Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433140 | XP_003603512.2 | 98.929 | 747 | 7 | 1 | 20 | 766 | 1182 | 1927 | 0.0 | 1529 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433140 | sp|Q9M086|DCAF1_ARATH | 54.843 | 702 | 226 | 11 | 19 | 659 | 1100 | 1771 | 0.0 | 718 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433140 | G7JCB0 | 98.929 | 747 | 7 | 1 | 20 | 766 | 1182 | 1927 | 0.0 | 1529 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0433130 | Msa0433140 | 0.907982 | 2.811590e-81 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433140 | MtrunA17_Chr3g0138731 | 98.929 | 747 | 7 | 1 | 20 | 766 | 1182 | 1927 | 0.0 | 1529 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433140 | AT4G31160.1 | 54.843 | 702 | 226 | 11 | 19 | 659 | 1100 | 1771 | 0.0 | 718 |
Find 197 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTCTAACTTGCCTTCT+TGG | 0.203080 | 3_2:+85501767 | None:intergenic |
| CTTCTTGGATATCATATAAA+AGG | 0.205560 | 3_2:+85501782 | None:intergenic |
| TTTGATCAGTTCACTGATTA+TGG | 0.227061 | 3_2:-85501610 | Msa0433140:CDS |
| CCACATCTTAACATCTTTAG+AGG | 0.255326 | 3_2:+85501924 | None:intergenic |
| CTAACTTTCTCGTCATCTTT+TGG | 0.258468 | 3_2:-85502867 | Msa0433140:CDS |
| CGAACTGAACTTGAGCAAAT+AGG | 0.266000 | 3_2:+85502585 | None:intergenic |
| TGCTTTGGAATGGTGTCTTA+TGG | 0.269021 | 3_2:-85501663 | Msa0433140:CDS |
| GGCATTCATCGGCCAGAAAA+TGG | 0.299185 | 3_2:-85502812 | Msa0433140:CDS |
| CGTTTGGTTGGCAAGGTGAT+TGG | 0.324003 | 3_2:+85502690 | None:intergenic |
| ACACAAATTCAGTGGCCTTC+TGG | 0.324420 | 3_2:-85502990 | Msa0433140:CDS |
| TTAACATGCATTACATTTGT+TGG | 0.324611 | 3_2:-85502105 | Msa0433140:CDS |
| GCTGCCAGGTTTAGTAATTC+CGG | 0.328326 | 3_2:-85501850 | Msa0433140:CDS |
| GCTTTGGAATGGTGTCTTAT+GGG | 0.333520 | 3_2:-85501662 | Msa0433140:CDS |
| TTAGGCCATGGCGCACTTAT+CGG | 0.335578 | 3_2:-85502146 | Msa0433140:CDS |
| ATGTTATGTATGCAATATTA+AGG | 0.344272 | 3_2:-85500925 | Msa0433140:CDS |
| AAAATTTGAGTTCTCCAGTA+TGG | 0.345079 | 3_2:+85502055 | None:intergenic |
| GTAAAACATAACACTGAAAC+TGG | 0.351839 | 3_2:-85502729 | Msa0433140:CDS |
| CATGAACACTTGCAGGCATC+TGG | 0.354042 | 3_2:-85503125 | Msa0433140:intron |
| AGTGATGACGATTATGGCTT+TGG | 0.365843 | 3_2:-85500362 | Msa0433140:CDS |
| ATTGCTGTTGGTAGCCATAC+TGG | 0.367327 | 3_2:-85502069 | Msa0433140:CDS |
| TGCCTCTTTATTGCTTAAAG+AGG | 0.370007 | 3_2:-85503090 | Msa0433140:CDS |
| TTATTATAAACTCCGAAGTC+TGG | 0.370070 | 3_2:-85501024 | Msa0433140:CDS |
| ATTGGAGGAAGGGTGGTAAT+GGG | 0.370752 | 3_2:+85502321 | None:intergenic |
| GCGACTAAATGTCGGGGATC+AGG | 0.372021 | 3_2:-85502619 | Msa0433140:CDS |
| CTGCCGATTCAATGCTGCTT+TGG | 0.375568 | 3_2:-85501678 | Msa0433140:CDS |
| CGTGAATTTAAGTTTATGTA+TGG | 0.379522 | 3_2:-85502216 | Msa0433140:CDS |
| TATTGGAGGAAGGGTGGTAA+TGG | 0.382001 | 3_2:+85502320 | None:intergenic |
| TGGAGGAAGGGTGGTAATGG+GGG | 0.390383 | 3_2:+85502323 | None:intergenic |
| GCCAACCAAACGAAAGTTAT+CGG | 0.390707 | 3_2:-85502679 | Msa0433140:CDS |
| GCCTGCATACTGATGCTGTT+GGG | 0.391496 | 3_2:-85502554 | Msa0433140:CDS |
| AACTGATCAAAGCGATGAAC+AGG | 0.393344 | 3_2:+85501622 | None:intergenic |
| GGAAGTAGTGATGACGATTA+TGG | 0.394680 | 3_2:-85500368 | Msa0433140:CDS |
| TTGGAGGAAGGGTGGTAATG+GGG | 0.400200 | 3_2:+85502322 | None:intergenic |
| TGTGGGTGCAGAAGAGATAT+TGG | 0.401543 | 3_2:+85502303 | None:intergenic |
| ATGCAGCTACTCCTGCATTA+AGG | 0.402246 | 3_2:+85504085 | None:intergenic |
| TAGATCCGATAACTTTCGTT+TGG | 0.406006 | 3_2:+85502674 | None:intergenic |
| GAATCCAGTGTCACACGCTC+AGG | 0.411338 | 3_2:+85502390 | None:intergenic |
| CACTTGCAGGCATCTGGATT+GGG | 0.412279 | 3_2:-85503119 | Msa0433140:intron |
| TCCTCGCTTTCAGCATCATC+AGG | 0.412798 | 3_2:+85500644 | None:intergenic |
| CTGCCAGGTTTAGTAATTCC+GGG | 0.414389 | 3_2:-85501849 | Msa0433140:CDS |
| TAGGCCATGGCGCACTTATC+GGG | 0.419109 | 3_2:-85502145 | Msa0433140:CDS |
| TCGAGGCTTCGCTTAGGTTC+CGG | 0.421388 | 3_2:+85502273 | None:intergenic |
| TCAGCCAGATCATATGAAAT+TGG | 0.422133 | 3_2:-85500698 | Msa0433140:CDS |
| GAACCAACAGATTCATTTGT+TGG | 0.426581 | 3_2:-85500758 | Msa0433140:CDS |
| TCCGATAACTTTCGTTTGGT+TGG | 0.428794 | 3_2:+85502678 | None:intergenic |
| AGGACGAAGAAAGCAACAAT+TGG | 0.429449 | 3_2:+85501944 | None:intergenic |
| GATACATTCACTACTTCTAC+AGG | 0.437179 | 3_2:-85501736 | Msa0433140:CDS |
| CTGCATTAAGGCGCATTGAA+AGG | 0.443325 | 3_2:+85504097 | None:intergenic |
| GCTGAAGGTCATTCACTACT+TGG | 0.444034 | 3_2:+85502421 | None:intergenic |
| TTGAAGGGTGCAAGGCTGCC+AGG | 0.446063 | 3_2:-85501864 | Msa0433140:CDS |
| AACCAACAGATTCATTTGTT+GGG | 0.446238 | 3_2:-85500757 | Msa0433140:CDS |
| AACAAATGAATCTGTTGGTT+CGG | 0.447647 | 3_2:+85500760 | None:intergenic |
| GTCACACGCTCAGGGTTGTT+CGG | 0.451265 | 3_2:+85502399 | None:intergenic |
| CAGTACTGCATCTCAAATCT+AGG | 0.453057 | 3_2:-85502462 | Msa0433140:CDS |
| TCTGCACCCACATGTTTGTC+CGG | 0.453406 | 3_2:-85502292 | Msa0433140:CDS |
| CTGGAAAGCGACTAAATGTC+GGG | 0.453695 | 3_2:-85502626 | Msa0433140:CDS |
| GAAGAAACTTCCTGTGTTGT+GGG | 0.454716 | 3_2:+85503014 | None:intergenic |
| ATGGACGATGTAGACTTTGA+TGG | 0.463375 | 3_2:-85500464 | Msa0433140:CDS |
| TGCATTAAGGCGCATTGAAA+GGG | 0.463899 | 3_2:+85504098 | None:intergenic |
| ACACTTGCAGGCATCTGGAT+TGG | 0.465249 | 3_2:-85503120 | Msa0433140:intron |
| TGAAGAAACTTCCTGTGTTG+TGG | 0.465843 | 3_2:+85503013 | None:intergenic |
