AlfalfaGEDB | Msa0432240

M. sativa cultivar zhongmu-4 / Msa0432240

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0432240	XP_024633705.1	97.230	361	9	1	1	360	1	361	0.0	719

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0432240	sp\|Q0V7T5\|Y1864_ARATH	56.474	363	134	7	1	348	73	426	3.35e-135	395

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0432240	A0A396IZN0	97.230	361	9	1	1	360	1	361	0.0	719

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0432240	Msa0521080	0.918924	8.539836e-87	-8.615850e-47
Msa0432240	Msa1450250	0.907403	5.263750e-81	-8.615850e-47
Msa0432240	Msa1456090	0.863069	3.238106e-64	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0432240	MtrunA17_Chr3g0137191	97.230	361	9	1	1	360	1	361	0.0	719
Msa0432240	MtrunA17_Chr1g0149711	77.686	363	60	2	17	358	21	383	0.0	553
Msa0432240	MtrunA17_Chr4g0005801	69.249	413	72	3	1	358	74	486	0.0	537
Msa0432240	MtrunA17_Chr2g0333691	64.577	319	110	1	32	350	92	407	1.95e-152	435
Msa0432240	MtrunA17_Chr2g0320111	44.875	361	169	6	4	338	18	374	4.35e-96	291
Msa0432240	MtrunA17_Chr1g0191631	41.071	392	182	9	3	347	49	438	3.99e-91	280
Msa0432240	MtrunA17_Chr8g0342071	43.597	367	174	4	1	334	357	723	1.83e-85	275
Msa0432240	MtrunA17_Chr2g0288121	45.485	299	158	3	45	338	22	320	1.97e-82	254
Msa0432240	MtrunA17_Chr7g0262521	47.931	290	147	3	49	334	330	619	3.64e-82	265
Msa0432240	MtrunA17_Chr1g0194541	41.954	348	183	5	6	334	219	566	1.20e-81	261

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0432240	AT2G25220.5	65.775	374	99	3	2	350	14	383	7.02e-170	479
Msa0432240	AT2G25220.1	65.775	374	99	3	2	350	63	432	9.33e-170	480
Msa0432240	AT4G32000.2	67.324	355	104	3	2	348	64	414	1.17e-166	472
Msa0432240	AT2G25220.2	73.567	314	82	1	38	350	124	437	1.81e-166	472
Msa0432240	AT4G32000.1	67.143	350	112	2	2	348	64	413	7.47e-166	470
Msa0432240	AT5G11020.3	61.918	365	124	1	1	350	1	365	3.51e-165	466
Msa0432240	AT5G11020.2	61.918	365	124	1	1	350	28	392	6.26e-165	467
Msa0432240	AT5G11020.1	61.918	365	124	1	1	350	62	426	7.22e-165	468
Msa0432240	AT5G11020.4	61.918	365	124	1	1	350	24	388	7.98e-165	466
Msa0432240	AT4G32000.3	60.051	393	111	3	2	348	64	456	4.53e-159	454

