AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0434030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434030 MtrunA17_Chr3g0140191 99.299 998 5 1 1 996 1 998 0.0 2040
Msa0434030 MtrunA17_Chr1g0211851 57.143 973 384 8 25 996 13 953 0.0 1129
Msa0434030 MtrunA17_Chr1g0168251 38.944 1004 545 15 37 995 53 1033 0.0 703
Msa0434030 MtrunA17_Chr1g0186391 38.038 999 565 13 37 995 31 1015 0.0 683
Msa0434030 MtrunA17_Chr6g0467051 37.293 968 568 11 58 995 188 1146 0.0 664
Msa0434030 MtrunA17_Chr8g0353581 31.073 988 583 18 36 994 181 1099 4.72e-135 434
Msa0434030 MtrunA17_Chr1g0211771 50.000 134 67 0 186 319 1 134 3.18e-43 153
Msa0434030 MtrunA17_Chr1g0211761 56.757 74 32 0 333 406 1 74 5.21e-21 89.4
Msa0434030 MtrunA17_Chr1g0211751 55.738 61 27 0 473 533 3 63 2.34e-15 71.6
Msa0434030 MtrunA17_Chr1g0211741 58.491 53 22 0 587 639 2 54 5.93e-15 70.1
Msa0434030 MtrunA17_Chr1g0211731 47.458 59 31 0 659 717 6 64 2.75e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434030 AT2G25800.1 71.314 997 272 11 3 996 2 987 0.0 1444
Msa0434030 AT2G20010.2 58.653 965 379 10 37 996 2 951 0.0 1159
Msa0434030 AT2G20010.1 60.714 840 320 7 160 996 1 833 0.0 1075
Msa0434030 AT2G33420.1 39.924 1047 558 19 11 995 1 1038 0.0 767
Msa0434030 AT1G04470.1 39.118 1020 551 18 38 995 23 1034 0.0 719
Msa0434030 AT5G06970.1 33.830 872 512 15 155 994 260 1098 2.21e-146 464
Msa0434030 AT4G11670.4 26.808 899 557 21 152 993 227 1081 2.57e-88 307
Msa0434030 AT4G11670.1 26.659 889 551 21 162 993 232 1076 1.07e-85 300
Msa0434030 AT4G11670.3 26.327 923 563 23 152 993 227 1113 2.81e-83 293
Msa0434030 AT4G11670.2 25.824 941 557 23 152 993 227 1125 2.94e-81 288

Find 298 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGCTGTTAAAGTTTCTT+AGG 0.153972 3_2:-86782431 None:intergenic
CAGCATTGAGAACTAGTTAT+TGG 0.183809 3_2:+86782446 Msa0434030:three_prime_UTR
TTCTACATTGACTTCGATAT+TGG 0.198334 3_2:+86779678 Msa0434030:CDS
CAATGTAGAACTCAAAATTT+TGG 0.201505 3_2:-86779665 None:intergenic
AAAACACGTAATAATGTATT+TGG 0.217025 3_2:-86782353 None:intergenic
GCCAAGGGCTTGGTGCTTAC+TGG 0.219166 3_2:+86782613 Msa0434030:three_prime_UTR
GGCTCAAAATTTCAAGGGTT+TGG 0.221254 3_2:+86781567 Msa0434030:CDS
ATGGAGGGCATTGTCTCTTT+AGG 0.233555 3_2:+86779763 Msa0434030:CDS
ACAAATGGGGATAGCTCTTT+TGG 0.238042 3_2:+86781642 Msa0434030:CDS
TTGCAAATCTCGTGAAAATA+TGG 0.244883 3_2:+86780827 Msa0434030:CDS
AAGAGTCCTGGTTCTGGTTC+TGG 0.246271 3_2:+86778179 Msa0434030:CDS
TATGATCTGTGAATCCTTTC+GGG 0.250223 3_2:-86782099 None:intergenic
TCTGGTTCTGCTTCCGGTTC+CGG 0.264298 3_2:+86778197 Msa0434030:CDS
GGTTTGAAATCTCCTGGTTC+TGG 0.266567 3_2:+86778149 Msa0434030:CDS
TCTGGTTCTGGTTCTGCTTC+CGG 0.272315 3_2:+86778191 Msa0434030:CDS
TTCTTGTTTGTATTGCTTGC+TGG 0.274899 3_2:+86782056 Msa0434030:CDS
GAGTTGAAGCAATTCATTTC+AGG 0.278627 3_2:+86780646 Msa0434030:CDS
TTTGGAATACTCGGAATCTT+TGG 0.280205 3_2:-86779647 None:intergenic
CATGGACTCGTTATTCTTCC+CGG 0.286039 3_2:-86779275 None:intergenic
CAGGATTGATCCGTTTCTTC+AGG 0.286621 3_2:+86781938 Msa0434030:CDS
GAGTTTCTCTTCTGAGAATT+TGG 0.289177 3_2:-86781609 None:intergenic
TCGGAGATCCCTCGTCTTCC+AGG 0.294145 3_2:+86781919 Msa0434030:CDS
GCCGCATGTCGAACCTCTTC+TGG 0.301195 3_2:+86777987 Msa0434030:CDS
GTTCATACTAGTGATAAATA+AGG 0.302707 3_2:-86782905 None:intergenic
TGGAGGGCATTGTCTCTTTA+GGG 0.304365 3_2:+86779764 Msa0434030:CDS
TTCTGCTTCCGGTTCCGGTC+AGG 0.305029 3_2:+86778202 Msa0434030:CDS
ATAATGAGAGCTTCCTTTGA+TGG 0.306004 3_2:+86782032 Msa0434030:CDS
TGCTTGCTGGAGGCCCCTCC+CGG 0.317644 3_2:+86782069 Msa0434030:CDS
CTTGTCAGTGCCGGCATTGT+TGG 0.324319 3_2:-86781534 None:intergenic
AAGTTCTAAAGGAGCTGTTT+TGG 0.333586 3_2:+86782135 Msa0434030:CDS
ATAAGCTCCCCAACCGTTAA+CGG 0.334980 3_2:-86778239 None:intergenic
TGTATACTGATAAACAAATA+AGG 0.336968 3_2:-86782982 None:intergenic
CTATGATCTGTGAATCCTTT+CGG 0.337863 3_2:-86782100 None:intergenic
AGTAAGGTTAAGAAGGCTTT+TGG 0.339002 3_2:+86778128 Msa0434030:CDS
GAAGAGGACTCTCAAGGTTC+TGG 0.339762 3_2:+86779147 Msa0434030:CDS
CCTGGGTGAATTTGATGTTC+TGG 0.342448 3_2:+86781707 Msa0434030:CDS
TGCCACTGGCCAGATGGATT+TGG 0.344716 3_2:+86779567 Msa0434030:CDS
AGAAAGAGTCAAGAAGAGTA+TGG 0.354095 3_2:-86777758 None:intergenic
GCTCAAAATTTCAAGGGTTT+GGG 0.357135 3_2:+86781568 Msa0434030:CDS
ACACAAGCCTATTTGCAAAA+AGG 0.359548 3_2:+86782689 Msa0434030:three_prime_UTR
TTCCACGATCAAAAGTTTCA+TGG 0.359783 3_2:-86779729 None:intergenic
AACTCGCAGGTTGCAACAAA+TGG 0.362002 3_2:+86781627 Msa0434030:CDS
TCTACATTGACTTCGATATT+GGG 0.363206 3_2:+86779679 Msa0434030:CDS
GAAGATCTCGTAGGCAGTTA+AGG 0.364153 3_2:-86777961 None:intergenic
CAATTTCCCCTGACCGGAAC+CGG 0.365221 3_2:-86778210 None:intergenic
CTGTCATGTCTCTTGCAAAT+AGG 0.366778 3_2:+86779314 Msa0434030:CDS
TTTGCATCCTTACATACCTT+TGG 0.368824 3_2:+86779183 Msa0434030:CDS
GTTATTCTTCCCGGTTTCGA+TGG 0.369414 3_2:-86779266 None:intergenic
AAATACTTTGCAGTGGATCC+TGG 0.374692 3_2:+86781689 Msa0434030:CDS
TGTACGTTTCAATTCTTTCT+CGG 0.375733 3_2:-86779864 None:intergenic
TCTAAGAAGAGTCCTGGTTC+TGG 0.378612 3_2:+86778173 Msa0434030:CDS
TTGGATAGGCCCATCGAAAC+CGG 0.381362 3_2:+86779256 Msa0434030:CDS
GCCTACATCCTTTGCAAGAA+TGG 0.385729 3_2:-86780518 None:intergenic
CAGCCGCTGCGCAGCAGAGT+TGG 0.386666 3_2:-86779212 None:intergenic
TCTCCAGCTGCGTGTCTTGA+AGG 0.389987 3_2:+86781816 Msa0434030:CDS
TCGTGGAAACGTTGAAACTA+TGG 0.390886 3_2:+86779744 Msa0434030:CDS
TGTTGTTGAATCTCTTCTCT+TGG 0.391006 3_2:-86777835 None:intergenic
GAAATTGAAACGACCGTTAA+CGG 0.392100 3_2:+86778226 Msa0434030:CDS
TCTGCTTCCGGTTCCGGTCA+GGG 0.394873 3_2:+86778203 Msa0434030:CDS
CTCTTTAGAGACCTTTCATT+AGG 0.397046 3_2:+86777807 Msa0434030:CDS
CTTAACACTTGAACAGCATC+AGG 0.397510 3_2:-86780685 None:intergenic
AGAATGACTATTATTGTTGT+TGG 0.398818 3_2:-86778045 None:intergenic
GCAGATTATTCATGCTGCTT+TGG 0.399117 3_2:+86779237 Msa0434030:CDS
TTGGAGTCCACAAGCAAATC+AGG 0.401211 3_2:+86781222 Msa0434030:CDS
AACTTCTACGGCTGCTAGTA+AGG 0.411095 3_2:+86778112 Msa0434030:CDS
TTGAATCTCTTCTCTTGGAA+TGG 0.413001 3_2:-86777830 None:intergenic
ACTCTCAAGGTTCTGGAGGC+TGG 0.416060 3_2:+86779154 Msa0434030:CDS
GTAGAAGCATTTCATAAATC+CGG 0.416656 3_2:-86779396 None:intergenic
ATTCCATTACCTCCAACTTC+CGG 0.419659 3_2:+86782311 Msa0434030:CDS
CGCTCAAGTTCCTGAAGAAA+CGG 0.420917 3_2:-86781948 None:intergenic
TTCTGTGTCGGTCCTGAAAA+GGG 0.421518 3_2:-86782225 None:intergenic
ACTATTATTGTTGTTGGAAG+AGG 0.421777 3_2:-86778039 None:intergenic
TCGACGCCATGCATCACTTC+AGG 0.422064 3_2:-86781343 None:intergenic
TAACGGTTGGGGAGCTTATG+AGG 0.423194 3_2:+86778243 Msa0434030:CDS
CTCTCACTGATTCATGTCAC+TGG 0.423710 3_2:+86779350 Msa0434030:CDS
ACTATTGGCTCAAAATTTCA+AGG 0.425744 3_2:+86781561 Msa0434030:CDS
TGAAACGACCGTTAACGGTT+GGG 0.425777 3_2:+86778231 Msa0434030:CDS
AAGAAGACCTGGGGAATACT+TGG 0.427059 3_2:+86779487 Msa0434030:CDS
AAGCCCTTGGCCAATGTTCT+CGG 0.427260 3_2:-86782601 None:intergenic
AGATCGTCGGCGGTAGGCGG+TGG 0.427261 3_2:-86777888 None:intergenic
GCACTGACAAGATGCACTAT+TGG 0.429867 3_2:+86781546 Msa0434030:CDS
GTACGTTTCAATTCTTTCTC+GGG 0.431558 3_2:-86779863 None:intergenic
ACTCTGCTGCGCAGCGGCTG+CGG 0.433323 3_2:+86779215 Msa0434030:CDS
TATGTGGCCAAAGCTAAATC+TGG 0.434593 3_2:+86781382 Msa0434030:CDS
TCGTCGGCGGTAGGCGGTGG+TGG 0.434640 3_2:-86777885 None:intergenic