| CCAGAAAATGGTTACGTGCT+GGG | 0.468500 | 3_2:-85502800 | Msa0433140:CDS |
| GCCAGAAAATGGTTACGTGC+TGG | 0.469596 | 3_2:-85502801 | Msa0433140:CDS |
| CCATCGTCGTCATCATCATC+AGG | 0.477641 | 3_2:+85500497 | None:intergenic |
| AAGCCGAGCAGTCACATTAG+AGG | 0.478049 | 3_2:+85502245 | None:intergenic |
| CTTTCAATGCGCCTTAATGC+AGG | 0.480873 | 3_2:-85504096 | Msa0433140:CDS |
| TATCGACTCTCGGCATTCAT+CGG | 0.483943 | 3_2:-85502823 | Msa0433140:CDS |
| ACGAAAGTTATCGGATCTAA+AGG | 0.486738 | 3_2:-85502670 | Msa0433140:CDS |
| CAAAGCAGCATTGAATCGGC+AGG | 0.487420 | 3_2:+85501679 | None:intergenic |
| AAGTGCGCCATGGCCTAAAC+CGG | 0.490903 | 3_2:+85502151 | None:intergenic |
| GGTGGAGGCTTTCATCCTGC+TGG | 0.491468 | 3_2:-85501586 | Msa0433140:CDS |
| TTCACTGATTATGGAGGTGG+AGG | 0.491508 | 3_2:-85501601 | Msa0433140:CDS |
| GACTCTTCGCATATTGCTGT+TGG | 0.492622 | 3_2:-85502081 | Msa0433140:CDS |
| ATTCACTACTTCTACAGGGC+GGG | 0.494094 | 3_2:-85501731 | Msa0433140:CDS |
| ACGACCAATTTCATATGATC+TGG | 0.495264 | 3_2:+85500694 | None:intergenic |
| GGTTGTTGTGCAAGGGAAGA+TGG | 0.495316 | 3_2:+85503035 | None:intergenic |
| TTGAATCGGCAGGGCTAAAG+TGG | 0.495624 | 3_2:+85501689 | None:intergenic |
| GCCCAACAGCATCAGTATGC+AGG | 0.496146 | 3_2:+85502553 | None:intergenic |
| GTGTTGTGGGTTGTTGTGCA+AGG | 0.496905 | 3_2:+85503027 | None:intergenic |
| CTTGCACCCTTCAAATGATC+GGG | 0.501256 | 3_2:+85501873 | None:intergenic |
| CGACTAAATGTCGGGGATCA+GGG | 0.502509 | 3_2:-85502618 | Msa0433140:CDS |
| TTTATGTATGGTGGAGTACA+TGG | 0.502708 | 3_2:-85502204 | Msa0433140:CDS |
| CAACCCTGAGCGTGTGACAC+TGG | 0.502833 | 3_2:-85502394 | Msa0433140:CDS |
| ATTCCAAAGCAGCATTGAAT+CGG | 0.505309 | 3_2:+85501675 | None:intergenic |
| GATAGTCAAGGACTTGAATC+CGG | 0.507388 | 3_2:-85500389 | Msa0433140:CDS |
| CAGTTCACTGATTATGGAGG+TGG | 0.511273 | 3_2:-85501604 | Msa0433140:CDS |
| ATAATCGTCATCACTACTTC+CGG | 0.511481 | 3_2:+85500370 | None:intergenic |
| GCTTGCTTGAAAAGTGATGC+TGG | 0.511919 | 3_2:-85502909 | Msa0433140:CDS |
| AATGTGGTAGAGAGCTTCAC+TGG | 0.513520 | 3_2:-85502015 | Msa0433140:CDS |
| AGCCGAGCAGTCACATTAGA+GGG | 0.516976 | 3_2:+85502246 | None:intergenic |
| CCTTGCACCCTTCAAATGAT+CGG | 0.519287 | 3_2:+85501872 | None:intergenic |
| GAAGTATAATTCAAAGAATG+AGG | 0.521027 | 3_2:-85502934 | Msa0433140:CDS |
| GGTCCCACCCGATCATTTGA+AGG | 0.521192 | 3_2:-85501880 | Msa0433140:CDS |
| TCAAATACCTCATTTCCAGC+AGG | 0.521773 | 3_2:+85501571 | None:intergenic |
| GCAGAAGAGATATTGGAGGA+AGG | 0.522328 | 3_2:+85502310 | None:intergenic |
| CAGAAGAGATATTGGAGGAA+GGG | 0.529104 | 3_2:+85502311 | None:intergenic |
| CATACATAAACTTAAATTCA+CGG | 0.530125 | 3_2:+85502217 | None:intergenic |
| CGCACTTATCGGGACGATGC+GGG | 0.532908 | 3_2:-85502135 | Msa0433140:CDS |
| TCACTTCCCACACCAAAACC+AGG | 0.533912 | 3_2:+85500575 | None:intergenic |
| ATACATAAACTTAAATTCAC+GGG | 0.534670 | 3_2:+85502218 | None:intergenic |
| TAACTTTCGTTTGGTTGGCA+AGG | 0.534719 | 3_2:+85502683 | None:intergenic |
| TCTAATGTGACTGCTCGGCT+TGG | 0.535633 | 3_2:-85502243 | Msa0433140:CDS |
| CTTTCATCCTGCTGGAAATG+AGG | 0.535929 | 3_2:-85501578 | Msa0433140:intron |
| GATGCAACATCAATATTAGC+TGG | 0.536504 | 3_2:-85501901 | Msa0433140:CDS |
| AGCCTGCATACTGATGCTGT+TGG | 0.538171 | 3_2:-85502555 | Msa0433140:CDS |
| GGACGAAGAAAGCAACAATT+GGG | 0.538409 | 3_2:+85501945 | None:intergenic |
| TCAAGAACACAACGATCCAC+AGG | 0.539441 | 3_2:+85500791 | None:intergenic |
| AAAAGATTGAACAAGGGTCA+AGG | 0.541323 | 3_2:+85501981 | None:intergenic |
| AAGAGATATTGGAGGAAGGG+TGG | 0.541672 | 3_2:+85502314 | None:intergenic |
| TATTATAAACTCCGAAGTCT+GGG | 0.541721 | 3_2:-85501023 | Msa0433140:CDS |
| AATGCCGAGAGTCGATAACT+TGG | 0.541781 | 3_2:+85502829 | None:intergenic |
| CCAAAACCAGGGCCTAAAAG+AGG | 0.546028 | 3_2:+85500587 | None:intergenic |
| GAATTTAAGTTTATGTATGG+TGG | 0.547178 | 3_2:-85502213 | Msa0433140:CDS |
| GTCTTCAGAATCTACAGCAC+GGG | 0.548136 | 3_2:-85501809 | Msa0433140:CDS |
| GGGGCATCGAGGCTTCGCTT+AGG | 0.553784 | 3_2:+85502267 | None:intergenic |
| TTTCCAGATGATGAAAACAT+TGG | 0.555359 | 3_2:+85502642 | None:intergenic |
| CATATCACCTTGATCATCCA+TGG | 0.555771 | 3_2:+85500727 | None:intergenic |
| TGACTCCTCAGATTACTAGT+TGG | 0.556087 | 3_2:+85502522 | None:intergenic |
| TTCACTACTTCTACAGGGCG+GGG | 0.560930 | 3_2:-85501730 | Msa0433140:CDS |
| AGCCTCTTTAAGCAATAAAG+AGG | 0.561157 | 3_2:+85503088 | None:intergenic |
| ATGTTGGATATTGTGACTGA+TGG | 0.563163 | 3_2:-85500434 | Msa0433140:CDS |
| TCATTCACTACTTGGGAGGA+TGG | 0.563378 | 3_2:+85502429 | None:intergenic |
| CTCTAAAGATGTTAAGATGT+GGG | 0.565227 | 3_2:-85501923 | Msa0433140:CDS |
| GACACCAAGTTATCGACTCT+CGG | 0.566806 | 3_2:-85502833 | Msa0433140:CDS |
| CAGAAACAAAAGATTGAACA+AGG | 0.567426 | 3_2:+85501974 | None:intergenic |
| TTTCCCGGAATTACTAAACC+TGG | 0.567988 | 3_2:+85501846 | None:intergenic |
| GGGTGCAGAAGAGATATTGG+AGG | 0.571974 | 3_2:+85502306 | None:intergenic |
| TGTTGGATATTGTGACTGAT+GGG | 0.572203 | 3_2:-85500433 | Msa0433140:CDS |
| AAAGATTGAACAAGGGTCAA+GGG | 0.573012 | 3_2:+85501982 | None:intergenic |
| TGTTGTGGGTTGTTGTGCAA+GGG | 0.573436 | 3_2:+85503028 | None:intergenic |
| CCTCTAAAGATGTTAAGATG+TGG | 0.575500 | 3_2:-85501924 | Msa0433140:CDS |
| AACCCAACAAATGAATCTGT+TGG | 0.576666 | 3_2:+85500755 | None:intergenic |
| GCTCAGGGTTGTTCGGCTGA+AGG | 0.579073 | 3_2:+85502406 | None:intergenic |
