS 55.0%
ATACCACGCATTGGGCCAGA+CGG - chr3_2:73459165-73459184 None:intergenic 55.0%
AACCGGATTGCAAGTCCCAG+AGG + chr3_2:73459335-73459354 Msa0423540:CDS 55.0%
ACCGGATTGCAAGTCCCAGA+GGG + chr3_2:73459336-73459355 Msa0423540:CDS 55.0%
TAATGTTCCTGCAGGCCAGG+TGG + chr3_2:73459618-73459637 Msa0423540:intron 55.0%
! CTAACAATACCGACTGCCGG+TGG - chr3_2:73460058-73460077 None:intergenic 55.0%
GGCATGGGACCACACATGAA+AGG + chr3_2:73460789-73460808 Msa0423540:CDS 55.0%
ACTCCAACCCACCAACGTCA+GGG - chr3_2:73460922-73460941 None:intergenic 55.0%
TACTCCAACCCACCAACGTC+AGG - chr3_2:73460923-73460942 None:intergenic 55.0%
CTAGCGGCTTCCTTTGATGC+AGG - chr3_2:73461229-73461248 None:intergenic 55.0%
TCTCGCGTAGATAGCTCGGT+TGG - chr3_2:73461364-73461383 None:intergenic 55.0%
!! TTGAGTTGGCCTGGTGGTGT+TGG + chr3_2:73461506-73461525 Msa0423540:three_prime_UTR 55.0%
GGTCTTAAGCCAACACCACC+AGG - chr3_2:73461518-73461537 None:intergenic 55.0%
GGGCCTAGTAATCCGGACCT+TGG - chr3_2:73455805-73455824 None:intergenic 60.0%
GGGAGAGGGGCCTAGTAATC+CGG - chr3_2:73455812-73455831 None:intergenic 60.0%
TTACTAGGCCCCTCTCCCCT+AGG + chr3_2:73455814-73455833 Msa0423540:intron 60.0%
!! ATGCAGGTGGGTTGGTGGGT+AGG + chr3_2:73457104-73457123 Msa0423540:intron 60.0%
!! TGCAGGTGGGTTGGTGGGTA+GGG + chr3_2:73457105-73457124 Msa0423540:intron 60.0%
CCAACGAACCTGCCCATACC+AGG - chr3_2:73457179-73457198 None:intergenic 60.0%
CCTGGTATGGGCAGGTTCGT+TGG + chr3_2:73457176-73457195 Msa0423540:CDS 60.0%
GTTGAGGCGGCAACTGAGGA+TGG + chr3_2:73457882-73457901 Msa0423540:CDS 60.0%
TTTCCGTCTGGCCCAATGCG+TGG + chr3_2:73459159-73459178 Msa0423540:intron 60.0%
!! CCCCTCTGGGACTTGCAATC+CGG - chr3_2:73459340-73459359 None:intergenic 60.0%
CCGGATTGCAAGTCCCAGAG+GGG + chr3_2:73459337-73459356 Msa0423540:CDS 60.0%
GCATAAACCACCTGGCCTGC+AGG - chr3_2:73459628-73459647 None:intergenic 60.0%
ACAGTCCACGGTTGGCGTTG+CGG - chr3_2:73459787-73459806 None:intergenic 60.0%
! CTTCCCTGACGTTGGTGGGT+TGG + chr3_2:73460916-73460935 Msa0423540:three_prime_UTR 60.0%
CTCCGGTTCCTAGGGGAGAG+GGG - chr3_2:73455825-73455844 None:intergenic 65.0%
CCTCCGGTTCCTAGGGGAGA+GGG - chr3_2:73455826-73455845 None:intergenic 65.0%
CCTCTCCCCTAGGAACCGGA+GGG + chr3_2:73455824-73455843 Msa0423540:intron 65.0%
!! GTGGCAGCACTGGCAGCACA+AGG + chr3_2:73458305-73458324 Msa0423540:CDS 65.0%
GTCAACCGCAACGCCAACCG+TGG + chr3_2:73459779-73459798 Msa0423540:CDS 65.0%
GGCCCCTCTCCCCTAGGAAC+CGG + chr3_2:73455820-73455839 Msa0423540:intron 70.0%
CCCTCTCCCCTAGGAACCGG+AGG + chr3_2:73455823-73455842 Msa0423540:intron 70.0%