TTTCTGTGTCGGTCCTGAAA+AGG 0.436618 3_2:-86782226 None:intergenic
CTTCGTAAGGAGGCATTTCG+CGG 0.440073 3_2:-86780792 None:intergenic
TGTCCGGAAGTTGGAGGTAA+TGG 0.440626 3_2:-86782314 None:intergenic
TAGTTATTGGAATGGCAAGC+TGG 0.442263 3_2:+86782459 Msa0434030:three_prime_UTR
ACCACAGCCAGATTTAGCTT+TGG 0.442738 3_2:-86781389 None:intergenic
GAGAACATTGGCCAAGGGCT+TGG 0.442809 3_2:+86782603 Msa0434030:three_prime_UTR
CTTCATTGCAGGTTGGAAGA+AGG 0.444714 3_2:+86779038 Msa0434030:intron
ACTCGCAGGTTGCAACAAAT+GGG 0.445481 3_2:+86781628 Msa0434030:CDS
CTGAAGAAACGGATCAATCC+TGG 0.445795 3_2:-86781937 None:intergenic
CTTTGGCCACATAATATTGA+AGG 0.446132 3_2:-86781372 None:intergenic
GATTTATCCAAAGGTATGTA+AGG 0.449903 3_2:-86779190 None:intergenic
GCTCAGAATTTCTGCTGGAC+AGG 0.452501 3_2:+86778316 Msa0434030:CDS
TTATTCTTCCCGGTTTCGAT+GGG 0.452779 3_2:-86779265 None:intergenic
AGTATGAACTGCAGTTATAC+AGG 0.453782 3_2:+86782919 Msa0434030:three_prime_UTR
GAATAGACAGACTGAAAGAC+TGG 0.454811 3_2:+86780860 Msa0434030:CDS
ATGCATTCTGCTCAAATGTC+TGG 0.456198 3_2:+86782485 Msa0434030:three_prime_UTR
AATGCTGTTAAAGTTTCTTA+GGG 0.458152 3_2:-86782430 None:intergenic
GGATGATTTCAAAGTTCTAA+AGG 0.458797 3_2:+86782124 Msa0434030:CDS
ATAAAACATGGCTTAGATCA+TGG 0.460701 3_2:-86781881 None:intergenic
CGCAGAACTTCAACAGAAGA+TGG 0.462658 3_2:-86781256 None:intergenic
GCACAAGGTCTTTCTCCAAC+TGG 0.462711 3_2:-86780717 None:intergenic
AGAGTCAAGAAGAGTATGGA+TGG 0.473582 3_2:-86777754 None:intergenic
ACTCAAGAGATGGCATCCTT+TGG 0.474605 3_2:+86780579 Msa0434030:CDS
TTTCATCGATTTGTTGCCAC+TGG 0.477890 3_2:+86779553 Msa0434030:CDS
ATGGGATTCCTCTGAATCTC+CGG 0.480843 3_2:+86779377 Msa0434030:CDS
ATCTTTAGCGACGGTGGTGA+TGG 0.481377 3_2:-86777858 None:intergenic
TACATTTATTCCAACAATGC+CGG 0.483907 3_2:+86781524 Msa0434030:CDS
GAAACGACCGTTAACGGTTG+GGG 0.484963 3_2:+86778232 Msa0434030:CDS
ATCAGATGGACCCCACTGTC+CGG 0.485545 3_2:-86782330 None:intergenic
ATCACTTCAGGAAGCAATGC+AGG 0.488114 3_2:-86781331 None:intergenic
ACCTCCAACTTCCGGACAGT+GGG 0.488634 3_2:+86782319 Msa0434030:CDS
GATTCATGTCACTGGGCAGA+TGG 0.489380 3_2:+86779358 Msa0434030:CDS
CCTCCTTGCCATTCTTGCAA+AGG 0.490097 3_2:+86780510 Msa0434030:CDS
TTCATACTAGTGATAAATAA+GGG 0.491060 3_2:-86782904 None:intergenic
GGACCCCACTGTCCGGAAGT+TGG 0.491064 3_2:-86782323 None:intergenic
AATGCAGCAACTCAAGGCTT+CGG 0.492178 3_2:+86779090 Msa0434030:CDS
TTAGTACGACCTTGCCCAGC+AGG 0.492465 3_2:+86782520 Msa0434030:three_prime_UTR
AAAGAATTGAAACGTACATC+AGG 0.492897 3_2:+86779869 Msa0434030:CDS
TGCCTTCTGAAATAATAGAC+AGG 0.494168 3_2:+86782174 Msa0434030:CDS
GACGATCTTCCTTCCCCACT+CGG 0.495307 3_2:+86777903 Msa0434030:CDS
TACACAAATGTTAAAATCCC+GGG 0.495816 3_2:-86783012 None:intergenic
ATCAACAAGAATACAATGAA+TGG 0.499135 3_2:+86779122 Msa0434030:CDS
GCGTTGCTCAGAATTTCTGC+TGG 0.499189 3_2:+86778311 Msa0434030:CDS
CTCAATGAGGCTTTCTGTGT+CGG 0.499322 3_2:-86782237 None:intergenic
GGATGCCATCTCTTGAGTAT+TGG 0.499480 3_2:-86780574 None:intergenic
TATCCTTCCTGATTTGCTTG+TGG 0.499773 3_2:-86781229 None:intergenic
CTGCTTCCGGTTCCGGTCAG+GGG 0.499825 3_2:+86778204 Msa0434030:CDS
TCAGAGATCGTTAACTTCTA+CGG 0.500517 3_2:+86778100 Msa0434030:CDS
AATGCAGGATGCATTGGTAT+TGG 0.500944 3_2:-86781316 None:intergenic
CGGATCAATCCTGGAAGACG+AGG 0.503096 3_2:-86781928 None:intergenic
AGATGGCATCCTTTGGCAGC+AGG 0.503176 3_2:+86780586 Msa0434030:CDS
GCTTGCTGGAGGCCCCTCCC+GGG 0.505010 3_2:+86782070 Msa0434030:CDS
TTGAAACGACCGTTAACGGT+TGG 0.505234 3_2:+86778230 Msa0434030:CDS
GGCAAGGTCGTACTAAATAC+AGG 0.506147 3_2:-86782513 None:intergenic
TTATTCATGCTGCTTTGGAT+AGG 0.506168 3_2:+86779242 Msa0434030:CDS
ATACACAAATGTTAAAATCC+CGG 0.506834 3_2:-86783013 None:intergenic
GGCTGCTAGTAAGGTTAAGA+AGG 0.508957 3_2:+86778121 Msa0434030:CDS
CTTTGCAAGAATGGCAAGGA+GGG 0.509853 3_2:-86780509 None:intergenic
GCTACCCTCCATGCATGCTA+TGG 0.509945 3_2:+86780619 Msa0434030:CDS
TATTGGGATGGGCAGAGAAA+AGG 0.510276 3_2:+86779695 Msa0434030:CDS
AAATGAGAGATAATAAAGAA+AGG 0.510499 3_2:+86777647 Msa0434030:five_prime_UTR
GCGAATCATAAATGAAACTC+TGG 0.511182 3_2:+86781276 Msa0434030:CDS
AGTTGCTGCATTAGCTCAAG+TGG 0.511277 3_2:-86779079 None:intergenic
GAGCTTCTGTCTGATGCTGA+TGG 0.511404 3_2:+86779589 Msa0434030:CDS
TGCAAAGGATGTAGGCAGCT+TGG 0.511464 3_2:+86780525 Msa0434030:CDS
ATTCCTTCAAGACACGCAGC+TGG 0.512629 3_2:-86781819 None:intergenic
GGAAGCAATGCAGGATGCAT+TGG 0.513711 3_2:-86781322 None:intergenic
GGAGGGCATTGTCTCTTTAG+GGG 0.514556 3_2:+86779765 Msa0434030:CDS
CATTTATTCTTGCCTCACTT+CGG 0.517397 3_2:-86782651 None:intergenic
AACAGAGATTATGATACGTC+TGG 0.518236 3_2:-86779516 None:intergenic
ATCAGTATACATGCAAAACC+CGG 0.518412 3_2:+86782994 Msa0434030:three_prime_UTR
AATGCAGATAAATTACCTGC+TGG 0.519607 3_2:-86782535 None:intergenic
GTGAGGCAAGAATAAATGTT+GGG 0.520078 3_2:+86782656 Msa0434030:three_prime_UTR
GCCATTCTTGCAAAGGATGT+AGG 0.520093 3_2:+86780517 Msa0434030:CDS
TGGAGAAAGCAGACTCAAGC+AGG 0.520288 3_2:+86780455 Msa0434030:CDS
GCCAGTAAGCACCAAGCCCT+TGG 0.520404 3_2:-86782614 None:intergenic
ACAGAAGCTCCAAATCCATC+TGG 0.522010 3_2:-86779576 None:intergenic
TCTGGTTCTAAGAAGAGTCC+TGG 0.522127 3_2:+86778167 Msa0434030:CDS
AAAGGGGAAGGATAGACCTC+AGG 0.522716 3_2:-86782208 None:intergenic
AACCTGTCTATTATTTCAGA+AGG 0.523873 3_2:-86782176 None:intergenic
AATAATGTATTTGGATCAGA+TGG 0.524578 3_2:-86782344 None:intergenic
GAAGGAAGATCGTCGGCGGT+AGG 0.526763 3_2:-86777894 None:intergenic
CTTGCAAATAGGTCGTATGA+TGG 0.527450 3_2:+86779325 Msa0434030:CDS
TTATGGGATAGTTTGTATGT+CGG 0.529790 3_2:+86781900 Msa0434030:CDS
TCGTTTCAATTTCCCCTGAC+CGG 0.532155 3_2:-86778216 None:intergenic
GAGGTATTCATCGGAGAGGT+TGG 0.535473 3_2:-86777937 None:intergenic
CCTTGTGCAGATAGCTGTTG+AGG 0.535897 3_2:+86780732 Msa0434030:CDS
ACTCGTTTCCATAGCATGCA+TGG 0.536398 3_2:-86780627 None:intergenic
GTTAAGAGCTGCAGACCAGT+TGG 0.536461 3_2:+86780702 Msa0434030:CDS
ATTTGTTGCCACTGGCCAGA+TGG 0.538861 3_2:+86779561 Msa0434030:CDS
AGTTATTGGAATGGCAAGCT+GGG 0.539919 3_2:+86782460 Msa0434030:three_prime_UTR
ACGTCTCACACGCGAATCCA+TGG 0.540350 3_2:-86778288 None:intergenic
AATACTTTGCAGTGGATCCT+GGG 0.540872 3_2:+86781690 Msa0434030:CDS
CCGAGTCAGAACTCGCCGCT+TGG 0.541782 3_2:+86778074 Msa0434030:CDS
TCTGTATCCGATCGATGTTA+CGG 0.541889 3_2:+86777700 Msa0434030:five_prime_UTR
GATGAGGGTTTCTGAAGCCA+TGG 0.541906 3_2:+86778271 Msa0434030:CDS
CATTGACTTCGATATTGGGA+TGG 0.544223 3_2:+86779683 Msa0434030:CDS
TGGAACAAATCAAGAAGACC+TGG 0.545660 3_2:+86779476 Msa0434030:CDS
TGTTGATCAAGCTTTACTAC+CGG 0.548387 3_2:+86782557 Msa0434030:three_prime_UTR
GGCATTATCTTTAGCGACGG+TGG 0.550233 3_2:-86777864 None:intergenic
GAAAGTTGACCGAGTGGGGA+AGG 0.550378 3_2:-86777912 None:intergenic
TCTTGGAATGGCCTAATGAA+AGG 0.551434 3_2:-86777818 None:intergenic
TCAAGAAGAGTATGGATGGA+TGG 0.554654 3_2:-86777750 None:intergenic
TTGAGAACTAGTTATTGGAA+TGG 0.554659 3_2:+86782451 Msa0434030:three_prime_UTR
CTCTTCTTAGAACCAGAACC+AGG 0.557153 3_2:-86778161 None:intergenic
GCAGAACCAGAACCAGAACC+AGG 0.560315 3_2:-86778185 None:intergenic
AATACAATGAATGGCAGAAG+AGG 0.561870 3_2:+86779131 Msa0434030:CDS
TTCTCAGAAGAGAAACTCGC+AGG 0.563521 3_2:+86781614 Msa0434030:CDS
CTATTGGCTCAAAATTTCAA+GGG 0.564727 3_2:+86781562 Msa0434030:CDS
GTATTCATCGGAGAGGTTGG+TGG 0.564947 3_2:-86777934 None:intergenic