| CCTTCTGGTCGTACTCCTAG+TGG | 0.579543 | 3_2:-85502975 | Msa0433140:CDS |
| TCTGGAAAGCGACTAAATGT+CGG | 0.579636 | 3_2:-85502627 | Msa0433140:CDS |
| GATTCAATGCTGCTTTGGAA+TGG | 0.579661 | 3_2:-85501673 | Msa0433140:CDS |
| TATTGTGACTGATGGGGATG+AGG | 0.579724 | 3_2:-85500426 | Msa0433140:CDS |
| CTGAAGGTCATTCACTACTT+GGG | 0.582494 | 3_2:+85502422 | None:intergenic |
| GATCAGTTCACTGATTATGG+AGG | 0.584139 | 3_2:-85501607 | Msa0433140:CDS |
| TGCTGTAGATTCTGAAGACA+AGG | 0.586666 | 3_2:+85501813 | None:intergenic |
| GCACCCTTCAAATGATCGGG+TGG | 0.587089 | 3_2:+85501876 | None:intergenic |
| GCAATAACATTCAATGCTCG+TGG | 0.591911 | 3_2:-85500950 | Msa0433140:CDS |
| CTTGCGCAGATCCCAGACTT+CGG | 0.592174 | 3_2:+85501012 | None:intergenic |
| GGATCAGAATCATCATCAGT+TGG | 0.592284 | 3_2:+85500665 | None:intergenic |
| CCGATCATTTGAAGGGTGCA+AGG | 0.592307 | 3_2:-85501872 | Msa0433140:CDS |
| TTTCTTCAACACAAATTCAG+TGG | 0.592897 | 3_2:-85502998 | Msa0433140:CDS |
| AATATTAAGGAGAAATCTTG+AGG | 0.606587 | 3_2:-85500912 | Msa0433140:CDS |
| TTATTAATTGTTAATCTGAG+AGG | 0.609301 | 3_2:-85500339 | Msa0433140:exon |
| CACCCTTCAAATGATCGGGT+GGG | 0.611633 | 3_2:+85501877 | None:intergenic |
| ATTTGTTGGGTTGATTACCA+TGG | 0.612876 | 3_2:-85500744 | Msa0433140:CDS |
| CGACGATGGAGGTTACATGA+TGG | 0.612928 | 3_2:-85500483 | Msa0433140:CDS |
| CCACTAGGAGTACGACCAGA+AGG | 0.614355 | 3_2:+85502975 | None:intergenic |
| CTTTGATGGACACGACATGT+TGG | 0.615601 | 3_2:-85500450 | Msa0433140:CDS |
| GTCCCACCCGATCATTTGAA+GGG | 0.616577 | 3_2:-85501879 | Msa0433140:CDS |
| AATCCAGTGTCACACGCTCA+GGG | 0.620462 | 3_2:+85502391 | None:intergenic |
| TGATTCAAACAACAATAATG+TGG | 0.620497 | 3_2:-85502031 | Msa0433140:CDS |
| GCGCACTTATCGGGACGATG+CGG | 0.622407 | 3_2:-85502136 | Msa0433140:CDS |
| TGTGACACTGGATTCTCTAG+TGG | 0.622472 | 3_2:-85502382 | Msa0433140:CDS |
| TTAGGTTCCGGACAAACATG+TGG | 0.626397 | 3_2:+85502285 | None:intergenic |
| TGCACAACAACCCACAACAC+AGG | 0.627443 | 3_2:-85503024 | Msa0433140:CDS |
| TCACACCAACTAGTAATCTG+AGG | 0.628137 | 3_2:-85502527 | Msa0433140:CDS |
| TCGACTTTATACCACTGAGT+AGG | 0.628415 | 3_2:+85500223 | None:intergenic |
| AAAGTGATGCTGGCTCTGCA+AGG | 0.628636 | 3_2:-85502899 | Msa0433140:CDS |
| TTGATTACCATGGATGATCA+AGG | 0.631827 | 3_2:-85500734 | Msa0433140:CDS |
| TCGTCCCGATAAGTGCGCCA+TGG | 0.634256 | 3_2:+85502141 | None:intergenic |
| GAAGATGGAGCAAGTAATGA+CGG | 0.634292 | 3_2:+85503050 | None:intergenic |
| CATATGAAATTGGTCGTCGG+AGG | 0.640211 | 3_2:-85500688 | Msa0433140:CDS |
| CCGTTGTACAGCTGACTATG+TGG | 0.642799 | 3_2:-85502493 | Msa0433140:CDS |
| TGGAGTACATGGTAATCGCA+AGG | 0.642864 | 3_2:-85502193 | Msa0433140:CDS |
| TCCTGATGATGCTGAAAGCG+AGG | 0.644801 | 3_2:-85500645 | Msa0433140:CDS |
| AAGGTCATTCACTACTTGGG+AGG | 0.651470 | 3_2:+85502425 | None:intergenic |
| CAAGAACACAACGATCCACA+GGG | 0.652361 | 3_2:+85500792 | None:intergenic |
| AAAGCAGCATTGAATCGGCA+GGG | 0.656148 | 3_2:+85501680 | None:intergenic |
| CCTGATGATGATGACGACGA+TGG | 0.656211 | 3_2:-85500497 | Msa0433140:CDS |
| GAACAGGAGTAGACACTCGC+GGG | 0.656808 | 3_2:+85501638 | None:intergenic |
| AGTAATCTGAGGAGTCAGCA+AGG | 0.661412 | 3_2:-85502516 | Msa0433140:CDS |
| AACACAACGATCCACAGGGA+TGG | 0.661988 | 3_2:+85500796 | None:intergenic |
| CCGAGCAGTCACATTAGAGG+GGG | 0.663658 | 3_2:+85502248 | None:intergenic |
| TGTCTTCAGAATCTACAGCA+CGG | 0.665567 | 3_2:-85501810 | Msa0433140:CDS |
| ATTTAACTCTTCCTACTCAG+TGG | 0.667280 | 3_2:-85500234 | Msa0433140:three_prime_UTR |
| GATCATATGAAATTGGTCGT+CGG | 0.667681 | 3_2:-85500691 | Msa0433140:CDS |
| CACTTCCCACACCAAAACCA+GGG | 0.669578 | 3_2:+85500576 | None:intergenic |
| GCCGAGCAGTCACATTAGAG+GGG | 0.675918 | 3_2:+85502247 | None:intergenic |
| GATGATGATGACGACGATGG+AGG | 0.687772 | 3_2:-85500494 | Msa0433140:CDS |
| TAGGTTCCGGACAAACATGT+GGG | 0.688464 | 3_2:+85502286 | None:intergenic |
| TGGAAAGCGACTAAATGTCG+GGG | 0.688674 | 3_2:-85502625 | Msa0433140:CDS |
| TGATGATGCTGAAAGCGAGG+AGG | 0.689938 | 3_2:-85500642 | Msa0433140:CDS |
| TGACATTGCTACCATCCCTG+TGG | 0.690826 | 3_2:-85500807 | Msa0433140:CDS |
| CCACATAGTCAGCTGTACAA+CGG | 0.690876 | 3_2:+85502493 | None:intergenic |
| ATACATTCACTACTTCTACA+GGG | 0.694918 | 3_2:-85501735 | Msa0433140:CDS |
| TGAACAGGAGTAGACACTCG+CGG | 0.695158 | 3_2:+85501637 | None:intergenic |
| GACGACGATGATGATAGTCA+AGG | 0.697150 | 3_2:-85500401 | Msa0433140:CDS |
| TTACTAGTGAGAAATCCACT+AGG | 0.701974 | 3_2:+85502960 | None:intergenic |
| CATTCACTACTTCTACAGGG+CGG | 0.704110 | 3_2:-85501732 | Msa0433140:CDS |
| AGAAACAAAAGATTGAACAA+GGG | 0.715953 | 3_2:+85501975 | None:intergenic |
| GTTGGATATTGTGACTGATG+GGG | 0.747305 | 3_2:-85500432 | Msa0433140:CDS |
| CAAGGGTCAAGGGAGCATCG+TGG | 0.763754 | 3_2:+85501992 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAAATTATAAAATT+TGG | - | chr3_2:85503173-85503192 | Msa0433140:intron | 0.0% |
| !!! | TATGATATTTTTTTTAACAT+GGG | - | chr3_2:85500793-85500812 | Msa0433140:CDS | 10.0% |
| !!! | TCTTTTTCAAAGATTTATTT+TGG | - | chr3_2:85500406-85500425 | Msa0433140:CDS | 15.0% |
| !! | TTAGGATTAAATTGTTTAAA+CGG | + | chr3_2:85500435-85500454 | None:intergenic | 15.0% |
| !!! | TTATTTGAGCTTTTTAAAAA+AGG | + | chr3_2:85500511-85500530 | None:intergenic | 15.0% |
| !! | AAAAAAATATCATACAATTG+AGG | + | chr3_2:85500787-85500806 | None:intergenic | 15.0% |
