AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0425990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0425990 MtrunA17_Chr3g0128111 93.564 202 13 0 40 241 45 246 2.66e-142 398
Msa0425990 MtrunA17_Chr3g0128151 83.562 219 29 1 29 240 14 232 2.26e-130 380
Msa0425990 MtrunA17_Chr5g0428991 69.545 220 60 1 28 240 16 235 9.15e-111 331
Msa0425990 MtrunA17_Chr3g0109821 52.308 195 88 3 36 227 5 197 1.55e-60 201
Msa0425990 MtrunA17_Chr5g0433781 52.850 193 83 3 36 228 5 189 1.95e-60 201
Msa0425990 MtrunA17_Chr6g0481091 46.296 216 100 2 37 240 6 217 2.37e-59 187
Msa0425990 MtrunA17_Chr2g0309891 47.739 199 84 5 36 228 5 189 1.63e-57 186
Msa0425990 MtrunA17_Chr5g0400461 47.264 201 87 5 36 224 5 198 1.37e-53 176
Msa0425990 MtrunA17_Chr5g0398971 50.318 157 75 3 33 187 3 158 1.37e-53 176
Msa0425990 MtrunA17_Chr4g0018391 52.500 160 71 4 29 187 1 156 5.29e-53 174
Msa0425990 MtrunA17_Chr4g0056541 47.929 169 83 3 29 196 1 165 2.26e-52 173
Msa0425990 MtrunA17_Chr8g0345691 53.548 155 63 4 33 184 8 156 2.77e-51 172
Msa0425990 MtrunA17_Chr8g0345671 56.291 151 57 5 37 184 11 155 1.08e-50 170
Msa0425990 MtrunA17_Chr4g0054791 51.829 164 74 3 36 195 5 167 2.66e-50 166
Msa0425990 MtrunA17_Chr5g0405211 46.667 180 92 3 35 212 6 183 6.68e-50 166
Msa0425990 MtrunA17_Chr8g0372121 47.403 154 78 2 35 187 4 155 8.60e-50 165
Msa0425990 MtrunA17_Chr3g0092671 53.503 157 70 3 33 188 2 156 9.86e-50 170
Msa0425990 MtrunA17_Chr1g0197351 51.875 160 71 1 36 189 41 200 2.47e-49 168
Msa0425990 MtrunA17_Chr1g0201021 51.613 155 74 1 34 188 17 170 1.02e-48 168
Msa0425990 MtrunA17_Chr1g0197361 54.000 150 67 2 40 188 11 159 2.08e-48 167
Msa0425990 MtrunA17_Chr1g0200561 49.342 152 74 2 37 187 19 168 3.51e-48 162
Msa0425990 MtrunA17_Chr3g0130101 48.649 148 76 0 40 187 10 157 4.26e-48 162
Msa0425990 MtrunA17_Chr4g0017921 47.531 162 79 3 30 189 1 158 4.66e-48 162
Msa0425990 MtrunA17_Chr8g0364791 48.649 148 76 0 40 187 9 156 4.68e-48 164
Msa0425990 MtrunA17_Chr2g0309331 47.436 156 78 3 36 189 9 162 2.17e-47 160
Msa0425990 MtrunA17_Chr3g0091921 43.868 212 96 5 37 229 16 223 2.65e-47 158
Msa0425990 MtrunA17_Chr6g0484441 49.673 153 73 2 36 188 4 152 5.93e-47 158
Msa0425990 MtrunA17_Chr7g0217711 58.065 124 50 1 40 163 22 143 6.29e-47 154
Msa0425990 MtrunA17_Chr2g0318081 48.734 158 75 3 36 191 15 168 9.64e-47 158
Msa0425990 MtrunA17_Chr4g0060931 51.299 154 71 2 37 188 17 168 1.40e-46 158
Msa0425990 MtrunA17_Chr3g0139331 53.247 154 66 3 36 187 10 159 3.34e-46 157
Msa0425990 MtrunA17_Chr7g0217721 40.553 217 111 3 40 240 22 236 1.11e-45 155
Msa0425990 MtrunA17_Chr6g0453451 49.091 165 73 3 37 199 20 175 3.60e-45 153
Msa0425990 MtrunA17_Chr4g0042561 46.061 165 79 3 29 187 1 161 3.76e-45 152
Msa0425990 MtrunA17_Chr2g0321741 49.306 144 60 3 58 196 13 148 1.23e-44 153
Msa0425990 MtrunA17_Chr8g0384201 45.270 148 81 0 40 187 9 156 2.85e-44 155
Msa0425990 MtrunA17_Chr8g0359921 48.428 159 76 3 36 191 13 168 3.45e-44 151
Msa0425990 MtrunA17_Chr8g0361731 43.636 165 80 4 40 193 17 179 4.57e-44 152
Msa0425990 MtrunA17_Chr7g0252971 40.777 206 96 5 37 222 8 207 6.53e-44 150
Msa0425990 MtrunA17_Chr2g0316971 48.765 162 67 4 37 189 23 177 6.54e-44 152
Msa0425990 MtrunA17_Chr8g0346001 42.458 179 92 3 37 204 15 193 6.98e-44 153
Msa0425990 MtrunA17_Chr1g0147421 50.000 156 71 4 36 188 26 177 1.64e-43 150
Msa0425990 MtrunA17_Chr5g0417791 46.061 165 81 3 37 195 3 165 1.65e-43 147
Msa0425990 MtrunA17_Chr7g0214071 47.712 153 71 3 37 187 15 160 2.43e-43 147
Msa0425990 MtrunA17_Chr8g0345711 50.340 147 67 4 31 172 4 149 6.17e-43 143
Msa0425990 MtrunA17_Chr3g0124761 46.154 156 74 4 37 187 7 157 9.38e-43 146
Msa0425990 MtrunA17_Chr8g0385991 42.697 178 87 4 25 193 2 173 1.10e-42 144
Msa0425990 MtrunA17_Chr5g0417001 42.073 164 83 4 40 193 17 178 1.77e-42 148
Msa0425990 MtrunA17_Chr3g0130731 46.497 157 72 5 37 187 7 157 1.79e-42 145
Msa0425990 MtrunA17_Chr2g0318101 42.515 167 81 3 36 189 14 178 3.67e-42 146
Msa0425990 MtrunA17_Chr4g0076731 46.309 149 75 3 40 187 57 201 3.99e-42 148
Msa0425990 MtrunA17_Chr8g0384721 45.860 157 74 4 37 187 7 158 4.52e-42 144
Msa0425990 MtrunA17_Chr8g0345731 50.758 132 60 3 37 163 24 155 1.34e-41 140
Msa0425990 MtrunA17_Chr7g0263931 39.583 192 97 4 37 211 11 200 5.99e-41 142
Msa0425990 MtrunA17_Chr6g0461661 45.223 157 80 3 37 189 18 172 8.36e-41 143
Msa0425990 MtrunA17_Chr2g0312321 41.969 193 89 7 37 215 11 194 9.94e-41 141
Msa0425990 MtrunA17_Chr1g0183741 46.104 154 75 3 36 187 9 156 1.92e-40 140
Msa0425990 MtrunA17_Chr4g0047841 41.667 180 78 4 37 191 15 192 2.12e-40 141
Msa0425990 MtrunA17_Chr7g0253011 48.101 158 74 3 37 188 17 172 3.34e-40 142
Msa0425990 MtrunA17_Chr6g0453131 42.236 161 81 3 40 190 18 176 5.62e-40 141
Msa0425990 MtrunA17_Chr3g0144271 53.077 130 56 3 37 163 23 150 2.13e-39 140
Msa0425990 MtrunA17_Chr2g0326361 41.209 182 88 5 36 207 13 185 9.12e-39 137
Msa0425990 MtrunA17_Chr7g0261411 46.053 152 74 3 36 185 9 154 4.25e-38 134
Msa0425990 MtrunA17_Chr4g0038751 44.516 155 75 4 36 187 15 161 2.60e-37 132
Msa0425990 MtrunA17_Chr3g0131911 40.449 178 92 3 26 193 3 176 4.37e-37 130
Msa0425990 MtrunA17_Chr8g0345701 48.276 145 55 6 36 163 6 147 3.92e-36 125
Msa0425990 MtrunA17_Chr3g0113001 43.312 157 78 3 84 229 4 160 7.36e-35 126
Msa0425990 MtrunA17_Chr8g0345741 42.763 152 78 4 48 196 2 147 1.68e-34 121
Msa0425990 MtrunA17_Chr5g0442771 42.500 160 78 5 40 187 21 178 2.70e-34 125
Msa0425990 MtrunA17_Chr2g0321631 40.385 156 85 5 38 185 5 160 9.23e-34 122