ATTGCACCCTCTGCTTCGTA+AGG 0.565577 3_2:-86780805 None:intergenic
TGAGCTAATGCAGCAACTCA+AGG 0.568356 3_2:+86779084 Msa0434030:CDS
ATTCATGTCACTGGGCAGAT+GGG 0.568585 3_2:+86779359 Msa0434030:CDS
AGACATATAAATCTTCTGCC+AGG 0.568965 3_2:+86782282 Msa0434030:CDS
GCCTCATTGAGCAGTTTAGA+CGG 0.570661 3_2:+86782249 Msa0434030:CDS
GGAAGATCGTCGGCGGTAGG+CGG 0.571136 3_2:-86777891 None:intergenic
TTGCAAGAATGGCAAGGAGG+GGG 0.571275 3_2:-86780507 None:intergenic
TTTCACTACACCGAGAACAT+TGG 0.574222 3_2:+86782591 Msa0434030:three_prime_UTR
ATGCAGATAAATTACCTGCT+GGG 0.575094 3_2:-86782534 None:intergenic
TTGTTTGTATTGCTTGCTGG+AGG 0.576276 3_2:+86782059 Msa0434030:CDS
ATTGACTTCGATATTGGGAT+GGG 0.578379 3_2:+86779684 Msa0434030:CDS
AGTGAGGCAAGAATAAATGT+TGG 0.578710 3_2:+86782655 Msa0434030:three_prime_UTR
TCATAAATCCGGAGATTCAG+AGG 0.580170 3_2:-86779385 None:intergenic
GAAGAATAACGAGTCCATGC+AGG 0.580172 3_2:+86779279 Msa0434030:CDS
TAGATGCCTTCAATATTATG+TGG 0.580596 3_2:+86781366 Msa0434030:CDS
ATAGTGCATCTTGTCAGTGC+CGG 0.582027 3_2:-86781543 None:intergenic
GCACCCTCTGCTTCGTAAGG+AGG 0.582465 3_2:-86780802 None:intergenic
GATTCAGTGGACAGTGATGA+TGG 0.583618 3_2:+86780754 Msa0434030:CDS
TTCGCATAAATACTTTGCAG+TGG 0.584932 3_2:+86781682 Msa0434030:CDS
TGGATAGGCCCATCGAAACC+GGG 0.585233 3_2:+86779257 Msa0434030:CDS
GATAAATTACCTGCTGGGCA+AGG 0.587039 3_2:-86782529 None:intergenic
TACAAACAAGAATCCATCAA+AGG 0.587937 3_2:-86782045 None:intergenic
TCTCACTGATTCATGTCACT+GGG 0.588827 3_2:+86779351 Msa0434030:CDS
TGGTGGAAAGTTGACCGAGT+GGG 0.590747 3_2:-86777917 None:intergenic
AAGGGGAAGGATAGACCTCA+GGG 0.591323 3_2:-86782207 None:intergenic
GCAGAGTTGGATTTATCCAA+AGG 0.592259 3_2:-86779199 None:intergenic
GATAGCTGTTGAGGATTCAG+TGG 0.593196 3_2:+86780741 Msa0434030:CDS
GTTCAATCCAAGTATTCCCC+AGG 0.593786 3_2:-86779494 None:intergenic
GGAACAAATCAAGAAGACCT+GGG 0.600803 3_2:+86779477 Msa0434030:CDS
CCAGAACATCAAATTCACCC+AGG 0.604022 3_2:-86781707 None:intergenic
TGATAGAAATCTGCAGCAAG+AGG 0.604169 3_2:+86780885 Msa0434030:CDS
ACCAGAAGAGGTTCGACATG+CGG 0.604617 3_2:-86777988 None:intergenic
AGCTTATGAGGAATCAGATG+AGG 0.607480 3_2:+86778255 Msa0434030:CDS
TCTGTGTCGGTCCTGAAAAG+GGG 0.608220 3_2:-86782224 None:intergenic
CCCCACTGTCCGGAAGTTGG+AGG 0.609288 3_2:-86782320 None:intergenic
ACTGAGAGGCTTACCAGAAG+AGG 0.611640 3_2:-86778000 None:intergenic
TCAAGCTTTACTACCGGACA+TGG 0.611931 3_2:+86782563 Msa0434030:three_prime_UTR
GGTGGAAAGTTGACCGAGTG+GGG 0.612431 3_2:-86777916 None:intergenic
ACAGCAAGACCTGCTGCCAA+AGG 0.613633 3_2:-86780595 None:intergenic
CCAAGCGGCGAGTTCTGACT+CGG 0.613768 3_2:-86778074 None:intergenic
TGGAAACGTTGAAACTATGG+AGG 0.615215 3_2:+86779747 Msa0434030:CDS
TTTGGCAGCAGGTCTTGCTG+TGG 0.615431 3_2:+86780597 Msa0434030:CDS
TCAGTATACATGCAAAACCC+GGG 0.618141 3_2:+86782995 Msa0434030:three_prime_UTR
GGTGGCATTATCTTTAGCGA+CGG 0.618164 3_2:-86777867 None:intergenic
TGGAAGAAGGATTGAGTCTG+TGG 0.618167 3_2:+86779051 Msa0434030:CDS
AGTTAAGGTGAGGTATTCAT+CGG 0.619093 3_2:-86777946 None:intergenic
TACACCGAGAACATTGGCCA+AGG 0.619462 3_2:+86782597 Msa0434030:three_prime_UTR
TCAGTCCAATACTCAAGAGA+TGG 0.621303 3_2:+86780569 Msa0434030:CDS
TACCTCCAACTTCCGGACAG+TGG 0.623157 3_2:+86782318 Msa0434030:CDS
TTTGCAAGAATGGCAAGGAG+GGG 0.623362 3_2:-86780508 None:intergenic
TTAACACTTGAACAGCATCA+GGG 0.623968 3_2:-86780684 None:intergenic
CTCCAAATCCATCTGGCCAG+TGG 0.625417 3_2:-86779569 None:intergenic
GCCAAAGCTAAATCTGGCTG+TGG 0.626097 3_2:+86781388 Msa0434030:CDS
GAAAGCAGACTCAAGCAGGA+GGG 0.626703 3_2:+86780459 Msa0434030:CDS
TGTCGGTCCTGAAAAGGGGA+AGG 0.627708 3_2:-86782220 None:intergenic
TTTATGCGAACACAGAGTTG+TGG 0.627937 3_2:-86781669 None:intergenic
CCTTTGCAAGAATGGCAAGG+AGG 0.631775 3_2:-86780510 None:intergenic
GCTGCTACCGTAACATCGAT+CGG 0.635224 3_2:-86777707 None:intergenic
CCTCAACAGCTATCTGCACA+AGG 0.635306 3_2:-86780732 None:intergenic
TCCGTCTAAACTGCTCAATG+AGG 0.636700 3_2:-86782250 None:intergenic
GAGGACTCTCAAGGTTCTGG+AGG 0.638648 3_2:+86779150 Msa0434030:CDS
GCTTATGAGGAATCAGATGA+GGG 0.638968 3_2:+86778256 Msa0434030:CDS
AGCGGCTAAGATATTGCTTG+AGG 0.639941 3_2:+86779792 Msa0434030:CDS
CTCGCAGGTTGCAACAAATG+GGG 0.641472 3_2:+86781629 Msa0434030:CDS
GTTTCCATAGCATGCATGGA+GGG 0.644542 3_2:-86780623 None:intergenic
ACAAACTATCCCATAAAACA+TGG 0.645581 3_2:-86781893 None:intergenic
AAAGGATTCACAGATCATAG+AGG 0.649229 3_2:+86782103 Msa0434030:CDS
TTGCTTCCTGAAGTGATGCA+TGG 0.649727 3_2:+86781337 Msa0434030:CDS
CATCCTTTGCAAGAATGGCA+AGG 0.651566 3_2:-86780513 None:intergenic
AGAAAGCAGACTCAAGCAGG+AGG 0.652723 3_2:+86780458 Msa0434030:CDS
AGAACTACGAAGAACCTGCA+TGG 0.652762 3_2:-86779293 None:intergenic
TAACACTTGAACAGCATCAG+GGG 0.654589 3_2:-86780683 None:intergenic
ATGCCTCCTTACGAAGCAGA+GGG 0.655742 3_2:+86780799 Msa0434030:CDS
TTTCTTTCGAGTCCGAAGTG+AGG 0.656193 3_2:+86782639 Msa0434030:three_prime_UTR
ATATATCTAATGAATATCGT+CGG 0.658453 3_2:+86779815 Msa0434030:CDS
TGTCTCTTTAGGGGTAGCAG+CGG 0.659641 3_2:+86779774 Msa0434030:CDS
ATGGCAGAAGAGGACTCTCA+AGG 0.662747 3_2:+86779141 Msa0434030:CDS
CGTTTCCATAGCATGCATGG+AGG 0.666154 3_2:-86780624 None:intergenic
AATGCCTCCTTACGAAGCAG+AGG 0.667401 3_2:+86780798 Msa0434030:CDS
TCTCGTAGGCAGTTAAGGTG+AGG 0.668289 3_2:-86777956 None:intergenic
GAGTGGGGAAGGAAGATCGT+CGG 0.669282 3_2:-86777901 None:intergenic
AATAGACAGACTGAAAGACT+GGG 0.674683 3_2:+86780861 Msa0434030:CDS
ACACCGAGAACATTGGCCAA+GGG 0.677940 3_2:+86782598 Msa0434030:three_prime_UTR
GGAAACGTTGAAACTATGGA+GGG 0.678419 3_2:+86779748 Msa0434030:CDS
GAAGATTAGAGATGTCTCTG+TGG 0.679006 3_2:+86782746 Msa0434030:three_prime_UTR
AGGTGAGGTATTCATCGGAG+AGG 0.681050 3_2:-86777941 None:intergenic
AAGAAGGATTGAGTCTGTGG+TGG 0.682385 3_2:+86779054 Msa0434030:CDS
AGGTAATGGAATTCTAGACC+TGG 0.684017 3_2:-86782300 None:intergenic
TATCTAATGAATATCGTCGG+AGG 0.690045 3_2:+86779818 Msa0434030:CDS
GGATCAATCCTGGAAGACGA+GGG 0.691955 3_2:-86781927 None:intergenic
AACGATCTCTGAATACCAAG+CGG 0.693612 3_2:-86778089 None:intergenic
TTAGCAATTGATGAACTGAG+AGG 0.694391 3_2:-86778014 None:intergenic
GAACAAATCAAGAAGACCTG+GGG 0.694702 3_2:+86779478 Msa0434030:CDS
AGTCCACAAGCAAATCAGGA+AGG 0.695524 3_2:+86781226 Msa0434030:CDS
TAAGGGACAACACAATCCAG+AGG 0.700914 3_2:-86782887 None:intergenic
AATCCAACTCTGCTGCGCAG+CGG 0.701214 3_2:+86779209 Msa0434030:CDS
AGGAATTCAGCAGCTCTGTG+AGG 0.702466 3_2:+86781836 Msa0434030:CDS
TTGGTGGAAAGTTGACCGAG+TGG 0.703268 3_2:-86777918 None:intergenic
TGGGGAAGGAAGATCGTCGG+CGG 0.720118 3_2:-86777898 None:intergenic
TGCGGCGACGAAGATCTCGT+AGG 0.722455 3_2:-86777970 None:intergenic
ACAGGTTTGCAACTACCCTG+AGG 0.728126 3_2:+86782192 Msa0434030:CDS
CCTCCAACTTCCGGACAGTG+GGG 0.745165 3_2:+86782320 Msa0434030:CDS
TCAGTGGACAGTGATGATGG+TGG 0.776008 3_2:+86780757 Msa0434030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTCAATATTCAATTAT+TGG + chr3_2:86778428-86778447 Msa0434030:intron 10.0%
!! TTTAATTATTCTTTAGTAAA+AGG + chr3_2:86779944-86779963 Msa0434030:intron 10.0%
!! TAAAATAAAAAAATCTCAAA+AGG - chr3_2:86782809-86782828 None:intergenic 10.0%
!!! AATATTCTTTTAGTTGATTA+GGG + chr3_2:86781090-86781109 Msa0434030:intron 15.0%
!!! AAAGAATAATTACTCTTTTA+CGG + chr3_2:86781733-86781752 Msa0434030:CDS 15.0%