| !!! | GTATGATATTTTTTTTAACA+TGG | - | chr3_2:85500792-85500811 | Msa0433140:CDS | 15.0% |
| !! | TATACATCAATTGTATTAAT+AGG | - | chr3_2:85503011-85503030 | Msa0433140:CDS | 15.0% |
| !!! | CAATATTTTGATGTATTAAA+TGG | - | chr3_2:85503090-85503109 | Msa0433140:CDS | 15.0% |
| !!! | GCATAATTGTATATATTTTT+AGG | - | chr3_2:85504080-85504099 | Msa0433140:CDS | 15.0% |
| !!! | TCAAGAAAAACAAACTTTTT+AGG | + | chr3_2:85500453-85500472 | None:intergenic | 20.0% |
| !! | NNNNNNNNNNGTCTTATGCA+GGG | - | chr3_2:85501112-85501131 | Msa0433140:intron | 20.0% |
| !! | ATACATAAACTTAAATTCAC+GGG | + | chr3_2:85502062-85502081 | None:intergenic | 20.0% |
| !! | CATACATAAACTTAAATTCA+CGG | + | chr3_2:85502063-85502082 | None:intergenic | 20.0% |
| !!! | CTCCAAGTTAATTATTTTAT+GGG | + | chr3_2:85502889-85502908 | None:intergenic | 20.0% |
| !!! | TCTCCAAGTTAATTATTTTA+TGG | + | chr3_2:85502890-85502909 | None:intergenic | 20.0% |
| !! | TGAAAATTATACTTATGTCT+TGG | + | chr3_2:85502967-85502986 | None:intergenic | 20.0% |
| !! | ATGTATTAAATGGTGAAATA+TGG | - | chr3_2:85503100-85503119 | Msa0433140:CDS | 20.0% |
| !! | ATGTTATGTATGCAATATTA+AGG | - | chr3_2:85503352-85503371 | Msa0433140:intron | 20.0% |
| !! | TTATTAATTGTTAATCTGAG+AGG | - | chr3_2:85503938-85503957 | Msa0433140:intron | 20.0% |
| !!! | TCTTCATTGTATTCATTTTT+GGG | - | chr3_2:85503975-85503994 | Msa0433140:intron | 20.0% |
| !!! | ATTTTGTTTGTGTTGTGATT+TGG | + | chr3_2:85500597-85500616 | None:intergenic | 25.0% |
| !! | AAATTTTACCATATTAACCC+AGG | + | chr3_2:85500746-85500765 | None:intergenic | 25.0% |
| ! | GAAGTATAATTCAAAGAATG+AGG | - | chr3_2:85501343-85501362 | Msa0433140:intron | 25.0% |
| !! | CGTGAATTTAAGTTTATGTA+TGG | - | chr3_2:85502061-85502080 | Msa0433140:CDS | 25.0% |
| !! | GAATTTAAGTTTATGTATGG+TGG | - | chr3_2:85502064-85502083 | Msa0433140:CDS | 25.0% |
| ! | TTAACATGCATTACATTTGT+TGG | - | chr3_2:85502172-85502191 | Msa0433140:CDS | 25.0% |
| ! | TGATTCAAACAACAATAATG+TGG | - | chr3_2:85502246-85502265 | Msa0433140:CDS | 25.0% |
| ! | AGAAACAAAAGATTGAACAA+GGG | + | chr3_2:85502305-85502324 | None:intergenic | 25.0% |
| ! | CTTCTTGGATATCATATAAA+AGG | + | chr3_2:85502498-85502517 | None:intergenic | 25.0% |
| !! | CTTTTATATGATATCCAAGA+AGG | - | chr3_2:85502496-85502515 | Msa0433140:CDS | 25.0% |
| ! | CACCCATAAAATAATTAACT+TGG | - | chr3_2:85502884-85502903 | Msa0433140:CDS | 25.0% |
| !! | AATAATTAACTTGGAGATTG+TGG | - | chr3_2:85502893-85502912 | Msa0433140:CDS | 25.0% |
| ! | AATATTAAGGAGAAATCTTG+AGG | - | chr3_2:85503365-85503384 | Msa0433140:intron | 25.0% |
| !! | CTCTTCATTGTATTCATTTT+TGG | - | chr3_2:85503974-85503993 | Msa0433140:intron | 25.0% |
| TGTAGATTGTGGCTAATTTA+GGG | + | chr3_2:85500243-85500262 | None:intergenic | 30.0% | |
| TTGTAGATTGTGGCTAATTT+AGG | + | chr3_2:85500244-85500263 | None:intergenic | 30.0% | |
| GCAATTACATTTGTAGATTG+TGG | + | chr3_2:85500254-85500273 | None:intergenic | 30.0% | |
| TTAAGTTTAAGTAAGATCGC+TGG | - | chr3_2:85500371-85500390 | Msa0433140:CDS | 30.0% | |
| ! | TGTTGTGATTTGGAAGTTTA+GGG | + | chr3_2:85500587-85500606 | None:intergenic | 30.0% |
| CAACACAAACAAAATTGACA+AGG | - | chr3_2:85500602-85500621 | Msa0433140:CDS | 30.0% | |
| ATTACAGATATTCTTCTAGC+TGG | - | chr3_2:85500658-85500677 | Msa0433140:CDS | 30.0% | |
| TTGAATAGAATAATGTGCCA+TGG | - | chr3_2:85500688-85500707 | Msa0433140:CDS | 30.0% | |
| !!! | ATTGATACTTTTTCTTGCCA+TGG | + | chr3_2:85500708-85500727 | None:intergenic | 30.0% |
| TTTCTTCAACACAAATTCAG+TGG | - | chr3_2:85501279-85501298 | Msa0433140:intron | 30.0% | |
| ! | TGTTTTACTGAAGATTCAGA+TGG | + | chr3_2:85501536-85501555 | None:intergenic | 30.0% |
| GTAAAACATAACACTGAAAC+TGG | - | chr3_2:85501548-85501567 | Msa0433140:intron | 30.0% | |
| ! | ATACCAATGTTTTCATCATC+TGG | - | chr3_2:85501632-85501651 | Msa0433140:CDS | 30.0% |
| TTTCCAGATGATGAAAACAT+TGG | + | chr3_2:85501638-85501657 | None:intergenic | 30.0% | |
| !!! | ATCGTCAATTTGTTTTTAGC+CGG | - | chr3_2:85502107-85502126 | Msa0433140:CDS | 30.0% |
| !!! | AATTTGTTTTTAGCCGGTTT+AGG | - | chr3_2:85502113-85502132 | Msa0433140:CDS | 30.0% |
| ! | AAAATTTGAGTTCTCCAGTA+TGG | + | chr3_2:85502225-85502244 | None:intergenic | 30.0% |
| CAGAAACAAAAGATTGAACA+AGG | + | chr3_2:85502306-85502325 | None:intergenic | 30.0% | |
| !! | CTTGTTCAATCTTTTGTTTC+TGG | - | chr3_2:85502304-85502323 | Msa0433140:CDS | 30.0% |
| ! | CTCTAAAGATGTTAAGATGT+GGG | - | chr3_2:85502354-85502373 | Msa0433140:CDS | 30.0% |
| ATACATTCACTACTTCTACA+GGG | - | chr3_2:85502542-85502561 | Msa0433140:CDS | 30.0% | |
| ! | TTTGATCAGTTCACTGATTA+TGG | - | chr3_2:85502667-85502686 | Msa0433140:CDS | 30.0% |
| TATAGAAGTGAGATGATGTT+TGG | - | chr3_2:85502828-85502847 | Msa0433140:CDS | 30.0% | |
| TTCGGAGTTTATAATAACCT+GGG | + | chr3_2:85503250-85503269 | None:intergenic | 30.0% | |
| TTATTATAAACTCCGAAGTC+TGG | - | chr3_2:85503253-85503272 | Msa0433140:intron | 30.0% | |
| TATTATAAACTCCGAAGTCT+GGG | - | chr3_2:85503254-85503273 | Msa0433140:intron | 30.0% | |
| ! | AACAAATGAATCTGTTGGTT+CGG | + | chr3_2:85503520-85503539 | None:intergenic | 30.0% |
| AACCAACAGATTCATTTGTT+GGG | - | chr3_2:85503520-85503539 | Msa0433140:intron | 30.0% | |
| ! | TTAGGAAACTGCATTTTTAC+TGG | - | chr3_2:85504098-85504117 | Msa0433140:CDS | 30.0% |
| ! | TAGGAAACTGCATTTTTACT+GGG | - | chr3_2:85504099-85504118 | Msa0433140:CDS | 30.0% |
| ! | GTTGTGATTTGGAAGTTTAG+GGG | + | chr3_2:85500586-85500605 | None:intergenic | 35.0% |