Msa0425990 MtrunA17_Chr4g0026141 40.127 157 85 5 37 185 5 160 1.47e-33 122
Msa0425990 MtrunA17_Chr2g0311651 41.071 168 82 5 37 188 21 187 2.32e-33 122
Msa0425990 MtrunA17_Chr2g0311661 40.000 170 85 5 35 188 18 186 7.68e-33 120
Msa0425990 MtrunA17_Chr8g0345721 40.127 157 61 4 39 163 37 192 7.89e-31 113
Msa0425990 MtrunA17_Chr7g0266701 35.758 165 96 5 34 188 1 165 9.76e-31 114
Msa0425990 MtrunA17_Chr3g0113031 53.922 102 36 3 102 199 3 97 2.59e-28 108
Msa0425990 MtrunA17_Chr4g0050701 31.481 162 93 4 37 190 11 162 7.35e-23 92.0
Msa0425990 MtrunA17_Chr7g0243371 46.835 79 40 1 87 163 12 90 2.31e-19 80.9
Msa0425990 MtrunA17_Chr7g0251651 33.071 127 81 3 37 162 18 141 5.90e-15 70.9
Msa0425990 MtrunA17_Chr7g0251661 32.283 127 82 3 37 162 10 133 2.50e-14 68.6
Msa0425990 MtrunA17_Chr3g0130321 30.247 162 93 4 37 186 7 160 2.70e-14 69.3
Msa0425990 MtrunA17_Chr8g0384351 30.464 151 83 6 37 187 10 138 3.33e-14 68.9
Msa0425990 MtrunA17_Chr3g0128121 64.000 50 10 1 1 50 1 42 6.84e-13 61.6
Msa0425990 MtrunA17_Chr2g0282871 29.605 152 86 6 34 168 50 197 1.61e-12 65.9
Msa0425990 MtrunA17_Chr3g0113011 53.191 47 22 0 37 83 19 65 5.87e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0425990 AT4G35580.1 62.376 202 73 1 29 227 1 202 1.71e-85 263
Msa0425990 AT4G35580.3 62.376 202 73 1 29 227 1 202 2.57e-85 263
Msa0425990 AT4G35580.2 62.376 202 73 1 29 227 1 202 2.64e-85 263
Msa0425990 AT1G33060.2 64.948 194 62 2 20 207 1 194 5.79e-85 266
Msa0425990 AT1G33060.1 64.948 194 62 2 20 207 1 194 6.03e-85 265
Msa0425990 AT5G24590.2 57.820 211 78 4 26 235 2 202 1.31e-79 246
Msa0425990 AT3G49530.2 58.376 197 76 2 31 226 7 198 4.51e-79 243
Msa0425990 AT3G49530.1 58.376 197 76 2 31 226 7 198 6.47e-79 245
Msa0425990 AT1G65910.1 54.438 169 77 0 36 204 5 173 1.34e-60 201
Msa0425990 AT3G17730.1 52.514 179 80 1 37 210 6 184 4.93e-60 189
Msa0425990 AT5G17260.1 59.477 153 61 1 36 187 5 157 1.18e-57 190
Msa0425990 AT3G03200.1 58.824 153 62 1 36 187 5 157 1.65e-56 187
Msa0425990 AT3G10490.1 54.487 156 70 1 35 189 25 180 2.12e-55 177
Msa0425990 AT3G10480.2 53.125 160 75 0 30 189 20 179 1.42e-54 181
Msa0425990 AT1G54330.1 54.902 153 66 1 36 188 5 154 1.56e-54 177
Msa0425990 AT3G10480.1 53.988 163 70 2 30 189 20 180 1.97e-54 181
Msa0425990 AT3G10490.2 54.839 155 69 1 36 189 26 180 4.97e-54 180
Msa0425990 AT3G10500.1 54.487 156 71 0 33 188 5 160 8.45e-54 182
Msa0425990 AT1G12260.2 51.923 156 72 3 33 187 3 156 6.67e-53 174
Msa0425990 AT4G17980.1 43.590 234 102 7 35 240 4 235 8.12e-53 172
Msa0425990 AT1G12260.1 51.923 156 72 3 33 187 3 156 1.58e-52 175
Msa0425990 AT5G04410.1 52.564 156 74 0 33 188 5 160 2.77e-52 178
Msa0425990 AT1G62700.1 51.282 156 73 3 33 187 3 156 3.26e-52 174
Msa0425990 AT1G62700.2 51.282 156 73 3 33 187 3 156 3.26e-52 174
Msa0425990 AT4G17980.2 43.590 234 102 7 35 240 4 235 3.57e-52 171
Msa0425990 AT5G46590.1 54.777 157 65 3 37 189 6 160 9.52e-52 170
Msa0425990 AT5G62380.2 47.879 165 83 2 33 196 3 165 3.06e-51 170
Msa0425990 AT5G62380.1 47.879 165 83 2 33 196 3 165 3.06e-51 170
Msa0425990 AT2G27300.1 50.625 160 71 3 30 189 7 158 3.55e-51 170
Msa0425990 AT2G18060.3 50.980 153 72 2 36 187 8 158 1.18e-50 169
Msa0425990 AT2G18060.1 50.980 153 72 2 36 187 8 158 1.18e-50 169
Msa0425990 AT4G10350.1 47.531 162 84 1 29 189 1 162 5.70e-50 167
Msa0425990 AT3G44290.2 51.656 151 64 3 40 190 17 158 6.09e-50 163
Msa0425990 AT5G66300.1 49.673 153 75 2 36 187 11 162 1.63e-49 164
Msa0425990 AT4G36160.1 49.020 153 75 2 36 187 9 159 3.04e-49 166
Msa0425990 AT4G36160.3 49.020 153 75 2 36 187 9 159 3.04e-49 166
Msa0425990 AT4G36160.2 49.020 153 75 2 36 187 13 163 3.75e-49 166
Msa0425990 AT5G22290.1 50.993 151 66 3 40 190 24 166 5.67e-49 164
Msa0425990 AT1G33280.1 50.000 154 73 2 37 189 8 158 8.17e-49 162
Msa0425990 AT5G46590.2 59.375 128 51 1 37 163 6 133 1.11e-48 162
Msa0425990 AT3G44290.1 51.656 151 64 3 40 190 17 158 1.34e-48 163
Msa0425990 AT1G71930.2 49.673 153 74 2 36 187 8 158 3.02e-48 162
Msa0425990 AT1G71930.1 49.673 153 74 2 36 187 8 158 3.02e-48 162
Msa0425990 AT3G10480.3 44.898 196 70 3 30 189 20 213 7.94e-48 165
Msa0425990 AT3G18400.1 50.980 153 70 3 37 188 5 153 9.17e-48 160
Msa0425990 AT2G33480.1 51.656 151 68 1 37 187 15 160 1.25e-47 159
Msa0425990 AT5G07680.2 43.069 202 89 5 37 219 3 197 2.69e-47 159
Msa0425990 AT5G61430.1 50.649 154 72 2 37 188 16 167 3.16e-47 159
Msa0425990 AT5G07680.1 43.069 202 89 5 37 219 17 211 3.72e-47 159
Msa0425990 AT5G39610.1 50.000 160 76 2 37 194 20 177 1.42e-46 156
Msa0425990 AT1G69490.1 39.713 209 115 4 29 233 1 202 1.54e-46 155
Msa0425990 AT4G27410.2 45.402 174 88 2 36 204 13 184 1.62e-46 156
Msa0425990 AT2G24430.2 50.633 158 73 3 36 191 15 169 1.93e-46 157
Msa0425990 AT2G24430.1 50.633 158 73 3 36 191 15 169 1.93e-46 157
Msa0425990 AT2G33480.2 51.656 151 66 2 37 187 15 158 2.24e-46 155
Msa0425990 AT1G32510.1 47.273 165 79 2 37 193 6 170 4.22e-46 155
Msa0425990 AT1G34180.3 51.007 149 73 0 40 188 19 167 9.15e-46 158
Msa0425990 AT1G32770.1 37.104 221 126 4 25 234 4 222 1.86e-45 155
Msa0425990 AT1G34180.1 51.007 149 73 0 40 188 19 167 3.50e-45 159
Msa0425990 AT2G46770.1 43.575 179 84 4 28 189 4 182 3.58e-45 155
Msa0425990 AT5G64060.1 46.104 154 83 0 35 188 4 157 3.62e-45 155
Msa0425990 AT3G15500.1 50.000 154 71 3 36 187 13 162 1.27e-44 152
Msa0425990 AT5G09330.5 48.322 149 77 0 40 188 9 157 1.71e-44 155
Msa0425990 AT5G09330.2 48.322 149 77 0 40 188 9 157 1.71e-44 155
Msa0425990 AT5G09330.4 48.322 149 77 0 40 188 9 157 1.71e-44 155