!!! ATTTTCGATTCATTAATTTT+TGG + chr3_2:86782724-86782743 Msa0434030:three_prime_UTR 15.0%
!! AAATGAGAGATAATAAAGAA+AGG + chr3_2:86777647-86777666 Msa0434030:five_prime_UTR 20.0%
!!! GATGATTTTTCGTTTTTATT+TGG + chr3_2:86778395-86778414 Msa0434030:intron 20.0%
!!! TCAAAAGCTCTAATTAATTT+TGG - chr3_2:86778644-86778663 None:intergenic 20.0%
!! AATAAACATTTATACACACA+AGG - chr3_2:86778906-86778925 None:intergenic 20.0%
!! TTGTGTGTATAAATGTTTAT+TGG + chr3_2:86778905-86778924 Msa0434030:intron 20.0%
!!! TTTTACTTTTTAGTTGAACA+TGG + chr3_2:86778991-86779010 Msa0434030:intron 20.0%
!! ATATATCTAATGAATATCGT+CGG + chr3_2:86779815-86779834 Msa0434030:CDS 20.0%
!!! TGCATGTATTTTACTTATAA+AGG + chr3_2:86780096-86780115 Msa0434030:intron 20.0%
!! TATAAACCAAGAAATTTAAC+TGG - chr3_2:86780203-86780222 None:intergenic 20.0%
!! GTTAAATTTCTTGGTTTATA+AGG + chr3_2:86780203-86780222 Msa0434030:intron 20.0%
!!! TTGTTACTTGAAAAAATGTT+AGG + chr3_2:86780961-86780980 Msa0434030:intron 20.0%
!!! TGTTACTTGAAAAAATGTTA+GGG + chr3_2:86780962-86780981 Msa0434030:intron 20.0%
!!! CAATATTCTTTTAGTTGATT+AGG + chr3_2:86781089-86781108 Msa0434030:intron 20.0%
!!! AATAGTTTAGCTCTTATATA+TGG + chr3_2:86781429-86781448 Msa0434030:intron 20.0%
!! ATCTTTAATAACTGTATATG+TGG + chr3_2:86781453-86781472 Msa0434030:intron 20.0%
!!! TGTTTTTTATTCCAATATTC+AGG + chr3_2:86781492-86781511 Msa0434030:intron 20.0%
!!! AATTTTTTCATGAACATTGT+CGG - chr3_2:86781991-86782010 None:intergenic 20.0%
!! AAAACACGTAATAATGTATT+TGG - chr3_2:86782356-86782375 None:intergenic 20.0%
!! AAAAAATCTCAAAAGGTAAA+AGG - chr3_2:86782802-86782821 None:intergenic 20.0%
!! TTCATACTAGTGATAAATAA+GGG - chr3_2:86782907-86782926 None:intergenic 20.0%
!!! TACTTTTTCAATCAACAAAT+AGG - chr3_2:86782955-86782974 None:intergenic 20.0%
!! TGTATACTGATAAACAAATA+AGG - chr3_2:86782985-86783004 None:intergenic 20.0%
!! TTTCTTCTTCTTTTCTTCAA+TGG + chr3_2:86777776-86777795 Msa0434030:exon 25.0%
! AGAATGACTATTATTGTTGT+TGG - chr3_2:86778048-86778067 None:intergenic 25.0%
! GAAAAATCATCAACAAATTC+TGG - chr3_2:86778386-86778405 None:intergenic 25.0%
! ACTTAAAGTAAGTGTATGTT+TGG + chr3_2:86778601-86778620 Msa0434030:intron 25.0%
! GGTTAAACAACAAATTTGAA+TGG - chr3_2:86778684-86778703 None:intergenic 25.0%
! GGTTAAACAACAAATTTGAA+TGG - chr3_2:86778684-86778703 None:intergenic 25.0%
! ATCAACAAGAATACAATGAA+TGG + chr3_2:86779122-86779141 Msa0434030:CDS 25.0%
!!! ACTCAAAATTTTGGAATACT+CGG - chr3_2:86779659-86779678 None:intergenic 25.0%
!! CAATGTAGAACTCAAAATTT+TGG - chr3_2:86779668-86779687 None:intergenic 25.0%
!!! TTGGAATTTGTTTTTGACTT+TGG + chr3_2:86780024-86780043 Msa0434030:intron 25.0%
! ATTTAACTGGCATGTAAATA+TGG - chr3_2:86780190-86780209 None:intergenic 25.0%
! ATAAATAACATGCTATTGCA+CGG - chr3_2:86780301-86780320 None:intergenic 25.0%
!! TGCAATAGCATGTTATTTAT+GGG + chr3_2:86780301-86780320 Msa0434030:intron 25.0%
! ATTAAGTTATTGCAAACTGT+GGG + chr3_2:86781037-86781056 Msa0434030:intron 25.0%
! TGATTAATTTCTGTGTATTC+TGG + chr3_2:86781137-86781156 Msa0434030:intron 25.0%
! AATAATGTATTTGGATCAGA+TGG - chr3_2:86782347-86782366 None:intergenic 25.0%
! AATGCTGTTAAAGTTTCTTA+GGG - chr3_2:86782433-86782452 None:intergenic 25.0%
! GTTCATACTAGTGATAAATA+AGG - chr3_2:86782908-86782927 None:intergenic 25.0%
! ACTATTATTGTTGTTGGAAG+AGG - chr3_2:86778042-86778061 None:intergenic 30.0%
ATTTCAACAAACACTAGCAT+TGG - chr3_2:86778530-86778549 None:intergenic 30.0%
TTGACTAGATTCATTCCATA+AGG + chr3_2:86778554-86778573 Msa0434030:intron 30.0%
!!! AATTTTGGCTACTCAAAAAG+TGG - chr3_2:86778629-86778648 None:intergenic 30.0%
TTTGTACATTCACGTAAATG+CGG - chr3_2:86778706-86778725 None:intergenic 30.0%
TAGATACATTCACGTAAAAG+CGG - chr3_2:86778786-86778805 None:intergenic 30.0%
! GATTTATCCAAAGGTATGTA+AGG - chr3_2:86779193-86779212 None:intergenic 30.0%
!! GTAGAAGCATTTCATAAATC+CGG - chr3_2:86779399-86779418 None:intergenic 30.0%
!! TGAAGATTTTGATGAGCTAA+TGG + chr3_2:86779456-86779475 Msa0434030:CDS 30.0%
! ATCATAATCTCTGTTTTACG+TGG + chr3_2:86779524-86779543 Msa0434030:CDS 30.0%
! TCATAATCTCTGTTTTACGT+GGG + chr3_2:86779525-86779544 Msa0434030:CDS 30.0%
!! TTCTACATTGACTTCGATAT+TGG + chr3_2:86779678-86779697 Msa0434030:CDS 30.0%
!! TCTACATTGACTTCGATATT+GGG + chr3_2:86779679-86779698 Msa0434030:CDS 30.0%
TGTACGTTTCAATTCTTTCT+CGG - chr3_2:86779867-86779886 None:intergenic 30.0%
AAAGAATTGAAACGTACATC+AGG + chr3_2:86779869-86779888 Msa0434030:CDS 30.0%
GAATGCTAAGAGATGTTTAA+AGG - chr3_2:86780050-86780069 None:intergenic 30.0%
! TGCTACACAAACTAGAATTT+TGG + chr3_2:86780135-86780154 Msa0434030:intron 30.0%
! GCTACACAAACTAGAATTTT+GGG + chr3_2:86780136-86780155 Msa0434030:intron 30.0%
TACATGCCAGTTAAATTTCT+TGG + chr3_2:86780194-86780213 Msa0434030:intron 30.0%
! GTGCAATAGCATGTTATTTA+TGG + chr3_2:86780300-86780319 Msa0434030:intron 30.0%
TTGCAAATCTCGTGAAAATA+TGG + chr3_2:86780827-86780846 Msa0434030:CDS 30.0%
TCACAATGAATATCATCAAC+GGG - chr3_2:86780939-86780958 None:intergenic 30.0%
GTCACAATGAATATCATCAA+CGG - chr3_2:86780940-86780959 None:intergenic 30.0%
CATTAAGTTATTGCAAACTG+TGG + chr3_2:86781036-86781055 Msa0434030:intron 30.0%
ACTATGTTAGTTCGACATAA+AGG - chr3_2:86781183-86781202 None:intergenic 30.0%
TTATTGTGATATCCTAGCTT+TGG + chr3_2:86781203-86781222 Msa0434030:intron 30.0%
TAGATGCCTTCAATATTATG+TGG + chr3_2:86781366-86781385 Msa0434030:CDS 30.0%
TATTTCGAGATCCTGAATAT+TGG - chr3_2:86781506-86781525 None:intergenic 30.0%
TACATTTATTCCAACAATGC+CGG + chr3_2:86781524-86781543 Msa0434030:CDS 30.0%
!! ACTATTGGCTCAAAATTTCA+AGG + chr3_2:86781561-86781580 Msa0434030:CDS 30.0%
!! CTATTGGCTCAAAATTTCAA+GGG + chr3_2:86781562-86781581 Msa0434030:CDS 30.0%
GTTTGAAAAATCTTCTTCTC+GGG - chr3_2:86781772-86781791 None:intergenic 30.0%
CGTTTGAAAAATCTTCTTCT+CGG - chr3_2:86781773-86781792 None:intergenic 30.0%
!! CGAGAAGAAGATTTTTCAAA+CGG + chr3_2:86781771-86781790 Msa0434030:CDS 30.0%
ATAAAACATGGCTTAGATCA+TGG - chr3_2:86781884-86781903 None:intergenic 30.0%
! ATGATCTAAGCCATGTTTTA+TGG + chr3_2:86781883-86781902 Msa0434030:CDS 30.0%
! TGATCTAAGCCATGTTTTAT+GGG + chr3_2:86781884-86781903 Msa0434030:CDS 30.0%
ACAAACTATCCCATAAAACA+TGG - chr3_2:86781896-86781915 None:intergenic 30.0%
! TTATGGGATAGTTTGTATGT+CGG + chr3_2:86781900-86781919 Msa0434030:CDS 30.0%
TACAAACAAGAATCCATCAA+AGG - chr3_2:86782048-86782067 None:intergenic 30.0%
! GGATGATTTCAAAGTTCTAA+AGG + chr3_2:86782124-86782143 Msa0434030:CDS 30.0%
AACCTGTCTATTATTTCAGA+AGG - chr3_2:86782179-86782198 None:intergenic 30.0%
CAATGCTGTTAAAGTTTCTT+AGG - chr3_2:86782434-86782453 None:intergenic 30.0%
TTGAGAACTAGTTATTGGAA+TGG + chr3_2:86782451-86782470 Msa0434030:three_prime_UTR 30.0%
! TTAACCACCTTTTTGCAAAT+AGG - chr3_2:86782699-86782718 None:intergenic 30.0%
! ATTCTTTTGATGAATTCCTC+TGG + chr3_2:86782871-86782890 Msa0434030:three_prime_UTR 30.0%
AGAAAGAGTCAAGAAGAGTA+TGG - chr3_2:86777761-86777780 None:intergenic 35.0%
! CTCTTTAGAGACCTTTCATT+AGG + chr3_2:86777807-86777826 Msa0434030:CDS 35.0%
TTGAATCTCTTCTCTTGGAA+TGG - chr3_2:86777833-86777852 None:intergenic 35.0%
TGTTGTTGAATCTCTTCTCT+TGG - chr3_2:86777838-86777857 None:intergenic 35.0%
! AGTTAAGGTGAGGTATTCAT+CGG - chr3_2:86777949-86777968 None:intergenic 35.0%
TTAGCAATTGATGAACTGAG+AGG - chr3_2:86778017-86778036 None:intergenic 35.0%