| ! | GTGTTGTGATTTGGAAGTTT+AGG | + | chr3_2:85500588-85500607 | None:intergenic | 35.0% |
| AATACCATTCAATTCCATCC+TGG | - | chr3_2:85500725-85500744 | Msa0433140:CDS | 35.0% | |
| ATACCATTCAATTCCATCCT+GGG | - | chr3_2:85500726-85500745 | Msa0433140:CDS | 35.0% | |
| AATTCCATCCTGGGTTAATA+TGG | - | chr3_2:85500735-85500754 | Msa0433140:CDS | 35.0% | |
| TTTACCATATTAACCCAGGA+TGG | + | chr3_2:85500742-85500761 | None:intergenic | 35.0% | |
| ! | TTAACATGGGTTGTGAAACT+CGG | - | chr3_2:85500806-85500825 | Msa0433140:CDS | 35.0% |
| CTTAATTCATGAACACTTGC+AGG | - | chr3_2:85501145-85501164 | Msa0433140:intron | 35.0% | |
| TGCCTCTTTATTGCTTAAAG+AGG | - | chr3_2:85501187-85501206 | Msa0433140:intron | 35.0% | |
| AGCCTCTTTAAGCAATAAAG+AGG | + | chr3_2:85501192-85501211 | None:intergenic | 35.0% | |
| TTACTAGTGAGAAATCCACT+AGG | + | chr3_2:85501320-85501339 | None:intergenic | 35.0% | |
| ! | CTAACTTTCTCGTCATCTTT+TGG | - | chr3_2:85501410-85501429 | Msa0433140:intron | 35.0% |
| TAGATCCGATAACTTTCGTT+TGG | + | chr3_2:85501606-85501625 | None:intergenic | 35.0% | |
| ACGAAAGTTATCGGATCTAA+AGG | - | chr3_2:85501607-85501626 | Msa0433140:CDS | 35.0% | |
| ! | TTTATGTATGGTGGAGTACA+TGG | - | chr3_2:85502073-85502092 | Msa0433140:CDS | 35.0% |
| AAAGATTGAACAAGGGTCAA+GGG | + | chr3_2:85502298-85502317 | None:intergenic | 35.0% | |
| AAAAGATTGAACAAGGGTCA+AGG | + | chr3_2:85502299-85502318 | None:intergenic | 35.0% | |
| CCACATCTTAACATCTTTAG+AGG | + | chr3_2:85502356-85502375 | None:intergenic | 35.0% | |
| ! | CCTCTAAAGATGTTAAGATG+TGG | - | chr3_2:85502353-85502372 | Msa0433140:CDS | 35.0% |
| GATGCAACATCAATATTAGC+TGG | - | chr3_2:85502376-85502395 | Msa0433140:CDS | 35.0% | |
| GATACATTCACTACTTCTAC+AGG | - | chr3_2:85502541-85502560 | Msa0433140:CDS | 35.0% | |
| ! | ATTCCAAAGCAGCATTGAAT+CGG | + | chr3_2:85502605-85502624 | None:intergenic | 35.0% |
| AGTATAATGTTCAGACATGC+AGG | + | chr3_2:85502735-85502754 | None:intergenic | 35.0% | |
| GTATATCTACAAGTCTACAC+TGG | + | chr3_2:85502787-85502806 | None:intergenic | 35.0% | |
| GGGTGCATAAGAAAATAATG+AGG | + | chr3_2:85502869-85502888 | None:intergenic | 35.0% | |
| GGAAGAAGGGTTATCATTTA+TGG | - | chr3_2:85502914-85502933 | Msa0433140:CDS | 35.0% | |
| ! | GCTCAACAATCATGGAATTT+TGG | + | chr3_2:85502940-85502959 | None:intergenic | 35.0% |
| AGAAATACGACTTTGTACAC+AGG | + | chr3_2:85503209-85503228 | None:intergenic | 35.0% | |
| CTTCGGAGTTTATAATAACC+TGG | + | chr3_2:85503251-85503270 | None:intergenic | 35.0% | |
| AAAAAAGCGGATGCTTAACA+CGG | + | chr3_2:85503416-85503435 | None:intergenic | 35.0% | |
| GAACCAACAGATTCATTTGT+TGG | - | chr3_2:85503519-85503538 | Msa0433140:intron | 35.0% | |
| AACCCAACAAATGAATCTGT+TGG | + | chr3_2:85503525-85503544 | None:intergenic | 35.0% | |
| !! | ATTTGTTGGGTTGATTACCA+TGG | - | chr3_2:85503533-85503552 | Msa0433140:intron | 35.0% |
| TTGATTACCATGGATGATCA+AGG | - | chr3_2:85503543-85503562 | Msa0433140:intron | 35.0% | |
| TCAGCCAGATCATATGAAAT+TGG | - | chr3_2:85503579-85503598 | Msa0433140:intron | 35.0% | |
| ACGACCAATTTCATATGATC+TGG | + | chr3_2:85503586-85503605 | None:intergenic | 35.0% | |
| GATCATATGAAATTGGTCGT+CGG | - | chr3_2:85503586-85503605 | Msa0433140:intron | 35.0% | |
| ! | GACAATGAAGATCCTCTTTT+AGG | - | chr3_2:85503678-85503697 | Msa0433140:intron | 35.0% |
| ATGTTGGATATTGTGACTGA+TGG | - | chr3_2:85503843-85503862 | Msa0433140:intron | 35.0% | |
| TGTTGGATATTGTGACTGAT+GGG | - | chr3_2:85503844-85503863 | Msa0433140:intron | 35.0% | |
| ATAATCGTCATCACTACTTC+CGG | + | chr3_2:85503910-85503929 | None:intergenic | 35.0% | |
| !! | TGTATTCATTTTTGGGCGAA+AGG | - | chr3_2:85503982-85504001 | Msa0433140:intron | 35.0% |
| ATTTAACTCTTCCTACTCAG+TGG | - | chr3_2:85504043-85504062 | Msa0433140:intron | 35.0% | |
| TGCATTAAGGCGCATTGAAA+GGG | + | chr3_2:85500182-85500201 | None:intergenic | 40.0% | |
| TAACCCAGGATGGAATTGAA+TGG | + | chr3_2:85500732-85500751 | None:intergenic | 40.0% | |
| !! | TGGGTTGAGTGAACTTGTTA+TGG | + | chr3_2:85500866-85500885 | None:intergenic | 40.0% |
| GTGTTTCAGTGTGTCATGTT+GGG | + | chr3_2:85500885-85500904 | None:intergenic | 40.0% | |
| TGTGTTTCAGTGTGTCATGT+TGG | + | chr3_2:85500886-85500905 | None:intergenic | 40.0% | |
| AGTTCAGCAACACCAAAAAG+CGG | - | chr3_2:85500905-85500924 | Msa0433140:CDS | 40.0% | |
| AGGCTGCAATTGAGCTAATT+GGG | + | chr3_2:85500941-85500960 | None:intergenic | 40.0% | |
| AATTAGCTCAATTGCAGCCT+GGG | - | chr3_2:85500941-85500960 | Msa0433140:CDS | 40.0% | |
| GAAGATGGAGCAAGTAATGA+CGG | + | chr3_2:85501230-85501249 | None:intergenic | 40.0% | |
| GAAGAAACTTCCTGTGTTGT+GGG | + | chr3_2:85501266-85501285 | None:intergenic | 40.0% | |
| TGAAGAAACTTCCTGTGTTG+TGG | + | chr3_2:85501267-85501286 | None:intergenic | 40.0% | |
| TAACTTTCGTTTGGTTGGCA+AGG | + | chr3_2:85501597-85501616 | None:intergenic | 40.0% | |
| GCCAACCAAACGAAAGTTAT+CGG | - | chr3_2:85501598-85501617 | Msa0433140:CDS | 40.0% | |
| TCCGATAACTTTCGTTTGGT+TGG | + | chr3_2:85501602-85501621 | None:intergenic | 40.0% | |
| TCTGGAAAGCGACTAAATGT+CGG | - | chr3_2:85501650-85501669 | Msa0433140:CDS | 40.0% | |
| CGAACTGAACTTGAGCAAAT+AGG | + | chr3_2:85501695-85501714 | None:intergenic | 40.0% | |
| TCACACCAACTAGTAATCTG+AGG | - | chr3_2:85501750-85501769 | Msa0433140:CDS | 40.0% | |
| TGACTCCTCAGATTACTAGT+TGG | + | chr3_2:85501758-85501777 | None:intergenic | 40.0% | |