Msa0425990 AT5G09330.3 48.322 149 77 0 40 188 9 157 1.71e-44 155
Msa0425990 AT5G09330.1 48.322 149 77 0 40 188 9 157 1.71e-44 155
Msa0425990 AT3G29035.1 57.480 127 52 1 37 163 24 148 1.95e-44 152
Msa0425990 AT1G34190.1 51.678 149 72 0 40 188 19 167 2.33e-44 156
Msa0425990 AT3G15170.1 49.068 161 66 4 37 188 20 173 3.22e-44 151
Msa0425990 AT1G52890.1 48.734 158 75 3 36 191 13 166 3.54e-44 151
Msa0425990 AT1G76420.1 49.673 153 72 3 37 187 22 171 7.36e-44 150
Msa0425990 AT3G04060.1 45.198 177 82 4 37 205 20 189 8.98e-44 150
Msa0425990 AT5G08790.1 42.623 183 93 4 37 212 7 184 1.00e-43 149
Msa0425990 AT2G02450.1 49.333 150 69 4 40 187 54 198 1.35e-43 151
Msa0425990 AT4G27410.3 42.328 189 89 2 36 204 13 201 1.53e-43 149
Msa0425990 AT2G02450.2 49.333 150 69 4 40 187 54 198 1.98e-43 151
Msa0425990 AT5G18270.2 49.689 161 76 3 34 191 18 176 2.33e-43 149
Msa0425990 AT5G18270.1 49.068 161 77 3 34 191 18 176 6.75e-43 148
Msa0425990 AT1G01720.1 46.250 160 75 4 34 187 4 158 8.65e-43 147
Msa0425990 AT1G56010.2 41.538 195 94 6 37 216 19 208 9.83e-43 147
Msa0425990 AT3G61910.1 43.114 167 81 2 37 189 11 177 1.09e-42 147
Msa0425990 AT3G12977.1 44.509 173 90 5 24 194 6 174 1.12e-42 146
Msa0425990 AT3G04070.2 41.361 191 92 6 35 207 8 196 1.22e-42 148
Msa0425990 AT5G13180.1 43.636 165 85 3 25 187 2 160 1.54e-42 145
Msa0425990 AT1G34180.4 47.205 161 73 1 40 188 19 179 2.67e-42 149
Msa0425990 AT5G53950.1 49.068 161 66 4 37 188 17 170 3.83e-42 147
Msa0425990 AT1G34180.2 47.205 161 73 1 40 188 19 179 7.86e-42 150
Msa0425990 AT1G79580.3 45.570 158 79 4 36 190 16 169 1.30e-41 145
Msa0425990 AT1G79580.5 45.570 158 79 4 36 190 16 169 1.30e-41 145
Msa0425990 AT1G79580.4 45.570 158 79 4 36 190 16 169 1.30e-41 145
Msa0425990 AT1G79580.2 45.570 158 79 4 36 190 16 169 1.30e-41 145
Msa0425990 AT1G79580.1 45.570 158 79 4 36 190 16 169 1.30e-41 145
Msa0425990 AT1G77450.1 44.231 156 77 4 37 187 10 160 1.30e-41 142
Msa0425990 AT5G63790.1 45.283 159 75 4 36 187 49 202 1.65e-41 144
Msa0425990 AT5G63790.2 45.283 159 75 4 36 187 59 212 1.81e-41 144
Msa0425990 AT1G26870.1 41.104 163 83 3 40 191 19 179 3.75e-41 145
Msa0425990 AT2G43000.1 42.581 155 85 3 35 187 15 167 1.06e-40 141
Msa0425990 AT3G15510.1 42.012 169 83 3 41 196 21 187 1.95e-40 142
Msa0425990 AT1G61110.1 44.242 165 77 4 37 188 16 178 2.48e-40 141
Msa0425990 AT3G04070.1 39.130 207 90 7 35 207 8 212 2.92e-40 142
Msa0425990 AT5G39820.1 41.040 173 77 5 40 189 23 193 3.68e-40 141
Msa0425990 AT2G17040.1 45.695 151 72 3 40 187 9 152 3.79e-40 139
Msa0425990 AT5G04395.1 46.479 142 62 2 35 162 26 167 1.82e-38 132
Msa0425990 AT4G28530.1 38.288 222 106 6 37 233 10 225 2.06e-38 137
Msa0425990 AT1G32870.3 46.429 168 86 2 23 188 32 197 6.39e-38 139
Msa0425990 AT1G32870.1 49.351 154 74 2 37 188 10 161 1.05e-37 138
Msa0425990 AT1G32870.2 49.351 154 74 2 37 188 10 161 1.13e-37 138
Msa0425990 AT4G01550.1 44.872 156 77 3 39 190 6 156 2.15e-34 128
Msa0425990 AT1G52880.1 42.945 163 79 4 41 191 21 181 2.94e-34 125
Msa0425990 AT1G02230.1 39.181 171 89 7 38 202 4 165 6.46e-34 125
Msa0425990 AT4G01520.1 40.491 163 86 5 38 195 5 161 8.39e-33 121
Msa0425990 AT5G22380.1 35.260 173 105 4 35 200 3 175 1.68e-31 116
Msa0425990 AT4G01540.4 39.506 162 87 5 39 195 6 161 5.75e-31 118
Msa0425990 AT4G01540.2 39.506 162 87 5 39 195 6 161 8.69e-31 118
Msa0425990 AT4G01540.3 39.506 162 87 5 39 195 6 161 9.98e-31 118
Msa0425990 AT3G12910.1 37.427 171 83 5 40 191 24 189 1.02e-30 115
Msa0425990 AT4G01540.1 39.506 162 87 5 39 195 6 161 1.27e-30 118
Msa0425990 AT3G12977.2 50.000 102 50 1 94 194 20 121 1.66e-30 113
Msa0425990 AT5G61430.2 51.923 104 48 1 87 188 1 104 2.80e-30 114
Msa0425990 AT4G10350.2 48.454 97 50 0 93 189 19 115 6.49e-30 113
Msa0425990 AT3G44350.2 37.500 160 95 4 37 191 5 164 1.14e-29 111
Msa0425990 AT3G04420.2 39.490 157 82 4 38 189 4 152 1.60e-29 112
Msa0425990 AT3G04420.1 39.490 157 82 4 38 189 4 152 1.89e-29 113
Msa0425990 AT2G33480.3 48.544 103 53 0 85 187 1 103 3.49e-29 109
Msa0425990 AT1G02250.1 37.714 175 94 7 38 205 4 170 4.18e-29 112
Msa0425990 AT3G44350.1 41.221 131 73 3 37 163 5 135 2.05e-28 105
Msa0425990 AT1G01010.1 38.650 163 83 5 39 191 5 160 4.81e-27 108
Msa0425990 AT1G56010.1 42.336 137 62 4 94 216 8 141 5.32e-27 105
Msa0425990 AT3G10490.4 62.500 80 29 1 111 189 1 80 5.57e-27 106
Msa0425990 AT3G10490.3 62.500 80 29 1 111 189 1 80 5.57e-27 106
Msa0425990 AT1G02220.1 38.411 151 81 4 38 185 4 145 6.31e-25 102
Msa0425990 AT2G18060.2 55.714 70 29 1 118 187 3 70 1.61e-21 90.9
Msa0425990 AT4G28530.2 44.037 109 43 2 37 129 10 116 4.73e-20 87.4
Msa0425990 AT5G22290.2 52.703 74 28 2 117 190 1 67 1.42e-18 82.0
Msa0425990 AT5G64530.2 33.333 129 70 4 36 162 2 116 1.42e-17 77.4
Msa0425990 AT2G43000.2 43.182 88 45 3 103 187 4 89 1.97e-17 78.2
Msa0425990 AT5G64530.1 28.402 169 91 5 36 188 2 156 1.98e-17 77.8
Msa0425990 AT3G56530.1 28.947 152 103 3 36 185 51 199 1.89e-16 77.4
Msa0425990 AT3G55210.1 29.630 162 96 5 37 185 11 167 7.14e-16 75.5
Msa0425990 AT3G04430.1 34.559 136 75 5 43 166 6 139 5.83e-15 71.6
Msa0425990 AT5G50820.1 30.714 140 79 5 32 163 8 137 8.56e-13 65.5
Msa0425990 AT4G28500.1 31.081 148 80 8 34 163 56 199 2.74e-12 65.5
Msa0425990 AT5G14000.2 28.906 128 85 2 37 162 15 138 5.49e-12 62.4
Msa0425990 AT1G28470.1 30.612 147 81 6 34 163 74 216 1.49e-11 63.5

Find 89 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACGGGAGGAGGTCTAAT+TGG 0.260288 3_2:-76424563 Msa0425990:CDS
TGATCGGATTGTATTTCTTC+TGG 0.268816 3_2:+76424296 None:intergenic