TCAGAGATCGTTAACTTCTA+CGG + chr3_2:86778100-86778119 Msa0434030:CDS 35.0%
! AGTAAGGTTAAGAAGGCTTT+TGG + chr3_2:86778128-86778147 Msa0434030:CDS 35.0%
GAAATTGAAACGACCGTTAA+CGG + chr3_2:86778226-86778245 Msa0434030:CDS 35.0%
!!! CTGCTTTTTTGATCTGCTTT+TGG + chr3_2:86778461-86778480 Msa0434030:intron 35.0%
ACAACTTAACGAACACCTTA+TGG - chr3_2:86778572-86778591 None:intergenic 35.0%
TTGTACATTCACGTAAATGC+GGG - chr3_2:86778705-86778724 None:intergenic 35.0%
AGATACATTCACGTAAAAGC+GGG - chr3_2:86778785-86778804 None:intergenic 35.0%
! GATTTCGAGTGAATTGATTC+TGG - chr3_2:86778843-86778862 None:intergenic 35.0%
GGAATAATTAAGCGTGTGTT+TGG - chr3_2:86778885-86778904 None:intergenic 35.0%
ATTTGCCTTGGGATTGAAAA+GGG + chr3_2:86778951-86778970 Msa0434030:intron 35.0%
! TAACTTGTGAACTTCATTGC+AGG + chr3_2:86779027-86779046 Msa0434030:intron 35.0%
AATACAATGAATGGCAGAAG+AGG + chr3_2:86779131-86779150 Msa0434030:CDS 35.0%
TTTGCATCCTTACATACCTT+TGG + chr3_2:86779183-86779202 Msa0434030:CDS 35.0%
!! TTATTCATGCTGCTTTGGAT+AGG + chr3_2:86779242-86779261 Msa0434030:CDS 35.0%
AACAGAGATTATGATACGTC+TGG - chr3_2:86779519-86779538 None:intergenic 35.0%
! TTTGGAATACTCGGAATCTT+TGG - chr3_2:86779650-86779669 None:intergenic 35.0%
! ATTGACTTCGATATTGGGAT+GGG + chr3_2:86779684-86779703 Msa0434030:CDS 35.0%
! TACCATGAAACTTTTGATCG+TGG + chr3_2:86779727-86779746 Msa0434030:CDS 35.0%
TTCCACGATCAAAAGTTTCA+TGG - chr3_2:86779732-86779751 None:intergenic 35.0%
TATCTAATGAATATCGTCGG+AGG + chr3_2:86779818-86779837 Msa0434030:CDS 35.0%
GTACGTTTCAATTCTTTCTC+GGG - chr3_2:86779866-86779885 None:intergenic 35.0%
CAGACTATATAAACTTGCCT+GGG - chr3_2:86779917-86779936 None:intergenic 35.0%
ACAGACTATATAAACTTGCC+TGG - chr3_2:86779918-86779937 None:intergenic 35.0%
! TAAGGCAAACAAGCTTTATC+AGG + chr3_2:86780221-86780240 Msa0434030:intron 35.0%
! TTGTTGAGTTGTGCAAGTAA+CGG + chr3_2:86780244-86780263 Msa0434030:intron 35.0%
GTTTGATCATGAACAAACCT+AGG + chr3_2:86780270-86780289 Msa0434030:intron 35.0%
! TTTTGCTGCTGCATAGATAA+TGG + chr3_2:86780435-86780454 Msa0434030:intron 35.0%
GAGTTGAAGCAATTCATTTC+AGG + chr3_2:86780646-86780665 Msa0434030:CDS 35.0%
TTAACACTTGAACAGCATCA+GGG - chr3_2:86780687-86780706 None:intergenic 35.0%
AATAGACAGACTGAAAGACT+GGG + chr3_2:86780861-86780880 Msa0434030:CDS 35.0%
! AGTCTTATGTTCTCTTGAGT+TGG - chr3_2:86781007-86781026 None:intergenic 35.0%
GCGAATCATAAATGAAACTC+TGG + chr3_2:86781276-86781295 Msa0434030:CDS 35.0%
CTTTGGCCACATAATATTGA+AGG - chr3_2:86781375-86781394 None:intergenic 35.0%
GCTCAAAATTTCAAGGGTTT+GGG + chr3_2:86781568-86781587 Msa0434030:CDS 35.0%
! GAGTTTCTCTTCTGAGAATT+TGG - chr3_2:86781612-86781631 None:intergenic 35.0%
TTCGCATAAATACTTTGCAG+TGG + chr3_2:86781682-86781701 Msa0434030:CDS 35.0%
ATAATGAGAGCTTCCTTTGA+TGG + chr3_2:86782032-86782051 Msa0434030:CDS 35.0%
! TTCTTGTTTGTATTGCTTGC+TGG + chr3_2:86782056-86782075 Msa0434030:CDS 35.0%
TATGATCTGTGAATCCTTTC+GGG - chr3_2:86782102-86782121 None:intergenic 35.0%
CTATGATCTGTGAATCCTTT+CGG - chr3_2:86782103-86782122 None:intergenic 35.0%
AAAGGATTCACAGATCATAG+AGG + chr3_2:86782103-86782122 Msa0434030:CDS 35.0%
!!! AAGTTCTAAAGGAGCTGTTT+TGG + chr3_2:86782135-86782154 Msa0434030:CDS 35.0%
!!! AGTTCTAAAGGAGCTGTTTT+GGG + chr3_2:86782136-86782155 Msa0434030:CDS 35.0%
!! TGCCTTCTGAAATAATAGAC+AGG + chr3_2:86782174-86782193 Msa0434030:CDS 35.0%
AGACATATAAATCTTCTGCC+AGG + chr3_2:86782282-86782301 Msa0434030:CDS 35.0%
! CAGCATTGAGAACTAGTTAT+TGG + chr3_2:86782446-86782465 Msa0434030:three_prime_UTR 35.0%
ATGCAGATAAATTACCTGCT+GGG - chr3_2:86782537-86782556 None:intergenic 35.0%
AATGCAGATAAATTACCTGC+TGG - chr3_2:86782538-86782557 None:intergenic 35.0%
TGTTGATCAAGCTTTACTAC+CGG + chr3_2:86782557-86782576 Msa0434030:three_prime_UTR 35.0%
CATTTATTCTTGCCTCACTT+CGG - chr3_2:86782654-86782673 None:intergenic 35.0%
AGTGAGGCAAGAATAAATGT+TGG + chr3_2:86782655-86782674 Msa0434030:three_prime_UTR 35.0%
GTGAGGCAAGAATAAATGTT+GGG + chr3_2:86782656-86782675 Msa0434030:three_prime_UTR 35.0%
ACACAAGCCTATTTGCAAAA+AGG + chr3_2:86782689-86782708 Msa0434030:three_prime_UTR 35.0%
AGTATGAACTGCAGTTATAC+AGG + chr3_2:86782919-86782938 Msa0434030:three_prime_UTR 35.0%
ATCAGTATACATGCAAAACC+CGG + chr3_2:86782994-86783013 Msa0434030:three_prime_UTR 35.0%
TCTGTATCCGATCGATGTTA+CGG + chr3_2:86777700-86777719 Msa0434030:five_prime_UTR 40.0%
! TCAAGAAGAGTATGGATGGA+TGG - chr3_2:86777753-86777772 None:intergenic 40.0%
! AGAGTCAAGAAGAGTATGGA+TGG - chr3_2:86777757-86777776 None:intergenic 40.0%
TCTTGGAATGGCCTAATGAA+AGG - chr3_2:86777821-86777840 None:intergenic 40.0%
AACGATCTCTGAATACCAAG+CGG - chr3_2:86778092-86778111 None:intergenic 40.0%
!!! GCTTTTGGTTTGAAATCTCC+TGG + chr3_2:86778143-86778162 Msa0434030:CDS 40.0%
AGCTTATGAGGAATCAGATG+AGG + chr3_2:86778255-86778274 Msa0434030:CDS 40.0%
GCTTATGAGGAATCAGATGA+GGG + chr3_2:86778256-86778275 Msa0434030:CDS 40.0%
TGACTACACTAGATTTGCCT+TGG + chr3_2:86778939-86778958 Msa0434030:intron 40.0%
GACTACACTAGATTTGCCTT+GGG + chr3_2:86778940-86778959 Msa0434030:intron 40.0%
GATTTGCCTTGGGATTGAAA+AGG + chr3_2:86778950-86778969 Msa0434030:intron 40.0%
! TCTTTCCCTTTTCAATCCCA+AGG - chr3_2:86778959-86778978 None:intergenic 40.0%
TTGTGAACTTCATTGCAGGT+TGG + chr3_2:86779031-86779050 Msa0434030:intron 40.0%
GCAGAGTTGGATTTATCCAA+AGG - chr3_2:86779202-86779221 None:intergenic 40.0%
! GCAGATTATTCATGCTGCTT+TGG + chr3_2:86779237-86779256 Msa0434030:CDS 40.0%
TTATTCTTCCCGGTTTCGAT+GGG - chr3_2:86779268-86779287 None:intergenic 40.0%
CTGTCATGTCTCTTGCAAAT+AGG + chr3_2:86779314-86779333 Msa0434030:CDS 40.0%
CTTGCAAATAGGTCGTATGA+TGG + chr3_2:86779325-86779344 Msa0434030:CDS 40.0%
!! TCTCACTGATTCATGTCACT+GGG + chr3_2:86779351-86779370 Msa0434030:CDS 40.0%
TCATAAATCCGGAGATTCAG+AGG - chr3_2:86779388-86779407 None:intergenic 40.0%
TGGAACAAATCAAGAAGACC+TGG + chr3_2:86779476-86779495 Msa0434030:CDS 40.0%
GGAACAAATCAAGAAGACCT+GGG + chr3_2:86779477-86779496 Msa0434030:CDS 40.0%
GAACAAATCAAGAAGACCTG+GGG + chr3_2:86779478-86779497 Msa0434030:CDS 40.0%
!! TTTCATCGATTTGTTGCCAC+TGG + chr3_2:86779553-86779572 Msa0434030:CDS 40.0%
!! CATTGACTTCGATATTGGGA+TGG + chr3_2:86779683-86779702 Msa0434030:CDS 40.0%
TCGTGGAAACGTTGAAACTA+TGG + chr3_2:86779744-86779763 Msa0434030:CDS 40.0%
TGGAAACGTTGAAACTATGG+AGG + chr3_2:86779747-86779766 Msa0434030:CDS 40.0%
GGAAACGTTGAAACTATGGA+GGG + chr3_2:86779748-86779767 Msa0434030:CDS 40.0%
AGTAAAAGGTGACAAACTCG+AGG + chr3_2:86779958-86779977 Msa0434030:intron 40.0%
TTAAGCACTATTACCATCGC+AGG - chr3_2:86779994-86780013 None:intergenic 40.0%
GGTAATAGTGCTTAATGTGC+AGG + chr3_2:86779999-86780018 Msa0434030:intron 40.0%
AGTGCTTAATGTGCAGGAAT+TGG + chr3_2:86780005-86780024 Msa0434030:intron 40.0%
!! ATTTTGGGTGACTAAGCAAG+TGG + chr3_2:86780151-86780170 Msa0434030:intron 40.0%
!! TTTTGGGTGACTAAGCAAGT+GGG + chr3_2:86780152-86780171 Msa0434030:intron 40.0%
! TGTTGAGTTGTGCAAGTAAC+GGG + chr3_2:86780245-86780264 Msa0434030:intron 40.0%
TCAGTCCAATACTCAAGAGA+TGG + chr3_2:86780569-86780588 Msa0434030:CDS 40.0%
TAACACTTGAACAGCATCAG+GGG - chr3_2:86780686-86780705 None:intergenic 40.0%
CTTAACACTTGAACAGCATC+AGG - chr3_2:86780688-86780707 None:intergenic 40.0%
GAATAGACAGACTGAAAGAC+TGG + chr3_2:86780860-86780879 Msa0434030:CDS 40.0%