| CAGTACTGCATCTCAAATCT+AGG | - | chr3_2:85501815-85501834 | Msa0433140:CDS | 40.0% | |
| CTGAAGGTCATTCACTACTT+GGG | + | chr3_2:85501858-85501877 | None:intergenic | 40.0% | |
| CAGAAGAGATATTGGAGGAA+GGG | + | chr3_2:85501969-85501988 | None:intergenic | 40.0% | |
| GGACGAAGAAAGCAACAATT+GGG | + | chr3_2:85502335-85502354 | None:intergenic | 40.0% | |
| AGGACGAAGAAAGCAACAAT+TGG | + | chr3_2:85502336-85502355 | None:intergenic | 40.0% | |
| TTTCCCGGAATTACTAAACC+TGG | + | chr3_2:85502434-85502453 | None:intergenic | 40.0% | |
| ! | TGCTGTAGATTCTGAAGACA+AGG | + | chr3_2:85502467-85502486 | None:intergenic | 40.0% |
| TGTCTTCAGAATCTACAGCA+CGG | - | chr3_2:85502467-85502486 | Msa0433140:CDS | 40.0% | |
| ! | TTGCTTCTAACTTGCCTTCT+TGG | + | chr3_2:85502513-85502532 | None:intergenic | 40.0% |
| !! | GATTCAATGCTGCTTTGGAA+TGG | - | chr3_2:85502604-85502623 | Msa0433140:CDS | 40.0% |
| !! | TGCTTTGGAATGGTGTCTTA+TGG | - | chr3_2:85502614-85502633 | Msa0433140:CDS | 40.0% |
| !! | GCTTTGGAATGGTGTCTTAT+GGG | - | chr3_2:85502615-85502634 | Msa0433140:CDS | 40.0% |
| AACTGATCAAAGCGATGAAC+AGG | + | chr3_2:85502658-85502677 | None:intergenic | 40.0% | |
| ! | GATCAGTTCACTGATTATGG+AGG | - | chr3_2:85502670-85502689 | Msa0433140:CDS | 40.0% |
| TCAAATACCTCATTTCCAGC+AGG | + | chr3_2:85502709-85502728 | None:intergenic | 40.0% | |
| AACTTGGAGATTGTGGAAGA+AGG | - | chr3_2:85502900-85502919 | Msa0433140:CDS | 40.0% | |
| ACTTGGAGATTGTGGAAGAA+GGG | - | chr3_2:85502901-85502920 | Msa0433140:CDS | 40.0% | |
| GCAATAACATTCAATGCTCG+TGG | - | chr3_2:85503327-85503346 | Msa0433140:intron | 40.0% | |
| CATATCACCTTGATCATCCA+TGG | + | chr3_2:85503553-85503572 | None:intergenic | 40.0% | |
| GGATCAGAATCATCATCAGT+TGG | + | chr3_2:85503615-85503634 | None:intergenic | 40.0% | |
| ATGGACGATGTAGACTTTGA+TGG | - | chr3_2:85503813-85503832 | Msa0433140:intron | 40.0% | |
| GTTGGATATTGTGACTGATG+GGG | - | chr3_2:85503845-85503864 | Msa0433140:intron | 40.0% | |
| GATAGTCAAGGACTTGAATC+CGG | - | chr3_2:85503888-85503907 | Msa0433140:intron | 40.0% | |
| ! | GGAAGTAGTGATGACGATTA+TGG | - | chr3_2:85503909-85503928 | Msa0433140:intron | 40.0% |
| ! | AGTGATGACGATTATGGCTT+TGG | - | chr3_2:85503915-85503934 | Msa0433140:intron | 40.0% |
| TCGACTTTATACCACTGAGT+AGG | + | chr3_2:85504057-85504076 | None:intergenic | 40.0% | |
| CTGCATTAAGGCGCATTGAA+AGG | + | chr3_2:85500183-85500202 | None:intergenic | 45.0% | |
| CTTTCAATGCGCCTTAATGC+AGG | - | chr3_2:85500181-85500200 | Msa0433140:three_prime_UTR | 45.0% | |
| ATGCAGCTACTCCTGCATTA+AGG | + | chr3_2:85500195-85500214 | None:intergenic | 45.0% | |
| GGCTGCAATTGAGCTAATTG+GGG | + | chr3_2:85500940-85500959 | None:intergenic | 45.0% | |
| CAGGCTGCAATTGAGCTAAT+TGG | + | chr3_2:85500942-85500961 | None:intergenic | 45.0% | |
| CAATTAGCTCAATTGCAGCC+TGG | - | chr3_2:85500940-85500959 | Msa0433140:CDS | 45.0% | |
| ! | TGTTGTGGGTTGTTGTGCAA+GGG | + | chr3_2:85501252-85501271 | None:intergenic | 45.0% |
| ACACAAATTCAGTGGCCTTC+TGG | - | chr3_2:85501287-85501306 | Msa0433140:intron | 45.0% | |
| GCTTGCTTGAAAAGTGATGC+TGG | - | chr3_2:85501368-85501387 | Msa0433140:intron | 45.0% | |
| !! | GACACCAAGTTATCGACTCT+CGG | - | chr3_2:85501444-85501463 | Msa0433140:intron | 45.0% |
| AATGCCGAGAGTCGATAACT+TGG | + | chr3_2:85501451-85501470 | None:intergenic | 45.0% | |
| !! | TATCGACTCTCGGCATTCAT+CGG | - | chr3_2:85501454-85501473 | Msa0433140:intron | 45.0% |
| CCAGAAAATGGTTACGTGCT+GGG | - | chr3_2:85501477-85501496 | Msa0433140:intron | 45.0% | |
| CTGGAAAGCGACTAAATGTC+GGG | - | chr3_2:85501651-85501670 | Msa0433140:CDS | 45.0% | |
| TGGAAAGCGACTAAATGTCG+GGG | - | chr3_2:85501652-85501671 | Msa0433140:CDS | 45.0% | |
| AGTAATCTGAGGAGTCAGCA+AGG | - | chr3_2:85501761-85501780 | Msa0433140:CDS | 45.0% | |
| CCACATAGTCAGCTGTACAA+CGG | + | chr3_2:85501787-85501806 | None:intergenic | 45.0% | |
| TCATTCACTACTTGGGAGGA+TGG | + | chr3_2:85501851-85501870 | None:intergenic | 45.0% | |
| AAGGTCATTCACTACTTGGG+AGG | + | chr3_2:85501855-85501874 | None:intergenic | 45.0% | |
| GCTGAAGGTCATTCACTACT+TGG | + | chr3_2:85501859-85501878 | None:intergenic | 45.0% | |
| TGTGACACTGGATTCTCTAG+TGG | - | chr3_2:85501895-85501914 | Msa0433140:CDS | 45.0% | |
| ATTGGAGGAAGGGTGGTAAT+GGG | + | chr3_2:85501959-85501978 | None:intergenic | 45.0% | |
| TATTGGAGGAAGGGTGGTAA+TGG | + | chr3_2:85501960-85501979 | None:intergenic | 45.0% | |
| AAGAGATATTGGAGGAAGGG+TGG | + | chr3_2:85501966-85501985 | None:intergenic | 45.0% | |
| GCAGAAGAGATATTGGAGGA+AGG | + | chr3_2:85501970-85501989 | None:intergenic | 45.0% | |
| TGTGGGTGCAGAAGAGATAT+TGG | + | chr3_2:85501977-85501996 | None:intergenic | 45.0% | |
| TAGGTTCCGGACAAACATGT+GGG | + | chr3_2:85501994-85502013 | None:intergenic | 45.0% | |
| TTAGGTTCCGGACAAACATG+TGG | + | chr3_2:85501995-85502014 | None:intergenic | 45.0% | |
| TGGAGTACATGGTAATCGCA+AGG | - | chr3_2:85502084-85502103 | Msa0433140:CDS | 45.0% | |
| !! | TTTTTAGCCGGTTTAGGCCA+TGG | - | chr3_2:85502119-85502138 | Msa0433140:CDS | 45.0% |
| GACTCTTCGCATATTGCTGT+TGG | - | chr3_2:85502196-85502215 | Msa0433140:CDS | 45.0% | |
| !! | ATTGCTGTTGGTAGCCATAC+TGG | - | chr3_2:85502208-85502227 | Msa0433140:CDS | 45.0% |
| AATGTGGTAGAGAGCTTCAC+TGG | - | chr3_2:85502262-85502281 | Msa0433140:CDS | 45.0% | |
| CTTGCACCCTTCAAATGATC+GGG | + | chr3_2:85502407-85502426 | None:intergenic | 45.0% | |