TTTGATTTCACTCCTCTTGC+AGG 0.308531 3_2:-76427521 Msa0425990:intron
CACCACAGTTTGAAACTTCA+AGG 0.314433 3_2:+76424342 None:intergenic
CGGCAATGGTGACGAGGTTC+AGG 0.330226 3_2:-76425343 Msa0425990:CDS
TGGTTCCATCAAGCTCCTTA+AGG 0.335266 3_2:+76424517 None:intergenic
CTGTTCAATTGATTCCCATT+TGG 0.340310 3_2:+76424696 None:intergenic
CTCTGAGATACCAGGGATAA+TGG 0.352390 3_2:+76424220 None:intergenic
GAACTCAAGAGCAAAGTTAA+TGG 0.363616 3_2:-76427153 Msa0425990:five_prime_UTR
TACCTTCGTTCAAAGATTAA+CGG 0.367630 3_2:-76425363 Msa0425990:CDS
AAATCTGGAACCATCTTGAT+TGG 0.370088 3_2:-76424624 Msa0425990:CDS
GAGAAACAAATCTTGGATAC+TGG 0.371022 3_2:-76424674 Msa0425990:CDS
ATTTGCAGACATCTATTTCT+CGG 0.374614 3_2:+76425316 None:intergenic
CTTGGATACTGGAAGGCAAC+AGG 0.379088 3_2:-76424663 Msa0425990:CDS
AAGGATCGTAAAATCAAATC+TGG 0.393585 3_2:-76424639 Msa0425990:CDS
GAGAAATAGATGTCTGCAAA+TGG 0.393761 3_2:-76425314 Msa0425990:CDS
GGTTCCATCAAGCTCCTTAA+GGG 0.401742 3_2:+76424518 None:intergenic
CTCATGCTACTATGCTACTT+GGG 0.405033 3_2:-76427104 Msa0425990:CDS
CCCACCCTTAAGGAGCTTGA+TGG 0.417142 3_2:-76424522 Msa0425990:CDS
CCTCATCCGTAGGTCGGAAT+CGG 0.430430 3_2:+76425400 None:intergenic
TTGAACAGAGAAACAAATCT+TGG 0.440140 3_2:-76424681 Msa0425990:CDS
TATAGAGAATGGACCTGTCC+TGG 0.443846 3_2:+76424492 None:intergenic
CATGAGGTCCAAAATCAAAC+TGG 0.444256 3_2:-76424175 Msa0425990:three_prime_UTR
CTCTGAATTCGCTTCCGCTA+GGG 0.457860 3_2:-76425425 Msa0425990:CDS
TCTCTGAATTCGCTTCCGCT+AGG 0.459745 3_2:-76425426 Msa0425990:CDS
GGGCTGCAAAGTTGCTCAAT+CGG 0.460596 3_2:-76427083 Msa0425990:CDS
CGAGTATCGTCCCACCCTTA+AGG 0.461017 3_2:-76424532 Msa0425990:CDS
CAGGATCGACAATATCCAAA+TGG 0.461132 3_2:-76424711 Msa0425990:CDS
ACATTGGTCGTGCACCTAAC+GGG 0.464123 3_2:-76424578 Msa0425990:CDS
TAACGGGAGGAGGTCTAATT+GGG 0.468912 3_2:-76424562 Msa0425990:CDS
GCTCATGCTACTATGCTACT+TGG 0.470404 3_2:-76427105 Msa0425990:CDS
TACATTGGTCGTGCACCTAA+CGG 0.487095 3_2:-76424579 Msa0425990:CDS
TACTGTAATGGGAGCTTGAT+CGG 0.487473 3_2:+76424280 None:intergenic
AAGCAGCTGGCCATTATCCC+TGG 0.495297 3_2:-76424230 Msa0425990:CDS
CTGTGATGTGGATACTGTAA+TGG 0.502928 3_2:+76424268 None:intergenic
GTGGTTCTTCTTCTATCCAC+AGG 0.505437 3_2:-76424730 Msa0425990:CDS
CAATTAGACCTCCTCCCGTT+AGG 0.505976 3_2:+76424564 None:intergenic
AGAAATACCGGGCATATCCC+AGG 0.509187 3_2:+76425287 None:intergenic
AATCTGGAACCATCTTGATT+GGG 0.516096 3_2:-76424623 Msa0425990:CDS
GAAGTTTCAAACTGTGGTGA+AGG 0.519573 3_2:-76424338 Msa0425990:CDS
AGAAATAGATGTCTGCAAAT+GGG 0.521785 3_2:-76425313 Msa0425990:CDS
CCGATTCCGACCTACGGATG+AGG 0.523382 3_2:-76425400 Msa0425990:CDS
AAGTTTCAAACTGTGGTGAA+GGG 0.526196 3_2:-76424337 Msa0425990:CDS
ATGTCTGCAAATGGGAACCC+TGG 0.529666 3_2:-76425305 Msa0425990:CDS
CTTCTTCATCCCAATCAAGA+TGG 0.530609 3_2:+76424614 None:intergenic
TGTGATGTGGATACTGTAAT+GGG 0.533219 3_2:+76424269 None:intergenic
CTCTTCTCTGACCTGTGATG+TGG 0.536786 3_2:+76424256 None:intergenic
CAGAGAAGAGGATAAGCAGC+TGG 0.546645 3_2:-76424243 Msa0425990:CDS
AGGATCGACAATATCCAAAT+GGG 0.547813 3_2:-76424710 Msa0425990:CDS
GGACCGCAAATGTGCCTCAT+GGG 0.548784 3_2:-76427574 Msa0425990:five_prime_UTR
AAAGTTAATGGCAGAATGCA+TGG 0.551199 3_2:-76427141 Msa0425990:exon
AGGACCGCAAATGTGCCTCA+TGG 0.562312 3_2:-76427575 Msa0425990:five_prime_UTR
CGTTCAAAGATTAACGGCAA+TGG 0.564311 3_2:-76425357 Msa0425990:CDS
TCCATCAAGCTCCTTAAGGG+TGG 0.570617 3_2:+76424521 None:intergenic
ATAGAGAATGGACCTGTCCT+GGG 0.571682 3_2:+76424493 None:intergenic
TGATGGAACCAACCCAGGAC+AGG 0.574453 3_2:-76424505 Msa0425990:intron
TGGGAACCCTGGGATATGCC+CGG 0.576567 3_2:-76425294 Msa0425990:intron
TCTATAAGTTCCTCATCCGT+AGG 0.579136 3_2:+76425390 None:intergenic
TCACCCATGAGGCACATTTG+CGG 0.580503 3_2:+76427571 None:intergenic
TTTGGATATTGTCGATCCTG+TGG 0.582361 3_2:+76424714 None:intergenic
TGTCTGCAAATGGGAACCCT+GGG 0.584203 3_2:-76425304 Msa0425990:CDS
TGATGGACATGGCGCACATG+AGG 0.594333 3_2:-76424191 Msa0425990:three_prime_UTR
AGGGTTCCGATTCCGACCTA+CGG 0.594356 3_2:-76425406 Msa0425990:CDS
CACATCACAGGTCAGAGAAG+AGG 0.596825 3_2:-76424255 Msa0425990:CDS
AGAATGGACCTGTCCTGGGT+TGG 0.599825 3_2:+76424497 None:intergenic
AACAAATCTTGGATACTGGA+AGG 0.600211 3_2:-76424670 Msa0425990:CDS
AGTTTCAAACTGTGGTGAAG+GGG 0.601390 3_2:-76424336 Msa0425990:CDS
CCATCAAGCTCCTTAAGGGT+GGG 0.602064 3_2:+76424522 None:intergenic
GTCGTGCACCTAACGGGAGG+AGG 0.604113 3_2:-76424572 Msa0425990:CDS
TGCCGTTAATCTTTGAACGA+AGG 0.604752 3_2:+76425361 None:intergenic
GAGCTTGATGGAACCAACCC+AGG 0.606347 3_2:-76424510 Msa0425990:CDS
AACCTAACCTTACCTGCAAG+AGG 0.608627 3_2:+76427509 None:intergenic
TCATGCTACTATGCTACTTG+GGG 0.608804 3_2:-76427103 Msa0425990:CDS
AATGGCAGAATGCATGGTTG+TGG 0.615291 3_2:-76427135 Msa0425990:exon
TTGGATACTGGAAGGCAACA+GGG 0.615969 3_2:-76424662 Msa0425990:CDS
CAGAGGAAAAGTGATGGACA+TGG 0.617714 3_2:-76424202 Msa0425990:exon
CATTACAGTATCCACATCAC+AGG 0.623093 3_2:-76424267 Msa0425990:CDS
GTATCTCAGAGGAAAAGTGA+TGG 0.628856 3_2:-76424208 Msa0425990:exon
AGCCTTGAAGTTTCAAACTG+TGG 0.630939 3_2:-76424344 Msa0425990:CDS
TAAGTTCCTCATCCGTAGGT+CGG 0.631642 3_2:+76425394 None:intergenic
ATGTGCCTCATGGGTGAGTG+TGG 0.634188 3_2:-76427565 Msa0425990:five_prime_UTR
GAAATACCGGGCATATCCCA+GGG 0.647709 3_2:+76425288 None:intergenic
GATTAACGGCAATGGTGACG+AGG 0.653308 3_2:-76425349 Msa0425990:CDS
ATACTGGAAGGCAACAGGGA+AGG 0.655689 3_2:-76424658 Msa0425990:CDS
TTGGTCGTGCACCTAACGGG+AGG 0.685469 3_2:-76424575 Msa0425990:CDS
CATTATCCCTGGTATCTCAG+AGG 0.695429 3_2:-76424219 Msa0425990:CDS