TGATAGAAATCTGCAGCAAG+AGG + chr3_2:86780885-86780904 Msa0434030:CDS 40.0%
!! TATCCTTCCTGATTTGCTTG+TGG - chr3_2:86781232-86781251 None:intergenic 40.0%
! AATGCAGGATGCATTGGTAT+TGG - chr3_2:86781319-86781338 None:intergenic 40.0%
TATGTGGCCAAAGCTAAATC+TGG + chr3_2:86781382-86781401 Msa0434030:CDS 40.0%
GGCTCAAAATTTCAAGGGTT+TGG + chr3_2:86781567-86781586 Msa0434030:CDS 40.0%
TTTATGCGAACACAGAGTTG+TGG - chr3_2:86781672-86781691 None:intergenic 40.0%
AAATACTTTGCAGTGGATCC+TGG + chr3_2:86781689-86781708 Msa0434030:CDS 40.0%
AATACTTTGCAGTGGATCCT+GGG + chr3_2:86781690-86781709 Msa0434030:CDS 40.0%
! TTGTTTGTATTGCTTGCTGG+AGG + chr3_2:86782059-86782078 Msa0434030:CDS 40.0%
!! AGGTAATGGAATTCTAGACC+TGG - chr3_2:86782303-86782322 None:intergenic 40.0%
ATTCCATTACCTCCAACTTC+CGG + chr3_2:86782311-86782330 Msa0434030:CDS 40.0%
TAGTTATTGGAATGGCAAGC+TGG + chr3_2:86782459-86782478 Msa0434030:three_prime_UTR 40.0%
AGTTATTGGAATGGCAAGCT+GGG + chr3_2:86782460-86782479 Msa0434030:three_prime_UTR 40.0%
ATGCATTCTGCTCAAATGTC+TGG + chr3_2:86782485-86782504 Msa0434030:three_prime_UTR 40.0%
TAGTGAAAAACAGCCATGTC+CGG - chr3_2:86782579-86782598 None:intergenic 40.0%
TTTCACTACACCGAGAACAT+TGG + chr3_2:86782591-86782610 Msa0434030:three_prime_UTR 40.0%
CAAGCCTATTTGCAAAAAGG+TGG + chr3_2:86782692-86782711 Msa0434030:three_prime_UTR 40.0%
GAAGATTAGAGATGTCTCTG+TGG + chr3_2:86782746-86782765 Msa0434030:three_prime_UTR 40.0%
TCAGTATACATGCAAAACCC+GGG + chr3_2:86782995-86783014 Msa0434030:three_prime_UTR 40.0%
GGTGGCATTATCTTTAGCGA+CGG - chr3_2:86777870-86777889 None:intergenic 45.0%
GAAGATCTCGTAGGCAGTTA+AGG - chr3_2:86777964-86777983 None:intergenic 45.0%
AACTTCTACGGCTGCTAGTA+AGG + chr3_2:86778112-86778131 Msa0434030:CDS 45.0%
GGCTGCTAGTAAGGTTAAGA+AGG + chr3_2:86778121-86778140 Msa0434030:CDS 45.0%
! GGTTTGAAATCTCCTGGTTC+TGG + chr3_2:86778149-86778168 Msa0434030:CDS 45.0%
CTCTTCTTAGAACCAGAACC+AGG - chr3_2:86778164-86778183 None:intergenic 45.0%
!! TCTGGTTCTAAGAAGAGTCC+TGG + chr3_2:86778167-86778186 Msa0434030:CDS 45.0%
TCTAAGAAGAGTCCTGGTTC+TGG + chr3_2:86778173-86778192 Msa0434030:CDS 45.0%
TCGTTTCAATTTCCCCTGAC+CGG - chr3_2:86778219-86778238 None:intergenic 45.0%
TTGAAACGACCGTTAACGGT+TGG + chr3_2:86778230-86778249 Msa0434030:CDS 45.0%
TGAAACGACCGTTAACGGTT+GGG + chr3_2:86778231-86778250 Msa0434030:CDS 45.0%
ATAAGCTCCCCAACCGTTAA+CGG - chr3_2:86778242-86778261 None:intergenic 45.0%
ACAGCACACTGTACATGCAT+TGG - chr3_2:86778358-86778377 None:intergenic 45.0%
! CTTCATTGCAGGTTGGAAGA+AGG + chr3_2:86779038-86779057 Msa0434030:intron 45.0%
TGGAAGAAGGATTGAGTCTG+TGG + chr3_2:86779051-86779070 Msa0434030:CDS 45.0%
AAGAAGGATTGAGTCTGTGG+TGG + chr3_2:86779054-86779073 Msa0434030:CDS 45.0%
AGTTGCTGCATTAGCTCAAG+TGG - chr3_2:86779082-86779101 None:intergenic 45.0%
TGAGCTAATGCAGCAACTCA+AGG + chr3_2:86779084-86779103 Msa0434030:CDS 45.0%
AATGCAGCAACTCAAGGCTT+CGG + chr3_2:86779090-86779109 Msa0434030:CDS 45.0%
GTTATTCTTCCCGGTTTCGA+TGG - chr3_2:86779269-86779288 None:intergenic 45.0%
CATGGACTCGTTATTCTTCC+CGG - chr3_2:86779278-86779297 None:intergenic 45.0%
GAAGAATAACGAGTCCATGC+AGG + chr3_2:86779279-86779298 Msa0434030:CDS 45.0%
AGAACTACGAAGAACCTGCA+TGG - chr3_2:86779296-86779315 None:intergenic 45.0%
!! CTCTCACTGATTCATGTCAC+TGG + chr3_2:86779350-86779369 Msa0434030:CDS 45.0%
ATTCATGTCACTGGGCAGAT+GGG + chr3_2:86779359-86779378 Msa0434030:CDS 45.0%
ATGGGATTCCTCTGAATCTC+CGG + chr3_2:86779377-86779396 Msa0434030:CDS 45.0%
AAGAAGACCTGGGGAATACT+TGG + chr3_2:86779487-86779506 Msa0434030:CDS 45.0%
GTTCAATCCAAGTATTCCCC+AGG - chr3_2:86779497-86779516 None:intergenic 45.0%
ACAGAAGCTCCAAATCCATC+TGG - chr3_2:86779579-86779598 None:intergenic 45.0%
! CTTTTGCAACTTCAGCTAGC+TGG - chr3_2:86779615-86779634 None:intergenic 45.0%
TATTGGGATGGGCAGAGAAA+AGG + chr3_2:86779695-86779714 Msa0434030:CDS 45.0%
!! ATGGAGGGCATTGTCTCTTT+AGG + chr3_2:86779763-86779782 Msa0434030:CDS 45.0%
!! TGGAGGGCATTGTCTCTTTA+GGG + chr3_2:86779764-86779783 Msa0434030:CDS 45.0%
AGCGGCTAAGATATTGCTTG+AGG + chr3_2:86779792-86779811 Msa0434030:CDS 45.0%
AGGTTTATCATCTCCTGCGA+TGG + chr3_2:86779978-86779997 Msa0434030:intron 45.0%
TTTGCAAGAATGGCAAGGAG+GGG - chr3_2:86780511-86780530 None:intergenic 45.0%
CTTTGCAAGAATGGCAAGGA+GGG - chr3_2:86780512-86780531 None:intergenic 45.0%
CATCCTTTGCAAGAATGGCA+AGG - chr3_2:86780516-86780535 None:intergenic 45.0%
GCCATTCTTGCAAAGGATGT+AGG + chr3_2:86780517-86780536 Msa0434030:CDS 45.0%
GCCTACATCCTTTGCAAGAA+TGG - chr3_2:86780521-86780540 None:intergenic 45.0%
GGATGCCATCTCTTGAGTAT+TGG - chr3_2:86780577-86780596 None:intergenic 45.0%
ACTCAAGAGATGGCATCCTT+TGG + chr3_2:86780579-86780598 Msa0434030:CDS 45.0%
GTTTCCATAGCATGCATGGA+GGG - chr3_2:86780626-86780645 None:intergenic 45.0%
ACTCGTTTCCATAGCATGCA+TGG - chr3_2:86780630-86780649 None:intergenic 45.0%
GATAGCTGTTGAGGATTCAG+TGG + chr3_2:86780741-86780760 Msa0434030:CDS 45.0%
GATTCAGTGGACAGTGATGA+TGG + chr3_2:86780754-86780773 Msa0434030:CDS 45.0%
TTGGAGTCCACAAGCAAATC+AGG + chr3_2:86781222-86781241 Msa0434030:CDS 45.0%
AGTCCACAAGCAAATCAGGA+AGG + chr3_2:86781226-86781245 Msa0434030:CDS 45.0%
CGCAGAACTTCAACAGAAGA+TGG - chr3_2:86781259-86781278 None:intergenic 45.0%
ATCACTTCAGGAAGCAATGC+AGG - chr3_2:86781334-86781353 None:intergenic 45.0%
TTGCTTCCTGAAGTGATGCA+TGG + chr3_2:86781337-86781356 Msa0434030:CDS 45.0%
! ACCACAGCCAGATTTAGCTT+TGG - chr3_2:86781392-86781411 None:intergenic 45.0%
ATAGTGCATCTTGTCAGTGC+CGG - chr3_2:86781546-86781565 None:intergenic 45.0%
! GCACTGACAAGATGCACTAT+TGG + chr3_2:86781546-86781565 Msa0434030:CDS 45.0%
TTCTCAGAAGAGAAACTCGC+AGG + chr3_2:86781614-86781633 Msa0434030:CDS 45.0%
CCAGAACATCAAATTCACCC+AGG - chr3_2:86781710-86781729 None:intergenic 45.0%
CCTGGGTGAATTTGATGTTC+TGG + chr3_2:86781707-86781726 Msa0434030:CDS 45.0%
CTGAAGAAACGGATCAATCC+TGG - chr3_2:86781940-86781959 None:intergenic 45.0%
CAGGATTGATCCGTTTCTTC+AGG + chr3_2:86781938-86781957 Msa0434030:CDS 45.0%
CGCTCAAGTTCCTGAAGAAA+CGG - chr3_2:86781951-86781970 None:intergenic 45.0%
AATCCTTTCGGGAAAAAGCC+CGG - chr3_2:86782091-86782110 None:intergenic 45.0%
!! AAGGAGCTGTTTTGGGCAAA+TGG + chr3_2:86782143-86782162 Msa0434030:CDS 45.0%
!! AGGAGCTGTTTTGGGCAAAT+GGG + chr3_2:86782144-86782163 Msa0434030:CDS 45.0%
! TTCTGTGTCGGTCCTGAAAA+GGG - chr3_2:86782228-86782247 None:intergenic 45.0%
! TTTCTGTGTCGGTCCTGAAA+AGG - chr3_2:86782229-86782248 None:intergenic 45.0%
CTCAATGAGGCTTTCTGTGT+CGG - chr3_2:86782240-86782259 None:intergenic 45.0%
GCCTCATTGAGCAGTTTAGA+CGG + chr3_2:86782249-86782268 Msa0434030:CDS 45.0%
TCCGTCTAAACTGCTCAATG+AGG - chr3_2:86782253-86782272 None:intergenic 45.0%
GGCAAGGTCGTACTAAATAC+AGG - chr3_2:86782516-86782535 None:intergenic 45.0%
GATAAATTACCTGCTGGGCA+AGG - chr3_2:86782532-86782551 None:intergenic 45.0%
TCAAGCTTTACTACCGGACA+TGG + chr3_2:86782563-86782582 Msa0434030:three_prime_UTR 45.0%
! TTTCTTTCGAGTCCGAAGTG+AGG + chr3_2:86782639-86782658 Msa0434030:three_prime_UTR 45.0%
TAAGGGACAACACAATCCAG+AGG - chr3_2:86782890-86782909 None:intergenic 45.0%
GCTGCTACCGTAACATCGAT+CGG - chr3_2:86777710-86777729 None:intergenic 50.0%
ATCTTTAGCGACGGTGGTGA+TGG - chr3_2:86777861-86777880 None:intergenic 50.0%
GGCATTATCTTTAGCGACGG+TGG - chr3_2:86777867-86777886 None:intergenic 50.0%