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Find 82 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTGTATGCCTA+CGG	0.586782	3_2:-84436390	Msa0432240:CDS
AAACCTTAATGTTCTTCTTT+TGG	0.231136	3_2:+84437914	None:intergenic
AAAGGACAATCTCATGGCTC+GGG	0.536530	3_2:-84438725	Msa0432240:intron
AAAGTGATGTGTATGCCTAC+GGG	0.524718	3_2:-84436389	Msa0432240:CDS
AAATGCGGAGACAGAATTTG+AGG	0.519947	3_2:-84439073	Msa0432240:intron
AAATTGCTCTTGACACAGCA+AGG	0.608923	3_2:-84438679	Msa0432240:intron
AACTGGAACAAGAGGGACGA+GGG	0.628367	3_2:+84435842	None:intergenic
AAGAAGAACATTAAGGTTTC+AGG	0.214220	3_2:-84437910	Msa0432240:CDS
AAGTGATGTGTATGCCTACG+GGG	0.736060	3_2:-84436388	Msa0432240:CDS
AATATCAAGATGCAGAGAAG+GGG	0.662627	3_2:-84439251	Msa0432240:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAAACATGAAACTCAGCAA+TGG	+	chr3_2:84436007-84436026	None:intergenic	30.0%
ATTGCTGAGTTTCATGTTTA+TGG	-	chr3_2:84436006-84436025	Msa0432240:intron	30.0%
TTTCAGGAAAGTAACATCTT+GGG	-	chr3_2:84436135-84436154	Msa0432240:intron	30.0%
GTGTATGAGTTAATGCAAAA+TGG	-	chr3_2:84436434-84436453	Msa0432240:intron	30.0%
GTCCTTTGCACAAAAAAAAA+AGG	+	chr3_2:84436577-84436596	None:intergenic	30.0%
AAGAAGAACATTAAGGTTTC+AGG	-	chr3_2:84437405-84437424	Msa0432240:intron	30.0%
ACCATCTAAAAGATATTCTG+GGG	+	chr3_2:84437448-84437467	None:intergenic	30.0%
ACGTAATTGAATTCAATGAG+GGG	+	chr3_2:84437585-84437604	None:intergenic	30.0%
GACGTAATTGAATTCAATGA+GGG	+	chr3_2:84437586-84437605	None:intergenic	30.0%
TGACGTAATTGAATTCAATG+AGG	+	chr3_2:84437587-84437606	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	84435705	84439632	84435705	ID=Msa0432240;Name=Msa0432240
chr3_2	mRNA	84435705	84439632	84435705	ID=Msa0432240-mRNA-1;Parent=Msa0432240;Name=Msa0432240-mRNA-1;_AED=0.22;_eAED=0.22;_QI=94\|1\|1\|1\|0.88\|0.8\|10\|74\|360
chr3_2	exon	84435705	84435937	84435705	ID=Msa0432240-mRNA-1:exon:23881;Parent=Msa0432240-mRNA-1
chr3_2	exon	84436137	84436226	84436137	ID=Msa0432240-mRNA-1:exon:23880;Parent=Msa0432240-mRNA-1
chr3_2	exon	84436308	84436426	84436308	ID=Msa0432240-mRNA-1:exon:23879;Parent=Msa0432240-mRNA-1
chr3_2	exon	84437872	84437971	84437872	ID=Msa0432240-mRNA-1:exon:23878;Parent=Msa0432240-mRNA-1
chr3_2	exon	84438097	84438193	84438097	ID=Msa0432240-mRNA-1:exon:23877;Parent=Msa0432240-mRNA-1
chr3_2	exon	84438680	84438743	84438680	ID=Msa0432240-mRNA-1:exon:23876;Parent=Msa0432240-mRNA-1
chr3_2	exon	84438858	84438990	84438858	ID=Msa0432240-mRNA-1:exon:23875;Parent=Msa0432240-mRNA-1
chr3_2	exon	84439074	84439264	84439074	ID=Msa0432240-mRNA-1:exon:23874;Parent=Msa0432240-mRNA-1
chr3_2	exon	84439366	84439512	84439366	ID=Msa0432240-mRNA-1:exon:23873;Parent=Msa0432240-mRNA-1
chr3_2	exon	84439556	84439632	84439556	ID=Msa0432240-mRNA-1:exon:23872;Parent=Msa0432240-mRNA-1
chr3_2	five_prime_UTR	84439556	84439632	84439556	ID=Msa0432240-mRNA-1:five_prime_utr;Parent=Msa0432240-mRNA-1
chr3_2	five_prime_UTR	84439496	84439512	84439496	ID=Msa0432240-mRNA-1:five_prime_utr;Parent=Msa0432240-mRNA-1
chr3_2	CDS	84439366	84439495	84439366	ID=Msa0432240-mRNA-1:cds;Parent=Msa0432240-mRNA-1
chr3_2	CDS	84439074	84439264	84439074	ID=Msa0432240-mRNA-1:cds;Parent=Msa0432240-mRNA-1
chr3_2	CDS	84438858	84438990	84438858	ID=Msa0432240-mRNA-1:cds;Parent=Msa0432240-mRNA-1
chr3_2	CDS	84438680	84438743	84438680	ID=Msa0432240-mRNA-1:cds;Parent=Msa0432240-mRNA-1
chr3_2	CDS	84438097	84438193	84438097	ID=Msa0432240-mRNA-1:cds;Parent=Msa0432240-mRNA-1
chr3_2	CDS	84437872	84437971	84437872	ID=Msa0432240-mRNA-1:cds;Parent=Msa0432240-mRNA-1
chr3_2	CDS	84436308	84436426	84436308	ID=Msa0432240-mRNA-1:cds;Parent=Msa0432240-mRNA-1
chr3_2	CDS	84436137	84436226	84436137	ID=Msa0432240-mRNA-1:cds;Parent=Msa0432240-mRNA-1
chr3_2	CDS	84435779	84435937	84435779	ID=Msa0432240-mRNA-1:cds;Parent=Msa0432240-mRNA-1
chr3_2	three_prime_UTR	84435705	84435778	84435705	ID=Msa0432240-mRNA-1:three_prime_utr;Parent=Msa0432240-mRNA-1