CCCTCCGGTTCCTAGGGGAG+AGG - chr3_2:73455827-73455846 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 73455132 73461771 73455132 ID=Msa0423540;Name=Msa0423540
chr3_2 mRNA 73455132 73461771 73455132 ID=Msa0423540-mRNA-1;Parent=Msa0423540;Name=Msa0423540-mRNA-1;_AED=0.06;_eAED=0.06;_QI=27|1|1|1|1|1|11|881|630
chr3_2 exon 73455132 73455437 73455132 ID=Msa0423540-mRNA-1:exon:18290;Parent=Msa0423540-mRNA-1
chr3_2 exon 73456249 73456365 73456249 ID=Msa0423540-mRNA-1:exon:18291;Parent=Msa0423540-mRNA-1
chr3_2 exon 73456454 73456519 73456454 ID=Msa0423540-mRNA-1:exon:18292;Parent=Msa0423540-mRNA-1
chr3_2 exon 73457110 73457216 73457110 ID=Msa0423540-mRNA-1:exon:18293;Parent=Msa0423540-mRNA-1
chr3_2 exon 73457288 73457369 73457288 ID=Msa0423540-mRNA-1:exon:18294;Parent=Msa0423540-mRNA-1
chr3_2 exon 73457720 73458394 73457720 ID=Msa0423540-mRNA-1:exon:18295;Parent=Msa0423540-mRNA-1
chr3_2 exon 73459251 73459377 73459251 ID=Msa0423540-mRNA-1:exon:18296;Parent=Msa0423540-mRNA-1
chr3_2 exon 73459467 73459636 73459467 ID=Msa0423540-mRNA-1:exon:18297;Parent=Msa0423540-mRNA-1
chr3_2 exon 73459752 73459826 73459752 ID=Msa0423540-mRNA-1:exon:18298;Parent=Msa0423540-mRNA-1
chr3_2 exon 73460570 73460662 73460570 ID=Msa0423540-mRNA-1:exon:18299;Parent=Msa0423540-mRNA-1
chr3_2 exon 73460789 73461771 73460789 ID=Msa0423540-mRNA-1:exon:18300;Parent=Msa0423540-mRNA-1
chr3_2 five_prime_UTR 73455132 73455158 73455132 ID=Msa0423540-mRNA-1:five_prime_utr;Parent=Msa0423540-mRNA-1
chr3_2 CDS 73455159 73455437 73455159 ID=Msa0423540-mRNA-1:cds;Parent=Msa0423540-mRNA-1
chr3_2 CDS 73456249 73456365 73456249 ID=Msa0423540-mRNA-1:cds;Parent=Msa0423540-mRNA-1
chr3_2 CDS 73456454 73456519 73456454 ID=Msa0423540-mRNA-1:cds;Parent=Msa0423540-mRNA-1
chr3_2 CDS 73457110 73457216 73457110 ID=Msa0423540-mRNA-1:cds;Parent=Msa0423540-mRNA-1
chr3_2 CDS 73457288 73457369 73457288 ID=Msa0423540-mRNA-1:cds;Parent=Msa0423540-mRNA-1
chr3_2 CDS 73457720 73458394 73457720 ID=Msa0423540-mRNA-1:cds;Parent=Msa0423540-mRNA-1
chr3_2 CDS 73459251 73459377 73459251 ID=Msa0423540-mRNA-1:cds;Parent=Msa0423540-mRNA-1
chr3_2 CDS 73459467 73459636 73459467 ID=Msa0423540-mRNA-1:cds;Parent=Msa0423540-mRNA-1
chr3_2 CDS 73459752 73459826 73459752 ID=Msa0423540-mRNA-1:cds;Parent=Msa0423540-mRNA-1
chr3_2 CDS 73460570 73460662 73460570 ID=Msa0423540-mRNA-1:cds;Parent=Msa0423540-mRNA-1
chr3_2 CDS 73460789 73460890 73460789 ID=Msa0423540-mRNA-1:cds;Parent=Msa0423540-mRNA-1
chr3_2 three_prime_UTR 73460891 73461771 73460891 ID=Msa0423540-mRNA-1:three_prime_utr;Parent=Msa0423540-mRNA-1
Gene Sequence

>Msa0423540