TGGTGGAAAGTTGACCGAGT+GGG - chr3_2:86777920-86777939 None:intergenic 50.0%
TTGGTGGAAAGTTGACCGAG+TGG - chr3_2:86777921-86777940 None:intergenic 50.0%
GTATTCATCGGAGAGGTTGG+TGG - chr3_2:86777937-86777956 None:intergenic 50.0%
! GAGGTATTCATCGGAGAGGT+TGG - chr3_2:86777940-86777959 None:intergenic 50.0%
! AGGTGAGGTATTCATCGGAG+AGG - chr3_2:86777944-86777963 None:intergenic 50.0%
TCTCGTAGGCAGTTAAGGTG+AGG - chr3_2:86777959-86777978 None:intergenic 50.0%
ACCAGAAGAGGTTCGACATG+CGG - chr3_2:86777991-86778010 None:intergenic 50.0%
ACTGAGAGGCTTACCAGAAG+AGG - chr3_2:86778003-86778022 None:intergenic 50.0%
!! AAGAGTCCTGGTTCTGGTTC+TGG + chr3_2:86778179-86778198 Msa0434030:CDS 50.0%
!! TCTGGTTCTGGTTCTGCTTC+CGG + chr3_2:86778191-86778210 Msa0434030:CDS 50.0%
GAAACGACCGTTAACGGTTG+GGG + chr3_2:86778232-86778251 Msa0434030:CDS 50.0%
TAACGGTTGGGGAGCTTATG+AGG + chr3_2:86778243-86778262 Msa0434030:CDS 50.0%
!! GATGAGGGTTTCTGAAGCCA+TGG + chr3_2:86778271-86778290 Msa0434030:CDS 50.0%
GCGTTGCTCAGAATTTCTGC+TGG + chr3_2:86778311-86778330 Msa0434030:CDS 50.0%
GCTCAGAATTTCTGCTGGAC+AGG + chr3_2:86778316-86778335 Msa0434030:CDS 50.0%
ATGGCAGAAGAGGACTCTCA+AGG + chr3_2:86779141-86779160 Msa0434030:CDS 50.0%
GAAGAGGACTCTCAAGGTTC+TGG + chr3_2:86779147-86779166 Msa0434030:CDS 50.0%
TTGGATAGGCCCATCGAAAC+CGG + chr3_2:86779256-86779275 Msa0434030:CDS 50.0%
GATTCATGTCACTGGGCAGA+TGG + chr3_2:86779358-86779377 Msa0434030:CDS 50.0%
! ATTTGTTGCCACTGGCCAGA+TGG + chr3_2:86779561-86779580 Msa0434030:CDS 50.0%
GAGCTTCTGTCTGATGCTGA+TGG + chr3_2:86779589-86779608 Msa0434030:CDS 50.0%
!! GGAGGGCATTGTCTCTTTAG+GGG + chr3_2:86779765-86779784 Msa0434030:CDS 50.0%
! TGTCTCTTTAGGGGTAGCAG+CGG + chr3_2:86779774-86779793 Msa0434030:CDS 50.0%
!! TCTACGTACTGCTTTTGCCC+AGG + chr3_2:86779897-86779916 Msa0434030:CDS 50.0%
TGGAGAAAGCAGACTCAAGC+AGG + chr3_2:86780455-86780474 Msa0434030:CDS 50.0%
AGAAAGCAGACTCAAGCAGG+AGG + chr3_2:86780458-86780477 Msa0434030:CDS 50.0%
GAAAGCAGACTCAAGCAGGA+GGG + chr3_2:86780459-86780478 Msa0434030:CDS 50.0%
TTGCAAGAATGGCAAGGAGG+GGG - chr3_2:86780510-86780529 None:intergenic 50.0%
CCTTTGCAAGAATGGCAAGG+AGG - chr3_2:86780513-86780532 None:intergenic 50.0%
CCTCCTTGCCATTCTTGCAA+AGG + chr3_2:86780510-86780529 Msa0434030:CDS 50.0%
TGCAAAGGATGTAGGCAGCT+TGG + chr3_2:86780525-86780544 Msa0434030:CDS 50.0%
CGTTTCCATAGCATGCATGG+AGG - chr3_2:86780627-86780646 None:intergenic 50.0%
GTTAAGAGCTGCAGACCAGT+TGG + chr3_2:86780702-86780721 Msa0434030:CDS 50.0%
GCACAAGGTCTTTCTCCAAC+TGG - chr3_2:86780720-86780739 None:intergenic 50.0%
CCTCAACAGCTATCTGCACA+AGG - chr3_2:86780735-86780754 None:intergenic 50.0%
CCTTGTGCAGATAGCTGTTG+AGG + chr3_2:86780732-86780751 Msa0434030:CDS 50.0%
!! TCAGTGGACAGTGATGATGG+TGG + chr3_2:86780757-86780776 Msa0434030:CDS 50.0%
!! CTTCGTAAGGAGGCATTTCG+CGG - chr3_2:86780795-86780814 None:intergenic 50.0%
AATGCCTCCTTACGAAGCAG+AGG + chr3_2:86780798-86780817 Msa0434030:CDS 50.0%
ATGCCTCCTTACGAAGCAGA+GGG + chr3_2:86780799-86780818 Msa0434030:CDS 50.0%
ATTGCACCCTCTGCTTCGTA+AGG - chr3_2:86780808-86780827 None:intergenic 50.0%
TGCTTGTGGACTCCAAAGCT+AGG - chr3_2:86781218-86781237 None:intergenic 50.0%
GGAAGCAATGCAGGATGCAT+TGG - chr3_2:86781325-86781344 None:intergenic 50.0%
GCCAAAGCTAAATCTGGCTG+TGG + chr3_2:86781388-86781407 Msa0434030:CDS 50.0%
ATTCCTTCAAGACACGCAGC+TGG - chr3_2:86781822-86781841 None:intergenic 50.0%
AGGAATTCAGCAGCTCTGTG+AGG + chr3_2:86781836-86781855 Msa0434030:CDS 50.0%
GGATCAATCCTGGAAGACGA+GGG - chr3_2:86781930-86781949 None:intergenic 50.0%
ATCCTTTCGGGAAAAAGCCC+GGG - chr3_2:86782090-86782109 None:intergenic 50.0%
!! GGAGCTGTTTTGGGCAAATG+GGG + chr3_2:86782145-86782164 Msa0434030:CDS 50.0%
!! CTGTTTTGGGCAAATGGGGA+CGG + chr3_2:86782149-86782168 Msa0434030:CDS 50.0%
ACAGGTTTGCAACTACCCTG+AGG + chr3_2:86782192-86782211 Msa0434030:CDS 50.0%
AAGGGGAAGGATAGACCTCA+GGG - chr3_2:86782210-86782229 None:intergenic 50.0%
AAAGGGGAAGGATAGACCTC+AGG - chr3_2:86782211-86782230 None:intergenic 50.0%
! GGTCTATCCTTCCCCTTTTC+AGG + chr3_2:86782213-86782232 Msa0434030:CDS 50.0%
! TCTGTGTCGGTCCTGAAAAG+GGG - chr3_2:86782227-86782246 None:intergenic 50.0%
TGTCCGGAAGTTGGAGGTAA+TGG - chr3_2:86782317-86782336 None:intergenic 50.0%
TACACCGAGAACATTGGCCA+AGG + chr3_2:86782597-86782616 Msa0434030:three_prime_UTR 50.0%
ACACCGAGAACATTGGCCAA+GGG + chr3_2:86782598-86782617 Msa0434030:three_prime_UTR 50.0%
AAGCCCTTGGCCAATGTTCT+CGG - chr3_2:86782604-86782623 None:intergenic 50.0%
GAGTGGGGAAGGAAGATCGT+CGG - chr3_2:86777904-86777923 None:intergenic 55.0%
GACGATCTTCCTTCCCCACT+CGG + chr3_2:86777903-86777922 Msa0434030:CDS 55.0%
GAAAGTTGACCGAGTGGGGA+AGG - chr3_2:86777915-86777934 None:intergenic 55.0%
GGTGGAAAGTTGACCGAGTG+GGG - chr3_2:86777919-86777938 None:intergenic 55.0%
GCAGAACCAGAACCAGAACC+AGG - chr3_2:86778188-86778207 None:intergenic 55.0%
!! TCTGGTTCTGCTTCCGGTTC+CGG + chr3_2:86778197-86778216 Msa0434030:CDS 55.0%
CAATTTCCCCTGACCGGAAC+CGG - chr3_2:86778213-86778232 None:intergenic 55.0%
ACGTCTCACACGCGAATCCA+TGG - chr3_2:86778291-86778310 None:intergenic 55.0%
! GAGGACTCTCAAGGTTCTGG+AGG + chr3_2:86779150-86779169 Msa0434030:CDS 55.0%
!! ACTCTCAAGGTTCTGGAGGC+TGG + chr3_2:86779154-86779173 Msa0434030:CDS 55.0%
AATCCAACTCTGCTGCGCAG+CGG + chr3_2:86779209-86779228 Msa0434030:CDS 55.0%
TGGATAGGCCCATCGAAACC+GGG + chr3_2:86779257-86779276 Msa0434030:CDS 55.0%
! TGCCACTGGCCAGATGGATT+TGG + chr3_2:86779567-86779586 Msa0434030:CDS 55.0%
CTCCAAATCCATCTGGCCAG+TGG - chr3_2:86779572-86779591 None:intergenic 55.0%
GCTATTGCACGGATGCACCT+AGG - chr3_2:86780290-86780309 None:intergenic 55.0%
AGATGGCATCCTTTGGCAGC+AGG + chr3_2:86780586-86780605 Msa0434030:CDS 55.0%
ACAGCAAGACCTGCTGCCAA+AGG - chr3_2:86780598-86780617 None:intergenic 55.0%
TTTGGCAGCAGGTCTTGCTG+TGG + chr3_2:86780597-86780616 Msa0434030:CDS 55.0%
GCTACCCTCCATGCATGCTA+TGG + chr3_2:86780619-86780638 Msa0434030:CDS 55.0%
TCGACGCCATGCATCACTTC+AGG - chr3_2:86781346-86781365 None:intergenic 55.0%
!! CTTGTCAGTGCCGGCATTGT+TGG - chr3_2:86781537-86781556 None:intergenic 55.0%
TCTCCAGCTGCGTGTCTTGA+AGG + chr3_2:86781816-86781835 Msa0434030:CDS 55.0%
CGGATCAATCCTGGAAGACG+AGG - chr3_2:86781931-86781950 None:intergenic 55.0%
TTTCGGGAAAAAGCCCGGGA+GGG - chr3_2:86782086-86782105 None:intergenic 55.0%
TGTCGGTCCTGAAAAGGGGA+AGG - chr3_2:86782223-86782242 None:intergenic 55.0%
TACCTCCAACTTCCGGACAG+TGG + chr3_2:86782318-86782337 Msa0434030:CDS 55.0%
ACCTCCAACTTCCGGACAGT+GGG + chr3_2:86782319-86782338 Msa0434030:CDS 55.0%
ATCAGATGGACCCCACTGTC+CGG - chr3_2:86782333-86782352 None:intergenic 55.0%
TTAGTACGACCTTGCCCAGC+AGG + chr3_2:86782520-86782539 Msa0434030:three_prime_UTR 55.0%
GAGAACATTGGCCAAGGGCT+TGG + chr3_2:86782603-86782622 Msa0434030:three_prime_UTR 55.0%
GAAGGAAGATCGTCGGCGGT+AGG - chr3_2:86777897-86777916 None:intergenic 60.0%
TGGGGAAGGAAGATCGTCGG+CGG - chr3_2:86777901-86777920 None:intergenic 60.0%
TGCGGCGACGAAGATCTCGT+AGG - chr3_2:86777973-86777992 None:intergenic 60.0%
GCCGCATGTCGAACCTCTTC+TGG + chr3_2:86777987-86778006 Msa0434030:CDS 60.0%
! CCAAGCGGCGAGTTCTGACT+CGG - chr3_2:86778077-86778096 None:intergenic 60.0%
TTCTGCTTCCGGTTCCGGTC+AGG + chr3_2:86778202-86778221 Msa0434030:CDS 60.0%