| CCTTGCACCCTTCAAATGAT+CGG | + | chr3_2:85502408-85502427 | None:intergenic | 45.0% | |
| GCTGCCAGGTTTAGTAATTC+CGG | - | chr3_2:85502427-85502446 | Msa0433140:CDS | 45.0% | |
| CTGCCAGGTTTAGTAATTCC+GGG | - | chr3_2:85502428-85502447 | Msa0433140:CDS | 45.0% | |
| GTCTTCAGAATCTACAGCAC+GGG | - | chr3_2:85502468-85502487 | Msa0433140:CDS | 45.0% | |
| CATTCACTACTTCTACAGGG+CGG | - | chr3_2:85502545-85502564 | Msa0433140:CDS | 45.0% | |
| ATTCACTACTTCTACAGGGC+GGG | - | chr3_2:85502546-85502565 | Msa0433140:CDS | 45.0% | |
| ! | AAAGCAGCATTGAATCGGCA+GGG | + | chr3_2:85502600-85502619 | None:intergenic | 45.0% |
| ! | CAGTTCACTGATTATGGAGG+TGG | - | chr3_2:85502673-85502692 | Msa0433140:CDS | 45.0% |
| ! | TTCACTGATTATGGAGGTGG+AGG | - | chr3_2:85502676-85502695 | Msa0433140:CDS | 45.0% |
| CTTTCATCCTGCTGGAAATG+AGG | - | chr3_2:85502699-85502718 | Msa0433140:CDS | 45.0% | |
| TTGGAGTCGCTCAACAATCA+TGG | + | chr3_2:85502948-85502967 | None:intergenic | 45.0% | |
| ! | ACCTTCGTTTCTGTTTTCCC+AGG | - | chr3_2:85503230-85503249 | Msa0433140:intron | 45.0% |
| ACCTGGGAAAACAGAAACGA+AGG | + | chr3_2:85503234-85503253 | None:intergenic | 45.0% | |
| GTGCGAAACGCTGAAAAAAG+CGG | + | chr3_2:85503429-85503448 | None:intergenic | 45.0% | |
| !!! | GCTTTTTTCAGCGTTTCGCA+CGG | - | chr3_2:85503428-85503447 | Msa0433140:intron | 45.0% |
| CAAGAACACAACGATCCACA+GGG | + | chr3_2:85503488-85503507 | None:intergenic | 45.0% | |
| TCAAGAACACAACGATCCAC+AGG | + | chr3_2:85503489-85503508 | None:intergenic | 45.0% | |
| CATATGAAATTGGTCGTCGG+AGG | - | chr3_2:85503589-85503608 | Msa0433140:intron | 45.0% | |
| ! | CTTTGATGGACACGACATGT+TGG | - | chr3_2:85503827-85503846 | Msa0433140:intron | 45.0% |
| TATTGTGACTGATGGGGATG+AGG | - | chr3_2:85503851-85503870 | Msa0433140:intron | 45.0% | |
| GACGACGATGATGATAGTCA+AGG | - | chr3_2:85503876-85503895 | Msa0433140:intron | 45.0% | |
| !! | GGGTAAGCATCTCCGCTTTT+TGG | + | chr3_2:85500920-85500939 | None:intergenic | 50.0% |
| TTGGAACAGAACAGGGTAGG+TGG | + | chr3_2:85500980-85500999 | None:intergenic | 50.0% | |
| CACTTGGAACAGAACAGGGT+AGG | + | chr3_2:85500983-85501002 | None:intergenic | 50.0% | |
| ACGGCACTTGGAACAGAACA+GGG | + | chr3_2:85500987-85501006 | None:intergenic | 50.0% | |
| CATGAACACTTGCAGGCATC+TGG | - | chr3_2:85501152-85501171 | Msa0433140:intron | 50.0% | |
| ACACTTGCAGGCATCTGGAT+TGG | - | chr3_2:85501157-85501176 | Msa0433140:intron | 50.0% | |
| CACTTGCAGGCATCTGGATT+GGG | - | chr3_2:85501158-85501177 | Msa0433140:intron | 50.0% | |
| GGTTGTTGTGCAAGGGAAGA+TGG | + | chr3_2:85501245-85501264 | None:intergenic | 50.0% | |
| ! | GTGTTGTGGGTTGTTGTGCA+AGG | + | chr3_2:85501253-85501272 | None:intergenic | 50.0% |
| TGCACAACAACCCACAACAC+AGG | - | chr3_2:85501253-85501272 | Msa0433140:intron | 50.0% | |
| !! | AAAGTGATGCTGGCTCTGCA+AGG | - | chr3_2:85501378-85501397 | Msa0433140:intron | 50.0% |
| GGCATTCATCGGCCAGAAAA+TGG | - | chr3_2:85501465-85501484 | Msa0433140:intron | 50.0% | |
| GCCAGAAAATGGTTACGTGC+TGG | - | chr3_2:85501476-85501495 | Msa0433140:intron | 50.0% | |
| ! | CCCAGCACGTAACCATTTTC+TGG | + | chr3_2:85501480-85501499 | None:intergenic | 50.0% |
| CGTTTGGTTGGCAAGGTGAT+TGG | + | chr3_2:85501590-85501609 | None:intergenic | 50.0% | |
| CGACTAAATGTCGGGGATCA+GGG | - | chr3_2:85501659-85501678 | Msa0433140:CDS | 50.0% | |
| AGCCTGCATACTGATGCTGT+TGG | - | chr3_2:85501722-85501741 | Msa0433140:CDS | 50.0% | |
| GCCTGCATACTGATGCTGTT+GGG | - | chr3_2:85501723-85501742 | Msa0433140:CDS | 50.0% | |
| CCGTTGTACAGCTGACTATG+TGG | - | chr3_2:85501784-85501803 | Msa0433140:CDS | 50.0% | |
| AATCCAGTGTCACACGCTCA+GGG | + | chr3_2:85501889-85501908 | None:intergenic | 50.0% | |
| ! | TTGGAGGAAGGGTGGTAATG+GGG | + | chr3_2:85501958-85501977 | None:intergenic | 50.0% |
| GGGTGCAGAAGAGATATTGG+AGG | + | chr3_2:85501974-85501993 | None:intergenic | 50.0% | |
| TCTGCACCCACATGTTTGTC+CGG | - | chr3_2:85501985-85502004 | Msa0433140:CDS | 50.0% | |
| AGCCGAGCAGTCACATTAGA+GGG | + | chr3_2:85502034-85502053 | None:intergenic | 50.0% | |
| AAGCCGAGCAGTCACATTAG+AGG | + | chr3_2:85502035-85502054 | None:intergenic | 50.0% | |
| TCTAATGTGACTGCTCGGCT+TGG | - | chr3_2:85502034-85502053 | Msa0433140:CDS | 50.0% | |
| TTAGGCCATGGCGCACTTAT+CGG | - | chr3_2:85502131-85502150 | Msa0433140:CDS | 50.0% | |
| GTCCCACCCGATCATTTGAA+GGG | - | chr3_2:85502398-85502417 | Msa0433140:CDS | 50.0% | |
| CACCCTTCAAATGATCGGGT+GGG | + | chr3_2:85502403-85502422 | None:intergenic | 50.0% | |
| ! | CCGATCATTTGAAGGGTGCA+AGG | - | chr3_2:85502405-85502424 | Msa0433140:CDS | 50.0% |
| ! | CAAGGCAGCGAATGTTTTCC+CGG | + | chr3_2:85502449-85502468 | None:intergenic | 50.0% |
| TTCACTACTTCTACAGGGCG+GGG | - | chr3_2:85502547-85502566 | Msa0433140:CDS | 50.0% | |
| TTGAATCGGCAGGGCTAAAG+TGG | + | chr3_2:85502591-85502610 | None:intergenic | 50.0% | |
| ! | CAAAGCAGCATTGAATCGGC+AGG | + | chr3_2:85502601-85502620 | None:intergenic | 50.0% |
| !! | CTGCCGATTCAATGCTGCTT+TGG | - | chr3_2:85502599-85502618 | Msa0433140:CDS | 50.0% |
| TGAACAGGAGTAGACACTCG+CGG | + | chr3_2:85502643-85502662 | None:intergenic | 50.0% | |
| !! | TTTTTCAGCGTTTCGCACGG+TGG | - | chr3_2:85503431-85503450 | Msa0433140:intron | 50.0% |
| TGACATTGCTACCATCCCTG+TGG | - | chr3_2:85503470-85503489 | Msa0433140:intron | 50.0% | |