ATGGTGATGGCTTCATTGGGCGTGTCCCAAGCCATCTTCTTCTCTAACACAACCACAACCCCTTCTCGTTTCAATCTCCACCCTAATAAACCACCCACCTTTTCTTTTCAAAACAACCCTTCAATCTCAATCTTTTCAAGAAGGAACCGCACCCCCCACTTTCTACGATGCACCTCCAATTCCACCAATGAAACATCGTCTCTTAACTGGGATTGGAATCGTTGGTGTCGCCATTTCGATGATATTGAACAGGCTGAAAGCTTTGCATCTCTTCTCAAGTTTCAACTTGAAGATGCTATTGAGAAGGAAGAGTTTCAAGAAGCAGCAAAGCTAAAAAGGGCTATAGTTGAAGCGACATCCAAGGATAGTGTTGCTGAAATTATGTCTCAGTTGAAGAATGCCATAGACGATGAGCGCTACCATGATGCTTCAAAATTATGCAGATACACTGGAAGTGGACTGGTGGGTTGGTGGGTAGGGTACTCAAAAAATTCAGAGGACCCTTTTGGTAGAATAATACGTATTAGTCCTGGTATGGGCAGGTTCGTTGGCAAGAGTTACAGTCCAAGACAGTTGCTCACGGCATCTACTGGGACGCCATTATTTGAAATTTATGTGGTGAAAAATGCTGACGACACATATCATATGCAGGTAGTGTATTTGCGACGAGCCAAAGGAAATTCAACGAGTAACCTTCCCCCATCTTTACTTGCTAAAAGGCCATCGAAACCAGAGGTTGAGAATTTGTCTTCAGTTGAGGTGCAAGAACCTGAAGACAAGGTTGAGGAGAGAAACGATGAGAAAAACAGCAATGTTGAGGCGGCAACTGAGGATGGCATTAAAAGTGTCATAAATTTTCTTAAAGAAAAAATTCCAGGGTTGAAAGTCAAAGTTATGAACATTAATGTTGAAGAGGAAGCAAGAGAGGGTAGTGATTCTATTAAACAAATCATGGAGGAAGATGGTAATAAAACTGATGGGGAAGATGATAATCTGGATGAACCTGATGAGGTCACTCTAGAATCTGACGGTGATGCCTCGGATGAAGAAAAGGATTTAGATATGAAGCTCTTTATTGGCGGAATTGTACACAACAATGAAGATAATTCTTCTAAGGATGAATTTATACGTCTTCCAGCGGAAATAAAGAACATGGAAAGGGAATCTTTCCTCTTACACATACCTAGGAGAAATCTCGATAATGACAGGAAAGAAGATAAAGTTCGCAATATCAAAGTGGCAGCACTGGCAGCACAAGGAATCTCAGAGCTTATGCCTTCTGATGTTGCTAAGGCCTTTTGGGGTTCTGATAAAGTCTCTTCTAAGGTATCCAAAAGCATGCGTGAAATTGTCAAACTTGCTATCAGCCAAGCACAGAAAAAAAGTAGATTATCCGAAGATACATATTTTAACCGGATTGCAAGTCCCAGAGGGGATTTTGATCCTTTCGACGGACTCTATGTTGGTGCATTTGGACCTTATGGCATCGAAATAGTCCAATTGAGACGAAAATTTGGACATTGGAATGATGTGGACAGTGAAAACAGCACTTCAGATATCGAGTTTTTTGAATATGTAGAGGCAGTAAAATTGACTGGGGATCTTAATGTTCCTGCAGGCCAGGTGACATTCCGTGCTAAAATTGGTAAAGTCAACCGCAACGCCAACCGTGGACTGTATCCTGATGAATTGGGAGTGAATGCAAGTTATAAAGGCCAGGGGAGAATAGCAGACTTTGGTTTTCGAAATCCAAAATGGGTTGATGGGGAATTGCTTCAACTTAATGGCAAGGGCATGGGACCACACATGAAAGGAGCAGATCTTGGTTTCCTTTATGCTGTGCCCGAGCAAAGTTTTCTTGTGCTATTCAACCGATTGAAACTACCTGAGTAA
Protein sequence

>Msa0423540

MVMASLGVSQAIFFSNTTTTPSRFNLHPNKPPTFSFQNNPSISIFSRRNRTPHFLRCTSNSTNETSSLNWDWNRWCRHFDDIEQAESFASLLKFQLEDAIEKEEFQEAAKLKRAIVEATSKDSVAEIMSQLKNAIDDERYHDASKLCRYTGSGLVGWWVGYSKNSEDPFGRIIRISPGMGRFVGKSYSPRQLLTASTGTPLFEIYVVKNADDTYHMQVVYLRRAKGNSTSNLPPSLLAKRPSKPEVENLSSVEVQEPEDKVEERNDEKNSNVEAATEDGIKSVINFLKEKIPGLKVKVMNINVEEEAREGSDSIKQIMEEDGNKTDGEDDNLDEPDEVTLESDGDASDEEKDLDMKLFIGGIVHNNEDNSSKDEFIRLPAEIKNMERESFLLHIPRRNLDNDRKEDKVRNIKVAALAAQGISELMPSDVAKAFWGSDKVSSKVSKSMREIVKLAISQAQKKSRLSEDTYFNRIASPRGDFDPFDGLYVGAFGPYGIEIVQLRRKFGHWNDVDSENSTSDIEFFEYVEAVKLTGDLNVPAGQVTFRAKIGKVNRNANRGLYPDELGVNASYKGQGRIADFGFRNPKWVDGELLQLNGKGMGPHMKGADLGFLYAVPEQSFLVLFNRLKLPE*