TAAAAGACGACGACTCAGAG+TGG 0.709699 3_2:-76424749 Msa0425990:CDS
ATTTGCCACACTCACCCATG+AGG 0.713110 3_2:+76427560 None:intergenic
GGTCGGAATCGGAACCCTAG+CGG 0.740333 3_2:+76425411 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTGTTTTTCAAATAAA+TGG - chr3_2:76424467-76424486 Msa0425990:intron 10.0%
!!! TTTATATAAACTTTTCATTA+TGG + chr3_2:76425143-76425162 None:intergenic 10.0%
!!! TTCAATTTCATTTTATATTA+TGG - chr3_2:76426206-76426225 Msa0425990:intron 10.0%
!!! ATGTTAAGTAATTTTATGTT+TGG - chr3_2:76424305-76424324 Msa0425990:CDS 15.0%
!!! TGTCAATTTTTTGATTATTT+TGG - chr3_2:76424712-76424731 Msa0425990:CDS 15.0%
!! AAAGTTTATATAAAGTAGAA+TGG - chr3_2:76425149-76425168 Msa0425990:intron 15.0%
!!! AGTCAATATTTTTAAAGTAT+CGG + chr3_2:76425849-76425868 None:intergenic 15.0%
!!! ATATTTAACCAATCAAATTT+TGG + chr3_2:76426091-76426110 None:intergenic 15.0%
!!! ATTTCATTTTATATTATGGA+TGG - chr3_2:76426210-76426229 Msa0425990:intron 15.0%
!!! TGTAGTTTTTTTTTTGTTAT+AGG - chr3_2:76426737-76426756 Msa0425990:intron 15.0%
!! TGATTTGACATAATAAAAAT+AGG + chr3_2:76427252-76427271 None:intergenic 15.0%
!! GTTCAACAATAAATAACTTT+AGG - chr3_2:76424348-76424367 Msa0425990:CDS 20.0%
!! CAAACAAATAGTTAGTTAAT+TGG + chr3_2:76424745-76424764 None:intergenic 20.0%
!! CAATTAACTAACTATTTGTT+TGG - chr3_2:76424743-76424762 Msa0425990:CDS 20.0%
!! ATGTTAAATGTTTGACAAAA+TGG - chr3_2:76424807-76424826 Msa0425990:intron 20.0%
!! ACGAATTATAAAATGAAAGA+CGG + chr3_2:76424880-76424899 None:intergenic 20.0%
!!! ATTAAGCTATTTTATCCTAA+AGG + chr3_2:76425247-76425266 None:intergenic 20.0%
!!! ATTTTTTAGGTAAAAGTTGT+CGG - chr3_2:76425678-76425697 Msa0425990:intron 20.0%
!!! GCTTACTGATTTTTTTTTTT+TGG - chr3_2:76425952-76425971 Msa0425990:intron 20.0%
!!! ATATCGTACTTTAATTTGAT+TGG - chr3_2:76426107-76426126 Msa0425990:intron 20.0%
!! GGTTAAATATTCTATTTGAT+TGG - chr3_2:76426128-76426147 Msa0425990:intron 20.0%
!!! TTTGATTGGTTAATACTTTT+CGG - chr3_2:76426142-76426161 Msa0425990:intron 20.0%
!! AAAAAAGAAAAGAGAAATAC+CGG + chr3_2:76426437-76426456 None:intergenic 20.0%
!! ATAGCTTAATTAAATGTTCA+TGG + chr3_2:76426788-76426807 None:intergenic 20.0%
!!! TTCCTTATAATTAGTTCTAG+AGG - chr3_2:76424411-76424430 Msa0425990:intron 25.0%
! GAAAAACAATATTCTCCTTA+TGG + chr3_2:76424460-76424479 None:intergenic 25.0%
! GTATTGTGTTAGTTCATTAT+GGG + chr3_2:76424772-76424791 None:intergenic 25.0%
! CATAATGAACTAACACAATA+CGG - chr3_2:76424771-76424790 Msa0425990:intron 25.0%
! AACATTTAACATGAACACTA+AGG + chr3_2:76424799-76424818 None:intergenic 25.0%
! CGAATTATAAAATGAAAGAC+GGG + chr3_2:76424879-76424898 None:intergenic 25.0%
! TGTGAGTTAATAGATTATCT+AGG - chr3_2:76425024-76425043 Msa0425990:intron 25.0%
!! TAAACTTTTCATTATGGATG+CGG + chr3_2:76425137-76425156 None:intergenic 25.0%
!! ACAGTTCTTTTTAATGCAAA+GGG + chr3_2:76425493-76425512 None:intergenic 25.0%
!! AAGTTCTTTTATCATTTGTG+AGG + chr3_2:76425556-76425575 None:intergenic 25.0%
!! GTTACAACAAGATCTTTTTA+AGG - chr3_2:76425897-76425916 Msa0425990:intron 25.0%
! AAGCATTATTATAGACATCA+TGG + chr3_2:76425936-76425955 None:intergenic 25.0%
!!! TTGATTGGTTAATACTTTTC+GGG - chr3_2:76426143-76426162 Msa0425990:intron 25.0%
! AAAAAGAAAAGAGAAATACC+GGG + chr3_2:76426436-76426455 None:intergenic 25.0%
!!! GCTGATTTTTTTTTATCTCT+TGG - chr3_2:76426904-76426923 Msa0425990:intron 25.0%
!!! AAGACATTAGTTTTCTACAT+TGG - chr3_2:76427115-76427134 Msa0425990:CDS 25.0%
!!! GCATTGAGTTTTAATCTATT+AGG - chr3_2:76427567-76427586 Msa0425990:five_prime_UTR 25.0%
!! TGCCTCTAGAACTAATTATA+AGG + chr3_2:76424416-76424435 None:intergenic 30.0%
! ATTAGTTCTTCTGTTCCATA+AGG - chr3_2:76424442-76424461 Msa0425990:intron 30.0%
CGTATTGTGTTAGTTCATTA+TGG + chr3_2:76424773-76424792 None:intergenic 30.0%
AACTATCTACTACACAACTT+TGG - chr3_2:76425052-76425071 Msa0425990:intron 30.0%
ACTATCTACTACACAACTTT+GGG - chr3_2:76425053-76425072 Msa0425990:intron 30.0%
! ATTTGGTAATTAGCATGTCA+TGG + chr3_2:76425082-76425101 None:intergenic 30.0%
TTACCAAATCATAACTTCAC+CGG - chr3_2:76425093-76425112 Msa0425990:intron 30.0%
GTTCAAGTATTACTAACTTC+CGG + chr3_2:76425115-76425134 None:intergenic 30.0%
! TTAGTAAGTTGGATCTAGTT+GGG + chr3_2:76425207-76425226 None:intergenic 30.0%
! TTTAGTAAGTTGGATCTAGT+TGG + chr3_2:76425208-76425227 None:intergenic 30.0%
! TATAGATTTTAAGCCTAGTG+TGG - chr3_2:76425274-76425293 Msa0425990:intron 30.0%
! TTCTTTTTAATGCAAAGGGT+CGG + chr3_2:76425489-76425508 None:intergenic 30.0%
! CACAGTTCTTTTTAATGCAA+AGG + chr3_2:76425494-76425513 None:intergenic 30.0%
! GGCTACATCATTTGAAATAT+TGG - chr3_2:76425749-76425768 Msa0425990:intron 30.0%
!!! CGAATATTTTAACTGTGAAG+AGG + chr3_2:76425806-76425825 None:intergenic 30.0%
! ATGGTTAGCCAAAATTTGAT+TGG - chr3_2:76426080-76426099 Msa0425990:intron 30.0%
TACCTTCGTTCAAAGATTAA+CGG - chr3_2:76426346-76426365 Msa0425990:intron 30.0%
! ATTTGCAGACATCTATTTCT+CGG + chr3_2:76426396-76426415 None:intergenic 30.0%
AGAAATAGATGTCTGCAAAT+GGG - chr3_2:76426396-76426415 Msa0425990:intron 30.0%
TTCAACTTTACCAAATCAAG+AGG + chr3_2:76426474-76426493 None:intergenic 30.0%
TTCACAAATGCTTATGTAAG+TGG + chr3_2:76426583-76426602 None:intergenic 30.0%
AGCATTTGTGAAATTGTTTG+AGG - chr3_2:76426591-76426610 Msa0425990:intron 30.0%
AATAGACTGAAAACAACTTG+TGG + chr3_2:76426644-76426663 None:intergenic 30.0%
TAAACAACGAAAACAGTCTA+AGG + chr3_2:76426825-76426844 None:intergenic 30.0%
! TAGACTGTTTTCGTTGTTTA+AGG - chr3_2:76426825-76426844 Msa0425990:intron 30.0%
TGTTTAAGGAATAGATCATG+AGG - chr3_2:76426839-76426858 Msa0425990:intron 30.0%