TCTGCTTCCGGTTCCGGTCA+GGG + chr3_2:86778203-86778222 Msa0434030:CDS 60.0%
!! GCAAGGAGGGGGAGAGCATT+TGG - chr3_2:86780499-86780518 None:intergenic 60.0%
GCACCCTCTGCTTCGTAAGG+AGG - chr3_2:86780805-86780824 None:intergenic 60.0%
TCGGAGATCCCTCGTCTTCC+AGG + chr3_2:86781919-86781938 Msa0434030:CDS 60.0%
TTCGGGAAAAAGCCCGGGAG+GGG - chr3_2:86782085-86782104 None:intergenic 60.0%
CTTTCGGGAAAAAGCCCGGG+AGG - chr3_2:86782087-86782106 None:intergenic 60.0%
!! CTCCCGGGCTTTTTCCCGAA+AGG + chr3_2:86782085-86782104 Msa0434030:CDS 60.0%
CCTCCAACTTCCGGACAGTG+GGG + chr3_2:86782320-86782339 Msa0434030:CDS 60.0%
!! GCCAAGGGCTTGGTGCTTAC+TGG + chr3_2:86782613-86782632 Msa0434030:three_prime_UTR 60.0%
GCCAGTAAGCACCAAGCCCT+TGG - chr3_2:86782617-86782636 None:intergenic 60.0%
GGAAGATCGTCGGCGGTAGG+CGG - chr3_2:86777894-86777913 None:intergenic 65.0%
CCGAGTCAGAACTCGCCGCT+TGG + chr3_2:86778074-86778093 Msa0434030:CDS 65.0%
CTGCTTCCGGTTCCGGTCAG+GGG + chr3_2:86778204-86778223 Msa0434030:CDS 65.0%
!! GGAGGGGGAGAGCATTTGGC+TGG - chr3_2:86780495-86780514 None:intergenic 65.0%
CCCCACTGTCCGGAAGTTGG+AGG - chr3_2:86782323-86782342 None:intergenic 65.0%
GGACCCCACTGTCCGGAAGT+TGG - chr3_2:86782326-86782345 None:intergenic 65.0%
AGATCGTCGGCGGTAGGCGG+TGG - chr3_2:86777891-86777910 None:intergenic 70.0%
CAGCCGCTGCGCAGCAGAGT+TGG - chr3_2:86779215-86779234 None:intergenic 70.0%
ACTCTGCTGCGCAGCGGCTG+CGG + chr3_2:86779215-86779234 Msa0434030:CDS 70.0%
! TGCTTGCTGGAGGCCCCTCC+CGG + chr3_2:86782069-86782088 Msa0434030:CDS 70.0%
TCGTCGGCGGTAGGCGGTGG+TGG - chr3_2:86777888-86777907 None:intergenic 75.0%
! GCTTGCTGGAGGCCCCTCCC+GGG + chr3_2:86782070-86782089 Msa0434030:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 86777645 86783032 86777645 ID=Msa0434030;Name=Msa0434030
chr3_2 mRNA 86777645 86783032 86777645 ID=Msa0434030-mRNA-1;Parent=Msa0434030;Name=Msa0434030-mRNA-1;_AED=0.02;_eAED=0.02;_QI=150|1|1|1|1|1|5|587|996
chr3_2 exon 86777645 86778337 86777645 ID=Msa0434030-mRNA-1:exon:25144;Parent=Msa0434030-mRNA-1
chr3_2 exon 86779049 86779918 86779049 ID=Msa0434030-mRNA-1:exon:25145;Parent=Msa0434030-mRNA-1
chr3_2 exon 86780451 86780906 86780451 ID=Msa0434030-mRNA-1:exon:25146;Parent=Msa0434030-mRNA-1
chr3_2 exon 86781220 86781409 86781220 ID=Msa0434030-mRNA-1:exon:25147;Parent=Msa0434030-mRNA-1
chr3_2 exon 86781514 86783032 86781514 ID=Msa0434030-mRNA-1:exon:25148;Parent=Msa0434030-mRNA-1
chr3_2 five_prime_UTR 86777645 86777794 86777645 ID=Msa0434030-mRNA-1:five_prime_utr;Parent=Msa0434030-mRNA-1
chr3_2 CDS 86777795 86778337 86777795 ID=Msa0434030-mRNA-1:cds;Parent=Msa0434030-mRNA-1
chr3_2 CDS 86779049 86779918 86779049 ID=Msa0434030-mRNA-1:cds;Parent=Msa0434030-mRNA-1
chr3_2 CDS 86780451 86780906 86780451 ID=Msa0434030-mRNA-1:cds;Parent=Msa0434030-mRNA-1
chr3_2 CDS 86781220 86781409 86781220 ID=Msa0434030-mRNA-1:cds;Parent=Msa0434030-mRNA-1
chr3_2 CDS 86781514 86782445 86781514 ID=Msa0434030-mRNA-1:cds;Parent=Msa0434030-mRNA-1
chr3_2 three_prime_UTR 86782446 86783032 86782446 ID=Msa0434030-mRNA-1:three_prime_utr;Parent=Msa0434030-mRNA-1
Gene Sequence

>Msa0434030

ATGGCTGCTCAACTCTTTAGAGACCTTTCATTAGGCCATTCCAAGAGAAGAGATTCAACAACACCATCACCACCGTCGCTAAAGATAATGCCACCACCGCCTACCGCCGACGATCTTCCTTCCCCACTCGGTCAACTTTCCACCAACCTCTCCGATGAATACCTCACCTTAACTGCCTACGAGATCTTCGTCGCCGCATGTCGAACCTCTTCTGGTAAGCCTCTCAGTTCATCAATTGCTAACTCCTCTTCCAACAACAATAATAGTCATTCTGACTCACCGAGTCAGAACTCGCCGCTTGGTATTCAGAGATCGTTAACTTCTACGGCTGCTAGTAAGGTTAAGAAGGCTTTTGGTTTGAAATCTCCTGGTTCTGGTTCTAAGAAGAGTCCTGGTTCTGGTTCTGGTTCTGCTTCCGGTTCCGGTCAGGGGAAATTGAAACGACCGTTAACGGTTGGGGAGCTTATGAGGAATCAGATGAGGGTTTCTGAAGCCATGGATTCGCGTGTGAGACGTGCGTTGCTCAGAATTTCTGCTGGACAGGTTGGAAGAAGGATTGAGTCTGTGGTGGTTCCACTTGAGCTAATGCAGCAACTCAAGGCTTCGGATTTTACTGATCAACAAGAATACAATGAATGGCAGAAGAGGACTCTCAAGGTTCTGGAGGCTGGTCTAATTTTGCATCCTTACATACCTTTGGATAAATCCAACTCTGCTGCGCAGCGGCTGCGGCAGATTATTCATGCTGCTTTGGATAGGCCCATCGAAACCGGGAAGAATAACGAGTCCATGCAGGTTCTTCGTAGTTCTGTCATGTCTCTTGCAAATAGGTCGTATGATGGATCTCTCACTGATTCATGTCACTGGGCAGATGGGATTCCTCTGAATCTCCGGATTTATGAAATGCTTCTACAATCTTGCTTTGATGTTAATGATGAATCGTCAATTATTGAAGATTTTGATGAGCTAATGGAACAAATCAAGAAGACCTGGGGAATACTTGGATTGAACCAGACGTATCATAATCTCTGTTTTACGTGGGTTTTATTTCATCGATTTGTTGCCACTGGCCAGATGGATTTGGAGCTTCTGTCTGATGCTGATGGCCAGCTAGCTGAAGTTGCAAAAGATGCAAAGACAACCAAAGATTCCGAGTATTCCAAAATTTTGAGTTCTACATTGACTTCGATATTGGGATGGGCAGAGAAAAGGCTTCTTGCATACCATGAAACTTTTGATCGTGGAAACGTTGAAACTATGGAGGGCATTGTCTCTTTAGGGGTAGCAGCGGCTAAGATATTGCTTGAGGATATATCTAATGAATATCGTCGGAGGAGAAGAAATGAAGTCAATGTTGCCCGAGAAAGAATTGAAACGTACATCAGGTCATCTCTACGTACTGCTTTTGCCCAGATAATGGAGAAAGCAGACTCAAGCAGGAGGGCATCAAGAAACCAGCCAAATGCTCTCCCCCTCCTTGCCATTCTTGCAAAGGATGTAGGCAGCTTGGCAGTTAATGAAAAGCTAGTGTTCAGTCCAATACTCAAGAGATGGCATCCTTTGGCAGCAGGTCTTGCTGTGGCTACCCTCCATGCATGCTATGGAAACGAGTTGAAGCAATTCATTTCAGGTATCACAGAATTGACCCCTGATGCTGTTCAAGTGTTAAGAGCTGCAGACCAGTTGGAGAAAGACCTTGTGCAGATAGCTGTTGAGGATTCAGTGGACAGTGATGATGGTGGCAAAGCAATAATCCGCGAAATGCCTCCTTACGAAGCAGAGGGTGCAATTGCAAATCTCGTGAAAATATGGACTAAGACTAGAATAGACAGACTGAAAGACTGGGTTGATAGAAATCTGCAGCAAGAGCTTTGGAGTCCACAAGCAAATCAGGAAGGATACGCTCCATCTTCTGTTGAAGTTCTGCGAATCATAAATGAAACTCTGGATGCATTCTTTCAGCTTCCAATACCAATGCATCCTGCATTGCTTCCTGAAGTGATGCATGGCGTCGATAGATGCCTTCAATATTATGTGGCCAAAGCTAAATCTGGCTGTGGATCTCGAAATACATTTATTCCAACAATGCCGGCACTGACAAGATGCACTATTGGCTCAAAATTTCAAGGGTTTGGGAAGAAAAAAGATAAATCTCCAAATTCTCAGAAGAGAAACTCGCAGGTTGCAACAAATGGGGATAGCTCTTTTGGGATACCACAACTCTGTGTTCGCATAAATACTTTGCAGTGGATCCTGGGTGAATTTGATGTTCTGGAAAAAAGAATAATTACTCTTTTACGGAACTCAGAATCTGCCCGAGAAGAAGATTTTTCAAACGGATTAGCTAGTAAGTTTGAACTATCTCCAGCTGCGTGTCTTGAAGGAATTCAGCAGCTCTGTGAGGCTGCAGCATATAGAATTGTCTTCCATGATCTAAGCCATGTTTTATGGGATAGTTTGTATGTCGGAGATCCCTCGTCTTCCAGGATTGATCCGTTTCTTCAGGAACTTGAGCGAAACTTAATGTTCATTTCCGACAATGTTCATGAAAAAATTCGCACACGCATTATTACAGAAATAATGAGAGCTTCCTTTGATGGATTCTTGTTTGTATTGCTTGCTGGAGGCCCCTCCCGGGCTTTTTCCCGAAAGGATTCACAGATCATAGAGGATGATTTCAAAGTTCTAAAGGAGCTGTTTTGGGCAAATGGGGACGGCTTGCCTTCTGAAATAATAGACAGGTTTGCAACTACCCTGAGGTCTATCCTTCCCCTTTTCAGGACCGACACAGAAAGCCTCATTGAGCAGTTTAGACGGATAACAGTTGAGACATATAAATCTTCTGCCAGGTCTAGAATTCCATTACCTCCAACTTCCGGACAGTGGGGTCCATCTGATCCAAATACATTATTACGTGTTTTATGCTATAGAAATGATGAAGCAGCTTCAAAGTTTCTTAAAAAGACATATGATCTCCCTAAGAAACTTTAA
Protein sequence

>Msa0434030

MAAQLFRDLSLGHSKRRDSTTPSPPSLKIMPPPPTADDLPSPLGQLSTNLSDEYLTLTAYEIFVAACRTSSGKPLSSSIANSSSNNNNSHSDSPSQNSPLGIQRSLTSTAASKVKKAFGLKSPGSGSKKSPGSGSGSASGSGQGKLKRPLTVGELMRNQMRVSEAMDSRVRRALLRISAGQVGRRIESVVVPLELMQQLKASDFTDQQEYNEWQKRTLKVLEAGLILHPYIPLDKSNSAAQRLRQIIHAALDRPIETGKNNESMQVLRSSVMSLANRSYDGSLTDSCHWADGIPLNLRIYEMLLQSCFDVNDESSIIEDFDELMEQIKKTWGILGLNQTYHNLCFTWVLFHRFVATGQMDLELLSDADGQLAEVAKDAKTTKDSEYSKILSSTLTSILGWAEKRLLAYHETFDRGNVETMEGIVSLGVAAAKILLEDISNEYRRRRRNEVNVARERIETYIRSSLRTAFAQIMEKADSSRRASRNQPNALPLLAILAKDVGSLAVNEKLVFSPILKRWHPLAAGLAVATLHACYGNELKQFISGITELTPDAVQVLRAADQLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEAEGAIANLVKIWTKTRIDRLKDWVDRNLQQELWSPQANQEGYAPSSVEVLRIINETLDAFFQLPIPMHPALLPEVMHGVDRCLQYYVAKAKSGCGSRNTFIPTMPALTRCTIGSKFQGFGKKKDKSPNSQKRNSQVATNGDSSFGIPQLCVRINTLQWILGEFDVLEKRIITLLRNSESAREEDFSNGLASKFELSPAACLEGIQQLCEAAAYRIVFHDLSHVLWDSLYVGDPSSSRIDPFLQELERNLMFISDNVHEKIRTRIITEIMRASFDGFLFVLLAGGPSRAFSRKDSQIIEDDFKVLKELFWANGDGLPSEIIDRFATTLRSILPLFRTDTESLIEQFRRITVETYKSSARSRIPLPPTSGQWGPSDPNTLLRVLCYRNDEAASKFLKKTYDLPKKL*