| AACACAACGATCCACAGGGA+TGG | + | chr3_2:85503484-85503503 | None:intergenic | 50.0% | |
| ! | TCCTGATGATGCTGAAAGCG+AGG | - | chr3_2:85503632-85503651 | Msa0433140:intron | 50.0% |
| TCCTCGCTTTCAGCATCATC+AGG | + | chr3_2:85503636-85503655 | None:intergenic | 50.0% | |
| ! | TGATGATGCTGAAAGCGAGG+AGG | - | chr3_2:85503635-85503654 | Msa0433140:intron | 50.0% |
| ! | GAAGATCCTCTTTTAGGCCC+TGG | - | chr3_2:85503684-85503703 | Msa0433140:intron | 50.0% |
| CCAAAACCAGGGCCTAAAAG+AGG | + | chr3_2:85503693-85503712 | None:intergenic | 50.0% | |
| ! | CCTCTTTTAGGCCCTGGTTT+TGG | - | chr3_2:85503690-85503709 | Msa0433140:intron | 50.0% |
| !!! | TTTAGGCCCTGGTTTTGGTG+TGG | - | chr3_2:85503695-85503714 | Msa0433140:intron | 50.0% |
| !!! | TTAGGCCCTGGTTTTGGTGT+GGG | - | chr3_2:85503696-85503715 | Msa0433140:intron | 50.0% |
| CACTTCCCACACCAAAACCA+GGG | + | chr3_2:85503704-85503723 | None:intergenic | 50.0% | |
| TCACTTCCCACACCAAAACC+AGG | + | chr3_2:85503705-85503724 | None:intergenic | 50.0% | |
| CCATCGTCGTCATCATCATC+AGG | + | chr3_2:85503783-85503802 | None:intergenic | 50.0% | |
| ! | CCTGATGATGATGACGACGA+TGG | - | chr3_2:85503780-85503799 | Msa0433140:intron | 50.0% |
| ! | GATGATGATGACGACGATGG+AGG | - | chr3_2:85503783-85503802 | Msa0433140:intron | 50.0% |
| CGACGATGGAGGTTACATGA+TGG | - | chr3_2:85503794-85503813 | Msa0433140:intron | 50.0% | |
| GTGGCAAGCTGAACTATCCC+AGG | + | chr3_2:85500961-85500980 | None:intergenic | 55.0% | |
| CACGGCACTTGGAACAGAAC+AGG | + | chr3_2:85500988-85501007 | None:intergenic | 55.0% | |
| ! | CCACTAGGAGTACGACCAGA+AGG | + | chr3_2:85501305-85501324 | None:intergenic | 55.0% |
| CCTTCTGGTCGTACTCCTAG+TGG | - | chr3_2:85501302-85501321 | Msa0433140:intron | 55.0% | |
| GCGACTAAATGTCGGGGATC+AGG | - | chr3_2:85501658-85501677 | Msa0433140:CDS | 55.0% | |
| GCCCAACAGCATCAGTATGC+AGG | + | chr3_2:85501727-85501746 | None:intergenic | 55.0% | |
| GTCACACGCTCAGGGTTGTT+CGG | + | chr3_2:85501881-85501900 | None:intergenic | 55.0% | |
| GAATCCAGTGTCACACGCTC+AGG | + | chr3_2:85501890-85501909 | None:intergenic | 55.0% | |
| !! | TGGAGGAAGGGTGGTAATGG+GGG | + | chr3_2:85501957-85501976 | None:intergenic | 55.0% |
| TCGAGGCTTCGCTTAGGTTC+CGG | + | chr3_2:85502007-85502026 | None:intergenic | 55.0% | |
| !! | TCACATTAGAGGGGGCATCG+AGG | + | chr3_2:85502024-85502043 | None:intergenic | 55.0% |
| CCGAGCAGTCACATTAGAGG+GGG | + | chr3_2:85502032-85502051 | None:intergenic | 55.0% | |
| CCCCCTCTAATGTGACTGCT+CGG | - | chr3_2:85502029-85502048 | Msa0433140:CDS | 55.0% | |
| GCCGAGCAGTCACATTAGAG+GGG | + | chr3_2:85502033-85502052 | None:intergenic | 55.0% | |
| AAGTGCGCCATGGCCTAAAC+CGG | + | chr3_2:85502129-85502148 | None:intergenic | 55.0% | |
| TAGGCCATGGCGCACTTATC+GGG | - | chr3_2:85502132-85502151 | Msa0433140:CDS | 55.0% | |
| GGTCCCACCCGATCATTTGA+AGG | - | chr3_2:85502397-85502416 | Msa0433140:CDS | 55.0% | |
| GCACCCTTCAAATGATCGGG+TGG | + | chr3_2:85502404-85502423 | None:intergenic | 55.0% | |
| GAACAGGAGTAGACACTCGC+GGG | + | chr3_2:85502642-85502661 | None:intergenic | 55.0% | |
| CTTGCGCAGATCCCAGACTT+CGG | + | chr3_2:85503268-85503287 | None:intergenic | 55.0% | |
| GATTCAGGCAGCACGGCACT+TGG | + | chr3_2:85500999-85501018 | None:intergenic | 60.0% | |
| GCTCAGGGTTGTTCGGCTGA+AGG | + | chr3_2:85501874-85501893 | None:intergenic | 60.0% | |
| CAACCCTGAGCGTGTGACAC+TGG | - | chr3_2:85501883-85501902 | Msa0433140:CDS | 60.0% | |
| !! | TGGTAATGGGGGCTGGGCAT+TGG | + | chr3_2:85501946-85501965 | None:intergenic | 60.0% |
| !! | GAAGGGTGGTAATGGGGGCT+GGG | + | chr3_2:85501952-85501971 | None:intergenic | 60.0% |
| TCGTCCCGATAAGTGCGCCA+TGG | + | chr3_2:85502139-85502158 | None:intergenic | 60.0% | |
| GCGCACTTATCGGGACGATG+CGG | - | chr3_2:85502141-85502160 | Msa0433140:CDS | 60.0% | |
| CGCACTTATCGGGACGATGC+GGG | - | chr3_2:85502142-85502161 | Msa0433140:CDS | 60.0% | |
| !! | CAAGGGTCAAGGGAGCATCG+TGG | + | chr3_2:85502288-85502307 | None:intergenic | 60.0% |
| ! | TTGAAGGGTGCAAGGCTGCC+AGG | - | chr3_2:85502413-85502432 | Msa0433140:CDS | 60.0% |
| GGTGGAGGCTTTCATCCTGC+TGG | - | chr3_2:85502691-85502710 | Msa0433140:CDS | 60.0% | |
| !! | GGAAGGGTGGTAATGGGGGC+TGG | + | chr3_2:85501953-85501972 | None:intergenic | 65.0% |
| !! | GGGGCATCGAGGCTTCGCTT+AGG | + | chr3_2:85502013-85502032 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 85500172 | 85504127 | 85500172 | ID=Msa0433140;Name=Msa0433140 |
| chr3_2 | mRNA | 85500172 | 85504127 | 85500172 | ID=Msa0433140-mRNA-1;Parent=Msa0433140;Name=Msa0433140-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.5|0.33|0.66|1|1|3|183|767 |
| chr3_2 | exon | 85500172 | 85501047 | 85500172 | ID=Msa0433140-mRNA-1:exon:24563;Parent=Msa0433140-mRNA-1 |
| chr3_2 | exon | 85501579 | 85503132 | 85501579 | ID=Msa0433140-mRNA-1:exon:24562;Parent=Msa0433140-mRNA-1 |
| chr3_2 | exon | 85504071 | 85504127 | 85504071 | ID=Msa0433140-mRNA-1:exon:24561;Parent=Msa0433140-mRNA-1 |
| chr3_2 | CDS | 85504071 | 85504127 | 85504071 | ID=Msa0433140-mRNA-1:cds;Parent=Msa0433140-mRNA-1 |
| chr3_2 | CDS | 85501579 | 85503132 | 85501579 | ID=Msa0433140-mRNA-1:cds;Parent=Msa0433140-mRNA-1 |
| chr3_2 | CDS | 85500355 | 85501047 | 85500355 | ID=Msa0433140-mRNA-1:cds;Parent=Msa0433140-mRNA-1 |
| chr3_2 | three_prime_UTR | 85500172 | 85500354 | 85500172 | ID=Msa0433140-mRNA-1:three_prime_utr;Parent=Msa0433140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