TGAGGATTTGAGTAACATAT+AGG - chr3_2:76426857-76426876 Msa0425990:intron 30.0%
!!! TTTTATCTCTTGGTTTGTGT+TGG - chr3_2:76426914-76426933 Msa0425990:intron 30.0%
!! TTTATCTCTTGGTTTGTGTT+GGG - chr3_2:76426915-76426934 Msa0425990:intron 30.0%
TTGAACAGAGAAACAAATCT+TGG - chr3_2:76427028-76427047 Msa0425990:intron 30.0%
AAGGATCGTAAAATCAAATC+TGG - chr3_2:76427070-76427089 Msa0425990:CDS 30.0%
GGAGAGAATATTATAGAGAA+TGG + chr3_2:76427231-76427250 None:intergenic 30.0%
!! CTAGTTTTCCAGTTTGATTT+TGG + chr3_2:76427545-76427564 None:intergenic 30.0%
ACACACTAAAGAACCTATAG+CGG + chr3_2:76424229-76424248 None:intergenic 35.0%
TTGTTCTGCTGTGATTGATT+AGG - chr3_2:76424252-76424271 Msa0425990:CDS 35.0%
AGGCTTATAATCAACTACTG+AGG - chr3_2:76424368-76424387 Msa0425990:CDS 35.0%
GAACTCAAGAGCAAAGTTAA+TGG - chr3_2:76424556-76424575 Msa0425990:CDS 35.0%
AAAGTTAATGGCAGAATGCA+TGG - chr3_2:76424568-76424587 Msa0425990:CDS 35.0%
! GAAATCCAATTTGGAACACA+TGG + chr3_2:76424903-76424922 None:intergenic 35.0%
TGTGTTCCAAATTGGATTTC+TGG - chr3_2:76424903-76424922 Msa0425990:intron 35.0%
!! TCCAAATTGGATTTCTGGTT+TGG - chr3_2:76424908-76424927 Msa0425990:intron 35.0%
!! CCAAATTGGATTTCTGGTTT+GGG - chr3_2:76424909-76424928 Msa0425990:intron 35.0%
!! CAAATTGGATTTCTGGTTTG+GGG - chr3_2:76424910-76424929 Msa0425990:intron 35.0%
GGTTAAGTAGTTATCTAGCA+GGG + chr3_2:76424981-76425000 None:intergenic 35.0%
AGGTTAAGTAGTTATCTAGC+AGG + chr3_2:76424982-76425001 None:intergenic 35.0%
GAGCTGAACATTTAGTAAGT+TGG + chr3_2:76425218-76425237 None:intergenic 35.0%
TGCTGTTCATAATGATGCTA+CGG - chr3_2:76425602-76425621 Msa0425990:intron 35.0%
GAGAAATAGATGTCTGCAAA+TGG - chr3_2:76426395-76426414 Msa0425990:intron 35.0%
CACATTATCTCCTCTTGATT+TGG - chr3_2:76426461-76426480 Msa0425990:intron 35.0%
GAAATTGTTTGAGGAGCTTA+TGG - chr3_2:76426600-76426619 Msa0425990:intron 35.0%
!! AAACAGTCTAAGGTCTTGTT+TGG + chr3_2:76426815-76426834 None:intergenic 35.0%
AGGATCGACAATATCCAAAT+GGG - chr3_2:76426999-76427018 Msa0425990:intron 35.0%
! CTGTTCAATTGATTCCCATT+TGG + chr3_2:76427016-76427035 None:intergenic 35.0%
GAGAAACAAATCTTGGATAC+TGG - chr3_2:76427035-76427054 Msa0425990:intron 35.0%
AACAAATCTTGGATACTGGA+AGG - chr3_2:76427039-76427058 Msa0425990:intron 35.0%
! AAATCTGGAACCATCTTGAT+TGG - chr3_2:76427085-76427104 Msa0425990:CDS 35.0%
! AATCTGGAACCATCTTGATT+GGG - chr3_2:76427086-76427105 Msa0425990:CDS 35.0%
GCACATATGCTTTCTGATAT+AGG + chr3_2:76427316-76427335 None:intergenic 35.0%
AAGTTTCAAACTGTGGTGAA+GGG - chr3_2:76427372-76427391 Msa0425990:intron 35.0%
TGATCGGATTGTATTTCTTC+TGG + chr3_2:76427416-76427435 None:intergenic 35.0%
TGTGATGTGGATACTGTAAT+GGG + chr3_2:76427443-76427462 None:intergenic 35.0%
! TTTGATTTCACTCCTCTTGC+AGG - chr3_2:76424188-76424207 Msa0425990:three_prime_UTR 40.0%
ACACTAAAGAACCTATAGCG+GGG + chr3_2:76424227-76424246 None:intergenic 40.0%
CACACTAAAGAACCTATAGC+GGG + chr3_2:76424228-76424247 None:intergenic 40.0%
GAAGCTAGCATTTGTAGCTT+TGG + chr3_2:76424394-76424413 None:intergenic 40.0%
! CTCATGCTACTATGCTACTT+GGG - chr3_2:76424605-76424624 Msa0425990:CDS 40.0%
! TCATGCTACTATGCTACTTG+GGG - chr3_2:76424606-76424625 Msa0425990:CDS 40.0%
TCGGCGCAAAAATAAGCTTA+AGG - chr3_2:76424645-76424664 Msa0425990:CDS 40.0%
TTCGTCCATGTGTTCCAAAT+TGG - chr3_2:76424895-76424914 Msa0425990:intron 40.0%
CCCAAACCAGAAATCCAATT+TGG + chr3_2:76424912-76424931 None:intergenic 40.0%
TACCTACATCTAAGCCTTTC+TGG + chr3_2:76424946-76424965 None:intergenic 40.0%
AGATTCAGTGTGATTGTGGA+AGG + chr3_2:76425002-76425021 None:intergenic 40.0%
TTCCACAATCACACTGAATC+TGG - chr3_2:76425001-76425020 Msa0425990:intron 40.0%
CTTCCGGTGAAGTTATGATT+TGG + chr3_2:76425099-76425118 None:intergenic 40.0%
GTTCAGCTCTTTGTTCCTTT+AGG - chr3_2:76425229-76425248 Msa0425990:intron 40.0%
ATTCCGACCCTTGCATTAAA+GGG - chr3_2:76425358-76425377 Msa0425990:CDS 40.0%
CACAGTTCCCTTTAATGCAA+GGG + chr3_2:76425368-76425387 None:intergenic 40.0%
TCACAGTTCCCTTTAATGCA+AGG + chr3_2:76425369-76425388 None:intergenic 40.0%
CTACCTACATCTTTCTTGTG+AGG + chr3_2:76425430-76425449 None:intergenic 40.0%
TAATGATGCTACGGCATCTA+CGG - chr3_2:76425611-76425630 Msa0425990:intron 40.0%
!! GAAACATAGCATCGATTCCA+GGG - chr3_2:76425634-76425653 Msa0425990:intron 40.0%
!!! AGCTGCTGGATGCATTTTTT+AGG - chr3_2:76425665-76425684 Msa0425990:intron 40.0%
!! TAGGTAAAAGTTGTCGGCTT+AGG - chr3_2:76425684-76425703 Msa0425990:intron 40.0%
TATGCAACAGCTTGTCTCAA+GGG - chr3_2:76425772-76425791 Msa0425990:intron 40.0%
!! AAAGTATCGGTTTCCCTTGA+GGG + chr3_2:76425836-76425855 None:intergenic 40.0%
!! TAAAGTATCGGTTTCCCTTG+AGG + chr3_2:76425837-76425856 None:intergenic 40.0%
ATGCTTACTGTTACGAGATG+CGG - chr3_2:76425983-76426002 Msa0425990:intron 40.0%
TGAAATGCTAGATTAGCACG+AGG - chr3_2:76426012-76426031 Msa0425990:intron 40.0%
CTAACCATACATGAGACAGT+TGG + chr3_2:76426068-76426087 None:intergenic 40.0%
! GTGTTTTGTCCATTGCTTGA+CGG - chr3_2:76426244-76426263 Msa0425990:intron 40.0%
TCTATAAGTTCCTCATCCGT+AGG + chr3_2:76426322-76426341 None:intergenic 40.0%
TGCCGTTAATCTTTGAACGA+AGG + chr3_2:76426351-76426370 None:intergenic 40.0%
CGTTCAAAGATTAACGGCAA+TGG - chr3_2:76426352-76426371 Msa0425990:intron 40.0%
TATGCATAGATCGCATGCTT+AGG - chr3_2:76426531-76426550 Msa0425990:intron 40.0%
ATGCATAGATCGCATGCTTA+GGG - chr3_2:76426532-76426551 Msa0425990:intron 40.0%
AAGCTTTCCATGATAGCTGA+TGG - chr3_2:76426669-76426688 Msa0425990:intron 40.0%
! GTTGTTTCCATCAGCTATCA+TGG + chr3_2:76426679-76426698 None:intergenic 40.0%
TTTGGATATTGTCGATCCTG+TGG + chr3_2:76426998-76427017 None:intergenic 40.0%