Gene Sequence

>Msa0432240

ATGAAGCTTGTTGTTCTTCTTATGCTTCTCATGGTGCTTCTTCTTATTCTTATTTTGAGTTTCATATGTTTATGGATTTACTACAACAATTATTCATCAAAATCCAAAAGAAAAAATGTTCAAAACTCAGATGCAGAGAAGGGGTGTGTTCCAATAATTGATTACAAGCAAATAGAAAAATCGACCAATAATTTTCAGGAAAGTAACATCTTGGGTATAGGTGGTTTTGGATGTGTTTACAAGGCACAATTTGATGATAATTTGGATGTTGCTGTCAAGAAACTACACTGCCAAACACAAAATGCGGAGACAGAATTTGAGAATGAGGTGGATTTATTGAGTAAAATTGAGCATCCAAATATAATTTCTTTACTCGGTTGTAGCATTAATGGAGACAATAGATTTATTGTGTATGAGTTAATGCAAAATGGATCCTTGGAAGCTCTATTACATGGACAATCTCATGGCTCGGGATTGACTTGGCATATGAGAATGAAAATTGCTCTTGACACAGCAAGAGGATTAGAATACCTACATGAGCATTGTTACCCTCGGGTGATTCATAGAGATATGAAATCTTCAAATATTCTTTTAGATGCAAACTTCAATGCCAAGCTCTCTGACTTTGGTCTGTCCATAATTGATGGGTCCCAAAAGAAGAACATTAAGGTTTCAGGAACACTAGGATACGTAGCCCCAGAATATCTTTTAGATGGTAAATTGACTGATAAAAGTGATGTGTATGCCTACGGGGTTGTACTCCTGGAGCTCCTGTTTGGAAGGAAGCCTGTAGAAAAACTGGCACCAGCTCAGTGCCAATCCCTTGTCACATGGGCCATGCCTCAGCTCACAGACAGGTCCAAACTTCCAAACATTGTGGATCCAATCATAAAGAATACAATGGATCTCAAGCATTTATACCAGGTTGCTGCGGTGGCGGTACTATGTGTGCAACCAGAGCCAAGTTACCGCCCACTTATCACAGATGTTCTTCACTCCCTCGTCCCTCTTGTTCCAGTTGAGCTTGGAGGAACACTCAGAGTGACACAATATCAAACCGATCCATCTATGAGTTTGAGCTAG

Protein sequence

>Msa0432240

MKLVVLLMLLMVLLLILILSFICLWIYYNNYSSKSKRKNVQNSDAEKGCVPIIDYKQIEKSTNNFQESNILGIGGFGCVYKAQFDDNLDVAVKKLHCQTQNAETEFENEVDLLSKIEHPNIISLLGCSINGDNRFIVYELMQNGSLEALLHGQSHGSGLTWHMRMKIALDTARGLEYLHEHCYPRVIHRDMKSSNILLDANFNAKLSDFGLSIIDGSQKKNIKVSGTLGYVAPEYLLDGKLTDKSDVYAYGVVLLELLFGRKPVEKLAPAQCQSLVTWAMPQLTDRSKLPNIVDPIIKNTMDLKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLVPLVPVELGGTLRVTQYQTDPSMSLS*