CAGGATCGACAATATCCAAA+TGG - chr3_2:76426998-76427017 Msa0425990:intron 40.0%
CTTCTTCATCCCAATCAAGA+TGG + chr3_2:76427098-76427117 None:intergenic 40.0%
AGCCTTGAAGTTTCAAACTG+TGG - chr3_2:76427365-76427384 Msa0425990:intron 40.0%
! CACCACAGTTTGAAACTTCA+AGG + chr3_2:76427370-76427389 None:intergenic 40.0%
GAAGTTTCAAACTGTGGTGA+AGG - chr3_2:76427371-76427390 Msa0425990:intron 40.0%
AGTTTCAAACTGTGGTGAAG+GGG - chr3_2:76427373-76427392 Msa0425990:intron 40.0%
! TACTGTAATGGGAGCTTGAT+CGG + chr3_2:76427432-76427451 None:intergenic 40.0%
CTGTGATGTGGATACTGTAA+TGG + chr3_2:76427444-76427463 None:intergenic 40.0%
CATTACAGTATCCACATCAC+AGG - chr3_2:76427442-76427461 Msa0425990:intron 40.0%
!!! ACTTTTCCTCTGAGATACCA+GGG + chr3_2:76427499-76427518 None:intergenic 40.0%
GTATCTCAGAGGAAAAGTGA+TGG - chr3_2:76427501-76427520 Msa0425990:intron 40.0%
CATGAGGTCCAAAATCAAAC+TGG - chr3_2:76427534-76427553 Msa0425990:five_prime_UTR 40.0%
TTTCACTCCTCTTGCAGGTA+AGG - chr3_2:76424193-76424212 Msa0425990:exon 45.0%
AACCTAACCTTACCTGCAAG+AGG + chr3_2:76424203-76424222 None:intergenic 45.0%
GATCTGATGTCTGTGATGCT+TGG - chr3_2:76424511-76424530 Msa0425990:CDS 45.0%
GATGTCTGTGATGCTTGGTT+AGG - chr3_2:76424516-76424535 Msa0425990:CDS 45.0%
AATGGCAGAATGCATGGTTG+TGG - chr3_2:76424574-76424593 Msa0425990:CDS 45.0%
GCTCATGCTACTATGCTACT+TGG - chr3_2:76424604-76424623 Msa0425990:CDS 45.0%
!! TTCTGGTTTGGGGTTAAGCA+TGG - chr3_2:76424920-76424939 Msa0425990:intron 45.0%
CACCAGATTCAGTGTGATTG+TGG + chr3_2:76425006-76425025 None:intergenic 45.0%
GGATCTAGTTGGGACACTAT+TGG + chr3_2:76425197-76425216 None:intergenic 45.0%
GATTCCGACCCTTGCATTAA+AGG - chr3_2:76425357-76425376 Msa0425990:CDS 45.0%
GTTCCCTTTAATGCAAGGGT+CGG + chr3_2:76425364-76425383 None:intergenic 45.0%
! TTCTTTTCCAACCTGCTGAG+AGG - chr3_2:76425392-76425411 Msa0425990:CDS 45.0%
! TCTTTTCCAACCTGCTGAGA+GGG - chr3_2:76425393-76425412 Msa0425990:CDS 45.0%
GTGCCTCACAAGAAAGATGT+AGG - chr3_2:76425424-76425443 Msa0425990:CDS 45.0%
! TCTTTTCCAACCTGCTGAGA+AGG - chr3_2:76425393-76425412 Msa0425990:CDS 45.0%
AATGATGCTACGGCATCTAC+GGG - chr3_2:76425612-76425631 Msa0425990:intron 45.0%
!! GGAAACATAGCATCGATTCC+AGG - chr3_2:76425633-76425652 Msa0425990:intron 45.0%
ATGCATCCAGCAGCTGTAAA+AGG + chr3_2:76425660-76425679 None:intergenic 45.0%
!! GTAAAAGTTGTCGGCTTAGG+TGG - chr3_2:76425687-76425706 Msa0425990:intron 45.0%
TCAAATGATGTAGCCAGCAG+TGG + chr3_2:76425744-76425763 None:intergenic 45.0%
GTATGCAACAGCTTGTCTCA+AGG - chr3_2:76425771-76425790 Msa0425990:intron 45.0%
!! AAGTATCGGTTTCCCTTGAG+GGG + chr3_2:76425835-76425854 None:intergenic 45.0%
ACCATACATGAGACAGTTGG+CGG + chr3_2:76426065-76426084 None:intergenic 45.0%
TAAGTTCCTCATCCGTAGGT+CGG + chr3_2:76426318-76426337 None:intergenic 45.0%
TAAAAGACGACGACTCAGAG+TGG - chr3_2:76426960-76426979 Msa0425990:intron 45.0%
GTGGTTCTTCTTCTATCCAC+AGG - chr3_2:76426979-76426998 Msa0425990:intron 45.0%
TTGGATACTGGAAGGCAACA+GGG - chr3_2:76427047-76427066 Msa0425990:intron 45.0%
TACATTGGTCGTGCACCTAA+CGG - chr3_2:76427130-76427149 Msa0425990:exon 45.0%
TAACGGGAGGAGGTCTAATT+GGG - chr3_2:76427147-76427166 Msa0425990:exon 45.0%
GGTTCCATCAAGCTCCTTAA+GGG + chr3_2:76427194-76427213 None:intergenic 45.0%
TGGTTCCATCAAGCTCCTTA+AGG + chr3_2:76427195-76427214 None:intergenic 45.0%
ATAGAGAATGGACCTGTCCT+GGG + chr3_2:76427219-76427238 None:intergenic 45.0%
TATAGAGAATGGACCTGTCC+TGG + chr3_2:76427220-76427239 None:intergenic 45.0%
!! CTCTGAGATACCAGGGATAA+TGG + chr3_2:76427492-76427511 None:intergenic 45.0%
CATTATCCCTGGTATCTCAG+AGG - chr3_2:76427490-76427509 Msa0425990:intron 45.0%
!!! CACTTTTCCTCTGAGATACC+AGG + chr3_2:76427500-76427519 None:intergenic 45.0%
!! CAGAGGAAAAGTGATGGACA+TGG - chr3_2:76427507-76427526 Msa0425990:intron 45.0%
TCACCCATGAGGCACATTTG+CGG + chr3_2:76424141-76424160 None:intergenic 50.0%
ATTTGCCACACTCACCCATG+AGG + chr3_2:76424152-76424171 None:intergenic 50.0%
CTCCTCTTGCAGGTAAGGTT+AGG - chr3_2:76424198-76424217 Msa0425990:exon 50.0%
AGGTTAGGTTACCCCGCTAT+AGG - chr3_2:76424213-76424232 Msa0425990:CDS 50.0%
GGGCTGCAAAGTTGCTCAAT+CGG - chr3_2:76424626-76424645 Msa0425990:CDS 50.0%
ATGAAAGACGGGATTCTGCG+AGG + chr3_2:76424868-76424887 None:intergenic 50.0%
GGCCAGAAAGGCTTAGATGT+AGG - chr3_2:76424941-76424960 Msa0425990:intron 50.0%
! TAAGCCTAGTGTGGAAGCAC+AGG - chr3_2:76425283-76425302 Msa0425990:intron 50.0%
TGAACCTGTGCTTCCACACT+AGG + chr3_2:76425290-76425309 None:intergenic 50.0%
ACCGCCAACTGTCTCATGTA+TGG - chr3_2:76426061-76426080 Msa0425990:intron 50.0%
TCCATTGCTTGACGGCAAGA+TGG - chr3_2:76426252-76426271 Msa0425990:intron 50.0%
ACCATCTTGCCGTCAAGCAA+TGG + chr3_2:76426256-76426275 None:intergenic 50.0%
TCTCTGAATTCGCTTCCGCT+AGG - chr3_2:76426283-76426302 Msa0425990:intron 50.0%
CTCTGAATTCGCTTCCGCTA+GGG - chr3_2:76426284-76426303 Msa0425990:intron 50.0%
! GATTAACGGCAATGGTGACG+AGG - chr3_2:76426360-76426379 Msa0425990:intron 50.0%
ATGTCTGCAAATGGGAACCC+TGG - chr3_2:76426404-76426423 Msa0425990:intron 50.0%
TGTCTGCAAATGGGAACCCT+GGG - chr3_2:76426405-76426424 Msa0425990:intron 50.0%
GAAATACCGGGCATATCCCA+GGG + chr3_2:76426424-76426443 None:intergenic 50.0%
AGAAATACCGGGCATATCCC+AGG + chr3_2:76426425-76426444 None:intergenic 50.0%
TCGCATGCTTAGGGTCTGTT+TGG - chr3_2:76426541-76426560 Msa0425990:intron 50.0%
CTTGGATACTGGAAGGCAAC+AGG - chr3_2:76427046-76427065 Msa0425990:intron 50.0%
ATACTGGAAGGCAACAGGGA+AGG - chr3_2:76427051-76427070 Msa0425990:intron 50.0%
ACATTGGTCGTGCACCTAAC+GGG - chr3_2:76427131-76427150 Msa0425990:exon 50.0%
CAATTAGACCTCCTCCCGTT+AGG + chr3_2:76427148-76427167 None:intergenic 50.0%
CTAACGGGAGGAGGTCTAAT+TGG - chr3_2:76427146-76427165 Msa0425990:exon 50.0%
CCATCAAGCTCCTTAAGGGT+GGG + chr3_2:76427190-76427209 None:intergenic 50.0%
TCCATCAAGCTCCTTAAGGG+TGG + chr3_2:76427191-76427210 None:intergenic 50.0%
CTCTTCTCTGACCTGTGATG+TGG + chr3_2:76427456-76427475 None:intergenic 50.0%
CACATCACAGGTCAGAGAAG+AGG - chr3_2:76427454-76427473 Msa0425990:intron 50.0%
CAGAGAAGAGGATAAGCAGC+TGG - chr3_2:76427466-76427485 Msa0425990:intron 50.0%
ATGTGCCTCATGGGTGAGTG+TGG - chr3_2:76424144-76424163 Msa0425990:three_prime_UTR 55.0%
GGGGTTAAGCATGGCCAGAA+AGG - chr3_2:76424929-76424948 Msa0425990:intron 55.0%
CTAGCTCCTTCTCAGCAGGT+TGG + chr3_2:76425528-76425547 None:intergenic 55.0%
ACCTGCTGAGAAGGAGCTAG+AGG - chr3_2:76425528-76425547 Msa0425990:intron 55.0%
! ACCTCTAGCTCCTTCTCAGC+AGG + chr3_2:76425532-76425551 None:intergenic 55.0%
AGTGGATCGACAGTCAGGTG+GGG + chr3_2:76425726-76425745 None:intergenic 55.0%
CAGTGGATCGACAGTCAGGT+GGG + chr3_2:76425727-76425746 None:intergenic 55.0%
ATATTCGACAGCGCCCCTCA+AGG - chr3_2:76425819-76425838 Msa0425990:intron 55.0%
TATTCGACAGCGCCCCTCAA+GGG - chr3_2:76425820-76425839 Msa0425990:intron 55.0%
AGGGTTCCGATTCCGACCTA+CGG - chr3_2:76426303-76426322 Msa0425990:intron 55.0%
CCTCATCCGTAGGTCGGAAT+CGG + chr3_2:76426312-76426331 None:intergenic 55.0%
! CGAGTATCGTCCCACCCTTA+AGG - chr3_2:76427177-76427196 Msa0425990:intron 55.0%
CCCACCCTTAAGGAGCTTGA+TGG - chr3_2:76427187-76427206 Msa0425990:intron 55.0%
GAGCTTGATGGAACCAACCC+AGG - chr3_2:76427199-76427218 Msa0425990:intron 55.0%
TGATGGAACCAACCCAGGAC+AGG - chr3_2:76427204-76427223 Msa0425990:intron 55.0%
AGAATGGACCTGTCCTGGGT+TGG + chr3_2:76427215-76427234 None:intergenic 55.0%
AAGCAGCTGGCCATTATCCC+TGG - chr3_2:76427479-76427498 Msa0425990:intron 55.0%
! TGATGGACATGGCGCACATG+AGG - chr3_2:76427518-76427537 Msa0425990:intron 55.0%
CTAGCTCCCTCTCAGCAGGT+TGG + chr3_2:76425402-76425421 None:intergenic 60.0%
ACCTGCTGAGAGGGAGCTAG+AGG - chr3_2:76425402-76425421 Msa0425990:CDS 60.0%
! ACCTCTAGCTCCCTCTCAGC+AGG + chr3_2:76425406-76425425 None:intergenic 60.0%
CCAGCAGCTGTAAAAGGCCC+TGG + chr3_2:76425654-76425673 None:intergenic 60.0%
! CCAGGGCCTTTTACAGCTGC+TGG - chr3_2:76425651-76425670 Msa0425990:intron 60.0%
GCAGTGGATCGACAGTCAGG+TGG + chr3_2:76425728-76425747 None:intergenic 60.0%
CCAGCAGTGGATCGACAGTC+AGG + chr3_2:76425731-76425750 None:intergenic 60.0%
CCTGACTGTCGATCCACTGC+TGG - chr3_2:76425728-76425747 Msa0425990:intron 60.0%
GGTCGGAATCGGAACCCTAG+CGG + chr3_2:76426301-76426320 None:intergenic 60.0%
CCGATTCCGACCTACGGATG+AGG - chr3_2:76426309-76426328 Msa0425990:intron 60.0%
! CGGCAATGGTGACGAGGTTC+AGG - chr3_2:76426366-76426385 Msa0425990:intron 60.0%
TGGGAACCCTGGGATATGCC+CGG - chr3_2:76426415-76426434 Msa0425990:intron 60.0%
TTGGTCGTGCACCTAACGGG+AGG - chr3_2:76427134-76427153 Msa0425990:exon 60.0%
GTCGTGCACCTAACGGGAGG+AGG - chr3_2:76427137-76427156 Msa0425990:exon 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 76424136 76427595 76424136 ID=Msa0425990;Name=Msa0425990
chr3_2 mRNA 76424136 76427595 76424136 ID=Msa0425990-mRNA-1;Parent=Msa0425990;Name=Msa0425990-mRNA-1;_AED=0.43;_eAED=0.43;_QI=119|1|0.8|1|0.5|0.6|5|75|241
chr3_2 exon 76424136 76424408 76424136 ID=Msa0425990-mRNA-1:exon:19739;Parent=Msa0425990-mRNA-1
chr3_2 exon 76424506 76424783 76424506 ID=Msa0425990-mRNA-1:exon:19738;Parent=Msa0425990-mRNA-1
chr3_2 exon 76425295 76425460 76425295 ID=Msa0425990-mRNA-1:exon:19737;Parent=Msa0425990-mRNA-1
chr3_2 exon 76427065 76427193 76427065 ID=Msa0425990-mRNA-1:exon:19736;Parent=Msa0425990-mRNA-1
chr3_2 exon 76427522 76427595 76427522 ID=Msa0425990-mRNA-1:exon:19735;Parent=Msa0425990-mRNA-1
chr3_2 five_prime_UTR 76427522 76427595 76427522 ID=Msa0425990-mRNA-1:five_prime_utr;Parent=Msa0425990-mRNA-1
chr3_2 five_prime_UTR 76427149 76427193 76427149 ID=Msa0425990-mRNA-1:five_prime_utr;Parent=Msa0425990-mRNA-1
chr3_2 CDS 76427065 76427148 76427065 ID=Msa0425990-mRNA-1:cds;Parent=Msa0425990-mRNA-1
chr3_2 CDS 76425295 76425460 76425295 ID=Msa0425990-mRNA-1:cds;Parent=Msa0425990-mRNA-1
chr3_2 CDS 76424506 76424783 76424506 ID=Msa0425990-mRNA-1:cds;Parent=Msa0425990-mRNA-1
chr3_2 CDS 76424211 76424408 76424211 ID=Msa0425990-mRNA-1:cds;Parent=Msa0425990-mRNA-1
chr3_2 three_prime_UTR 76424136 76424210 76424136 ID=Msa0425990-mRNA-1:three_prime_utr;Parent=Msa0425990-mRNA-1
Gene Sequence

>Msa0425990

ATGCATGGTTGTGGAGATGATGCTCATGCTACTATGCTACTTGGGGCTGCAAAGTTGCTCAATCGGCGCAAAAATAAGCTTAAGATGGTGACGTTTTCTCTGAATTCGCTTCCGCTAGGGTTCCGATTCCGACCTACGGATGAGGAACTTATAGATTACTACCTTCGTTCAAAGATTAACGGCAATGGTGACGAGGTTCAGGTTATCCGAGAAATAGATGTCTGCAAATGGGAACCCTGGGATATGCCCGATTTGTCAGTGATAAAAGACGACGACTCAGAGTGGTTCTTCTTCTATCCACAGGATCGACAATATCCAAATGGGAATCAATTGAACAGAGAAACAAATCTTGGATACTGGAAGGCAACAGGGAAGGATCGTAAAATCAAATCTGGAACCATCTTGATTGGGATGAAGAAGACATTAGTTTTCTACATTGGTCGTGCACCTAACGGGAGGAGGTCTAATTGGGTAATGCACGAGTATCGTCCCACCCTTAAGGAGCTTGATGGAACCAACCCAGGACAGAAAGCATATGTGCTATGTCGATTATTTAAGAAAAACGACGAGAGCCTTGAAGTTTCAAACTGTGGTGAAGGGGAGCAGACTAATTCAGCTCCAGAAGAAATACAATCCGATCAAGCTCCCATTACAGTATCCACATCACAGGTCAGAGAAGAGGATAAGCAGCTGGCCATTATCCCTGGTATCTCAGAGGAAAAGTGA
Protein sequence

>Msa0425990

MHGCGDDAHATMLLGAAKLLNRRKNKLKMVTFSLNSLPLGFRFRPTDEELIDYYLRSKINGNGDEVQVIREIDVCKWEPWDMPDLSVIKDDDSEWFFFYPQDRQYPNGNQLNRETNLGYWKATGKDRKIKSGTILIGMKKTLVFYIGRAPNGRRSNWVMHEYRPTLKELDGTNPGQKAYVLCRLFKKNDESLEVSNCGEGEQTNSAPEEIQSDQAPITVSTSQVREEDKQLAIIPGISEEK*